kineticstools →
0.6.1+git20200325.3558942+dfsg-1 →
armhf → 2020-04-26 23:26:32
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| kineticstools 0.6.1+git20200325.3558942+dfsg-1 (armhf) Sun, 26 Apr 2020 23:05:54 +0000 |
+==============================================================================+
Package: kineticstools
Version: 0.6.1+git20200325.3558942+dfsg-1
Source Version: 0.6.1+git20200325.3558942+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-45bde06b-6e08-49c3-b4d0-fe7d327e418d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 24s (1012 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kineticstools.git
Please use:
git clone https://salsa.debian.org/med-team/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200325.3558942+dfsg-1 (dsc) [2690 B]
Get:2 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200325.3558942+dfsg-1 (tar) [21.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main kineticstools 0.6.1+git20200325.3558942+dfsg-1 (diff) [9904 B]
Fetched 21.8 MB in 2s (12.6 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kineticstools-KyaHsx/kineticstools-0.6.1+git20200325.3558942+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-KyaHsx' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-AXJHXf/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-AXJHXf/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-AXJHXf/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Packages [435 B]
Fetched 2111 B in 1s (2850 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12265 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-AXJHXf/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Sources [583 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ Packages [655 B]
Fetched 2571 B in 1s (2393 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install kineticstools build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
dwz file gcc-10-base gettext gettext-base groff-base intltool-debian libaec0
libarchive-zip-perl libatomic1 libblas3 libbrotli1 libbsd0 libcc1-0
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgcc1 libgfortran5
libglib2.0-0 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libhts3
libicu63 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
libmpdec2 libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib libpython3.8-minimal
libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1 libstdc++6
libsub-override-perl libsz2 libtiff5 libtinfo5 libtool libubsan1
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db
mime-support openssl po-debconf python3 python3-all python3-apipkg
python3-atomicwrites python3-attr python3-avro python3-biopython
python3-certifi python3-chardet python3-decorator python3-distutils
python3-docutils python3-execnet python3-h5py python3-h5py-serial
python3-idna python3-importlib-metadata python3-iso8601 python3-lib2to3
python3-minimal python3-more-itertools python3-numpy python3-packaging
python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
python3-pytest-forked python3-pytest-runner python3-pytest-xdist
python3-reportlab python3-reportlab-accel python3-requests python3-roman
python3-scipy python3-setuptools python3-six python3-tz python3-uritools
python3-urllib3 python3-wcwidth python3-zipp python3.7 python3.7-minimal
python3.8 python3.8-minimal sensible-utils sgml-base xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
krb5-user liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss
fasttree mafft muscle phylip phyml prank probcons python3-mysqldb
python3-matplotlib python3-rdflib python3-renderpm python3-psycopg2 raxml
samtools t-coffee wise w3-dtd-mathml docutils-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended execnet-doc python-h5py-doc gfortran
python-numpy-doc python3-dev python3-numpy-dbg python-pbcore-doc
python-pil-doc python3-pil-dbg subversion python-pyparsing-doc pdf-viewer
python3-egenix-mxtexttools python-reportlab-doc python3-cryptography
python3-openssl python3-socks python-requests-doc python-scipy-doc
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
python3.8-venv python3.8-doc sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common krb5-locales publicsuffix libltdl-dev
libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils
python3-pygments python3-olefile python3-renderpm
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
dwz file gettext gettext-base groff-base intltool-debian libaec0
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libhts3 libicu63
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1 libmpdec2
libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib libpython3.8-minimal
libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libsz2 libtiff5 libtinfo5 libtool libuchardet0 libwebp6
libwebpdemux2 libwebpmux3 libxml2 m4 man-db mime-support openssl po-debconf
python3 python3-all python3-apipkg python3-atomicwrites python3-attr
python3-avro python3-biopython python3-certifi python3-chardet
python3-decorator python3-distutils python3-docutils python3-execnet
python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata
python3-iso8601 python3-lib2to3 python3-minimal python3-more-itertools
python3-numpy python3-packaging python3-pbcommand python3-pbcore python3-pil
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pysam python3-pytest python3-pytest-forked python3-pytest-runner
python3-pytest-xdist python3-reportlab python3-reportlab-accel
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-tz python3-uritools python3-urllib3 python3-wcwidth python3-zipp
python3.7 python3.7-minimal python3.8 python3.8-minimal
sbuild-build-depends-kineticstools-dummy sensible-utils sgml-base xml-core
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libstdc++6
libubsan1
8 upgraded, 136 newly installed, 0 to remove and 10 not upgraded.
