Raspbian Package Auto-Building

Build log for kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) on armhf

kineticstools → 0.5.1+20150828+git3aa3d96+dfsg-1 → armhf → 2016-02-13 07:50:17 

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-04

+==============================================================================+
| kineticstools 0.5.1+20150828+git3aa3d96+dfsg-1 (armhf)     13 Feb 2016 07:21 |
+==============================================================================+

Package: kineticstools
Version: 0.5.1+20150828+git3aa3d96+dfsg-1
Source Version: 0.5.1+20150828+git3aa3d96+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/kineticstools-JYWiPu/kineticstools-0.5.1+20150828+git3aa3d96+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-JYWiPu' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e3176a43-9e45-48b0-b268-2e26bab5cc66' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8694 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.8 MB]
Fetched 19.5 MB in 21s (913 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/kineticstools.git
Please use:
git clone git://anonscm.debian.org/debian-med/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 108 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main kineticstools 0.5.1+20150828+git3aa3d96+dfsg-1 (dsc) [2442 B]
Get:2 http://172.17.0.1/private stretch-staging/main kineticstools 0.5.1+20150828+git3aa3d96+dfsg-1 (tar) [108 MB]
Get:3 http://172.17.0.1/private stretch-staging/main kineticstools 0.5.1+20150828+git3aa3d96+dfsg-1 (diff) [4572 B]
Fetched 108 MB in 13s (7782 kB/s)
Download complete and in download only mode

