jellyfish →
2.3.1-2+b10 →
armhf → 2024-01-24 23:57:34
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| jellyfish 2.3.1-2+b10 (armhf) Wed, 24 Jan 2024 23:39:34 +0000 |
+==============================================================================+
Package: jellyfish
Version: 2.3.1-2+b10
Source Version: 2.3.1-2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-7c62ecad-5385-475e-947c-70b3979464df' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 10s (2973 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 699 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (dsc) [3282 B]
Get:2 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (tar) [682 kB]
Get:3 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (diff) [13.9 kB]
Fetched 699 kB in 0s (6957 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish-pw9pwG/jellyfish-2.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-pw9pwG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6lYbEN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6lYbEN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6lYbEN/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 60 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (82.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-sequence-python3, perl, chrpath, libhts-dev, dos2unix, samtools
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-sequence-python3, perl, chrpath, libhts-dev, dos2unix, samtools
dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<<BUILDDIR>>/resolver-6lYbEN/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Sources [595 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ Packages [674 B]
Fetched 2602 B in 0s (14.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install jellyfish build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
bsdutils ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libblkid1 libbrotli1 libbsd0
libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev
libdeflate0 libedit2 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu72
libjs-jquery libjs-sphinxdoc libjs-underscore liblzma-dev liblzma5
libmagic-mgc libmagic1 libmount1 libncurses6 libncursesw6 libnghttp2-14
libpipeline1 libpkgconf3 libproc2-0 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib librtmp1 libruby libruby3.1
libsmartcols1 libssh2-1 libsub-override-perl libtinfo6 libtool libuchardet0
libuuid1 libxml2 libyaml-0-2 m4 man-db media-types mount ncurses-base
ncurses-bin openssl pkg-config pkgconf pkgconf-bin po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.11
python3.11-dev python3.11-minimal rake ruby ruby-net-telnet ruby-rubygems
ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools
swig swig4.0 time util-linux util-linux-extra xz-utils yaggo zlib1g
zlib1g-dev
Suggested packages:
gnu-standards autoconf-doc dh-make flit python3-build python3-installer
python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff
libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev liblzma-doc cryptsetup-bin libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
python3.11-venv python3.11-doc binfmt-support ri ruby-dev bundler cwltool
swig-doc swig-examples swig4.0-examples swig4.0-doc dosfstools kbd
util-linux-locales
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libgpm2
publicsuffix libltdl-dev uuid-runtime libmail-sendmail-perl psmisc zip
fonts-lato
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libhts-dev
libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore
liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1
libpkgconf3 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib librtmp1 libruby libruby3.1 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db
media-types openssl pkg-config pkgconf pkgconf-bin po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.11
python3.11-dev python3.11-minimal rake ruby ruby-net-telnet ruby-rubygems
ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools
sbuild-build-depends-jellyfish-dummy swig swig4.0 time yaggo zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 liblzma5 libmount1 libncursesw6 libsmartcols1 libtinfo6
libuuid1 mount ncurses-base ncurses-bin util-linux util-linux-extra xz-utils
zlib1g
15 upgraded, 103 newly installed, 0 to remove and 45 not upgraded.
Need to get 51.5 MB of archives.
After this operation, 182 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6lYbEN/apt_archive ./ sbuild-build-depends-jellyfish-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-6 [87.1 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20240113-1 [423 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-6 [102 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.3-6 [135 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-6 [1113 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20240113-1 [268 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-6 [134 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf autoconf-archive all 20220903-3 [775 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.7-2 [801 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.7-2 [1677 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.3 [227 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20240113-1 [326 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20240113-1 [107 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-6 [28.3 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.7-2 [1694 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.7-2 [590 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:23 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-6 [145 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-6 [168 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-2 [54.9 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-2 [848 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf bc armhf 1.07.1-3 [101 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf time armhf 1.9-0.2 [47.2 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.3 [499 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.105 [10.7 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.10 [82.9 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.10 [882 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231223 [108 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf dos2unix armhf 7.5.1-1 [506 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libcurl4-gnutls-dev armhf 8.5.0-2+rpi1 [456 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libdeflate-dev armhf 1.18-1 [45.8 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libedit2 armhf 3.1-20230828-1 [76.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.6.0-1 [60.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.18+ds-1 [380 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libhts-dev armhf 1.18+ds-1 [1539 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-3 [149 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
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Get:96 http://172.17.4.1/private trixie-staging/main armhf rubygems-integration all 1.18 [6704 B]
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Get:108 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:112 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.7-2 [508 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:115 http://172.17.4.1/private trixie-staging/main armhf samtools armhf 1.19-1 [593 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf swig4.0 armhf 4.1.0-0.3 [1220 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf swig all 4.1.0-0.3 [321 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf yaggo all 1.5.11-1 [21.3 kB]
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Unpacking ruby-net-telnet (0.2.0-1) ...
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Unpacking ruby-webrick (1.8.1-1) ...
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Unpacking ruby-xmlrpc (0.3.2-2) ...
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Unpacking ruby-sdbm:armhf (1.0.0-5+rpi1) ...
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Unpacking libruby:armhf (1:3.1) ...
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Unpacking pkgconf-bin (1.8.1-1) ...
Selecting previously unselected package pkgconf:armhf.
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Unpacking pkgconf:armhf (1.8.1-1) ...
Selecting previously unselected package pkg-config:armhf.
Preparing to unpack .../84-pkg-config_1.8.1-1_armhf.deb ...
Unpacking pkg-config:armhf (1.8.1-1) ...
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Unpacking python3-all (3.11.4-5) ...
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Unpacking python3.11-dev (3.11.7-2) ...
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Unpacking python3-dev (3.11.4-5) ...
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Unpacking python3-all-dev (3.11.4-5) ...
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Unpacking samtools (1.19-1) ...
