jellyfish →
2.3.0-15+b3 →
armhf → 2023-02-01 17:11:16
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| jellyfish 2.3.0-15+b3 (armhf) Wed, 01 Feb 2023 16:48:09 +0000 |
+==============================================================================+
Package: jellyfish
Version: 2.3.0-15+b3
Source Version: 2.3.0-15
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-b6358ba9-3f09-4210-81b1-4cac1a824d1b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.4 MB]
Fetched 28.1 MB in 12s (2371 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 698 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main jellyfish 2.3.0-15 (dsc) [3224 B]
Get:2 http://172.17.4.1/private bookworm-staging/main jellyfish 2.3.0-15 (tar) [679 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main jellyfish 2.3.0-15 (diff) [15.4 kB]
Fetched 698 kB in 0s (4991 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish-lZEpxx/jellyfish-2.3.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-lZEpxx' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kByAsP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kByAsP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kByAsP/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3732 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 90 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (35.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-python, perl, chrpath, libhts-dev, dos2unix, samtools
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-python, perl, chrpath, libhts-dev, dos2unix, samtools
dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<<BUILDDIR>>/resolver-kByAsP/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ Packages [667 B]
Fetched 2588 B in 1s (3441 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install jellyfish build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libhts-dev
libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore
liblzma-dev liblzma5 libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses6
libncursesw6 libnghttp2-14 libpipeline1 libpkgconf3 libproc2-0 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib librtmp1
libruby libruby3.1 libssh2-1 libssl3 libsub-override-perl libtinfo6 libtool
libuchardet0 libxml2 libyaml-0-2 m4 man-db media-types ncurses-base
ncurses-bin openssl pkg-config pkgconf pkgconf-bin po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3.11 python3.11-dev python3.11-minimal rake ruby
ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1
rubygems-integration samtools swig swig4.0 time xz-utils yaggo zlib1g-dev
Suggested packages:
gnu-standards autoconf-doc dh-make flit python3-build python3-tomli
python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv
python3.11-doc binfmt-support ri ruby-dev bundler cwltool swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc zip fonts-lato
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libhts-dev
libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore
liblzma-dev libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses6
libnghttp2-14 libpipeline1 libpkgconf3 libproc2-0 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib librtmp1 libruby libruby3.1
libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4
man-db media-types openssl pkg-config pkgconf pkgconf-bin po-debconf procps
python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal
rake ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc
ruby3.1 rubygems-integration samtools sbuild-build-depends-jellyfish-dummy
swig swig4.0 time yaggo zlib1g-dev
The following packages will be upgraded:
liblzma5 libncursesw6 libssl3 libtinfo6 ncurses-base ncurses-bin xz-utils
7 upgraded, 103 newly installed, 0 to remove and 83 not upgraded.
Need to get 49.8 MB of archives.
After this operation, 189 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kByAsP/apt_archive ./ sbuild-build-depends-jellyfish-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf ncurses-bin armhf 6.4-2 [414 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf ncurses-base all 6.4-2 [261 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf autoconf-archive all 20220903-3 [775 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-2 [1614 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.1-2 [25.7 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.4.1-0.0 [192 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.4-2 [317 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.4-2 [106 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.1-2 [8704 B]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.1-2 [25.4 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libproc2-0 armhf 2:4.0.2-3 [53.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:4.0.2-3 [679 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf bc armhf 1.07.1-3 [101 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-2 [1349 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf time armhf 1.9-0.2 [47.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.4.1-0.0 [435 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-2 [256 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dos2unix armhf 7.4.3-1 [425 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-2 [328 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.87.0-2 [405 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.14-1 [48.1 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20221030-2 [76.2 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.4.1-0.0 [247 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libhts-dev armhf 1.16+ds-3 [1479 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.4-2 [80.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11 armhf 3.11.1-2 [1666 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-dev armhf 3.11.1-2 [3375 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.11.1-2 [8936 B]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.11.1-2 [1068 B]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf ruby3.1 armhf 3.1.2-6 [663 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf ruby-rubygems all 3.3.15-2 [293 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf ruby armhf 1:3.1 [5868 B]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf ruby-webrick all 1.7.0-4 [50.9 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf ruby-sdbm armhf 1.0.0-5+rpi1 [15.9 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libruby3.1 armhf 3.1.2-6 [5099 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libruby armhf 1:3.1 [4968 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.11.1-2 [1064 B]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf python3.11-dev armhf 3.11.1-2 [618 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.11.1-2 [26.2 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.11.1-2 [1064 B]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf samtools armhf 1.16.1-1 [559 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.1.0-0.2 [1220 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.1.0-0.2 [321 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf yaggo all 1.5.10-6 [21.2 kB]
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Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:armhf (0.2.5-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up libnghttp2-14:armhf (1.51.0-1) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up bc (1.07.1-3) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-2) ...
Setting up autoconf-archive (20220903-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libexpat1-dev:armhf (2.5.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4-2) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up xz-utils (5.4.1-0.0) ...
Setting up libproc2-0:armhf (2:4.0.2-3) ...
Setting up autopoint (0.21-10) ...
Setting up d-shlibs (0.104) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up autoconf (2.71-3) ...
Setting up ruby-webrick (1.7.0-4) ...
Setting up liblzma-dev:armhf (5.4.1-0.0) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up procps (2:4.0.2-3) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up dos2unix (7.4.3-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up swig4.0 (4.1.0-0.2) ...
Setting up openssl (3.0.7-2) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up libdeflate-dev:armhf (1.14-1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
Setting up chrpath (0.16-2) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-10) ...
Setting up swig (4.1.0-0.2) ...
Setting up libtool (2.4.7-5) ...
Setting up libpython3.11-stdlib:armhf (3.11.1-2) ...
Setting up libedit2:armhf (3.1-20221030-2) ...
Setting up libcurl3-gnutls:armhf (7.87.0-2) ...
Setting up libcurl4-gnutls-dev:armhf (7.87.0-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up libjs-sphinxdoc (5.3.0-3) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libpython3-stdlib:armhf (3.11.1-2) ...
