Raspbian Package Auto-Building

kineticstools → 0.6.1+git20200729.e3723e0+dfsg-1 → armhf → 2020-11-28 06:25:49

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (armhf) Sat, 28 Nov 2020 06:02:48 +0000 |
+==============================================================================+

Package: kineticstools
Version: 0.6.1+git20200729.e3723e0+dfsg-1
Source Version: 0.6.1+git20200729.e3723e0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-f085508c-0726-4eab-9491-cc969c8a0396' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 26s (965 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kineticstools.git
Please use:
git clone https://salsa.debian.org/med-team/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (dsc) [2715 B]
Get:2 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (tar) [21.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (diff) [10.4 kB]
Fetched 21.8 MB in 2s (9094 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kineticstools-1apfYK/kineticstools-0.6.1+git20200729.e3723e0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-1apfYK' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ebYSeD/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ebYSeD/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ebYSeD/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2792 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 23 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12784 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-ebYSeD/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Sources [584 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ Packages [654 B]
Fetched 2571 B in 1s (3446 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install kineticstools build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev ca-certificates debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file
  gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl
  libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl
  libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6
  libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-hl-100 libhts3 libicu67
  libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
  libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-stdlib
  libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal
  libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
  libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
  libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support
  node-jquery openssl po-debconf python3 python3-all python3-apipkg
  python3-atomicwrites python3-attr python3-avro python3-biopython
  python3-certifi python3-chardet python3-decorator python3-distutils
  python3-docutils python3-execnet python3-h5py python3-h5py-serial
  python3-idna python3-importlib-metadata python3-iso8601 python3-lib2to3
  python3-minimal python3-more-itertools python3-numpy python3-packaging
  python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
  python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
  python3-pytest-forked python3-pytest-runner python3-pytest-xdist
  python3-reportlab python3-reportlab-accel python3-requests python3-roman
  python3-scipy python3-setuptools python3-six python3-tz python3-uritools
  python3-urllib3 python3-wcwidth python3-zipp python3.8 python3.8-minimal
  python3.9 python3.9-minimal sgml-base xml-core
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc bwa
  clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml
  prank probcons python3-mysqldb python3-matplotlib python3-mmtf
  python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee
  wise w3-dtd-mathml docutils-doc fonts-linuxlibertine | ttf-linux-libertine
  texlive-lang-french texlive-latex-base texlive-latex-recommended execnet-doc
  python-h5py-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg
  python-pbcore-doc python-pil-doc python3-pil-dbg subversion
  python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools
  python-reportlab-doc python3-cryptography python3-openssl python3-socks
  python-requests-doc python-scipy-doc python-setuptools-doc python3.8-venv
  python3.8-doc binfmt-support python3.9-venv python3.9-doc sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common publicsuffix libltdl-dev
  libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils
  python3-pygments python3-olefile python3-renderpm
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev ca-certificates debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file
  gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl
  libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl
  libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6
  libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-hl-100 libhts3 libicu67
  libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
  libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-stdlib
  libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal
  libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
  libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
  libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support
  node-jquery openssl po-debconf python3 python3-all python3-apipkg
  python3-atomicwrites python3-attr python3-avro python3-biopython
  python3-certifi python3-chardet python3-decorator python3-distutils
  python3-docutils python3-execnet python3-h5py python3-h5py-serial
  python3-idna python3-importlib-metadata python3-iso8601 python3-lib2to3
  python3-minimal python3-more-itertools python3-numpy python3-packaging
  python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
  python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