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-_TVpqr/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-_TVpqr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [764 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), dh-python, python-all, python-setuptools, python-docutils, python-pbcore (>= 1.2.2), python-pbcommand (>= 0.2.0), python-numpy (>= 1.6.0), python-h5py (>= 1.3.0), python-scipy (>= 0.9.0), python-nose
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all, python-setuptools, python-docutils, python-pbcore (>= 1.2.2), python-pbcommand (>= 0.2.0), python-numpy (>= 1.6.0), python-h5py (>= 1.3.0), python-scipy (>= 0.9.0), python-nose
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-HHbF76/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Sources [286 B]
Get:5 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ Packages [607 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install kineticstools build dependencies (apt-based resolver)                |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autotools-dev bsdmainutils cpp-5 debhelper dh-python dh-strip-nondeterminism
  docutils-common file g++-5 gcc-5 gcc-5-base gettext gettext-base groff-base
  intltool-debian libaec0 libarchive-zip-perl libasan2 libatomic1
  libblas-common libblas3 libcc1-0 libcroco3 libexpat1 libffi6
  libfile-stripnondeterminism-perl libgcc-5-dev libgcc1 libgfortran3
  libglib2.0-0 libgomp1 libhdf5-10 libhts1 libicu55 liblapack3 libmagic1
  libmpdec2 libpipeline1 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
  libpython3.5-stdlib libsqlite3-0 libssl1.0.2 libstdc++-5-dev libstdc++6
  libsz2 libubsan0 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-avro python-decorator python-docutils python-funcsigs
  python-functools32 python-h5py python-jsonschema python-minimal python-mock
  python-nose python-numpy python-pbcommand python-pbcore python-pbr
  python-pkg-resources python-pysam python-roman python-scipy
  python-setuptools python-six python-xmlbuilder python2.7 python2.7-minimal
  python3 python3-minimal python3.5 python3.5-minimal sgml-base xml-core
Suggested packages:
  wamerican | wordlist whois vacation gcc-5-locales dh-make gcc-5-doc
  libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
  libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg
  libmpx0-dbg libquadmath0-dbg gettext-doc autopoint libasprintf-dev
  libgettextpo-dev groff libstdc++-5-doc less www-browser libmail-box-perl
  python-doc python-tk texlive-latex-recommended texlive-latex-base
  texlive-lang-french fonts-linuxlibertine | ttf-linux-libertine
  python-funcsigs-doc python-mock-doc python-coverage python-nose-doc gfortran
  python-dev python-numpy-dbg python-numpy-doc python-pbcore-doc
  python-scipy-doc python-setuptools-doc python-xmlbuilder-doc python2.7-doc
  binfmt-support python3-doc python3-tk python3-venv python3.5-venv
  python3.5-doc sgml-base-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  libmail-sendmail-perl python-pil python-pygments libpaper-utils docutils-doc
  python-dev python-imaging
The following NEW packages will be installed:
  autotools-dev bsdmainutils debhelper dh-python dh-strip-nondeterminism
  docutils-common file gettext gettext-base groff-base intltool-debian libaec0
  libarchive-zip-perl libblas-common libblas3 libcroco3 libexpat1 libffi6
  libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhdf5-10
  libhts1 libicu55 liblapack3 libmagic1 libmpdec2 libpipeline1
  libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
  libpython3.5-minimal libpython3.5-stdlib libsqlite3-0 libssl1.0.2 libsz2
  libunistring0 libxml2 man-db mime-support po-debconf python python-all
  python-avro python-decorator python-docutils python-funcsigs
  python-functools32 python-h5py python-jsonschema python-minimal python-mock
  python-nose python-numpy python-pbcommand python-pbcore python-pbr
  python-pkg-resources python-pysam python-roman python-scipy
  python-setuptools python-six python-xmlbuilder python2.7 python2.7-minimal
  python3 python3-minimal python3.5 python3.5-minimal
  sbuild-build-depends-kineticstools-dummy sgml-base xml-core
The following packages will be upgraded:
  cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
  libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 74 newly installed, 0 to remove and 14 not upgraded.
Need to get 123 MB/123 MB of archives.
After this operation, 180 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-HHbF76/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [844 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-8+rpi1 [47.3 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-8+rpi1 [6554 B]
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Get:7 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-8+rpi1 [84.2 kB]
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Get:11 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-8+rpi1 [22.9 MB]
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Get:16 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
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Get:20 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-3 [1093 kB]
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Get:27 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-3 [1836 kB]
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Get:33 http://172.17.0.1/private stretch-staging/main armhf python-xmlbuilder all 1.0-1 [5884 B]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-5 [553 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-5 [1333 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-1 [35.1 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-5 [2063 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-5 [194 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-1 [18.5 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-1 [21.5 kB]
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Get:43 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
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Get:46 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
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Get:52 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
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Get:56 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
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Get:58 http://172.17.0.1/private stretch-staging/main armhf xml-core all 0.13+nmu2 [24.2 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf docutils-common all 0.12+dfsg-1 [185 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libaec0 armhf 0.3.2-1 [19.4 kB]
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Get:67 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf python-avro all 1.8.0~rc1+dfsg-2 [60.1 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:72 http://172.17.0.1/private stretch-staging/main armhf python-docutils all 0.12+dfsg-1 [361 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 0.4-2 [12.8 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-1 [10.7 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.10.4-2 [1551 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-2 [14.2 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf python-h5py armhf 2.6.0-1 [448 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.8.0-4 [47.1 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf python-mock all 1.3.0-2.1 [58.2 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-4 [49.2 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf python-nose all 1.3.7-1 [132 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf python-pbcommand all 0.2.17-1 [47.4 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf python-pysam armhf 0.8.4+ds-1 [716 kB]
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Get:86 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.17.0-1 [7841 kB]
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update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up dh-python (2.20151103) ...
Setting up python3 (3.5.1-1) ...
Setting up debhelper (9.20160115) ...
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-2 dpkg-dev_1.18.4 g++-5_5.3.1-8+rpi1 gcc-5_5.3.1-8+rpi1 libc6-dev_2.21-7 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.2.1 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-2 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-8+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-python_2.20151103 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-1 docutils-common_0.12+dfsg-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-8+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-8+rpi1 gcc-5-base_5.3.1-8+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.1 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-2 libaec0_0.3.2-1 libapparmor1_2.10-3 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.1 libarchive-zip-perl_1.56-2 libasan1_4.9.3-10 libasan2_5.3.1-8+rpi1 libatomic1_5.3.1-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblas-common_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-8+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.115-1 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgc1c2_1:7.4.2-7.3 libgcc-4.9-dev_4.9.3-10 libgcc-5-dev_5.3.1-8+rpi1 libgcc1_1:5.3.1-8+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran3_5.3.1-8+rpi1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-8+rpi1 libgpg-error0_1.21-1 libhdf5-10_1.8.16+docs-3 libhts1_1.3-1+rpi1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 liblapack3_3.6.0-2 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-3 libpython2.7-stdlib_2.7.11-3 libpython3-stdlib_3.5.1-1 libpython3.5-minimal_3.5.1-5 libpython3.5-stdlib_3.5.1-5 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-3 libsqlite3-0_3.10.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2f-2 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 libsystemd0_228-4+b1 libsz2_0.3.2-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-8+rpi1 libudev1_228-4+b1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-0.1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-5 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-all_2.7.11-1 python-avro_1.8.0~rc1+dfsg-2 python-decorator_4.0.6-1 python-docutils_0.12+dfsg-1 python-funcsigs_0.4-2 python-functools32_3.2.3.2-1 python-h5py_2.6.0-1 python-jsonschema_2.5.1-4 python-minimal_2.7.11-1 python-mock_1.3.0-2.1 python-nose_1.3.7-1 python-numpy_1:1.10.4-2 python-pbcommand_0.2.17-1 python-pbcore_1.2.7+dfsg-1 python-pbr_1.8.0-4 python-pkg-resources_18.8-1 python-pysam_0.8.4+ds-1 python-roman_2.0.0-2 python-scipy_0.17.0-1 python-setuptools_18.8-1 python-six_1.10.0-2 python-xmlbuilder_1.0-1 python2.7_2.7.11-3 python2.7-minimal_2.7.11-3 python3_3.5.1-1 python3-minimal_3.5.1-1 python3.5_3.5.1-5 python3.5-minimal_3.5.1-5 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4 startpar_0.59-3 systemd_228-4+b1 systemd-sysv_228-4+b1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-4+b1 util-linux_2.27.1-3 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Dec 10 08:02:37 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.dsc
dpkg-source: info: extracting kineticstools in kineticstools-0.5.1+20150828+git3aa3d96+dfsg
dpkg-source: info: unpacking kineticstools_0.5.1+20150828+git3aa3d96+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.debian.tar.xz
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying verbose-testing.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e3176a43-9e45-48b0-b268-2e26bab5cc66
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package kineticstools
dpkg-buildpackage: source version 0.5.1+20150828+git3aa3d96+dfsg-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build kineticstools-0.5.1+20150828+git3aa3d96+dfsg
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py clean 
running clean
removing '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin
copying ./bin/__init__.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin
copying ./bin/copyIpdSummaryDataset.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin
copying ./bin/writeSummaryToCmp.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin
copying ./bin/testShared.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
copying ./kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/P6-C4.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/unknown.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/XL-C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/P4-C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/P5-C3.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
copying ./kineticsTools/resources/XL-XL.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/kineticsTools
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c kineticsTools/tree_predict.c -o build/temp.linux-armv7l-2.7/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/kineticsTools/tree_predict.o -o /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/tree_predict.so
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="/usr/bin/make unit-tests" dh_auto_test
I: pybuild base:184: /usr/bin/make unit-tests
make[2]: Entering directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
nosetests -s -v test/*.py
Test modified fraction estimation in detection mode around a known modification in lambda ... ERROR
runTest (detectionMethylFractionTest.TestSetup) ... ok
Test a modification decode around a known modification in lambda ... ERROR
runTest (methyFractionTest.TestSetup) ... ok
runTest (speed.TestSetup) ... ok
testSpeed (speed.TestSpeed) ... ERROR
Check the null model against a few hard-coded contexts ... ERROR
Test a modification decode around a known modification in lambda ... ERROR
runTest (test.TestSetup) ... ok
test_bam (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
test_cmph5 (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
test_createReferenceWindows (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
test_dataset (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
test_enumerateChunks (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
test_parseReferenceWindow (test_ReferenceUtils.ReferenceUtilsTest) ... SKIP: Shared data folder missing
Test for known modifications near the start of H. pylori genome ... SKIP: Missing test data directory
test_private_api (test_inputs.TestBam) ... SKIP: Missing test data directory
Test for known modifications near the start of H. pylori genome ... SKIP: Missing test data directory
test_private_api (test_inputs.TestDataset) ... SKIP: Missing test data directory
Test for known modifications near the start of H. pylori genome ... SKIP: Missing test data directory
test_private_api (test_inputs.TestSplitDataset) ... SKIP: Missing test data directory
test_run_e2e (test_tool_contract.TestIpdSummary) ... SKIP: /mnt/secondary-siv/testdata/kineticsTools or /mnt/secondary-siv/references/Helicobacter_pylori_J99 not available
test_run_e2e (test_tool_contract.TestIpdSummaryChunk) ... SKIP: /mnt/secondary-siv/testdata/kineticsTools or /mnt/secondary-siv/references/Helicobacter_pylori_J99 not available
test_run_e2e (test_tool_contract.TestSummarizeModifications) ... SKIP: /mnt/secondary-siv/testdata/kineticsTools or /mnt/secondary-siv/references/Helicobacter_pylori_J99 not available