Setting up python3.11 (3.11.1-2) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up libpython3.11:armhf (3.11.1-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhts-dev:armhf (1.16+ds-3) ...
Setting up python3 (3.11.1-2) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up samtools (1.16.1-1) ...
Setting up libpython3.11-dev:armhf (3.11.1-2) ...
Setting up python3-lib2to3 (3.10.8-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up libpython3-dev:armhf (3.11.1-2) ...
Setting up python3.11-dev (3.11.1-2) ...
Setting up python3-all (3.11.1-2) ...
Setting up debhelper (13.11.4) ...
Setting up libpython3-all-dev:armhf (3.11.1-2) ...
Setting up python3-dev (3.11.1-2) ...
Setting up python3-all-dev (3.11.1-2) ...
Setting up rake (13.0.6-3) ...
Setting up ruby3.1 (3.1.2-6) ...
Setting up libruby3.1:armhf (3.1.2-6) ...
Setting up libruby:armhf (1:3.1) ...
Setting up ruby-rubygems (3.3.15-2) ...
Setting up ruby (1:3.1) ...
Setting up yaggo (1.5.10-6) ...
Setting up ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 bc_1.07.1-3 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 chrpath_0.16-2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 dos2unix_7.4.3-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-10+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.50.20221208-5+rpi1 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libcurl3-gnutls_7.87.0-2 libcurl4-gnutls-dev_7.87.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libedit2_3.1-20221030-2 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-10+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.4.1-0.0 liblzma5_5.4.1-0.0 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses6_6.4-2 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libproc2-0_2:4.0.2-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.11.1-2 libpython3-dev_3.11.1-2 libpython3-stdlib_3.11.1-2 libpython3.11_3.11.1-2 libpython3.11-dev_3.11.1-2 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby_1:3.1 libruby3.1_3.1.2-6 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-2 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-2 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.4-2 ncurses-bin_6.4-2 netbase_6.4 openssl_3.0.7-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.2-3 python3_3.11.1-2 python3-all_3.11.1-2 python3-all-dev_3.11.1-2 python3-dev_3.11.1-2 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-2 python3.11_3.11.1-2 python3.11-dev_3.11.1-2 python3.11-minimal_3.11.1-2 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 ruby_1:3.1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.3.15-2 ruby-sdbm_1.0.0-5+rpi1 ruby-webrick_1.7.0-4 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-6 rubygems-integration_1.18 samtools_1.16.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 swig_4.1.0-0.2 swig4.0_4.1.0-0.2 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 time_1.9-0.2 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.1-0.0 yaggo_1.5.10-6 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.geIy4756/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep 28 20:08:02 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./jellyfish_2.3.0-15.dsc
dpkg-source: info: extracting jellyfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish_2.3.0.orig.tar.gz
dpkg-source: info: unpacking jellyfish_2.3.0-15.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying manpage_whatis_entry.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying fix_replacement_of_-L_option.patch
dpkg-source: info: applying test_needs_bash
dpkg-source: info: applying python3
dpkg-source: info: applying fix-32-bit.patch
dpkg-source: info: applying fix-autoreconf.patch
dpkg-source: info: applying gcc-12.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.3.0-15+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b6358ba9-3f09-4210-81b1-4cac1a824d1b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package jellyfish
dpkg-buildpackage: info: source version 2.3.0-15+b3
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
mv debian/tmp_save_tests/* tests ; \
rmdir debian/tmp_save_tests ; \
fi
rm -f tests/compat.sh
rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py
rm -f swig/perl5/blib/arch/auto/jellyfish/jellyfish.so
rm -f swig/perl5/blib/bin/.exists
rm -f swig/perl5/blib/lib/.exists
rm -f swig/perl5/blib/lib/auto/jellyfish/.exists
rm -f swig/perl5/blib/man1/.exists
rm -f swig/perl5/blib/man3/.exists
rm -f swig/perl5/blib/script/.exists
rm -f swig/perl5/jellyfish.bs
rm -f swig/perl5/pm_to_blib
rm -rf swig/perl5/MYMETA.json swig/perl5/MYMETA.yml swig/perl5/Makefile swig/perl5/blib/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch --with python3
debian/rules override_dh_update_autotools_config
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# use python configuration from autoconf-archive
mv m4/m4-ax_python_devel.m4 /tmp
dh_update_autotools_config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:8: You should run autoupdate.
m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:8: the top level
configure.ac:65: warning: The macro `AC_TRY_RUN' is obsolete.
configure.ac:65: You should run autoupdate.
./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
m4/m4-ax_ext.m4:49: AX_EXT is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
configure.ac:65: the top level
configure.ac:107: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:107: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:107: the top level
configure.ac:118: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:118: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:118: the top level
configure.ac:121: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:121: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:121: the top level
configure.ac:124: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:124: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:124: the top level
configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:127: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:127: the top level
configure.ac:131: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:131: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:131: the top level
configure.ac:135: warning: The macro `SWIG_ENABLE_CXX' is obsolete.
configure.ac:135: You should run autoupdate.