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Unpacking swig (4.1.0-0.3) ...
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Unpacking sbuild-build-depends-jellyfish-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.6.0-1) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up time (1.9-0.2) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:armhf (0.2.5-1) ...
Setting up libpython3.11-stdlib:armhf (3.11.7-2) ...
Setting up libdebhelper-perl (13.11.10) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up bc (1.07.1-3) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up autoconf-archive (20220903-3) ...
Setting up file (1:5.45-2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20240113-1) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up xz-utils (5.4.5-0.3) ...
Setting up libproc2-0:armhf (2:4.0.4-2) ...
Setting up autopoint (0.21-14) ...
Setting up d-shlibs (0.105) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up autoconf (2.71-3) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up liblzma-dev:armhf (5.4.5-0.3) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up mount (2.39.3-6) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up procps (2:4.0.4-2) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libssh2-1:armhf (1.11.0-4) ...
Setting up dos2unix (7.5.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up swig4.0 (4.1.0-0.3) ...
Setting up openssl (3.1.4-2) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libdeflate-dev:armhf (1.18-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up chrpath (0.16-2) ...
Setting up util-linux-extra (2.39.3-6) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.7-2) ...
Setting up gettext (0.21-14) ...
Setting up swig (4.1.0-0.3) ...
Setting up libpython3.11:armhf (3.11.7-2) ...
Setting up libtool (2.4.7-7) ...
Setting up libedit2:armhf (3.1-20230828-1) ...
Setting up libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Setting up python3 (3.11.4-5) ...
Setting up libcurl4-gnutls-dev:armhf (8.5.0-2+rpi1) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libpython3.11-dev:armhf (3.11.7-2) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up libjs-sphinxdoc (7.2.6-3) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up libhts3:armhf (1.18+ds-1) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up python3.11-dev (3.11.7-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhts-dev:armhf (1.18+ds-1) ...
Setting up python3-all (3.11.4-5) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up samtools (1.19-1) ...
Setting up libpython3-all-dev:armhf (3.11.4-5) ...
Setting up python3-dev (3.11.4-5) ...
Setting up dh-python (6.20231223) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up debhelper (13.11.10) ...
Setting up rake (13.0.6-3) ...
Setting up libruby:armhf (1:3.1) ...
Setting up ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Setting up libruby3.1:armhf (3.1.2-8) ...
Setting up ruby3.1 (3.1.2-8) ...
Setting up ruby (1:3.1) ...
Setting up yaggo (1.5.11-1) ...
Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ...
Setting up ruby-rubygems (3.4.20-1) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 chrpath_0.16-2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-7+rpi1 d-shlibs_0.105 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.10 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dos2unix_7.5.1-1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.5.0-2+rpi1 libcurl4-gnutls-dev_8.5.0-2+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.10 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdpkg-perl_1.22.1+rpi1 libedit2_3.1-20230828-1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20240113-1 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libproc2-0_2:4.0.4-2 libpsl5_0.21.2-1+b1 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.7-2 libpython3.11-dev_3.11.7-2 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby_1:3.1 libruby3.1_3.1.2-8 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-7+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libyaml-0-2_0.2.5-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.3-6 nano_7.2-1 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.4-2 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.11_3.11.7-2 python3.11-dev_3.11.7-2 python3.11-minimal_3.11.7-2 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 ruby_1:3.1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.4.20-1 ruby-sdbm_1.0.0-5+rpi1 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-8 rubygems-integration_1.18 samtools_1.19-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 swig_4.1.0-0.3 swig4.0_4.1.0-0.3 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 time_1.9-0.2 tzdata_2023c-11 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 yaggo_1.5.11-1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Mon Jan 1 11:45:50 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./jellyfish_2.3.1-2.dsc: no acceptable signature found
dpkg-source: info: extracting jellyfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish_2.3.1.orig.tar.gz
dpkg-source: info: unpacking jellyfish_2.3.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying manpage_whatis_entry.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying test_needs_bash
dpkg-source: info: applying python3
dpkg-source: info: applying fix-32-bit.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.3.1-2+b10
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-7c62ecad-5385-475e-947c-70b3979464df
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package jellyfish
dpkg-buildpackage: info: source version 2.3.1-2+b10
dpkg-buildpackage: info: source distribution trixie-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules execute_after_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -d debian/tmp_save_tests ] ; then \
mv debian/tmp_save_tests/* tests ; \
rmdir debian/tmp_save_tests ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch
debian/rules override_dh_update_autotools_config
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# use python configuration from autoconf-archive
mv m4/m4-ax_python_devel.m4 /tmp
dh_update_autotools_config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking 32-bit host C ABI... yes
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib
checking for htslib... yes
checking for samtools... /usr/bin/samtools
checking for unix2dos... /usr/bin/unix2dos
checking for md5sum... md5sum
checking for yaggo... /usr/bin/yaggo
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for __int128... no
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for sys/syscall.h... yes
checking for sys/prctl.h... yes
checking for siginfo_t.si_int... yes
checking for swig... /usr/bin/swig
checking SWIG version... 4.1.0
checking for SWIG library... /usr/share/swig4.0
checking for python... /usr/bin/python3
checking for a version of Python >= '2.1.0'... yes
checking for the sysconfig Python package... yes
checking for Python include path... -I/usr/include/python3.11
checking for Python library path... -L/usr/lib/arm-linux-gnueabihf -lpython3.11
checking for Python site-packages path... /usr/lib/python3.11/site-packages
checking for Python platform specific site-packages path... /usr/lib/python3.11/site-packages
checking python extra libraries... -ldl -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
checking for perl... /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl extension include path... /usr/lib/arm-linux-gnueabihf/perl/5.36/CORE
checking for Perl extension target directory... /usr/lib/perl/5.36.0
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for posix_memalign... yes
checking for aligned_alloc... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_configure --sourcedirectory=swig/perl5
cd swig/perl5 && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread"