======================================================================
ERROR: Test modified fraction estimation in detection mode around a known modification in lambda
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/detectionMethylFractionTest.py", line 40, in testSmallDecode
    kinetics = self.kw._summarizeReferenceRegion(bounds, True, False)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/KineticWorker.py", line 213, in _summarizeReferenceRegion
    predictions = self.manyManyIpdFunc([(x['tpl'], 1 - x['strand']) for x in goodSites])
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 573, in fMany
    return self.gbmModel.getPredictions(contexts)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 272, in getPredictions
    self._initNativeTreePredict()
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 170, in _initNativeTreePredict
    DLL_PATH = _getAbsPath("tree_predict.so")
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 71, in _getAbsPath
    return resource_filename(Requirement.parse('kineticsTools'),'kineticsTools/%s' % fname)
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1170, in resource_filename
    return get_provider(package_or_requirement).get_resource_filename(
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 441, in get_provider
    return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 962, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 849, in resolve
    raise DistributionNotFound(req, requirers)
DistributionNotFound: The 'kineticsTools' distribution was not found and is required by the application
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening AlignmentSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/p4-c2-lambda-mod-decode.cmp.h5',)
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource pbis
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Using reference: /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
root: INFO: Making summary: 14900 to 15100
root: INFO: Retrieved 341 hits
--------------------- >> end captured logging << ---------------------

