jellyfish →
2.2.10-2 →
armhf → 2019-07-13 08:15:34
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| jellyfish 2.2.10-2 (armhf) Sat, 13 Jul 2019 08:04:56 +0000 |
+==============================================================================+
Package: jellyfish
Version: 2.2.10-2
Source Version: 2.2.10-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-799b97a4-0c55-45f4-a600-5126607aacfe' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.4 MB in 11s (2225 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 692 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main jellyfish 2.2.10-2 (dsc) [2431 B]
Get:2 http://172.17.0.1/private bullseye-staging/main jellyfish 2.2.10-2 (tar) [677 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main jellyfish 2.2.10-2 (diff) [12.1 kB]
Fetched 692 kB in 2s (391 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish-upwCU8/jellyfish-2.2.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-upwCU8' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-MMFU3g/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-MMFU3g/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-MMFU3g/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (10.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath
Filtered Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath
dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<<BUILDDIR>>/resolver-MMFU3g/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ Packages [641 B]
Fetched 2533 B in 0s (12.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install jellyfish build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils ca-certificates
chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl
libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libmpdec2 libncurses6 libpipeline1 libprocps7 libpython-all-dev
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libruby2.5 libsigsegv2 libssl1.1
libtinfo5 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support
openssl pkg-config po-debconf procps python python-all python-all-dev
python-dev python-minimal python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7
python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest
ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5
rubygems-integration sensible-utils swig swig3.0 time yaggo
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3.7-venv
python3.7-doc ri ruby-dev bundler swig-doc swig-examples swig3.0-examples
swig3.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl psmisc zip
fonts-lato libjs-jquery
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils ca-certificates
chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl
libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libmpdec2 libncurses6 libpipeline1 libprocps7 libpython-all-dev
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libruby2.5 libsigsegv2 libssl1.1
libtinfo5 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support
openssl pkg-config po-debconf procps python python-all python-all-dev
python-dev python-minimal python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7
python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest
ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5
rubygems-integration sbuild-build-depends-jellyfish-dummy sensible-utils
swig swig3.0 time yaggo
0 upgraded, 102 newly installed, 0 to remove and 18 not upgraded.
Need to get 116 MB of archives.
After this operation, 259 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MMFU3g/apt_archive ./ sbuild-build-depends-jellyfish-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.9.1-2 [104 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20181013-2 [309 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.16-2 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.16-2 [1093 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.62 [37.2 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.6-2 [77.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.16-2 [1844 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.16-2 [305 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.3-2 [583 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.3-2 [1464 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.3-2 [1664 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.3-2 [330 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20181013-2 [78.6 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf bc armhf 1.07.1-2 [101 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.35-4 [242 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.35-4 [110 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.35-4 [65.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf time armhf 1.7-25.1 [30.8 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1c-1 [804 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.84 [17.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.58.3-2 [1077 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.3-1 [142 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 3.20190308 [99.3 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.6-2 [127 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.16-2 [873 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.16-2 [30.9 MB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.3-2 [1252 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.3-2 [47.2 MB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf rubygems-integration all 1.11 [4994 B]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf ruby2.5 armhf 2.5.5-3 [400 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf ruby armhf 1:2.5.1+b1 [11.6 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf rake all 12.3.1-3 [66.9 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf ruby-did-you-mean all 1.2.1-1 [14.4 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf ruby-minitest all 5.11.3-1 [54.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf ruby-power-assert all 1.1.1-1 [10.9 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf ruby-test-unit all 3.2.8-1 [72.4 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libruby2.5 armhf 2.5.5-3 [3147 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python-all armhf 2.7.16-1 [1044 B]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.16-2 [291 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.3-2 [522 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.3-1 [1064 B]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf swig3.0 armhf 3.0.12-2 [1221 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf swig armhf 3.0.12-2 [310 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf yaggo all 1.5.10-2 [18.9 kB]
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.3-2) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libpython3-dev:armhf (3.7.3-1) ...
Setting up python2-dev (2.7.16-1) ...
Setting up python3 (3.7.3-1) ...
Setting up rubygems-integration (1.11) ...
Setting up python-all (2.7.16-1) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.3-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython-dev:armhf (2.7.16-1) ...
Setting up libpython3-all-dev:armhf (3.7.3-1) ...
Setting up python3-lib2to3 (3.7.3-1) ...
Setting up python-dev (2.7.16-1) ...
Setting up python3-distutils (3.7.3-1) ...
Setting up dh-python (3.20190308) ...