Need to get 64.9 MB of archives.
After this operation, 266 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AXJHXf/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10-20200418-1+rpi1 [8188 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10-20200418-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200418-1+rpi1 [197 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10-20200418-1+rpi1 [408 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10-20200418-1+rpi1 [82.9 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10-20200418-1+rpi1 [36.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10-20200418-1+rpi1 [31.7 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200418-1+rpi1 [36.1 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.10 [184 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.16+dfsg-2 [129 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7 [61.4 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7 [112 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7 [320 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7 [135 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-3 [49.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200418-1+rpi1 [231 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-1+rpi1 [1185 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-1+rpi1 [78.1 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 2.4.3-2 [110 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-apipkg all 1.5-4 [9308 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.1.5-4 [7136 B]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-4 [43.3 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-avro all 1.9.1+dfsg-1 [30.9 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab-accel armhf 3.5.34-1 [39.3 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 7.0.0-4 [393 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab all 3.5.34-1 [564 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-biopython armhf 1.76+dfsg-1+b1 [1393 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2019.11.28-2 [149 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-4 [8972 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-2 [383 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-execnet all 1.7.1-2 [40.8 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-3 [16.7 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-serial armhf 2.10.0-7 [737 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py all 2.10.0-7 [11.3 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.8-2 [36.6 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-2 [42.6 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-2 [5984 B]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.5.0-2 [10.1 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-iso8601 all 0.1.12-2 [13.5 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-2 [109 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.3-1.2 [29.9 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.8-2 [104 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.23.0+dfsg-2 [71.4 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-2 [27.3 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-pbcommand all 1.1.1+git20200313.2a40099-1 [90.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-2 [1589 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-pbcore all 1.7.1+git20200313.41ba394+dfsg-1 [2880 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-4 [22.0 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.1-2 [86.8 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.8+dfsg1-5 [17.7 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.9-3 [267 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-forked all 1.1.3-1 [6860 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-runner all 2.11.1-1.2 [8528 B]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-xdist all 1.31.0-1 [40.9 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-uritools all 3.0.0-1 [30.2 kB]
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Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pytest-xdist (1.31.0-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.10) ...
Processing triggers for libc-bin (2.30-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-2) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-10+rpi1 gcc-9_9.3.0-10+rpi1 libc6-dev_2.30-4+rpi1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-10+rpi1 dash_0.5.10.2-7 debconf_1.5.73 debhelper_12.10 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 docutils-common_0.16+dfsg-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-10+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200418-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-5 gcc-8-base_8.4.0-1+rpi1 gcc-9_9.3.0-10+rpi1 gcc-9-base_9.3.0-10+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libaec0_1.0.4-1 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200418-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblas3_3.9.0-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4+rpi1 libc-dev-bin_2.30-4+rpi1 libc6_2.30-4+rpi1 libc6-dev_2.30-4+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10-20200418-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.10 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libfreetype6_2.10.1-2 libgcc-9-dev_9.3.0-10+rpi1 libgcc-s1_10-20200418-1+rpi1 libgcc1_1:10-20200418-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200418-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7 libhdf5-103-1_1.10.6+repack-1+rpi1 libhdf5-hl-100_1.10.6+repack-1+rpi1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_2.4.3-2 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.17-7 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7 libkrb5support0_1.17-7 libksba8_1.3.5-2 liblapack3_3.9.0-2 liblbfgsb0_3.0+dfsg.3-7 liblcms2-2_2.9-4 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-3 