======================================================================
ERROR: Test a modification decode around a known modification in lambda
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/methyFractionTest.py", line 39, in testSmallDecode
    kinetics = self.kw._summarizeReferenceRegion(bounds, True, True)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/KineticWorker.py", line 213, in _summarizeReferenceRegion
    predictions = self.manyManyIpdFunc([(x['tpl'], 1 - x['strand']) for x in goodSites])
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 573, in fMany
    return self.gbmModel.getPredictions(contexts)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 272, in getPredictions
    self._initNativeTreePredict()
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 170, in _initNativeTreePredict
    DLL_PATH = _getAbsPath("tree_predict.so")
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 71, in _getAbsPath
    return resource_filename(Requirement.parse('kineticsTools'),'kineticsTools/%s' % fname)
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1170, in resource_filename
    return get_provider(package_or_requirement).get_resource_filename(
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 441, in get_provider
    return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 962, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 849, in resolve
    raise DistributionNotFound(req, requirers)
DistributionNotFound: The 'kineticsTools' distribution was not found and is required by the application
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening AlignmentSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/p4-c2-lambda-mod-decode.cmp.h5',)
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource pbis
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Using reference: /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
root: INFO: Making summary: 14900 to 15100
root: INFO: Retrieved 341 hits
--------------------- >> end captured logging << ---------------------