m4/m4-ax_swig_enable_cxx.m4:48: SWIG_ENABLE_CXX is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
configure.ac:135: the top level
configure.ac:145: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:145: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:145: the top level
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking 32-bit host C ABI... yes
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib
checking for htslib... yes
checking for samtools... /usr/bin/samtools
checking for unix2dos... /usr/bin/unix2dos
checking for md5sum... md5sum
checking for yaggo... /usr/bin/yaggo
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for __int128... no
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for sys/syscall.h... yes
checking for siginfo_t.si_int... yes
checking for swig... /usr/bin/swig
checking SWIG version... 4.1.0
checking for SWIG library... /usr/share/swig4.0
checking for python... /usr/bin/python3
checking for a version of Python >= '2.1.0'... yes
checking for the sysconfig Python package... yes
checking for Python include path... -I/usr/include/python3.11
checking for Python library path... -L/usr/lib/arm-linux-gnueabihf -lpython3.11
checking for Python site-packages path... /usr/lib/python3.11/site-packages
checking for Python platform specific site-packages path... /usr/lib/python3.11/site-packages
checking python extra libraries... -ldl -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
checking for perl... /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl extension include path... /usr/lib/arm-linux-gnueabihf/perl/5.36/CORE
checking for Perl extension target directory... /usr/lib/perl/5.36.0
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for posix_memalign... yes
checking for aligned_alloc... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_configure --sourcedirectory=swig/perl5
cd swig/perl5 && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread"
-I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -lpthread
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
Warning (mostly harmless): No library found for -ljellyfish-2.0
Generating a Unix-style Makefile
Writing Makefile for jellyfish
Writing MYMETA.yml and MYMETA.json
dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/<<PKGBUILDDIR>>/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running config
mv /tmp/m4-ax_python_devel.m4 m4
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo
/usr/bin/swig -c++ -python -I./../include -o swig/python/swig_wrap.cpp swig/jellyfish.i
/usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/count_main.o sub_commands/count_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/info_main.o sub_commands/info_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/dump_main.o sub_commands/dump_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/histo_main.o sub_commands/histo_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/stats_main.o sub_commands/stats_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/merge_main.o sub_commands/merge_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/bc_main.o sub_commands/bc_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/query_main.o sub_commands/query_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/cite_main.o sub_commands/cite_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/mem_main.o sub_commands/mem_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/merge_files.o jellyfish/merge_files.cc
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc -fPIC -DPIC -o lib/.libs/rectangular_binary_matrix.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc -o lib/rectangular_binary_matrix.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/mer_dna.lo lib/mer_dna.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc -fPIC -DPIC -o lib/.libs/mer_dna.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc -o lib/mer_dna.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/storage.lo lib/storage.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc -fPIC -DPIC -o lib/.libs/storage.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc -o lib/storage.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/allocators_mmap.lo lib/allocators_mmap.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc -fPIC -DPIC -o lib/.libs/allocators_mmap.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc -o lib/allocators_mmap.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/misc.lo lib/misc.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc -fPIC -DPIC -o lib/.libs/misc.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc -o lib/misc.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/int128.lo lib/int128.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc -fPIC -DPIC -o lib/.libs/int128.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc -o lib/int128.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/thread_exec.lo lib/thread_exec.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc -fPIC -DPIC -o lib/.libs/thread_exec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc -o lib/thread_exec.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o lib/jsoncpp.lo lib/jsoncpp.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp -fPIC -DPIC -o lib/.libs/jsoncpp.o
In file included from /usr/include/c++/12/map:60,
from ./include/jellyfish/json.h:331,
from lib/jsoncpp.cpp:76:
/usr/include/c++/12/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<const Json::Value::CZString, Json::Value>&}; _Key = Json::Value::CZString; _Val = std::pair<const Json::Value::CZString, Json::Value>; _KeyOfValue = std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator' changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]',
inlined from 'Json::Value& Json::Value::operator[](ArrayIndex)' at lib/jsoncpp.cpp:2622:28:
/usr/include/c++/12/bits/stl_map.h:925:45: note: parameter passing for argument of type 'std::map<Json::Value::CZString, Json::Value>::const_iterator' {aka 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator'} changed in GCC 7.1
925 | return _M_t._M_emplace_hint_unique(__position,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
926 | std::forward<_Pair>(__x));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]',
inlined from 'Json::Value& Json::Value::resolveReference(const char*, bool)' at lib/jsoncpp.cpp:2687:28:
/usr/include/c++/12/bits/stl_map.h:925:45: note: parameter passing for argument of type 'std::map<Json::Value::CZString, Json::Value>::const_iterator' {aka 'std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator'} changed in GCC 7.1
925 | return _M_t._M_emplace_hint_unique(__position,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