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpsl5_0.21.0-1 libpython3-stdlib_3.8.2-3 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtiff5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200418-1+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.8.2-3 python3-all_3.8.2-3 python3-apipkg_1.5-4 python3-atomicwrites_1.1.5-4 python3-attr_19.3.0-4 python3-avro_1.9.1+dfsg-1 python3-biopython_1.76+dfsg-1+b1 python3-certifi_2019.11.28-2 python3-chardet_3.0.4-7 python3-decorator_4.4.2-2 python3-distutils_3.8.2-2 python3-docutils_0.16+dfsg-2 python3-execnet_1.7.1-2 python3-h5py_2.10.0-7 python3-h5py-serial_2.10.0-7 python3-idna_2.8-2 python3-importlib-metadata_1.5.0-2 python3-iso8601_0.1.12-2 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-3 python3-more-itertools_4.2.0-2 python3-numpy_1:1.17.4-5+b1 python3-packaging_20.3-1.2 python3-pbcommand_1.1.1+git20200313.2a40099-1 python3-pbcore_1.7.1+git20200313.41ba394+dfsg-1 python3-pil_7.0.0-4 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-4 python3-py_1.8.1-2 python3-pyparsing_2.4.6-2 python3-pysam_0.15.4+ds-2 python3-pytest_4.6.9-3 python3-pytest-forked_1.1.3-1 python3-pytest-runner_2.11.1-1.2 python3-pytest-xdist_1.31.0-1 python3-reportlab_3.5.34-1 python3-reportlab-accel_3.5.34-1 python3-requests_2.23.0+dfsg-2 python3-roman_2.0.0-4 python3-scipy_1.3.3-3+b1 python3-setuptools_44.0.0-1 python3-six_1.14.0-3 python3-tz_2019.3-2 python3-uritools_3.0.0-1 python3-urllib3_1.25.8-2 python3-wcwidth_0.1.8+dfsg1-5 python3-zipp_1.0.0-2 python3.7_3.7.7-1 python3.7-minimal_3.7.7-1 python3.8_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Apr 22 20:17:32 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kineticstools_0.6.1+git20200325.3558942+dfsg-1.dsc
dpkg-source: info: extracting kineticstools in /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20200325.3558942+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20200325.3558942+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-45bde06b-6e08-49c3-b4d0-fe7d327e418d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20200325.3558942+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/kineticsTools
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-3.8/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/kineticsTools/tree_predict.o -o /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tree_predict.cpython-38-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg PATH=$PATH:/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/bin dh_auto_test
I: pybuild base:217: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build; python3.8 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.8.2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 -- /usr/bin/python3.8
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg, inifile: pytest.ini
plugins: forked-1.1.3, xdist-1.31.0
gw0 I / gw1 I / gw2 I / gw3 I
[gw0] linux Python 3.8.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build
[gw1] linux Python 3.8.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build
[gw2] linux Python 3.8.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build
[gw3] linux Python 3.8.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build
[gw0] Python 3.8.2 (default, Feb 25 2020, 13:04:52) -- [GCC 9.2.1 20200123]
[gw1] Python 3.8.2 (default, Feb 25 2020, 13:04:52) -- [GCC 9.2.1 20200123]
[gw2] Python 3.8.2 (default, Feb 25 2020, 13:04:52) -- [GCC 9.2.1 20200123]
[gw3] Python 3.8.2 (default, Feb 25 2020, 13:04:52) -- [GCC 9.2.1 20200123]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19]
scheduling tests via LoadScopeScheduling
test/test_ipdModel.py::TestIpdModel::test_refLength
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
[gw1] [ 5%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
[gw3] [ 10%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_ipdModel.py::TestIpdModel::test_snippetFunc
test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
[gw1] [ 15%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_integration.py::TestKineticsTools::test_help
[gw0] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
[gw3] [ 26%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
test/test_loader.py::test_basic
[gw1] [ 31%] PASSED test/test_loader.py::test_basic
test/test_loader.py::test_path
[gw1] [ 36%] PASSED test/test_loader.py::test_path
[gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw3] [ 47%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
[gw0] [ 52%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
test/test_loader.py::test_path_with_prefixed_chem
[gw1] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem
[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
test/test_loader.py::test_getResourcePathSpec
[gw1] [ 68%] PASSED test/test_loader.py::test_getResourcePathSpec
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw0] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
[gw3] [ 78%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
[gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
test/test_outputs.py::TestOutputs::test_csv_output
[gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output
test/test_outputs.py::TestOutputs::test_bigwig
[gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig
- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/nosetests.xml -
========================== slowest 20 test durations ===========================
5.56s call .pybuild/cpython3_3.8_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s call .pybuild/cpython3_3.8_kineticstools/build/test/test_loader.py::test_path_with_prefixed_chem
0.01s call .pybuild/cpython3_3.8_kineticstools/build/test/test_loader.py::test_basic
0.01s setup .pybuild/cpython3_3.8_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup .pybuild/cpython3_3.8_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
0.01s setup .pybuild/cpython3_3.8_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
(0.00 durations hidden. Use -vv to show these durations.)