======================================================================
ERROR: testSpeed (speed.TestSpeed)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/speed.py", line 22, in testSpeed
    pFast = self.ipdModel.gbmModel.getPredictions(snips)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 272, in getPredictions
    self._initNativeTreePredict()
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 170, in _initNativeTreePredict
    DLL_PATH = _getAbsPath("tree_predict.so")
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 71, in _getAbsPath
    return resource_filename(Requirement.parse('kineticsTools'),'kineticsTools/%s' % fname)
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1170, in resource_filename
    return get_provider(package_or_requirement).get_resource_filename(
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 441, in get_provider
    return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 962, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 849, in resolve
    raise DistributionNotFound(req, requirers)
DistributionNotFound: The 'kineticsTools' distribution was not found and is required by the application
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening AlignmentSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/p4-c2-lambda-mod-decode.cmp.h5',)
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource pbis
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Using reference: /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
--------------------- >> end captured logging << ---------------------

======================================================================
ERROR: Check the null model against a few hard-coded contexts
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/test.py", line 112, in testCompareNullToGbm
    print "Lut prediction: %f" % ipdFunc(pos, tplStrand)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 554, in f
    return self.gbmModel.getPredictions([context])[0]
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 272, in getPredictions
    self._initNativeTreePredict()
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 170, in _initNativeTreePredict
    DLL_PATH = _getAbsPath("tree_predict.so")
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 71, in _getAbsPath
    return resource_filename(Requirement.parse('kineticsTools'),'kineticsTools/%s' % fname)
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1170, in resource_filename
    return get_provider(package_or_requirement).get_resource_filename(
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 441, in get_provider
    return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 962, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 849, in resolve
    raise DistributionNotFound(req, requirers)
DistributionNotFound: The 'kineticsTools' distribution was not found and is required by the application
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening AlignmentSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/p4-c2-lambda-mod-decode.cmp.h5',)
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource pbis
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Using reference: /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
--------------------- >> end captured logging << ---------------------

======================================================================
ERROR: Test a modification decode around a known modification in lambda
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/test.py", line 162, in testSmallDecode
    kinetics = self.kw._summarizeReferenceRegion(bounds, False, True)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/KineticWorker.py", line 213, in _summarizeReferenceRegion
    predictions = self.manyManyIpdFunc([(x['tpl'], 1 - x['strand']) for x in goodSites])
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 573, in fMany
    return self.gbmModel.getPredictions(contexts)
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 272, in getPredictions
    self._initNativeTreePredict()
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 170, in _initNativeTreePredict
    DLL_PATH = _getAbsPath("tree_predict.so")
  File "/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/kineticsTools/ipdModel.py", line 71, in _getAbsPath
    return resource_filename(Requirement.parse('kineticsTools'),'kineticsTools/%s' % fname)
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1170, in resource_filename
    return get_provider(package_or_requirement).get_resource_filename(
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 441, in get_provider
    return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 962, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 849, in resolve
    raise DistributionNotFound(req, requirers)
DistributionNotFound: The 'kineticsTools' distribution was not found and is required by the application
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening AlignmentSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/p4-c2-lambda-mod-decode.cmp.h5',)
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource pbis
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Using reference: /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReferenceSet with ('/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/test/data/lambda/sequence/lambda.fasta',)
pbcore.io.dataset.DataSetIO: DEBUG: Opening ContigSet
pbcore.io.dataset.DataSetIO: DEBUG: Containers specified
pbcore.io.dataset.DataSetIO: DEBUG: Done populating
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Closing old readers...
pbcore.io.dataset.DataSetIO: DEBUG: Opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
root: INFO: Making summary: 14900 to 15100
root: INFO: Retrieved 341 hits
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 24 tests in 495.338s