926 | std::forward<_Pair>(__x));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp -o lib/jsoncpp.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc -fPIC -DPIC -o lib/.libs/time.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc -o lib/time.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc -fPIC -DPIC -o lib/.libs/generator_manager.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc -o lib/generator_manager.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -version-info 2:0:0 -Wl,-z,relro -Wl,-z,now -lpthread -o libjellyfish-2.0.la -rpath /usr/lib/arm-linux-gnueabihf lib/rectangular_binary_matrix.lo lib/mer_dna.lo lib/storage.lo lib/allocators_mmap.lo lib/misc.lo lib/int128.lo lib/thread_exec.lo lib/jsoncpp.lo lib/time.lo lib/generator_manager.lo
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libtool: link: (cd ".libs" && rm -f "libjellyfish-2.0.so.2" && ln -s "libjellyfish-2.0.so.2.0.0" "libjellyfish-2.0.so.2")
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libtool: link: ranlib .libs/libjellyfish-2.0.a
libtool: link: ( cd ".libs" && rm -f "libjellyfish-2.0.la" && ln -s "../libjellyfish-2.0.la" "libjellyfish-2.0.la" )
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c swig/python/swig_wrap.cpp -fPIC -DPIC -o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o
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libtool: link: (cd "swig/python/.libs" && rm -f "_dna_jellyfish.so" && ln -s "_dna_jellyfish.so.0.0.0" "_dna_jellyfish.so")
libtool: link: ar cr swig/python/.libs/_dna_jellyfish.a swig/python/swig_python__dna_jellyfish_la-swig_wrap.o
libtool: link: ranlib swig/python/.libs/_dna_jellyfish.a
libtool: link: ( cd "swig/python/.libs" && rm -f "_dna_jellyfish.la" && ln -s "../_dna_jellyfish.la" "_dna_jellyfish.la" )
/usr/bin/python3 -c 'import py_compile, sys; py_compile.compile(sys.argv[1], sys.argv[2])' swig/python/dna_jellyfish.py swig/python/__init__.pyc
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc
In file included from /usr/include/c++/12/vector:70,
from jellyfish/generate_sequence.cc:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void generate_sequence_args::parse(int, char**)' at ./jellyfish/generate_sequence_cmdline.hpp:404:27:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/backtrace.o jellyfish/backtrace.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/dbg.o jellyfish/dbg.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_main.o `test -f 'unit_tests/test_main.cc' || echo './'`unit_tests/test_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_misc.o `test -f 'unit_tests/test_misc.cc' || echo './'`unit_tests/test_misc.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_rectangular_binary_matrix.o `test -f 'unit_tests/test_rectangular_binary_matrix.cc' || echo './'`unit_tests/test_rectangular_binary_matrix.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna.o `test -f 'unit_tests/test_mer_dna.cc' || echo './'`unit_tests/test_mer_dna.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_large_hash_array.o `test -f 'unit_tests/test_large_hash_array.cc' || echo './'`unit_tests/test_large_hash_array.cc
In file included from /usr/include/c++/12/map:60,
from unit_tests/test_large_hash_array.cc:5:
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from '{anonymous}::arrays_ptr {anonymous}::fill_array(size_t, size_t, int, int, int)' at unit_tests/test_large_hash_array.cc:163:12:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::HashArray_Collisions_Test::TestBody()' at unit_tests/test_large_hash_array.cc:130:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::HashArray_Collisions_Test::TestBody()' at unit_tests/test_large_hash_array.cc:138:7:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::Hash_Update_Test::TestBody()' at unit_tests/test_large_hash_array.cc:326:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o `test -f 'unit_tests/test_mer_overlap_sequence_parser.cc' || echo './'`unit_tests/test_mer_overlap_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_file_header.o `test -f 'unit_tests/test_file_header.cc' || echo './'`unit_tests/test_file_header.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_iterator.o `test -f 'unit_tests/test_mer_iterator.cc' || echo './'`unit_tests/test_mer_iterator.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_hash_counter.o `test -f 'unit_tests/test_hash_counter.cc' || echo './'`unit_tests/test_hash_counter.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_heap.o `test -f 'unit_tests/test_mer_heap.cc' || echo './'`unit_tests/test_mer_heap.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stream_iterator.o `test -f 'unit_tests/test_stream_iterator.cc' || echo './'`unit_tests/test_stream_iterator.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_token_ring.o `test -f 'unit_tests/test_token_ring.cc' || echo './'`unit_tests/test_token_ring.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_text_dumper.o `test -f 'unit_tests/test_text_dumper.cc' || echo './'`unit_tests/test_text_dumper.cc
In file included from /usr/include/c++/12/map:60,
from unit_tests/test_text_dumper.cc:1:
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'virtual void {anonymous}::hash_adder::start(int)' at unit_tests/test_text_dumper.cc:38:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]',
inlined from 'void {anonymous}::hash_adder::maps_consolidate()' at unit_tests/test_text_dumper.cc:49:28,
inlined from 'virtual void {anonymous}::TextDumper_Random_Test::TestBody()' at unit_tests/test_text_dumper.cc:93:25:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_dumpers.o `test -f 'unit_tests/test_dumpers.cc' || echo './'`unit_tests/test_dumpers.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mapped_file.o `test -f 'unit_tests/test_mapped_file.cc' || echo './'`unit_tests/test_mapped_file.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_int128.o `test -f 'unit_tests/test_int128.cc' || echo './'`unit_tests/test_int128.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o `test -f 'unit_tests/test_mer_dna_bloom_counter.cc' || echo './'`unit_tests/test_mer_dna_bloom_counter.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_whole_sequence_parser.o `test -f 'unit_tests/test_whole_sequence_parser.cc' || echo './'`unit_tests/test_whole_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_allocators_mmap.o `test -f 'unit_tests/test_allocators_mmap.cc' || echo './'`unit_tests/test_allocators_mmap.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_cooperative_pool2.o `test -f 'unit_tests/test_cooperative_pool2.cc' || echo './'`unit_tests/test_cooperative_pool2.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_generator_manager.o `test -f 'unit_tests/test_generator_manager.cc' || echo './'`unit_tests/test_generator_manager.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_atomic_bits_array.o `test -f 'unit_tests/test_atomic_bits_array.cc' || echo './'`unit_tests/test_atomic_bits_array.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stdio_filebuf.o `test -f 'unit_tests/test_stdio_filebuf.cc' || echo './'`unit_tests/test_stdio_filebuf.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/bin_test_all-backtrace.o `test -f 'jellyfish/backtrace.cc' || echo './'`jellyfish/backtrace.cc
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
unit_tests/gtest/src/gtest-all.cc: In function 'bool testing::internal::StackGrowsDown()':
unit_tests/gtest/src/gtest-all.cc:7485:24: warning: 'dummy' may be used uninitialized [-Wmaybe-uninitialized]