-I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -lpthread
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
Warning (mostly harmless): No library found for -ljellyfish-2.0
Generating a Unix-style Makefile
Writing Makefile for jellyfish
Writing MYMETA.yml and MYMETA.json
dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: python3.11 setup.py config
mv /tmp/m4-ax_python_devel.m4 m4
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo
/usr/bin/swig -c++ -python -I./../include -o swig/python/swig_wrap.cpp swig/jellyfish.i
/usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/count_main.o sub_commands/count_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/info_main.o sub_commands/info_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/dump_main.o sub_commands/dump_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/histo_main.o sub_commands/histo_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/stats_main.o sub_commands/stats_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/merge_main.o sub_commands/merge_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/bc_main.o sub_commands/bc_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/query_main.o sub_commands/query_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/cite_main.o sub_commands/cite_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/mem_main.o sub_commands/mem_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/merge_files.o jellyfish/merge_files.cc
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc -fPIC -DPIC -o lib/.libs/rectangular_binary_matrix.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc -o lib/rectangular_binary_matrix.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/mer_dna.lo lib/mer_dna.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc -fPIC -DPIC -o lib/.libs/mer_dna.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc -o lib/mer_dna.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/storage.lo lib/storage.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc -fPIC -DPIC -o lib/.libs/storage.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc -o lib/storage.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/allocators_mmap.lo lib/allocators_mmap.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc -fPIC -DPIC -o lib/.libs/allocators_mmap.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc -o lib/allocators_mmap.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/misc.lo lib/misc.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc -fPIC -DPIC -o lib/.libs/misc.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc -o lib/misc.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/int128.lo lib/int128.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc -fPIC -DPIC -o lib/.libs/int128.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc -o lib/int128.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/thread_exec.lo lib/thread_exec.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc -fPIC -DPIC -o lib/.libs/thread_exec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc -o lib/thread_exec.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/jsoncpp.lo lib/jsoncpp.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp -fPIC -DPIC -o lib/.libs/jsoncpp.o
In file included from /usr/include/c++/13/map:62,
from ./include/jellyfish/json.h:331,
from lib/jsoncpp.cpp:76:
/usr/include/c++/13/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<const Json::Value::CZString, Json::Value>&}; _Key = Json::Value::CZString; _Val = std::pair<const Json::Value::CZString, Json::Value>; _KeyOfValue = std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]':
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function 'std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]',
inlined from 'Json::Value& Json::Value::operator[](ArrayIndex)' at lib/jsoncpp.cpp:2622:28:
/usr/include/c++/13/bits/stl_map.h:927:45: note: parameter passing for argument of type 'std::map<Json::Value::CZString, Json::Value>::const_iterator' {aka 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator'} changed in GCC 7.1
927 | return _M_t._M_emplace_hint_unique(__position,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
928 | std::forward<_Pair>(__x));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]',
inlined from 'Json::Value& Json::Value::resolveReference(const char*, bool)' at lib/jsoncpp.cpp:2687:28:
/usr/include/c++/13/bits/stl_map.h:927:45: note: parameter passing for argument of type 'std::map<Json::Value::CZString, Json::Value>::const_iterator' {aka 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator'} changed in GCC 7.1
927 | return _M_t._M_emplace_hint_unique(__position,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
928 | std::forward<_Pair>(__x));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp -o lib/jsoncpp.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc -fPIC -DPIC -o lib/.libs/time.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc -o lib/time.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/generator_manager.lo lib/generator_manager.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc -fPIC -DPIC -o lib/.libs/generator_manager.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc -o lib/generator_manager.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -version-info 2:0:0 -Wl,-z,relro -Wl,-z,now -lpthread -o libjellyfish-2.0.la -rpath /usr/lib/arm-linux-gnueabihf lib/rectangular_binary_matrix.lo lib/mer_dna.lo lib/storage.lo lib/allocators_mmap.lo lib/misc.lo lib/int128.lo lib/thread_exec.lo lib/jsoncpp.lo lib/time.lo lib/generator_manager.lo
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libtool: link: (cd ".libs" && rm -f "libjellyfish-2.0.so.2" && ln -s "libjellyfish-2.0.so.2.0.0" "libjellyfish-2.0.so.2")
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libtool: link: ar cr .libs/libjellyfish-2.0.a lib/rectangular_binary_matrix.o lib/mer_dna.o lib/storage.o lib/allocators_mmap.o lib/misc.o lib/int128.o lib/thread_exec.o lib/jsoncpp.o lib/time.o lib/generator_manager.o
libtool: link: ranlib .libs/libjellyfish-2.0.a
libtool: link: ( cd ".libs" && rm -f "libjellyfish-2.0.la" && ln -s "../libjellyfish-2.0.la" "libjellyfish-2.0.la" )
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/perl5/swig_wrap.cpp -fPIC -DPIC -o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o
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libtool: link: ranlib swig/perl5/.libs/jellyfish.a
libtool: link: ( cd "swig/perl5/.libs" && rm -f "jellyfish.la" && ln -s "../jellyfish.la" "jellyfish.la" )
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/python/swig_wrap.cpp -fPIC -DPIC -o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/python/swig_wrap.cpp -o swig/python/swig_python__dna_jellyfish_la-swig_wrap.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/.libs -lpthread ./.libs/libjellyfish-2.0.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: link: (cd "swig/python/.libs" && rm -f "_dna_jellyfish.so.0" && ln -s "_dna_jellyfish.so.0.0.0" "_dna_jellyfish.so.0")
libtool: link: (cd "swig/python/.libs" && rm -f "_dna_jellyfish.so" && ln -s "_dna_jellyfish.so.0.0.0" "_dna_jellyfish.so")
libtool: link: ar cr swig/python/.libs/_dna_jellyfish.a swig/python/swig_python__dna_jellyfish_la-swig_wrap.o
libtool: link: ranlib swig/python/.libs/_dna_jellyfish.a
libtool: link: ( cd "swig/python/.libs" && rm -f "_dna_jellyfish.la" && ln -s "../_dna_jellyfish.la" "_dna_jellyfish.la" )
/usr/bin/python3 -c 'import py_compile, sys; py_compile.compile(sys.argv[1], sys.argv[2])' swig/python/dna_jellyfish.py swig/python/__init__.pyc
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc
In file included from /usr/include/c++/13/vector:72,