  python3-pytest-forked python3-pytest-runner python3-pytest-xdist
  python3-reportlab python3-reportlab-accel python3-requests python3-roman
  python3-scipy python3-setuptools python3-six python3-tz python3-uritools
  python3-urllib3 python3-wcwidth python3-zipp python3.8 python3.8-minimal
  python3.9 python3.9-minimal sbuild-build-depends-kineticstools-dummy
  sgml-base xml-core
0 upgraded, 133 newly installed, 0 to remove and 23 not upgraded.
Need to get 62.2 MB of archives.
After this operation, 260 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ebYSeD/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.6-1 [37.7 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.6-1 [20.9 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.6-1 [64.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.0-5+rpi1 [788 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.0-5+rpi1 [1628 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-1 [1176 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.16+dfsg-3 [129 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-1 [390 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-1 [3844 B]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 3.3.1-1 [124 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf liblzf1 armhf 3.6-2 [9092 B]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.0-5+rpi1 [1654 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.0-5+rpi1 [455 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.6-1 [1060 B]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-apipkg all 1.5-5 [9432 B]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.4.0-1 [10.2 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-avro all 1.10.0+dfsg-1 [31.4 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b1 [4142 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab-accel armhf 3.5.55-1 [40.2 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 8.0.1-1 [405 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab all 3.5.55-1 [573 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-biopython armhf 1.78+dfsg-3 [1380 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-5 [9064 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-3 [384 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-execnet all 1.7.1-3 [41.0 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-serial armhf 2.10.0-9 [596 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py all 2.10.0-9 [11.4 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-iso8601 all 0.1.12-2 [13.5 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.4-1 [30.4 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.11-1 [107 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.24.0+dfsg-1 [71.7 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.4-2 [34.8 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-pbcommand all 1.1.1+git20200506.d345551-1 [90.6 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-3 [1589 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-pbcore all 1.7.1+git20200430.a127b1e+dfsg-1 [2881 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-5 [22.1 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.9.0-2 [94.1 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.11-1 [268 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-forked all 1.3.0-1 [7432 B]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-runner all 2.11.1-1.2 [8528 B]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-xdist all 1.32.0-2 [42.1 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.5.4-1 [12.0 MB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-uritools all 3.0.0-1 [30.2 kB]
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Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up libicu67:armhf (67.1-4) ...
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-1) ...
No schema files found: doing nothing.
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Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up liblzf1:armhf (3.6-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.19.8.1-10) ...
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Setting up libgfortran5:armhf (10.2.0-16+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up sgml-base (1.30) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up python3.9-minimal (3.9.0-5+rpi1) ...
Setting up openssl (1.1.1h-1) ...
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Setting up libbsd0:armhf (0.10.0-1) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up node-jquery (3.5.1+dfsg+~3.5.4-1) ...
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Setting up libjs-underscore (1.9.1~dfsg-1) ...
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Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
Setting up mime-support (3.66) ...
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Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
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Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
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Setting up xml-core (0.18+nmu1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.4-1) ...
Setting up libpython3.8-stdlib:armhf (3.8.6-1) ...
Setting up python3.8 (3.8.6-1) ...
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Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3 (3.8.6-1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2020.4-2) ...
Setting up python3-atomicwrites (1.4.0-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
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Setting up python3-roman (2.0.0-5) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up python3-iso8601 (0.1.12-2) ...
Setting up python3-wcwidth (0.1.9+dfsg1-2) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-avro (1.10.0+dfsg-1) ...