7485 | StackLowerThanAddress(&dummy, &result);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
unit_tests/gtest/src/gtest-all.cc:7477:6: note: by argument 1 of type 'const void*' to 'void testing::internal::StackLowerThanAddress(const void*, bool*)' declared here
7477 | void StackLowerThanAddress(const void* ptr, bool* result) {
| ^~~~~~~~~~~~~~~~~~~~~
unit_tests/gtest/src/gtest-all.cc:7483:7: note: 'dummy' declared here
7483 | int dummy;
| ^~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo
libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
libtool: link: ranlib .libs/libgtest.a
libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o libgtest.la libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf ./.libs/libgtest.a -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/fastq2sam.o jellyfish/fastq2sam.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -lpthread -o bin/fastq2sam jellyfish/fastq2sam.o libjellyfish-2.0.la
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/fastq2sam jellyfish/fastq2sam.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install -- install-data
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory=swig/perl5
cd swig/perl5 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
Running Mkbootstrap for jellyfish ()
g++ -c -std=c++0x -I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.0.1\" -DXS_VERSION=\"0.0.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" swig_wrap.cpp
chmod 644 "jellyfish.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
rm -f blib/arch/auto/jellyfish/jellyfish.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread -shared -L/usr/local/lib -fstack-protector-strong swig_wrap.o -o blib/arch/auto/jellyfish/jellyfish.so \
-lpthread \
chmod 755 blib/arch/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
dh_auto_build --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build build_ext -L/<<PKGBUILDDIR>>/.libs
/<<PKGBUILDDIR>>/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running build
running build_py
copying dna_jellyfish.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dna_jellyfish/build
running build_ext
building '_dna_jellyfish' extension
creating build
creating build/temp.linux-armhf-3.11
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0 -I/usr/include/python3.11 -c swig_wrap.cpp -o build/temp.linux-armhf-3.11/swig_wrap.o -std=c++0x
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -lpthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.11/swig_wrap.o -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/<<PKGBUILDDIR>>/.libs -ljellyfish-2.0 -lpthread -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dna_jellyfish/build/_dna_jellyfish.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Test data are to big for 32bit architectures thus no testing is done"
Test data are to big for 32bit architectures thus no testing is done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chrpath --delete bin/.libs/*
dh_auto_install -- install-data
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool" --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
/usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish
/<<PKGBUILDDIR>>/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running install
running build
running build_py
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish
creating /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr
creating /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dna_jellyfish/build/dna_jellyfish.py -> /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dna_jellyfish/build/_dna_jellyfish.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11/dist-packages/dna_jellyfish.py to dna_jellyfish.cpython-311.pyc
running install_egg_info
Writing /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish/usr/lib/python3.11/dist-packages/dna_jellyfish-0.0.1.egg-info
dh_auto_install --sourcedirectory=swig/perl5
cd swig/perl5 && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
-r-xr-xr-x 1 buildd buildd 1142956 Feb 1 17:09 debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi
chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp" usr/include/jellyfish \
--movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.h" usr/include/jellyfish \
--movedev config.h usr/include/jellyfish \
debian/tmp/usr/lib/*/libjellyfish-*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf || true
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
PKGDEV=libjellyfish-2.0-dev
PKGSHL=libjellyfish-2.0-2
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv config.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf/*.la
chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python3 -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
debian/rules override_dh_missing
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Python files are just installed
rm -rf debian/tmp/usr/lib/python3/dist-packages
# Necessary Perl files are just installed
rm -rf debian/tmp/usr/lib/perl/5.*
dh_missing
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/test_all contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/fastq2sam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/bin/jellyfish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/jellyfish/usr/lib/jellyfish/bin/test_all debian/jellyfish/usr/lib/jellyfish/bin/fastq2sam debian/jellyfish/usr/bin/jellyfish debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in '../libjellyfish-2.0-2-dbgsym_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'jellyfish' in '../jellyfish_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish' in '../python3-dna-jellyfish_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'jellyfish-dbgsym' in '../jellyfish-dbgsym_2.3.0-15+b3_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.3.0-15+b3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../jellyfish_2.3.0-15+b3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../jellyfish_2.3.0-15+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-01T17:11:09Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
jellyfish_2.3.0-15+b3_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 28 Sep 2022 21:48:56 +0200
Source: jellyfish (2.3.0-15)
Binary: jellyfish jellyfish-dbgsym libjellyfish-2.0-2 libjellyfish-2.0-2-dbgsym libjellyfish-2.0-dev libjellyfish-perl libjellyfish-perl-dbgsym python3-dna-jellyfish python3-dna-jellyfish-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.3.0-15+b3
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
jellyfish - count k-mers in DNA sequences
libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish)
libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish)
libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish)
python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of jellyfish)
Changes:
jellyfish (2.3.0-15+b3) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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df02e982ab25cbee138349a320814899337063ad 10575 jellyfish_2.3.0-15+b3_armhf.buildinfo