==================== 5 passed, 14 skipped in 16.94 seconds =====================
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
dh_auto_install
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools
running install
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/internal
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks/__pycache__
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/tree_predict.cpython-38-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/kineticsTools/__pycache__/loader.cpython-38.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/.pybuild/cpython3_3.8_kineticstools/build/nosetests.xml -> /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/loader.py to loader.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-38.pyc
running install_egg_info
Copying kineticsTools.egg-info to /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools-0.7.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/python3-kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/* /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
mv debian/python3-kineticstools/usr/lib/python3.*/dist-packages/kineticsTools/resources debian/kineticstools-data/usr/share/kineticstools/
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20200325.3558942+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20200325.3558942+dfsg-1_armhf.deb'.
dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-04-26T23:26:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.changes:
-------------------------------------------------------------
Format: 1.8
Date: Wed, 22 Apr 2020 22:14:02 +0200
Source: kineticstools
Binary: python3-kineticstools python3-kineticstools-dbgsym
Architecture: armhf
Version: 0.6.1+git20200325.3558942+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-kineticstools - detection of DNA modifications (Python 2 library)
Closes: 958471
Changes:
kineticstools (0.6.1+git20200325.3558942+dfsg-1) unstable; urgency=medium
.
[ Etienne Mollier ]
* minor d/rules update to make commands independent of minor python version
.
[ Andreas Tille ]
* Remove non-free documentation from source tarball
Closes: #958471
* Remove outdated README.source
Checksums-Sha1:
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Files:
075f4964d9edca728927ff3f825eaf89 8542 science optional kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.buildinfo
1d4ce3c71e00f39316920cf0f96a1f6c 6784 debug optional python3-kineticstools-dbgsym_0.6.1+git20200325.3558942+dfsg-1_armhf.deb
8dd99fa863cdda445c384b9b08c27a6e 46204 python optional python3-kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-kineticstools-dbgsym_0.6.1+git20200325.3558942+dfsg-1_armhf.deb
-----------------------------------------------------------------------
new Debian package, version 2.0.
size 6784 bytes: control archive=564 bytes.
467 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-kineticstools-dbgsym
Source: kineticstools
Version: 0.6.1+git20200325.3558942+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 19
Depends: python3-kineticstools (= 0.6.1+git20200325.3558942+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for python3-kineticstools
Build-Ids: f9f226be73656e00b02b7d2d22f7375e595b5225
drwxr-xr-x root/root 0 2020-04-22 20:14 ./
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root 8300 2020-04-22 20:14 ./usr/lib/debug/.build-id/f9/f226be73656e00b02b7d2d22f7375e595b5225.debug
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/share/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-04-22 20:14 ./usr/share/doc/python3-kineticstools-dbgsym -> python3-kineticstools
python3-kineticstools_0.6.1+git20200325.3558942+dfsg-1_armhf.deb
----------------------------------------------------------------
new Debian package, version 2.0.
size 46204 bytes: control archive=2120 bytes.
