idba →
1.1.2-2 →
armhf → 2016-07-07 13:12:46
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| idba 1.1.2-2 (armhf) 07 Jul 2016 12:55 |
+==============================================================================+
Package: idba
Version: 1.1.2-2
Source Version: 1.1.2-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/idba-DHN34N/idba-1.1.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/idba-DHN34N' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-cd7a2e7b-7199-4dcb-bac6-64bd332b4a3f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9123 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.2 MB in 23s (878 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'idba' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/idba.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/idba.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 435 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main idba 1.1.2-2 (dsc) [1884 B]
Get:2 http://172.17.0.1/private stretch-staging/main idba 1.1.2-2 (tar) [428 kB]
Get:3 http://172.17.0.1/private stretch-staging/main idba 1.1.2-2 (diff) [5532 B]
Fetched 435 kB in 0s (454 kB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-nBZAVi/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Packages [526 B]
Ign:4 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Sources [276 B]
Get:5 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ Packages [759 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-nBZAVi/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-nBZAVi/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-autoreconf
Filtered Build-Depends: debhelper (>= 9), dh-autoreconf
dpkg-deb: building package 'sbuild-build-depends-idba-dummy' in '/<<BUILDDIR>>/resolver-WgiZXV/apt_archive/sbuild-build-depends-idba-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Sources [218 B]
Get:5 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Packages [533 B]
Ign:4 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Sources [268 B]
Get:5 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ Packages [765 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-WgiZXV/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install idba build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db po-debconf sbuild-build-depends-idba-dummy
0 upgraded, 31 newly installed, 0 to remove and 46 not upgraded.
Need to get 7907 kB/18.7 MB of archives.
After this operation, 64.0 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-WgiZXV/apt_archive ./ sbuild-build-depends-idba-dummy 0.invalid.0 [776 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking sbuild-build-depends-idba-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-9) ...
Setting up groff-base (1.22.3-7) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up file (1:5.28-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Setting up debhelper (9.20160403) ...
Setting up dh-autoreconf (12) ...
Setting up sbuild-build-depends-idba-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-9) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.6.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-10 dpkg-dev_1.18.7 g++-5_5.3.1-21 gcc-5_5.3.1-21 libc6-dev_2.22-9 libstdc++-5-dev_5.3.1-21 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.12 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-10 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.3.1-21 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43-3 e2fsprogs_1.43-3 fakeroot_1.20.2-2 file_1:5.28-2 findutils_4.6.0+git+20160126-2 fuse2fs_1.43-3 g++_4:5.3.1-3 g++-5_5.3.1-21 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.3.1-21 gcc-5-base_5.3.1-21 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-3 groff-base_1.22.3-7 gzip_1.6-5 hostname_3.17 init_1.34 init-system-helpers_1.34 initscripts_2.88dsf-59.4 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10-4 libapt-pkg5.0_1.2.12 libarchive-zip-perl_1.57-1 libasan2_5.3.1-21 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-9 libc-dev-bin_2.22-9 libc6_2.22-9 libc6-dev_2.22-9 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43-3 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.124-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libfakeroot_1.20.2-2 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.6-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.3.1-21 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.22-2 libicu55_55.1-7 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libss2_1.43-3 libstdc++-5-dev_5.3.1-21 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-2 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.22-9 nano_2.5.3-3 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-idba-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-2 systemd-sysv_230-2 sysv-rc_2.88dsf-59.4 sysvinit-utils_2.88dsf-59.4 tar_1.29-1+rpi1 tzdata_2016d-2 udev_230-2 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Jul 1 19:59:35 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./idba_1.1.2-2.dsc
dpkg-source: info: extracting idba in idba-1.1.2
dpkg-source: info: unpacking idba_1.1.2.orig.tar.gz
dpkg-source: info: unpacking idba_1.1.2-2.debian.tar.xz
dpkg-source: info: applying use-atomic-for-mips.patch
dpkg-source: info: applying gcc-6.patch
dpkg-source: info: applying run_tests.patch