3a8268be7dde690d125378531085f15cdef11692 620504 jellyfish_2.3.0-15+b3_armhf.deb
ce852a280902bde7548f80c6672f2fb192e2b727 532728 libjellyfish-2.0-2-dbgsym_2.3.0-15+b3_armhf.deb
1f6d37744f29736a3dc6a439d6f6dc455797c8eb 54468 libjellyfish-2.0-2_2.3.0-15+b3_armhf.deb
20b3915cde3f8c78ce8adab3c6b367f9436bd041 126424 libjellyfish-2.0-dev_2.3.0-15+b3_armhf.deb
a908fa3ade7149d75e147eda4acff03300b92167 352056 libjellyfish-perl-dbgsym_2.3.0-15+b3_armhf.deb
cd7635d827546f7674ffcc3da20ce025a8d806f9 55224 libjellyfish-perl_2.3.0-15+b3_armhf.deb
1064251e3637b6d9d5d469b33e031da0688ee49a 339816 python3-dna-jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
73232c215e76acd311e8738ca066c6c01c3a17dc 53124 python3-dna-jellyfish_2.3.0-15+b3_armhf.deb
Checksums-Sha256:
2c697e4ca9cd936dd14e44b14e18f6f5526de2ae61de0466e515dd818819d6cf 7045080 jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
ff5743313f5f3d6aa874e57a0d09f3ac790e103222712e431d369d8bbe4041e1 10575 jellyfish_2.3.0-15+b3_armhf.buildinfo
1792dcfd989e7ded5d21840c2e8da184073975dd22f26bf5a0138f02f6aeb787 620504 jellyfish_2.3.0-15+b3_armhf.deb
018570c8f189f1b87c9d3025820a9bbe3d9966f2cdb46a3e7e89f24835554e23 532728 libjellyfish-2.0-2-dbgsym_2.3.0-15+b3_armhf.deb
b7efb00a043d2f8697494eac71214b4081dc81b4e46e4a74c2f958cc225016e7 54468 libjellyfish-2.0-2_2.3.0-15+b3_armhf.deb
eb5fdebd226de0ad6a73d4d70527f0947031f0e9eaf2af257ad895c51191e401 126424 libjellyfish-2.0-dev_2.3.0-15+b3_armhf.deb
43e6ea0231d88f39baa9dc68b3297d8ff0ea7dcd137d103f9e5efbac6beda88f 352056 libjellyfish-perl-dbgsym_2.3.0-15+b3_armhf.deb
62d207c13f8679823df35a946aa31a789ad02557190b38985a21f5241a735cbc 55224 libjellyfish-perl_2.3.0-15+b3_armhf.deb
da1011d248f1ce323f6fb71121124d8fbc90816d778b8954c04b45f96d57ce86 339816 python3-dna-jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
1c9827e74e3f92e271b04a2cacbc6a52fb4963d5676a4c643d0331c869072706 53124 python3-dna-jellyfish_2.3.0-15+b3_armhf.deb
Files:
1821b590099dedb0c263647129f4e597 7045080 debug optional jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
f3ffe41f6497200f18642dc1d1fe7d96 10575 science optional jellyfish_2.3.0-15+b3_armhf.buildinfo
178e9b4ac6d5f41e51ba37e82360d9ff 620504 science optional jellyfish_2.3.0-15+b3_armhf.deb
28f78476829ffa6072aceb1da04bd521 532728 debug optional libjellyfish-2.0-2-dbgsym_2.3.0-15+b3_armhf.deb
a9841b7882eea47c6cac858c68f634c4 54468 libs optional libjellyfish-2.0-2_2.3.0-15+b3_armhf.deb
becf28e44da9f399098a42cc2b963206 126424 libdevel optional libjellyfish-2.0-dev_2.3.0-15+b3_armhf.deb
9df7236680761bed935a49de4490d635 352056 debug optional libjellyfish-perl-dbgsym_2.3.0-15+b3_armhf.deb
e205be3d8ac38d3a2167876f4c0e587e 55224 perl optional libjellyfish-perl_2.3.0-15+b3_armhf.deb
7aba139d95b3af9aa26b2ed586c7317d 339816 debug optional python3-dna-jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
5581aa5111298e364f0c578b72897df5 53124 python optional python3-dna-jellyfish_2.3.0-15+b3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 7045080 bytes: control archive=760 bytes.
521 bytes, 12 lines control
513 bytes, 5 lines md5sums
Package: jellyfish-dbgsym
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7548
Depends: jellyfish (= 2.3.0-15+b3)
Section: debug
Priority: optional
Description: debug symbols for jellyfish
Build-Ids: b8624df9bbdf3db4c7fbe1bf6ccff4b2e4e5ba1f de7f02ba60f2969a10e49d0fcbd40bf1fa6b9bf0 decd3b4f76700a5c997b374706456c369159ba13 fcb03bb1e09948296effbbaf50e7d336e4a29c35
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/b8/
-rw-r--r-- root/root 62200 2022-09-28 19:48 ./usr/lib/debug/.build-id/b8/624df9bbdf3db4c7fbe1bf6ccff4b2e4e5ba1f.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 80252 2022-09-28 19:48 ./usr/lib/debug/.build-id/de/7f02ba60f2969a10e49d0fcbd40bf1fa6b9bf0.debug
-rw-r--r-- root/root 1411228 2022-09-28 19:48 ./usr/lib/debug/.build-id/de/cd3b4f76700a5c997b374706456c369159ba13.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root 6070716 2022-09-28 19:48 ./usr/lib/debug/.build-id/fc/b03bb1e09948296effbbaf50e7d336e4a29c35.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 87496 2022-09-28 19:48 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/jellyfish.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/share/doc/jellyfish-dbgsym -> jellyfish
jellyfish_2.3.0-15+b3_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 620504 bytes: control archive=1352 bytes.
1261 bytes, 26 lines control
916 bytes, 13 lines md5sums
Package: jellyfish
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1861
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libjellyfish-2.0-2 (= 2.3.0-15+b3), libstdc++6 (>= 11)
Breaks: jellyfish-examples (<< 2.3.0-7)
Replaces: jellyfish-examples (<< 2.3.0-7)
Section: science
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/bin/
-rwxr-xr-x root/root 331868 2022-09-28 19:48 ./usr/bin/jellyfish
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/jellyfish/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/jellyfish/bin/
-rwxr-xr-x root/root 67284 2022-09-28 19:48 ./usr/lib/jellyfish/bin/fastq2sam
-rwxr-xr-x root/root 67380 2022-09-28 19:48 ./usr/lib/jellyfish/bin/generate_sequence
-rwxr-xr-x root/root 1181460 2022-09-28 19:48 ./usr/lib/jellyfish/bin/test_all
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc-base/
-rw-r--r-- root/root 987 2022-09-28 19:48 ./usr/share/doc-base/jellyfish.jellyfish
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/jellyfish/
-rw-r--r-- root/root 321 2022-09-28 19:48 ./usr/share/doc/jellyfish/README.test
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/share/doc/jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1816 2022-09-28 19:48 ./usr/share/doc/jellyfish/changelog.Debian.gz
-rw-r--r-- root/root 284 2019-07-13 12:16 ./usr/share/doc/jellyfish/changelog.gz
-rw-r--r-- root/root 6398 2022-09-28 19:48 ./usr/share/doc/jellyfish/copyright
-rw-r--r-- root/root 221453 2019-07-13 12:16 ./usr/share/doc/jellyfish/jellyfish.pdf.gz
-rw-r--r-- root/root 1665 2022-09-28 19:48 ./usr/share/doc/jellyfish/run-unit-test
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/man/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/man/man1/
-rw-r--r-- root/root 4554 2022-09-28 19:48 ./usr/share/man/man1/jellyfish.1.gz
libjellyfish-2.0-2-dbgsym_2.3.0-15+b3_armhf.deb
-----------------------------------------------
new Debian package, version 2.0.
size 532728 bytes: control archive=564 bytes.
441 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libjellyfish-2.0-2-dbgsym
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 562
Depends: libjellyfish-2.0-2 (= 2.3.0-15+b3)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libjellyfish-2.0-2
Build-Ids: ff80a0fceb210a62b48607ad55942da88e59c1a1
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 565004 2022-09-28 19:48 ./usr/lib/debug/.build-id/ff/80a0fceb210a62b48607ad55942da88e59c1a1.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-2-dbgsym -> libjellyfish-2.0-2
libjellyfish-2.0-2_2.3.0-15+b3_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 54468 bytes: control archive=1288 bytes.