Setting up python3-reportlab-accel:armhf (3.5.55-1) ...
Setting up python3-idna (2.10-1) ...
Setting up libjs-sphinxdoc (3.3.1-1) ...
Setting up python3-urllib3 (1.25.11-1) ...
Setting up python3-reportlab (3.5.55-1) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-apipkg (1.5-5) ...
Setting up python3.9 (3.9.0-5+rpi1) ...
Setting up python3-uritools (3.0.0-1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-attr (20.3.0-1) ...
Setting up python3-pysam (0.15.4+ds-3) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up python3-py (1.9.0-2) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.8.6-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-packaging (20.4-1) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up python3-requests (2.24.0+dfsg-1) ...
Setting up python3-numpy (1:1.19.4-1+b1) ...
Setting up python3-pytest-runner (2.11.1-1.2) ...
Setting up python3-biopython (1.78+dfsg-3) ...
Setting up python3-execnet (1.7.1-3) ...
Setting up python3-scipy (1.5.4-1) ...
Setting up python3-importlib-metadata (1.6.0-2) ...
Setting up python3-h5py-serial (2.10.0-9) ...
Setting up python3-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) ...
Setting up python3-h5py (2.10.0-9) ...
Setting up python3-pbcommand (1.1.1+git20200506.d345551-1) ...
Setting up python3-pluggy (0.13.0-5) ...
Setting up python3-pytest (4.6.11-1) ...
Setting up python3-pytest-forked (1.3.0-1) ...
Setting up python3-pytest-xdist (1.32.0-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-3) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 docutils-common_0.16+dfsg-3 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libaec0_1.0.4-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-16+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.2+dfsg-4 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhdf5-103-1_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libjs-jquery_3.5.1+dfsg+~3.5.4-1 libjs-sphinxdoc_3.3.1-1 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.9-4 libldap-2.4-2_2.4.56+dfsg-1+rpi1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzf1_3.6-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libpython3-stdlib_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9-minimal_3.9.0-5+rpi1 libpython3.9-stdlib_3.9.0-5+rpi1 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 node-jquery_3.5.1+dfsg+~3.5.4-1 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.6-1 python3-all_3.8.6-1 python3-apipkg_1.5-5 python3-atomicwrites_1.4.0-1 python3-attr_20.3.0-1 python3-avro_1.10.0+dfsg-1 python3-biopython_1.78+dfsg-3 python3-certifi_2020.6.20-1 python3-chardet_3.0.4-7 python3-decorator_4.4.2-2 python3-distutils_3.8.6-1 python3-docutils_0.16+dfsg-3 python3-execnet_1.7.1-3 python3-h5py_2.10.0-9 python3-h5py-serial_2.10.0-9 python3-idna_2.10-1 python3-importlib-metadata_1.6.0-2 python3-iso8601_0.1.12-2 python3-lib2to3_3.8.6-1 python3-minimal_3.8.6-1 python3-more-itertools_4.2.0-3 python3-numpy_1:1.19.4-1+b1 python3-packaging_20.4-1 python3-pbcommand_1.1.1+git20200506.d345551-1 python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1 python3-pil_8.0.1-1 python3-pkg-resources_50.3.0-1 python3-pluggy_0.13.0-5 python3-py_1.9.0-2 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3 python3-pytest_4.6.11-1 python3-pytest-forked_1.3.0-1 python3-pytest-runner_2.11.1-1.2 python3-pytest-xdist_1.32.0-2 python3-reportlab_3.5.55-1 python3-reportlab-accel_3.5.55-1 python3-requests_2.24.0+dfsg-1 python3-roman_2.0.0-5 python3-scipy_1.5.4-1 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3-tz_2020.4-2 python3-uritools_3.0.0-1 python3-urllib3_1.25.11-1 python3-wcwidth_0.1.9+dfsg1-2 python3-zipp_1.0.0-3 python3.8_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5+rpi1 python3.9-minimal_3.9.0-5+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.MVvBqahb/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 25 22:44:52 2020 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc
dpkg-source: info: extracting kineticstools in /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch
dpkg-source: info: applying specify-link-args.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-f085508c-0726-4eab-9491-cc969c8a0396
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20200729.e3723e0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:232: python3.8 setup.py clean 
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config 
running config
I: pybuild base:232: python3.8 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3.9 setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/kineticsTools
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-3.9/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/kineticsTools/tree_predict.o -o /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-arm-linux-gnueabihf.so -lc
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/kineticsTools
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-3.8/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/kineticsTools/tree_predict.o -o /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tree_predict.cpython-38-arm-linux-gnueabihf.so -lc
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg'
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg PATH=$PATH:/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/bin dh_auto_test
I: pybuild base:232: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build; python3.9 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.9.0+, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 -- /usr/bin/python3.9
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg, inifile: pytest.ini
plugins: forked-1.3.0, xdist-1.32.0
gw0 I / gw1 I / gw2 I / gw3 I