dpkg-source: info: applying spelling.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-cd7a2e7b-7199-4dcb-bac6-64bd332b4a3f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package idba
dpkg-buildpackage: info: source version 1.1.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build idba-1.1.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --with autoreconf --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
configure.ac:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:8: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:12: installing './compile'
bin/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
bin/Makefile.am:9: warning: source file '$(top_srcdir)/src/tools/fa2fq.cpp' is in a subdirectory,
bin/Makefile.am:9: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
bin/Makefile.am:19: warning: source file '$(top_srcdir)/src/tools/filter_blat.cpp' is in a subdirectory,
bin/Makefile.am:19: but option 'subdir-objects' is disabled
bin/Makefile.am:17: warning: source file '$(top_srcdir)/src/tools/filter_contigs.cpp' is in a subdirectory,
bin/Makefile.am:17: but option 'subdir-objects' is disabled
bin/Makefile.am:33: warning: source file '$(top_srcdir)/src/release/filterfa.cpp' is in a subdirectory,
bin/Makefile.am:33: but option 'subdir-objects' is disabled
bin/Makefile.am:25: warning: source file '$(top_srcdir)/src/release/fq2fa.cpp' is in a subdirectory,
bin/Makefile.am:25: but option 'subdir-objects' is disabled
bin/Makefile.am:34: warning: source file '$(top_srcdir)/src/release/idba.cpp' is in a subdirectory,
bin/Makefile.am:34: but option 'subdir-objects' is disabled
bin/Makefile.am:30: warning: source file '$(top_srcdir)/src/release/idba_hybrid.cpp' is in a subdirectory,
bin/Makefile.am:30: but option 'subdir-objects' is disabled
bin/Makefile.am:29: warning: source file '$(top_srcdir)/src/release/idba_tran.cpp' is in a subdirectory,
bin/Makefile.am:29: but option 'subdir-objects' is disabled
bin/Makefile.am:13: warning: source file '$(top_srcdir)/src/tools/idba_tran_test.cpp' is in a subdirectory,
bin/Makefile.am:13: but option 'subdir-objects' is disabled
bin/Makefile.am:27: warning: source file '$(top_srcdir)/src/release/idba_ud.cpp' is in a subdirectory,
bin/Makefile.am:27: but option 'subdir-objects' is disabled
bin/Makefile.am:31: warning: source file '$(top_srcdir)/src/release/parallel_blat.cpp' is in a subdirectory,
bin/Makefile.am:31: but option 'subdir-objects' is disabled
bin/Makefile.am:18: warning: source file '$(top_srcdir)/src/tools/parallel_rna_blat.cpp' is in a subdirectory,
bin/Makefile.am:18: but option 'subdir-objects' is disabled
bin/Makefile.am:12: warning: source file '$(top_srcdir)/src/tools/print_graph.cpp' is in a subdirectory,
bin/Makefile.am:12: but option 'subdir-objects' is disabled
bin/Makefile.am:28: warning: source file '$(top_srcdir)/src/release/raw_n50.cpp' is in a subdirectory,
bin/Makefile.am:28: but option 'subdir-objects' is disabled
bin/Makefile.am:14: warning: source file '$(top_srcdir)/src/tools/sample_reads.cpp' is in a subdirectory,
bin/Makefile.am:14: but option 'subdir-objects' is disabled
bin/Makefile.am:7: warning: source file '$(top_srcdir)/src/tools/scaffold.cpp' is in a subdirectory,
bin/Makefile.am:7: but option 'subdir-objects' is disabled
bin/Makefile.am:6: warning: source file '$(top_srcdir)/src/tools/shuffle_reads.cpp' is in a subdirectory,
bin/Makefile.am:6: but option 'subdir-objects' is disabled
bin/Makefile.am:36: warning: source file '$(top_srcdir)/src/release/sim_reads.cpp' is in a subdirectory,
bin/Makefile.am:36: but option 'subdir-objects' is disabled
bin/Makefile.am:32: warning: source file '$(top_srcdir)/src/release/sim_reads_tran.cpp' is in a subdirectory,
bin/Makefile.am:32: but option 'subdir-objects' is disabled
bin/Makefile.am:15: warning: source file '$(top_srcdir)/src/tools/sort_psl.cpp' is in a subdirectory,
bin/Makefile.am:15: but option 'subdir-objects' is disabled
bin/Makefile.am:16: warning: source file '$(top_srcdir)/src/tools/sort_reads.cpp' is in a subdirectory,
bin/Makefile.am:16: but option 'subdir-objects' is disabled
bin/Makefile.am:20: warning: source file '$(top_srcdir)/src/tools/split_fa.cpp' is in a subdirectory,
bin/Makefile.am:20: but option 'subdir-objects' is disabled
bin/Makefile.am:23: warning: source file '$(top_srcdir)/src/tools/split_fq.cpp' is in a subdirectory,
bin/Makefile.am:23: but option 'subdir-objects' is disabled
bin/Makefile.am:35: warning: source file '$(top_srcdir)/src/release/split_scaffold.cpp' is in a subdirectory,
bin/Makefile.am:35: but option 'subdir-objects' is disabled
bin/Makefile.am:21: warning: source file '$(top_srcdir)/src/tools/test.cpp' is in a subdirectory,
bin/Makefile.am:21: but option 'subdir-objects' is disabled
bin/Makefile.am:8: warning: source file '$(top_srcdir)/src/tools/validate_component.cpp' is in a subdirectory,
bin/Makefile.am:8: but option 'subdir-objects' is disabled
bin/Makefile.am:26: warning: source file '$(top_srcdir)/src/release/validate_contigs_blat.cpp' is in a subdirectory,
bin/Makefile.am:26: but option 'subdir-objects' is disabled
bin/Makefile.am:11: warning: source file '$(top_srcdir)/src/tools/validate_contigs_mummer.cpp' is in a subdirectory,
bin/Makefile.am:11: but option 'subdir-objects' is disabled