from jellyfish/generate_sequence.cc:10:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from 'void generate_sequence_args::parse(int, char**)' at ./jellyfish/generate_sequence_cmdline.hpp:404:27:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/backtrace.o jellyfish/backtrace.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/dbg.o jellyfish/dbg.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_main.o `test -f 'unit_tests/test_main.cc' || echo './'`unit_tests/test_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_misc.o `test -f 'unit_tests/test_misc.cc' || echo './'`unit_tests/test_misc.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_rectangular_binary_matrix.o `test -f 'unit_tests/test_rectangular_binary_matrix.cc' || echo './'`unit_tests/test_rectangular_binary_matrix.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna.o `test -f 'unit_tests/test_mer_dna.cc' || echo './'`unit_tests/test_mer_dna.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_large_hash_array.o `test -f 'unit_tests/test_large_hash_array.cc' || echo './'`unit_tests/test_large_hash_array.cc
In file included from /usr/include/c++/13/map:62,
from unit_tests/test_large_hash_array.cc:5:
/usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]':
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from '{anonymous}::arrays_ptr {anonymous}::fill_array(size_t, size_t, int, int, int)' at unit_tests/test_large_hash_array.cc:163:12:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::HashArray_Collisions_Test::TestBody()' at unit_tests/test_large_hash_array.cc:130:18:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::HashArray_Collisions_Test::TestBody()' at unit_tests/test_large_hash_array.cc:138:7:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::Hash_Update_Test::TestBody()' at unit_tests/test_large_hash_array.cc:326:5:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o `test -f 'unit_tests/test_mer_overlap_sequence_parser.cc' || echo './'`unit_tests/test_mer_overlap_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_file_header.o `test -f 'unit_tests/test_file_header.cc' || echo './'`unit_tests/test_file_header.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_iterator.o `test -f 'unit_tests/test_mer_iterator.cc' || echo './'`unit_tests/test_mer_iterator.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_hash_counter.o `test -f 'unit_tests/test_hash_counter.cc' || echo './'`unit_tests/test_hash_counter.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_heap.o `test -f 'unit_tests/test_mer_heap.cc' || echo './'`unit_tests/test_mer_heap.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stream_iterator.o `test -f 'unit_tests/test_stream_iterator.cc' || echo './'`unit_tests/test_stream_iterator.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_token_ring.o `test -f 'unit_tests/test_token_ring.cc' || echo './'`unit_tests/test_token_ring.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_text_dumper.o `test -f 'unit_tests/test_text_dumper.cc' || echo './'`unit_tests/test_text_dumper.cc
In file included from /usr/include/c++/13/map:62,
from unit_tests/test_text_dumper.cc:1:
/usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]':
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::hash_adder::start(int)' at unit_tests/test_text_dumper.cc:38:17:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'void {anonymous}::hash_adder::maps_consolidate()' at unit_tests/test_text_dumper.cc:49:28,
inlined from 'virtual void {anonymous}::TextDumper_Random_Test::TestBody()' at unit_tests/test_text_dumper.cc:93:25:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_dumpers.o `test -f 'unit_tests/test_dumpers.cc' || echo './'`unit_tests/test_dumpers.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mapped_file.o `test -f 'unit_tests/test_mapped_file.cc' || echo './'`unit_tests/test_mapped_file.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_int128.o `test -f 'unit_tests/test_int128.cc' || echo './'`unit_tests/test_int128.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o `test -f 'unit_tests/test_mer_dna_bloom_counter.cc' || echo './'`unit_tests/test_mer_dna_bloom_counter.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_whole_sequence_parser.o `test -f 'unit_tests/test_whole_sequence_parser.cc' || echo './'`unit_tests/test_whole_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_allocators_mmap.o `test -f 'unit_tests/test_allocators_mmap.cc' || echo './'`unit_tests/test_allocators_mmap.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_cooperative_pool2.o `test -f 'unit_tests/test_cooperative_pool2.cc' || echo './'`unit_tests/test_cooperative_pool2.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_generator_manager.o `test -f 'unit_tests/test_generator_manager.cc' || echo './'`unit_tests/test_generator_manager.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_atomic_bits_array.o `test -f 'unit_tests/test_atomic_bits_array.cc' || echo './'`unit_tests/test_atomic_bits_array.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stdio_filebuf.o `test -f 'unit_tests/test_stdio_filebuf.cc' || echo './'`unit_tests/test_stdio_filebuf.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/bin_test_all-backtrace.o `test -f 'jellyfish/backtrace.cc' || echo './'`jellyfish/backtrace.cc
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo
libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
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libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o libgtest.la libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf ./.libs/libgtest.a -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/fastq2sam.o jellyfish/fastq2sam.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/fastq2sam jellyfish/fastq2sam.o libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/fastq2sam jellyfish/fastq2sam.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install -- install-data
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory=swig/perl5
cd swig/perl5 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
Running Mkbootstrap for jellyfish ()
g++ -c -std=c++0x -I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.0.1\" -DXS_VERSION=\"0.0.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" swig_wrap.cpp
chmod 644 "jellyfish.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
rm -f blib/arch/auto/jellyfish/jellyfish.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread -shared -L/usr/local/lib -fstack-protector-strong swig_wrap.o -o blib/arch/auto/jellyfish/jellyfish.so \
-lpthread \
chmod 755 blib/arch/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
dh_auto_build --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: /usr/bin/python3 setup.py build build_ext -L/<<PKGBUILDDIR>>/.libs
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Test data are to big for 32bit architectures thus no testing is done"
Test data are to big for 32bit architectures thus no testing is done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chrpath --delete bin/.libs/*
dh_auto_install -- install-data
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
dh_auto_install --sourcedirectory=swig/perl5
cd swig/perl5 && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
-r-xr-xr-x 1 buildd buildd 1081044 Jan 24 23:56 debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi
chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp" usr/include/jellyfish \
--movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.h" usr/include/jellyfish \
--movedev config.h usr/include/jellyfish \
debian/tmp/usr/lib/*/libjellyfish-*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf || true
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
PKGDEV=libjellyfish-2.0-dev
PKGSHL=libjellyfish-2.0-2
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv config.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf/*.la
chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Fix PACKAGE_NAME defined in config.h colliding with potential reverse