[gw0] linux Python 3.9.0 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build

[gw1] linux Python 3.9.0 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build

[gw2] linux Python 3.9.0 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build

[gw3] linux Python 3.9.0 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build

[gw0] Python 3.9.0+ (heads/bullseye-working-dirty:1cdd6cf, Oct 23 2020, 03:35:11)  -- [GCC 10.2.0]

[gw1] Python 3.9.0+ (heads/bullseye-working-dirty:1cdd6cf, Oct 23 2020, 03:35:11)  -- [GCC 10.2.0]

[gw2] Python 3.9.0+ (heads/bullseye-working-dirty:1cdd6cf, Oct 23 2020, 03:35:11)  -- [GCC 10.2.0]

[gw3] Python 3.9.0+ (heads/bullseye-working-dirty:1cdd6cf, Oct 23 2020, 03:35:11)  -- [GCC 10.2.0]
gw0 [11] / gw1 [11] / gw2 [11] / gw3 [11]

scheduling tests via LoadScopeScheduling

test/test_loader.py::test_basic 
test/test_integration.py::TestKineticsTools::test_help 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
test/test_outputs.py::TestOutputs::test_csv_output 
[gw3] [  9%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output 
[gw0] [ 18%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
test/test_outputs.py::TestOutputs::test_bigwig 
[gw0] [ 27%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
[gw2] [ 36%] PASSED test/test_loader.py::test_basic 
[gw3] [ 45%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig 
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
[gw0] [ 54%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
test/test_loader.py::test_path 
[gw2] [ 63%] PASSED test/test_loader.py::test_path 
test/test_loader.py::test_path_with_prefixed_chem 
[gw2] [ 72%] PASSED test/test_loader.py::test_path_with_prefixed_chem 
test/test_loader.py::test_getResourcePathSpec 
[gw2] [ 81%] PASSED test/test_loader.py::test_getResourcePathSpec 
[gw1] [ 90%] PASSED test/test_integration.py::TestKineticsTools::test_help 
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 
[gw1] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 

==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.9_kineticstools/build/test/test_ReferenceUtils.py _
ImportError while importing test module '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/test/test_ReferenceUtils.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/_pytest/python.py:507: in _importtestmodule
    mod = self.fspath.pyimport(ensuresyspath=importmode)
/usr/lib/python3/dist-packages/py/_path/local.py:704: in pyimport
    __import__(modname)
/usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:304: in load_module
    exec(co, mod.__dict__)
test/test_ReferenceUtils.py:6: in <module>
    from pbcore.io import AlignmentSet
/usr/lib/python3/dist-packages/pbcore/io/__init__.py:8: in <module>
    from .align import *
/usr/lib/python3/dist-packages/pbcore/io/align/__init__.py:1: in <module>
    from .BamIO import *
/usr/lib/python3/dist-packages/pbcore/io/align/BamIO.py:9: in <module>
    from pysam.libcalignmentfile import AlignmentFile  # pylint: disable=no-name-in-module, import-error, fixme, line-too-long
/usr/lib/python3/dist-packages/pysam/__init__.py:5: in <module>
    from pysam.libchtslib import *
E   ModuleNotFoundError: No module named 'pysam.libchtslib'
_ ERROR collecting .pybuild/cpython3_3.9_kineticstools/build/test/test_ipdModel.py _
ImportError while importing test module '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/test/test_ipdModel.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/_pytest/python.py:507: in _importtestmodule
    mod = self.fspath.pyimport(ensuresyspath=importmode)
/usr/lib/python3/dist-packages/py/_path/local.py:704: in pyimport
    __import__(modname)
/usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:304: in load_module
    exec(co, mod.__dict__)
test/test_ipdModel.py:5: in <module>
    from pbcore.io import AlignmentSet
/usr/lib/python3/dist-packages/pbcore/io/__init__.py:8: in <module>
    from .align import *
/usr/lib/python3/dist-packages/pbcore/io/align/__init__.py:1: in <module>
    from .BamIO import *
/usr/lib/python3/dist-packages/pbcore/io/align/BamIO.py:9: in <module>
    from pysam.libcalignmentfile import AlignmentFile  # pylint: disable=no-name-in-module, import-error, fixme, line-too-long
/usr/lib/python3/dist-packages/pysam/__init__.py:5: in <module>
    from pysam.libchtslib import *
E   ModuleNotFoundError: No module named 'pysam.libchtslib'
=============================== warnings summary ===============================
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
  /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead.
    warnings.warn("`Parse` is deprecated in avro 1.10. "

-- Docs: https://docs.pytest.org/en/latest/warnings.html
- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml -
========================== slowest 20 test durations ===========================
5.83s call     .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup    .pybuild/cpython3_3.9_kineticstools/build/test/test_loader.py::test_path
0.01s call     .pybuild/cpython3_3.9_kineticstools/build/test/test_loader.py::test_basic
0.01s setup    .pybuild/cpython3_3.9_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
0.01s setup    .pybuild/cpython3_3.9_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
0.01s teardown .pybuild/cpython3_3.9_kineticstools/build/test/test_outputs.py::TestOutputs::test_csv_output
0.01s setup    .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup    .pybuild/cpython3_3.9_kineticstools/build/test/test_outputs.py::TestOutputs::test_csv_output