bin/Makefile.am:22: warning: source file '$(top_srcdir)/src/tools/validate_reads_blat.cpp' is in a subdirectory,
bin/Makefile.am:22: but option 'subdir-objects' is disabled
bin/Makefile.am:10: warning: source file '$(top_srcdir)/src/tools/validate_rna.cpp' is in a subdirectory,
bin/Makefile.am:10: but option 'subdir-objects' is disabled
lib/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/basic/math.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/hash_aligner.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/options_description.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/log.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/utils.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/blat_record.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/short_sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_reader.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_writer.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_io.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/compact_sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/hash_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/scaffold_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_info.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/assembly/local_assembler.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/assembly/assembly_utility.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:68: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
lib/Makefile.am:68: but option 'subdir-objects' is disabled
lib/Makefile.am:68: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' is in a subdirectory,
lib/Makefile.am:68: but option 'subdir-objects' is disabled
test/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
test/Makefile.am:11: warning: source file '$(top_srcdir)/src/test/atomic_integer_unittest.cpp' is in a subdirectory,
test/Makefile.am:11: but option 'subdir-objects' is disabled
test/Makefile.am:8: warning: source file '$(top_srcdir)/src/test/bit_edges_unittest.cpp' is in a subdirectory,
test/Makefile.am:8: but option 'subdir-objects' is disabled
test/Makefile.am:6: warning: source file '$(top_srcdir)/src/test/compact_sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:6: but option 'subdir-objects' is disabled
test/Makefile.am:17: warning: source file '$(top_srcdir)/src/test/hash_map_unittest.cpp' is in a subdirectory,
test/Makefile.am:17: but option 'subdir-objects' is disabled
test/Makefile.am:10: warning: source file '$(top_srcdir)/src/test/hash_set_unittest.cpp' is in a subdirectory,
test/Makefile.am:10: but option 'subdir-objects' is disabled
test/Makefile.am:7: warning: source file '$(top_srcdir)/src/test/hash_table_unittest.cpp' is in a subdirectory,
test/Makefile.am:7: but option 'subdir-objects' is disabled
test/Makefile.am:13: warning: source file '$(top_srcdir)/src/test/histgram_unittest.cpp' is in a subdirectory,
test/Makefile.am:13: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/test/kmer_unittest.cpp' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:14: warning: source file '$(top_srcdir)/src/test/managed_list_unittest.cpp' is in a subdirectory,
test/Makefile.am:14: but option 'subdir-objects' is disabled
test/Makefile.am:15: warning: source file '$(top_srcdir)/src/test/sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:15: but option 'subdir-objects' is disabled
test/Makefile.am:16: warning: source file '$(top_srcdir)/src/test/short_sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:16: but option 'subdir-objects' is disabled
test/Makefile.am:12: warning: source file '$(top_srcdir)/src/test/vertex_status_unittest.cpp' is in a subdirectory,
test/Makefile.am:12: but option 'subdir-objects' is disabled
parallel-tests: installing './test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" LIBS=" -latomic"
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking "LDFLAGS=-fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" "LIBS= -latomic"
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for working memcmp... yes
checking for vprintf... yes
checking for _doprnt... no
checking for sqrt... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bin/Makefile
config.status: creating lib/Makefile
config.status: creating test/Makefile
config.status: creating script/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in lib
make[3]: Entering directory '/<<PKGBUILDDIR>>/lib'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o math.o `test -f '../src/basic/math.cpp' || echo './'`../src/basic/math.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_aligner.o `test -f '../src/misc/hash_aligner.cpp' || echo './'`../src/misc/hash_aligner.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o options_description.o `test -f '../src/misc/options_description.cpp' || echo './'`../src/misc/options_description.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o log.o `test -f '../src/misc/log.cpp' || echo './'`../src/misc/log.cpp
../src/misc/log.cpp: In static member function 'static void* LogThread::LogThreadFunc(void*)':
../src/misc/log.cpp:121:44: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