FAILED (SKIP=15, errors=5)
Pos: 3, TplStrand: 0
Got ctx: NGGGCGGCGACCTCG
Makefile:35: recipe for target 'unit-tests' failed
make[2]: *** [unit-tests] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
E: pybuild pybuild:274: test: plugin custom failed with: exit code=2: /usr/bin/make unit-tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 --dir . returned exit code 13
debian/rules:18: recipe for target 'override_dh_auto_test' failed
make[1]: [override_dh_auto_test] Error 25 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
 fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
dh_auto_install
I: pybuild base:184: /usr/bin/python setup.py install --root /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools 
running install
running build
running build_py
running build_ext
running install_lib
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin/__init__.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin/copyIpdSummaryDataset.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin/writeSummaryToCmp.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/bin/testShared.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/P6-C4.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/unknown.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/XL-C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/P4-C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/C2.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/P5-C3.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/resources/XL-XL.h5 -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/.pybuild/pythonX.Y_2.7/build/kineticsTools/tree_predict.so -> /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin/__init__.py to __init__.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin/copyIpdSummaryDataset.py to copyIpdSummaryDataset.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin/writeSummaryToCmp.py to writeSummaryToCmp.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/bin/testShared.py to testShared.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/sharedArray.py to sharedArray.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/__init__.py to __init__.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/ipdModel.py to ipdModel.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.pyc
running install_egg_info
running egg_info
creating kineticsTools.egg-info
writing requirements to kineticsTools.egg-info/requires.txt
writing kineticsTools.egg-info/PKG-INFO
writing top-level names to kineticsTools.egg-info/top_level.txt
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
Copying kineticsTools.egg-info to /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/bin
Installing summarizeModifications script to /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/python-kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/kineticstools/usr/bin
mv debian/python-kineticstools/usr/bin/* /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:46: (WARNING/2) "math" role not supported
doc/manual.rst:48: (WARNING/2) "math" role not supported
doc/manual.rst:48: (WARNING/2) "math" role not supported
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.5.1+20150828+git3aa3d96+dfsg'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming tree_predict.so to tree_predict.arm-linux-gnueabihf.so
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-kineticstools/usr/lib/python2.7/dist-packages/kineticsTools/tree_predict.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-kineticstools: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-kineticstools: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-kineticstools: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-kineticstools: unused substitution variable ${python:Versions}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-kineticstools-dbgsym' in '../python-kineticstools-dbgsym_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb'.
dpkg-deb: building package 'python-kineticstools' in '../python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.changes
dpkg-genchanges: warning: package python-kineticstools-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build kineticstools-0.5.1+20150828+git3aa3d96+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160213-0746

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.changes:
-------------------------------------------------------------

Format: 1.8
Date: Wed, 09 Dec 2015 22:36:33 -0800
Source: kineticstools
Binary: kineticstools python-kineticstools
Architecture: armhf
Version: 0.5.1+20150828+git3aa3d96+dfsg-1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 kineticstools - detection of DNA modifications
 python-kineticstools - detection of DNA modifications (Python 2 library)
Closes: 797676
Changes:
 kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #797676)
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 2f5def17cf108d055339a0be39ff7b582b975141 101776026 python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb
Checksums-Sha256:
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 632af3766c0fde039f53bea47fb1256cdc42c2252447d3d8bfc3eeb72298530e 101776026 python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb
Files:
 886118f4579c93b4a33c8adb3ab41c20 5676 debug extra python-kineticstools-dbgsym_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb
 6f3ff90906990c24c31d6ddc9a1d98ed 101776026 python optional python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb

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python-kineticstools-dbgsym_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb
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 new debian package, version 2.0.
 size 5676 bytes: control archive=532 bytes.
     523 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-kineticstools-dbgsym
 Source: kineticstools
 Version: 0.5.1+20150828+git3aa3d96+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 18
 Depends: python-kineticstools (= 0.5.1+20150828+git3aa3d96+dfsg-1)
 Section: debug
 Priority: extra
 Homepage: https://github.com/PacificBiosciences/kineticsTools
 Description: Debug symbols for python-kineticstools
 Auto-Built-Package: debug-symbols
 Build-Ids: 12bcce32d946926b18ce9a110cf94fa7c8f9f790