(0.00 durations hidden.  Use -vv to show these durations.)
========== 5 passed, 6 skipped, 20 warnings, 2 error in 20.64 seconds ==========
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build; python3.9 -m pytest test
I: pybuild base:232: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build; python3.8 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 -- /usr/bin/python3.8
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg, inifile: pytest.ini
plugins: forked-1.3.0, xdist-1.32.0
gw0 I / gw1 I / gw2 I / gw3 I

[gw0] linux Python 3.8.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build

[gw1] linux Python 3.8.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build

[gw2] linux Python 3.8.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build

[gw3] linux Python 3.8.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build

[gw0] Python 3.8.6 (default, Sep 25 2020, 09:36:53)  -- [GCC 10.2.0]

[gw1] Python 3.8.6 (default, Sep 25 2020, 09:36:53)  -- [GCC 10.2.0]

[gw2] Python 3.8.6 (default, Sep 25 2020, 09:36:53)  -- [GCC 10.2.0]

[gw3] Python 3.8.6 (default, Sep 25 2020, 09:36:53)  -- [GCC 10.2.0]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19]

scheduling tests via LoadScopeScheduling

test/test_ReferenceUtils.py::TestReferenceUtils::test_bam 
test/test_integration.py::TestKineticsTools::test_help 
test/test_ipdModel.py::TestIpdModel::test_refLength 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
[gw3] [  5%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength 
[gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam 
test/test_ipdModel.py::TestIpdModel::test_snippetFunc 
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset 
[gw1] [ 15%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
[gw3] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc 
[gw0] [ 26%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset 
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
[gw0] [ 31%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow 
[gw1] [ 36%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows 
test/test_loader.py::test_basic 
[gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows 
[gw1] [ 47%] PASSED test/test_loader.py::test_basic 
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow 
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks 
[gw3] [ 52%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow 
[gw0] [ 57%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks 
test/test_loader.py::test_path 
[gw1] [ 63%] PASSED test/test_loader.py::test_path 
test/test_loader.py::test_path_with_prefixed_chem 
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
[gw3] [ 68%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
[gw1] [ 73%] PASSED test/test_loader.py::test_path_with_prefixed_chem 
test/test_loader.py::test_getResourcePathSpec 
[gw1] [ 78%] PASSED test/test_loader.py::test_getResourcePathSpec 
[gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help 
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 
[gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 
test/test_outputs.py::TestOutputs::test_csv_output 
[gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output 
test/test_outputs.py::TestOutputs::test_bigwig 
[gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig 

=============================== warnings summary ===============================
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
/usr/lib/python3/dist-packages/avro/schema.py:1249
  /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead.
    warnings.warn("`Parse` is deprecated in avro 1.10. "

-- Docs: https://docs.pytest.org/en/latest/warnings.html
- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.8_kineticstools/build/nosetests.xml -
========================== slowest 20 test durations ===========================
5.18s call     .pybuild/cpython3_3.8_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup    .pybuild/cpython3_3.8_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
0.01s setup    .pybuild/cpython3_3.8_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
0.01s setup    .pybuild/cpython3_3.8_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
0.01s call     .pybuild/cpython3_3.8_kineticstools/build/test/test_loader.py::test_basic
0.01s setup    .pybuild/cpython3_3.8_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup    .pybuild/cpython3_3.8_kineticstools/build/test/test_loader.py::test_path

(0.00 durations hidden.  Use -vv to show these durations.)
============== 5 passed, 14 skipped, 20 warnings in 18.04 seconds ==============
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.9 3.8" returned exit code 13
make[1]: *** [debian/rules:49: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200729.e3723e0+dfsg'
make: *** [debian/rules:21: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-11-28T06:25:44Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 86
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1224
Job: kineticstools_0.6.1+git20200729.e3723e0+dfsg-1
Machine Architecture: armhf
Package: kineticstools
Package-Time: 1376
Source-Version: 0.6.1+git20200729.e3723e0+dfsg-1
Space: 0
Status: failed
Version: 0.6.1+git20200729.e3723e0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-11-28T06:25:44Z
Build needed 00:00:00, 0k disc space

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