# dependencies autotools invocations, per lintian warning.
rm -vf debian/libjellyfish-2.0-dev/usr/include/jellyfish/config.h
removed 'debian/libjellyfish-2.0-dev/usr/include/jellyfish/config.h'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python3 -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
debian/rules override_dh_missing
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Python files are just installed
rm -rf debian/tmp/usr/lib/python3/dist-packages
# Necessary Perl files are just installed
rm -rf debian/tmp/usr/lib/perl/5.*
dh_missing
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/jellyfish/usr/bin/jellyfish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/test_all contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/jellyfish/usr/bin/jellyfish debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence debian/jellyfish/usr/lib/jellyfish/bin/test_all debian/jellyfish/usr/lib/jellyfish/bin/fastq2sam were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'jellyfish' in '../jellyfish_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in '../libjellyfish-2.0-2-dbgsym_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish' in '../python3-dna-jellyfish_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'jellyfish-dbgsym' in '../jellyfish-dbgsym_2.3.1-2+b10_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.3.1-2+b10_armhf.deb'.
dpkg-genbuildinfo --build=any -O../jellyfish_2.3.1-2+b10_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../jellyfish_2.3.1-2+b10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-24T23:57:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
jellyfish_2.3.1-2+b10_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 01 Jan 2024 11:43:16 +0100
Source: jellyfish (2.3.1-2)
Binary: jellyfish jellyfish-dbgsym libjellyfish-2.0-2 libjellyfish-2.0-2-dbgsym libjellyfish-2.0-dev libjellyfish-perl libjellyfish-perl-dbgsym python3-dna-jellyfish python3-dna-jellyfish-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.3.1-2+b10
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
jellyfish - count k-mers in DNA sequences
libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish)
libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish)
libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish)
python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of jellyfish)
Changes:
jellyfish (2.3.1-2+b10) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
b05cbbaee49d25674a179b06a46b023f15df65e0 6420536 jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
5e481e9d426d68da706066ed87edb72ee9f1360f 10875 jellyfish_2.3.1-2+b10_armhf.buildinfo
a9814012b93c4b2501b19f981ff0f58bc6325dc1 622072 jellyfish_2.3.1-2+b10_armhf.deb
5bd78a695a7d2adff561c6b657157d943f4c81d7 534004 libjellyfish-2.0-2-dbgsym_2.3.1-2+b10_armhf.deb
cc6d7917f645691f65cfb614b38acc6e8517445a 57772 libjellyfish-2.0-2_2.3.1-2+b10_armhf.deb
978192ab892942dc9186a06c53abfd856b509b93 127140 libjellyfish-2.0-dev_2.3.1-2+b10_armhf.deb
82d6e1de60c0b90fe1852c3a2a177d83f12ebc1a 344544 libjellyfish-perl-dbgsym_2.3.1-2+b10_armhf.deb
ca2d2b3db21031610c577c266d8ecf2a55c80dd5 56240 libjellyfish-perl_2.3.1-2+b10_armhf.deb
ec3f2d1f108bcff946f9039b326a99038eae33ec 332892 python3-dna-jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
e39a60ce8b3c4f57e3a0551be10fe0d1f04b1608 54128 python3-dna-jellyfish_2.3.1-2+b10_armhf.deb
Checksums-Sha256:
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a4406fe0b722b8617b30c61db3feeba271c786e94e13201d8576f4a45ac99a48 10875 jellyfish_2.3.1-2+b10_armhf.buildinfo
3a6f88e427d55c2402ceecd277739cfa68146e08b5dd07de8d105b849efb81c5 622072 jellyfish_2.3.1-2+b10_armhf.deb
5ece80640e89599a1fc81f07440a945aae43efa4b10af2f542406217e3ec57e2 534004 libjellyfish-2.0-2-dbgsym_2.3.1-2+b10_armhf.deb
5549cc511a78d9c5373e172b344f68fd9cdde042da2dcdda61b2741788fd4ca6 57772 libjellyfish-2.0-2_2.3.1-2+b10_armhf.deb
1f58ddb0acb2312a5973f49e31eedba258dabd994851e19c61a36dea350226f2 127140 libjellyfish-2.0-dev_2.3.1-2+b10_armhf.deb
4d77c2ff56668fc906be3e95bfd14e6ee69dc28960027b2a62272d6734e3c1ff 344544 libjellyfish-perl-dbgsym_2.3.1-2+b10_armhf.deb
8713980a98fe838764145787beecc43b3958e002a17c785a3650e31be79b3b19 56240 libjellyfish-perl_2.3.1-2+b10_armhf.deb
c438cce3a1944897fb69cab8c7bc3eb00cefbdee75d1f50c2f08723f90ddd1d9 332892 python3-dna-jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
f98bc8c4835c6624adfa97a24343aa5e60ffaa1d1ed63228984fd783450a5f54 54128 python3-dna-jellyfish_2.3.1-2+b10_armhf.deb
Files:
468db2e7463acc52bd97c1fad210ae01 6420536 debug optional jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
0547b516ece90eef9d348daa654a29d6 10875 science optional jellyfish_2.3.1-2+b10_armhf.buildinfo
24245c0eea324146b56238ea2a6e5a22 622072 science optional jellyfish_2.3.1-2+b10_armhf.deb
0d987006aeec01c7f3758ff3ef243a14 534004 debug optional libjellyfish-2.0-2-dbgsym_2.3.1-2+b10_armhf.deb
93ae5915196bf47f02cb93a8c3cb1be4 57772 libs optional libjellyfish-2.0-2_2.3.1-2+b10_armhf.deb
742de8b65f7a4ec6e3d18eeada4cacee 127140 libdevel optional libjellyfish-2.0-dev_2.3.1-2+b10_armhf.deb
2a7f78ff910c68831be95b3b154faf43 344544 debug optional libjellyfish-perl-dbgsym_2.3.1-2+b10_armhf.deb
bf36e88c292b5ea2f90dc51aacecb4e3 56240 perl optional libjellyfish-perl_2.3.1-2+b10_armhf.deb
95b01f55974dad677959b8afb11d0e86 332892 debug optional python3-dna-jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
38a38abcf8b41dbc435880212005dba6 54128 python optional python3-dna-jellyfish_2.3.1-2+b10_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 6420536 bytes: control archive=760 bytes.