Setting up libpython-all-dev:armhf (2.7.16-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.3-1) ...
Setting up python3-dev (3.7.3-1) ...
Setting up python-all-dev (2.7.16-1) ...
Setting up python3-all-dev (3.7.3-1) ...
Setting up dh-autoreconf (19) ...
Setting up rake (12.3.1-3) ...
Setting up libruby2.5:armhf (2.5.5-3) ...
Setting up debhelper (12.1.1) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up ruby2.5 (2.5.5-3) ...
Setting up ruby (1:2.5.1+b1) ...
Setting up yaggo (1.5.10-2) ...
Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 bc_1.07.1-2 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 ca-certificates_20190110 chrpath_0.16-2 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_3.20190308 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.6-2 libexpat1-dev_2.2.6-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.16-2 libpython2.7-dev_2.7.16-2 libpython2.7-minimal_2.7.16-2 libpython2.7-stdlib_2.7.16-2 libpython3-all-dev_3.7.3-1 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.3-2 libpython3.7-dev_3.7.3-2 libpython3.7-minimal_3.7.3-2 libpython3.7-stdlib_3.7.3-2 libreadline7_7.0-5 libruby2.5_2.5.5-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsystemd0_241-5+rpi1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20181013-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17 mime-support_3.62 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 openssl_1.1.1c-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.16-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-dev_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-2 python2.7-dev_2.7.16-2 python2.7-minimal_2.7.16-2 python3_3.7.3-1 python3-all_3.7.3-1 python3-all-dev_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.3-1 python3-lib2to3_3.7.3-1 python3-minimal_3.7.3-1 python3.7_3.7.3-2 python3.7-dev_3.7.3-2 python3.7-minimal_3.7.3-2 rake_12.3.1-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 ruby_1:2.5.1+b1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.5-3 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-2 swig3.0_3.0.12-2 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 time_1.7-25.1 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 yaggo_1.5.10-2 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 24 14:47:04 2018 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./jellyfish_2.2.10-2.dsc
dpkg-source: info: extracting jellyfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish_2.2.10.orig.tar.gz
dpkg-source: info: unpacking jellyfish_2.2.10-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying manpage_whatis_entry.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying fix_catch.patch
dpkg-source: info: applying fix_replacement_of_-L_option.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-799b97a4-0c55-45f4-a600-5126607aacfe
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package jellyfish
dpkg-buildpackage: info: source version 2.2.10-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean # --with python3
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
mv debian/tmp_save_tests/* tests ; \
rmdir debian/tmp_save_tests ; \
fi
rm -f tests/compat.sh
rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch # --with python3
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-swig --enable-perl-binding # --enable-python-binding
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for HTSLIB... no
checking for samtools... no
checking for md5sum... md5sum
checking for yaggo... /usr/bin/yaggo
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for __int128... no
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for sys/syscall.h... yes
checking for siginfo_t.si_int... yes
checking for swig... /usr/bin/swig
checking SWIG version... 3.0.12
checking for SWIG library... /usr/share/swig3.0
checking for perl... /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl extension include path... /usr/lib/arm-linux-gnueabihf/perl/5.28/CORE
checking for Perl extension target directory... /usr/lib/perl/5.28.0
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for posix_memalign... yes
checking for aligned_alloc... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo
/usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/count_main.o sub_commands/count_main.cc
In file included from ./include/jellyfish/large_hash_array.hpp:27,
from ./include/jellyfish/hash_counter.hpp:22,
from sub_commands/count_main.cc:38:
./include/jellyfish/rectangular_binary_matrix.hpp: In member function 'bool jellyfish::RectangularBinaryMatrix::is_zero() const':
./include/jellyfish/rectangular_binary_matrix.hpp:127:29: error: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Werror=sign-compare]
return (p - _columns) == _c;
~~~~~~~~~~~~~~~^~~~~
cc1plus: all warnings being treated as errors
make[3]: *** [Makefile:1749: sub_commands/count_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:1029: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam returned exit code 2
make[1]: *** [debian/rules:68: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:19: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-07-13T08:15:32Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 8748
Build-Time: 58
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 555
Job: jellyfish_2.2.10-2
Machine Architecture: armhf
Package: jellyfish
Package-Time: 636
Source-Version: 2.2.10-2
Space: 8748
Status: attempted
Version: 2.2.10-2
--------------------------------------------------------------------------------
Finished at 2019-07-13T08:15:32Z
Build needed 00:10:36, 8748k disk space