1271 bytes, 28 lines control
506 bytes, 6 lines md5sums
49 bytes, 1 lines shlibs
68 bytes, 2 lines triggers
Package: libjellyfish-2.0-2
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 219
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 -> libjellyfish-2.0.so.2.0.0
-rw-r--r-- root/root 198052 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-2/
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1817 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz
-rw-r--r-- root/root 284 2019-07-13 12:16 ./usr/share/doc/libjellyfish-2.0-2/changelog.gz
-rw-r--r-- root/root 6398 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-2/copyright
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/lintian/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 230 2022-09-28 19:48 ./usr/share/lintian/overrides/libjellyfish-2.0-2
libjellyfish-2.0-dev_2.3.0-15+b3_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 126424 bytes: control archive=2572 bytes.
1230 bytes, 27 lines control
4352 bytes, 58 lines md5sums
Package: libjellyfish-2.0-dev
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 600
Depends: libjellyfish-2.0-2 (= 2.3.0-15+b3)
Section: libdevel
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/include/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/include/jellyfish/
-rw-r--r-- root/root 1596 2022-09-28 19:48 ./usr/include/jellyfish/allocators_mmap.hpp
-rw-r--r-- root/root 5898 2022-09-28 19:48 ./usr/include/jellyfish/atomic_bits_array.hpp
-rw-r--r-- root/root 4770 2022-09-28 19:48 ./usr/include/jellyfish/atomic_field.hpp
-rw-r--r-- root/root 1392 2022-09-28 19:48 ./usr/include/jellyfish/atomic_gcc.hpp
-rw-r--r-- root/root 272 2022-09-28 19:48 ./usr/include/jellyfish/backtrace.hpp
-rw-r--r-- root/root 6829 2022-09-28 19:48 ./usr/include/jellyfish/binary_dumper.hpp
-rw-r--r-- root/root 3480 2022-09-28 19:48 ./usr/include/jellyfish/bloom_common.hpp
-rw-r--r-- root/root 6778 2022-09-28 19:48 ./usr/include/jellyfish/bloom_counter2.hpp
-rw-r--r-- root/root 5447 2022-09-28 19:48 ./usr/include/jellyfish/bloom_filter.hpp
-rw-r--r-- root/root 5211 2022-09-28 19:48 ./usr/include/jellyfish/circular_buffer.hpp
-rw-r--r-- root/root 2408 2022-09-28 19:48 ./usr/include/jellyfish/compare_and_swap.hpp
-rw-r--r-- root/root 5862 2022-09-28 19:48 ./usr/include/jellyfish/config.h
-rw-r--r-- root/root 7472 2022-09-28 19:48 ./usr/include/jellyfish/cooperative_pool.hpp
-rw-r--r-- root/root 8494 2022-09-28 19:48 ./usr/include/jellyfish/cooperative_pool2.hpp
-rw-r--r-- root/root 4125 2022-09-28 19:48 ./usr/include/jellyfish/cpp_array.hpp
-rw-r--r-- root/root 2742 2022-09-28 19:48 ./usr/include/jellyfish/divisor.hpp
-rw-r--r-- root/root 2710 2022-09-28 19:48 ./usr/include/jellyfish/dumper.hpp
-rw-r--r-- root/root 2257 2022-09-28 19:48 ./usr/include/jellyfish/err.hpp
-rw-r--r-- root/root 4033 2022-09-28 19:48 ./usr/include/jellyfish/file_header.hpp
-rw-r--r-- root/root 4637 2022-09-28 19:48 ./usr/include/jellyfish/generator_manager.hpp
-rw-r--r-- root/root 6814 2022-09-28 19:48 ./usr/include/jellyfish/generic_file_header.hpp
-rw-r--r-- root/root 8326 2022-09-28 19:48 ./usr/include/jellyfish/hash_counter.hpp
-rw-r--r-- root/root 7025 2022-09-28 19:48 ./usr/include/jellyfish/int128.hpp
-rw-r--r-- root/root 1118 2022-09-28 19:48 ./usr/include/jellyfish/jellyfish.hpp
-rw-r--r-- root/root 61697 2022-09-28 19:48 ./usr/include/jellyfish/json.h
-rw-r--r-- root/root 40578 2022-09-28 19:48 ./usr/include/jellyfish/large_hash_array.hpp
-rw-r--r-- root/root 7564 2022-09-28 19:48 ./usr/include/jellyfish/large_hash_iterator.hpp
-rw-r--r-- root/root 4328 2022-09-28 19:48 ./usr/include/jellyfish/locks_pthread.hpp
-rw-r--r-- root/root 5181 2022-09-28 19:48 ./usr/include/jellyfish/mapped_file.hpp
-rw-r--r-- root/root 23866 2022-09-28 19:48 ./usr/include/jellyfish/mer_dna.hpp
-rw-r--r-- root/root 1296 2022-09-28 19:48 ./usr/include/jellyfish/mer_dna_bloom_counter.hpp
-rw-r--r-- root/root 3076 2022-09-28 19:48 ./usr/include/jellyfish/mer_heap.hpp
-rw-r--r-- root/root 2588 2022-09-28 19:48 ./usr/include/jellyfish/mer_iterator.hpp
-rw-r--r-- root/root 9371 2022-09-28 19:48 ./usr/include/jellyfish/mer_overlap_sequence_parser.hpp
-rw-r--r-- root/root 3247 2022-09-28 19:48 ./usr/include/jellyfish/mer_qual_iterator.hpp
-rw-r--r-- root/root 8066 2022-09-28 19:48 ./usr/include/jellyfish/misc.hpp
-rw-r--r-- root/root 10025 2022-09-28 19:48 ./usr/include/jellyfish/offsets_key_value.hpp
-rw-r--r-- root/root 960 2022-09-28 19:48 ./usr/include/jellyfish/parser_common.hpp
-rw-r--r-- root/root 12884 2022-09-28 19:48 ./usr/include/jellyfish/rectangular_binary_matrix.hpp
-rw-r--r-- root/root 2311 2022-09-28 19:48 ./usr/include/jellyfish/sam_format.hpp
-rw-r--r-- root/root 3504 2022-09-28 19:48 ./usr/include/jellyfish/simple_circular_buffer.hpp
-rw-r--r-- root/root 3407 2022-09-28 19:48 ./usr/include/jellyfish/sorted_dumper.hpp
-rw-r--r-- root/root 5069 2022-09-28 19:48 ./usr/include/jellyfish/stdio_filebuf.hpp
-rw-r--r-- root/root 602 2022-09-28 19:48 ./usr/include/jellyfish/storage.hpp
-rw-r--r-- root/root 2036 2022-09-28 19:48 ./usr/include/jellyfish/stream_iterator.hpp
-rw-r--r-- root/root 6318 2022-09-28 19:48 ./usr/include/jellyfish/stream_manager.hpp
-rw-r--r-- root/root 2063 2022-09-28 19:48 ./usr/include/jellyfish/text_dumper.hpp
-rw-r--r-- root/root 994 2022-09-28 19:48 ./usr/include/jellyfish/thread_exec.hpp