520 bytes, 12 lines control
513 bytes, 5 lines md5sums
Package: jellyfish-dbgsym
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6873
Depends: jellyfish (= 2.3.1-2+b10)
Section: debug
Priority: optional
Description: debug symbols for jellyfish
Build-Ids: 0d9e2666686da29df2b8c02716f30577a10081b8 3a84530cc59f48834d4f5c926b582c59e359dba3 b32e277d047359a345f2910962cd2bfde8f085ff e7c5ae13119eabb018fe303c5465d18e9ea87950
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/0d/
-rw-r--r-- root/root 61488 2024-01-01 10:43 ./usr/lib/debug/.build-id/0d/9e2666686da29df2b8c02716f30577a10081b8.debug
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/3a/
-rw-r--r-- root/root 5412124 2024-01-01 10:43 ./usr/lib/debug/.build-id/3a/84530cc59f48834d4f5c926b582c59e359dba3.debug
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-rw-r--r-- root/root 78172 2024-01-01 10:43 ./usr/lib/debug/.build-id/e7/c5ae13119eabb018fe303c5465d18e9ea87950.debug
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 84520 2024-01-01 10:43 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/jellyfish.debug
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/share/doc/jellyfish-dbgsym -> jellyfish
jellyfish_2.3.1-2+b10_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 622072 bytes: control archive=1364 bytes.
1180 bytes, 24 lines control
988 bytes, 14 lines md5sums
Package: jellyfish
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1717
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libhts3 (>= 1.17), libjellyfish-2.0-2 (= 2.3.1-2+b10), libstdc++6 (>= 13.1)
Section: science
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/bin/
-rwxr-xr-x root/root 290908 2024-01-01 10:43 ./usr/bin/jellyfish
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/jellyfish/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/jellyfish/bin/
-rwxr-xr-x root/root 18132 2024-01-01 10:43 ./usr/lib/jellyfish/bin/fastq2sam
-rwxr-xr-x root/root 26420 2024-01-01 10:43 ./usr/lib/jellyfish/bin/generate_sequence
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drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc-base/
-rw-r--r-- root/root 987 2024-01-01 10:16 ./usr/share/doc-base/jellyfish.jellyfish
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/jellyfish/
-rw-r--r-- root/root 321 2024-01-01 10:16 ./usr/share/doc/jellyfish/README.test
-rw-r--r-- root/root 222 2024-01-01 10:43 ./usr/share/doc/jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2430 2024-01-01 10:43 ./usr/share/doc/jellyfish/changelog.Debian.gz
-rw-r--r-- root/root 284 2023-12-06 21:50 ./usr/share/doc/jellyfish/changelog.gz
-rw-r--r-- root/root 6398 2024-01-01 10:16 ./usr/share/doc/jellyfish/copyright
-rw-r--r-- root/root 221453 2023-12-06 21:50 ./usr/share/doc/jellyfish/jellyfish.pdf.gz
-rw-r--r-- root/root 1665 2024-01-01 10:16 ./usr/share/doc/jellyfish/run-unit-test
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/lintian/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 144 2024-01-01 10:16 ./usr/share/lintian/overrides/jellyfish
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/man/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/man/man1/
-rw-r--r-- root/root 4554 2024-01-01 10:43 ./usr/share/man/man1/jellyfish.1.gz
libjellyfish-2.0-2-dbgsym_2.3.1-2+b10_armhf.deb
-----------------------------------------------
new Debian package, version 2.0.
size 534004 bytes: control archive=568 bytes.
440 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libjellyfish-2.0-2-dbgsym
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 563
Depends: libjellyfish-2.0-2 (= 2.3.1-2+b10)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libjellyfish-2.0-2
Build-Ids: e2a65d4f9e1d57e2c8e2d30ea973a8e0dab2aaab
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root 565708 2024-01-01 10:43 ./usr/lib/debug/.build-id/e2/a65d4f9e1d57e2c8e2d30ea973a8e0dab2aaab.debug
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-2-dbgsym -> libjellyfish-2.0-2
libjellyfish-2.0-2_2.3.1-2+b10_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 57772 bytes: control archive=1292 bytes.