1070 bytes, 20 lines control
3056 bytes, 31 lines md5sums
267 bytes, 12 lines * postinst #!/bin/sh
416 bytes, 12 lines * prerm #!/bin/sh
Package: python3-kineticstools
Source: kineticstools
Version: 0.6.1+git20200325.3558942+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 215
Depends: python3 (<< 3.9), python3 (>= 3.8~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20200325.3558942+dfsg-1)
Section: python
Priority: optional
Homepage: https://github.com/PacificBiosciences/kineticsTools
Description: detection of DNA modifications (Python 2 library)
Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
sequencing data. This tool implements the P_ModificationDetection module in
SMRT® Portal, used by the RS_Modification_Detection and
RS_Modifications_and_Motif_Detection protocol. Researchers interested in
understanding or extending the modification detection algorithms can use these
tools as a starting point.
.
This package is part of the SMRTAnalysis suite and contains the backend
Python 2 library.
drwxr-xr-x root/root 0 2020-04-22 20:14 ./
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/
-rw-r--r-- root/root 276 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 129 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/entry_points.txt
-rw-r--r-- root/root 1 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/not-zip-safe
-rw-r--r-- root/root 39 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/requires.txt
-rw-r--r-- root/root 41 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools-0.7.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools/
-rw-r--r-- root/root 2762 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/BasicLdaEnricher.py
-rw-r--r-- root/root 34458 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/KineticWorker.py
-rw-r--r-- root/root 3700 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/MedakaLdaEnricher.py
-rw-r--r-- root/root 11113 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/MixtureEstimationMethods.py
-rw-r--r-- root/root 14337 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/ModificationDecode.py
-rw-r--r-- root/root 5143 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteCommon.py
-rw-r--r-- root/root 9735 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteDetection.py
-rw-r--r-- root/root 5190 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/PositiveControlEnricher.py
-rw-r--r-- root/root 4365 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/ReferenceUtils.py
-rw-r--r-- root/root 20650 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/ResultWriter.py
-rw-r--r-- root/root 6096 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/WorkerProcess.py
-rw-r--r-- root/root 0 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/__init__.py
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools/internal/
-rw-r--r-- root/root 140 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/internal/__init__.py
-rw-r--r-- root/root 20039 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/ipdModel.py
-rw-r--r-- root/root 23827 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/ipdSummary.py
-rw-r--r-- root/root 2120 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/loader.py
-rw-r--r-- root/root 350 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/pipelineTools.py
lrwxrwxrwx root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools/resources -> ../../../../share/kineticstools/resources
-rw-r--r-- root/root 569 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/sharedArray.py
-rw-r--r-- root/root 5951 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/summarizeModifications.py
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools/tasks/
-rw-r--r-- root/root 0 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/tasks/__init__.py
-rw-r--r-- root/root 3854 2020-03-25 18:00 ./usr/lib/python3/dist-packages/kineticsTools/tasks/gather_bigwig.py
-rw-r--r-- root/root 5272 2020-04-22 20:14 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-38-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/share/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-04-22 20:14 ./usr/share/doc/python3-kineticstools/
-rw-r--r-- root/root 1891 2020-04-22 20:14 ./usr/share/doc/python3-kineticstools/changelog.Debian.gz
-rw-r--r-- root/root 234 2020-03-25 18:00 ./usr/share/doc/python3-kineticstools/changelog.gz
-rw-r--r-- root/root 2068 2020-04-22 20:14 ./usr/share/doc/python3-kineticstools/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 65876
Build-Time: 90
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1082
Job: kineticstools_0.6.1+git20200325.3558942+dfsg-1
Machine Architecture: armhf
Package: kineticstools
Package-Time: 1231
Source-Version: 0.6.1+git20200325.3558942+dfsg-1
Space: 65876
Status: successful
Version: 0.6.1+git20200325.3558942+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-04-26T23:26:25Z
Build needed 00:20:31, 65876k disc space