-rw-r--r-- root/root 1884 2022-09-28 19:48 ./usr/include/jellyfish/time.hpp
-rw-r--r-- root/root 1599 2022-09-28 19:48 ./usr/include/jellyfish/token_ring.hpp
-rw-r--r-- root/root 6761 2022-09-28 19:48 ./usr/include/jellyfish/whole_sequence_parser.hpp
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 219294 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
-rw-r--r-- root/root 1008 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so -> libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 276 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/jellyfish-2.0.pc
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-dev/
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1817 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz
-rw-r--r-- root/root 284 2019-07-13 12:16 ./usr/share/doc/libjellyfish-2.0-dev/changelog.gz
-rw-r--r-- root/root 6398 2022-09-28 19:48 ./usr/share/doc/libjellyfish-2.0-dev/copyright
libjellyfish-perl-dbgsym_2.3.0-15+b3_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 352056 bytes: control archive=564 bytes.
438 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libjellyfish-perl-dbgsym
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 377
Depends: libjellyfish-perl (= 2.3.0-15+b3)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libjellyfish-perl
Build-Ids: d0fffc1e8c0260b01481beef81a435b44ec85614
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/d0/
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drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/share/doc/libjellyfish-perl-dbgsym -> libjellyfish-perl
libjellyfish-perl_2.3.0-15+b3_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 55224 bytes: control archive=1164 bytes.
1248 bytes, 27 lines control
497 bytes, 6 lines md5sums
Package: libjellyfish-perl
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 226
Depends: perl (>= 5.36.0-6), perlapi-5.36.0, libc6 (>= 2.34), libgcc-s1 (>= 3.5)
Section: perl
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Perl bindings of jellyfish.
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/
-rw-r--r-- root/root 198596 2022-09-28 19:48 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/libjellyfish-perl/
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/share/doc/libjellyfish-perl/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1819 2022-09-28 19:48 ./usr/share/doc/libjellyfish-perl/changelog.Debian.gz
-rw-r--r-- root/root 284 2019-07-13 12:16 ./usr/share/doc/libjellyfish-perl/changelog.gz
-rw-r--r-- root/root 6398 2022-09-28 19:48 ./usr/share/doc/libjellyfish-perl/copyright
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/perl5/
-rw-r--r-- root/root 7414 2022-09-28 19:48 ./usr/share/perl5/jellyfish.pm
python3-dna-jellyfish-dbgsym_2.3.0-15+b3_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 339816 bytes: control archive=556 bytes.
433 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-dna-jellyfish-dbgsym
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 369
Depends: python3-dna-jellyfish (= 2.3.0-15+b3)
Section: debug
Priority: optional
Description: debug symbols for python3-dna-jellyfish
Build-Ids: 2c279930ef56b2eceb23c095252730935521e962
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 367176 2022-09-28 19:48 ./usr/lib/debug/.build-id/2c/279930ef56b2eceb23c095252730935521e962.debug
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-28 19:48 ./usr/share/doc/python3-dna-jellyfish-dbgsym -> python3-dna-jellyfish
python3-dna-jellyfish_2.3.0-15+b3_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 53124 bytes: control archive=1520 bytes.
1309 bytes, 26 lines control
637 bytes, 7 lines md5sums
289 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: python3-dna-jellyfish
Source: jellyfish (2.3.0-15)
Version: 2.3.0-15+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 168
Depends: python3 (<< 3.12), python3 (>= 3.11~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libjellyfish-2.0-2 (>= 2.3.0), libstdc++6 (>= 5.2)
Section: python
Priority: optional
Homepage: https://github.com/gmarcais/Jellyfish
Description: count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Python bindings of jellyfish.
drwxr-xr-x root/root 0 2022-09-28 19:48 ./
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root 134640 2022-09-28 19:48 ./usr/lib/python3/dist-packages/_dna_jellyfish.cpython-311-arm-linux-gnueabihf.so
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info
-rw-r--r-- root/root 12643 2022-09-28 19:48 ./usr/lib/python3/dist-packages/dna_jellyfish.py
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-28 19:48 ./usr/share/doc/python3-dna-jellyfish/
-rw-r--r-- root/root 224 2022-09-28 19:48 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1816 2022-09-28 19:48 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.gz
-rw-r--r-- root/root 284 2019-07-13 12:16 ./usr/share/doc/python3-dna-jellyfish/changelog.gz
-rw-r--r-- root/root 6398 2022-09-28 19:48 ./usr/share/doc/python3-dna-jellyfish/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 136892
Build-Time: 936
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 418
Job: jellyfish_2.3.0-15
Machine Architecture: armhf
Package: jellyfish
Package-Time: 1380
Source-Version: 2.3.0-15
Space: 136892
Status: successful
Version: 2.3.0-15+b3
--------------------------------------------------------------------------------
Finished at 2023-02-01T17:11:09Z
Build needed 00:23:00, 136892k disk space