1272 bytes, 28 lines control
506 bytes, 6 lines md5sums
49 bytes, 1 lines shlibs
69 bytes, 2 lines triggers
Package: libjellyfish-2.0-2
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 172
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 -> libjellyfish-2.0.so.2.0.0
-rw-r--r-- root/root 148900 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-2/
-rw-r--r-- root/root 222 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2431 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz
-rw-r--r-- root/root 284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-2.0-2/changelog.gz
-rw-r--r-- root/root 6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-2.0-2/copyright
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/lintian/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 178 2024-01-01 10:16 ./usr/share/lintian/overrides/libjellyfish-2.0-2
libjellyfish-2.0-dev_2.3.1-2+b10_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 127140 bytes: control archive=2544 bytes.
1229 bytes, 27 lines control
4287 bytes, 57 lines md5sums
Package: libjellyfish-2.0-dev
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 600
Depends: libjellyfish-2.0-2 (= 2.3.1-2+b10)
Section: libdevel
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/include/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/include/jellyfish/
-rw-r--r-- root/root 1596 2024-01-01 10:43 ./usr/include/jellyfish/allocators_mmap.hpp
-rw-r--r-- root/root 5898 2024-01-01 10:43 ./usr/include/jellyfish/atomic_bits_array.hpp
-rw-r--r-- root/root 4770 2024-01-01 10:43 ./usr/include/jellyfish/atomic_field.hpp
-rw-r--r-- root/root 1392 2024-01-01 10:43 ./usr/include/jellyfish/atomic_gcc.hpp
-rw-r--r-- root/root 272 2024-01-01 10:43 ./usr/include/jellyfish/backtrace.hpp
-rw-r--r-- root/root 6829 2024-01-01 10:43 ./usr/include/jellyfish/binary_dumper.hpp
-rw-r--r-- root/root 3480 2024-01-01 10:43 ./usr/include/jellyfish/bloom_common.hpp
-rw-r--r-- root/root 6778 2024-01-01 10:43 ./usr/include/jellyfish/bloom_counter2.hpp
-rw-r--r-- root/root 5447 2024-01-01 10:43 ./usr/include/jellyfish/bloom_filter.hpp
-rw-r--r-- root/root 5211 2024-01-01 10:43 ./usr/include/jellyfish/circular_buffer.hpp
-rw-r--r-- root/root 2408 2024-01-01 10:43 ./usr/include/jellyfish/compare_and_swap.hpp
-rw-r--r-- root/root 7472 2024-01-01 10:43 ./usr/include/jellyfish/cooperative_pool.hpp
-rw-r--r-- root/root 8494 2024-01-01 10:43 ./usr/include/jellyfish/cooperative_pool2.hpp
-rw-r--r-- root/root 4125 2024-01-01 10:43 ./usr/include/jellyfish/cpp_array.hpp
-rw-r--r-- root/root 2742 2024-01-01 10:43 ./usr/include/jellyfish/divisor.hpp
-rw-r--r-- root/root 2710 2024-01-01 10:43 ./usr/include/jellyfish/dumper.hpp
-rw-r--r-- root/root 2257 2024-01-01 10:43 ./usr/include/jellyfish/err.hpp
-rw-r--r-- root/root 4033 2024-01-01 10:43 ./usr/include/jellyfish/file_header.hpp
-rw-r--r-- root/root 4637 2024-01-01 10:43 ./usr/include/jellyfish/generator_manager.hpp
-rw-r--r-- root/root 6814 2024-01-01 10:43 ./usr/include/jellyfish/generic_file_header.hpp
-rw-r--r-- root/root 8326 2024-01-01 10:43 ./usr/include/jellyfish/hash_counter.hpp
-rw-r--r-- root/root 7025 2024-01-01 10:43 ./usr/include/jellyfish/int128.hpp
-rw-r--r-- root/root 1118 2024-01-01 10:43 ./usr/include/jellyfish/jellyfish.hpp
-rw-r--r-- root/root 61697 2024-01-01 10:43 ./usr/include/jellyfish/json.h
-rw-r--r-- root/root 40578 2024-01-01 10:43 ./usr/include/jellyfish/large_hash_array.hpp
-rw-r--r-- root/root 7564 2024-01-01 10:43 ./usr/include/jellyfish/large_hash_iterator.hpp
-rw-r--r-- root/root 4328 2024-01-01 10:43 ./usr/include/jellyfish/locks_pthread.hpp
-rw-r--r-- root/root 5181 2024-01-01 10:43 ./usr/include/jellyfish/mapped_file.hpp
-rw-r--r-- root/root 23866 2024-01-01 10:43 ./usr/include/jellyfish/mer_dna.hpp
-rw-r--r-- root/root 1296 2024-01-01 10:43 ./usr/include/jellyfish/mer_dna_bloom_counter.hpp
-rw-r--r-- root/root 3076 2024-01-01 10:43 ./usr/include/jellyfish/mer_heap.hpp
-rw-r--r-- root/root 2588 2024-01-01 10:43 ./usr/include/jellyfish/mer_iterator.hpp
-rw-r--r-- root/root 9371 2024-01-01 10:43 ./usr/include/jellyfish/mer_overlap_sequence_parser.hpp
-rw-r--r-- root/root 3247 2024-01-01 10:43 ./usr/include/jellyfish/mer_qual_iterator.hpp
-rw-r--r-- root/root 8066 2024-01-01 10:43 ./usr/include/jellyfish/misc.hpp
-rw-r--r-- root/root 10025 2024-01-01 10:43 ./usr/include/jellyfish/offsets_key_value.hpp
-rw-r--r-- root/root 960 2024-01-01 10:43 ./usr/include/jellyfish/parser_common.hpp
-rw-r--r-- root/root 12884 2024-01-01 10:43 ./usr/include/jellyfish/rectangular_binary_matrix.hpp
-rw-r--r-- root/root 2311 2024-01-01 10:43 ./usr/include/jellyfish/sam_format.hpp
-rw-r--r-- root/root 3504 2024-01-01 10:43 ./usr/include/jellyfish/simple_circular_buffer.hpp
-rw-r--r-- root/root 3346 2024-01-01 10:43 ./usr/include/jellyfish/sorted_dumper.hpp
-rw-r--r-- root/root 5069 2024-01-01 10:43 ./usr/include/jellyfish/stdio_filebuf.hpp
-rw-r--r-- root/root 602 2024-01-01 10:43 ./usr/include/jellyfish/storage.hpp
-rw-r--r-- root/root 2036 2024-01-01 10:43 ./usr/include/jellyfish/stream_iterator.hpp
-rw-r--r-- root/root 6318 2024-01-01 10:43 ./usr/include/jellyfish/stream_manager.hpp
-rw-r--r-- root/root 2063 2024-01-01 10:43 ./usr/include/jellyfish/text_dumper.hpp
-rw-r--r-- root/root 994 2024-01-01 10:43 ./usr/include/jellyfish/thread_exec.hpp
-rw-r--r-- root/root 1884 2024-01-01 10:43 ./usr/include/jellyfish/time.hpp
-rw-r--r-- root/root 1599 2024-01-01 10:43 ./usr/include/jellyfish/token_ring.hpp
-rw-r--r-- root/root 6761 2024-01-01 10:43 ./usr/include/jellyfish/whole_sequence_parser.hpp
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 224258 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
-rw-r--r-- root/root 1008 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so -> libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 276 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/pkgconfig/jellyfish-2.0.pc
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-dev/
-rw-r--r-- root/root 222 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2431 2024-01-01 10:43 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz
-rw-r--r-- root/root 284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-2.0-dev/changelog.gz
-rw-r--r-- root/root 6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-2.0-dev/copyright
libjellyfish-perl-dbgsym_2.3.1-2+b10_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 344544 bytes: control archive=568 bytes.