drwxr-xr-x root/root         0 2016-02-13 07:42 ./
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/lib/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root      7644 2016-02-13 07:42 ./usr/lib/debug/.build-id/12/bcce32d946926b18ce9a110cf94fa7c8f9f790.debug
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/share/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-02-13 07:42 ./usr/share/doc/python-kineticstools-dbgsym -> python-kineticstools


python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_armhf.deb
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 new debian package, version 2.0.
 size 101776026 bytes: control archive=2229 bytes.
    1033 bytes,    20 lines      control              
    3750 bytes,    38 lines      md5sums              
     168 bytes,     9 lines   *  postinst             #!/bin/sh
     275 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-kineticstools
 Source: kineticstools
 Version: 0.5.1+20150828+git3aa3d96+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 104369
 Depends: libc6 (>= 2.4), python (<< 2.8), python (>= 2.7~), python-h5py, python-numpy, python-pbcommand, python-pbcore, python-scipy, python:any (>= 2.7.5-5~)
 Section: python
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/kineticsTools
 Description: detection of DNA modifications (Python 2 library)
  Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
  sequencing data. This tool implements the P_ModificationDetection module in
  SMRT® Portal, used by the RS_Modification_Detection and
  RS_Modifications_and_Motif_Detection protocol. Researchers interested in
  understanding or extending the modification detection algorithms can use these
  tools as a starting point.
  .
  This package is part of the SMRTAnalysis suite and contains the backend
  Python 2 library.

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-rw-r--r-- root/root      4648 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/bin/copyIpdSummaryDataset.py
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-rw-r--r-- root/root      2638 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/BasicLdaEnricher.py
-rw-r--r-- root/root     35840 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/KineticWorker.py
-rw-r--r-- root/root      3628 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/MedakaLdaEnricher.py
-rw-r--r-- root/root     12627 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/MixtureEstimationMethods.py
-rw-r--r-- root/root     15729 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/ModificationDecode.py
-rw-r--r-- root/root      6939 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteCommon.py
-rw-r--r-- root/root     11759 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteDetection.py
-rw-r--r-- root/root      4918 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/PositiveControlEnricher.py
-rw-r--r-- root/root      6268 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/ReferenceUtils.py
-rw-r--r-- root/root     34768 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/ResultWriter.py
-rw-r--r-- root/root      9249 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/WorkerProcess.py
-rw-r--r-- root/root      1829 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/__init__.py
-rw-r--r-- root/root     23110 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/ipdModel.py
-rw-r--r-- root/root     31045 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/ipdSummary.py
-rw-r--r-- root/root      2182 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/pipelineTools.py
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-rw-r--r-- root/root   9644191 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/resources/P6-C4.h5
-rw-r--r-- root/root  14426526 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/resources/XL-C2.h5
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-rw-r--r-- root/root  12164810 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/resources/unknown.h5
-rw-r--r-- root/root      2399 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/sharedArray.py
-rw-r--r-- root/root      7908 2015-08-29 00:19 ./usr/lib/python2.7/dist-packages/kineticsTools/summarizeModifications.py
-rw-r--r-- root/root      5464 2016-02-13 07:42 ./usr/lib/python2.7/dist-packages/kineticsTools/tree_predict.arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2016-02-13 07:41 ./usr/share/
drwxr-xr-x root/root         0 2016-02-13 07:41 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-02-13 07:42 ./usr/share/doc/python-kineticstools/
-rw-r--r-- root/root       176 2015-12-10 07:57 ./usr/share/doc/python-kineticstools/changelog.Debian.gz
-rw-r--r-- root/root       234 2015-08-29 00:19 ./usr/share/doc/python-kineticstools/changelog.gz
-rw-r--r-- root/root      2071 2015-12-10 07:57 ./usr/share/doc/python-kineticstools/copyright


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 336448
Build-Time: 820
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 596
Job: kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1
Machine Architecture: armhf
Package: kineticstools
Package-Time: 1496
Source-Version: 0.5.1+20150828+git3aa3d96+dfsg-1
Space: 336448
Status: successful
Version: 0.5.1+20150828+git3aa3d96+dfsg-1
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Finished at 20160213-0746
Build needed 00:24:56, 336448k disc space