437 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libjellyfish-perl-dbgsym
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 369
Depends: libjellyfish-perl (= 2.3.1-2+b10)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libjellyfish-perl
Build-Ids: 4f507f4562becab8670155f225c7bec4db79cb15
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
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drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/4f/
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drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/share/doc/libjellyfish-perl-dbgsym -> libjellyfish-perl
libjellyfish-perl_2.3.1-2+b10_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 56240 bytes: control archive=1168 bytes.
1248 bytes, 27 lines control
497 bytes, 6 lines md5sums
Package: libjellyfish-perl
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 175
Depends: perl (>= 5.36.0-10), perlapi-5.36.0, libc6 (>= 2.34), libgcc-s1 (>= 3.5)
Section: perl
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Perl bindings of jellyfish.
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/
-rw-r--r-- root/root 145348 2024-01-01 10:43 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/libjellyfish-perl/
-rw-r--r-- root/root 222 2024-01-01 10:43 ./usr/share/doc/libjellyfish-perl/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2433 2024-01-01 10:43 ./usr/share/doc/libjellyfish-perl/changelog.Debian.gz
-rw-r--r-- root/root 284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-perl/changelog.gz
-rw-r--r-- root/root 6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-perl/copyright
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/perl5/
-rw-r--r-- root/root 7414 2024-01-01 10:43 ./usr/share/perl5/jellyfish.pm
python3-dna-jellyfish-dbgsym_2.3.1-2+b10_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 332892 bytes: control archive=560 bytes.
432 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-dna-jellyfish-dbgsym
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 362
Depends: python3-dna-jellyfish (= 2.3.1-2+b10)
Section: debug
Priority: optional
Description: debug symbols for python3-dna-jellyfish
Build-Ids: f58b2878da500d7387cd7e847b22e981fd9a5181
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/debug/.build-id/f5/
-rw-r--r-- root/root 359780 2024-01-01 10:43 ./usr/lib/debug/.build-id/f5/8b2878da500d7387cd7e847b22e981fd9a5181.debug
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-01 10:43 ./usr/share/doc/python3-dna-jellyfish-dbgsym -> python3-dna-jellyfish
python3-dna-jellyfish_2.3.1-2+b10_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 54128 bytes: control archive=1600 bytes.
1309 bytes, 26 lines control
867 bytes, 9 lines md5sums
289 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: python3-dna-jellyfish
Source: jellyfish (2.3.1-2)
Version: 2.3.1-2+b10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 176
Depends: python3 (<< 3.12), python3 (>= 3.11~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libjellyfish-2.0-2 (>= 2.3.1), libstdc++6 (>= 13.1)
Section: python
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Python bindings of jellyfish.
drwxr-xr-x root/root 0 2024-01-01 10:43 ./
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/python3/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root 138736 2024-01-01 10:43 ./usr/lib/python3/dist-packages/_dna_jellyfish.cpython-311-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/
-rw-r--r-- root/root 127 2024-01-01 10:43 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2024-01-01 10:43 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/dependency_links.txt
-rw-r--r-- root/root 29 2024-01-01 10:43 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/top_level.txt
-rw-r--r-- root/root 12643 2024-01-01 10:43 ./usr/lib/python3/dist-packages/dna_jellyfish.py
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-01 10:43 ./usr/share/doc/python3-dna-jellyfish/
-rw-r--r-- root/root 222 2024-01-01 10:43 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2431 2024-01-01 10:43 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.gz
-rw-r--r-- root/root 284 2023-12-06 21:50 ./usr/share/doc/python3-dna-jellyfish/changelog.gz
-rw-r--r-- root/root 6398 2024-01-01 10:16 ./usr/share/doc/python3-dna-jellyfish/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 127508
Build-Time: 614
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 430
Job: jellyfish_2.3.1-2
Machine Architecture: armhf
Package: jellyfish
Package-Time: 1063
Source-Version: 2.3.1-2
Space: 127508
Status: successful
Version: 2.3.1-2+b10
--------------------------------------------------------------------------------
Finished at 2024-01-24T23:57:17Z
Build needed 00:17:43, 127508k disk space