write(log_thread.out_fd, line, len);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o `test -f '../src/misc/utils.cpp' || echo './'`../src/misc/utils.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o blat_record.o `test -f '../src/misc/blat_record.cpp' || echo './'`../src/misc/blat_record.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o short_sequence.o `test -f '../src/sequence/short_sequence.cpp' || echo './'`../src/sequence/short_sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_reader.o `test -f '../src/sequence/sequence_reader.cpp' || echo './'`../src/sequence/sequence_reader.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_writer.o `test -f '../src/sequence/sequence_writer.cpp' || echo './'`../src/sequence/sequence_writer.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_io.o `test -f '../src/sequence/sequence_io.cpp' || echo './'`../src/sequence/sequence_io.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.o `test -f '../src/sequence/sequence.cpp' || echo './'`../src/sequence/sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o compact_sequence.o `test -f '../src/sequence/compact_sequence.cpp' || echo './'`../src/sequence/compact_sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_graph_branch_group.o `test -f '../src/graph/contig_graph_branch_group.cpp' || echo './'`../src/graph/contig_graph_branch_group.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_graph.o `test -f '../src/graph/hash_graph.cpp' || echo './'`../src/graph/hash_graph.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scaffold_graph.o `test -f '../src/graph/scaffold_graph.cpp' || echo './'`../src/graph/scaffold_graph.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_graph.o `test -f '../src/graph/contig_graph.cpp' || echo './'`../src/graph/contig_graph.cpp
../src/graph/contig_graph.cpp: In member function 'void ContigGraph::TopSort(std::deque<ContigGraphVertexAdaptor>&, std::deque<ContigGraphVertexAdaptor>&)':
../src/graph/contig_graph.cpp:1385:30: warning: variable 'end' set but not used [-Wunused-but-set-variable]
ContigGraphVertexAdaptor end = GetEndVertexAdaptor(component);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_graph_branch_group.o `test -f '../src/graph/hash_graph_branch_group.cpp' || echo './'`../src/graph/hash_graph_branch_group.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_info.o `test -f '../src/graph/contig_info.cpp' || echo './'`../src/graph/contig_info.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o local_assembler.o `test -f '../src/assembly/local_assembler.cpp' || echo './'`../src/assembly/local_assembler.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o assembly_utility.o `test -f '../src/assembly/assembly_utility.cpp' || echo './'`../src/assembly/assembly_utility.cpp
../src/assembly/local_assembler.cpp: In static member function 'static void* LocalAssemblerWithReference::LocalAssembleThread(void*)':
../src/assembly/local_assembler.cpp:488:22: warning: variable 'flag' set but not used [-Wunused-but-set-variable]
bool flag = false;
^
../src/assembly/local_assembler.cpp:489:21: warning: variable 'aligned' set but not used [-Wunused-but-set-variable]
int aligned[2] = {0};
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o gtest_main.o `test -f '../gtest_src/gtest/gtest_main.cc' || echo './'`../gtest_src/gtest/gtest_main.cc
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o gtest-all.o `test -f '../gtest_src/gtest/gtest-all.cc' || echo './'`../gtest_src/gtest/gtest-all.cc
rm -f libgtest.a
ar cru libgtest.a gtest_main.o gtest-all.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest.a
rm -f libassembly.a
ar cru libassembly.a math.o hash_aligner.o options_description.o log.o utils.o blat_record.o short_sequence.o sequence_reader.o sequence_writer.o sequence_io.o sequence.o compact_sequence.o contig_graph_branch_group.o hash_graph.o scaffold_graph.o contig_graph.o hash_graph_branch_group.o contig_info.o local_assembler.o assembly_utility.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libassembly.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib'
Making all in bin
make[3]: Entering directory '/<<PKGBUILDDIR>>/bin'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_hybrid.o `test -f '../src/release/idba_hybrid.cpp' || echo './'`../src/release/idba_hybrid.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle_reads.o `test -f '../src/tools/shuffle_reads.cpp' || echo './'`../src/tools/shuffle_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scaffold.o `test -f '../src/tools/scaffold.cpp' || echo './'`../src/tools/scaffold.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_component.o `test -f '../src/tools/validate_component.cpp' || echo './'`../src/tools/validate_component.cpp
../src/tools/validate_component.cpp: In function 'int main(int, char**)':
../src/tools/validate_component.cpp:141:13: warning: unused variable 'ref_id' [-Wunused-variable]
int ref_id = dict[record.ref_name];
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2fq.o `test -f '../src/tools/fa2fq.cpp' || echo './'`../src/tools/fa2fq.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_rna.o `test -f '../src/tools/validate_rna.cpp' || echo './'`../src/tools/validate_rna.cpp
../src/tools/validate_rna.cpp: In function 'int main(int, char**)':
../src/tools/validate_rna.cpp:396:55: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(flist, "%s %lf", buf, &coverage[i]);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_contigs_mummer.o `test -f '../src/tools/validate_contigs_mummer.cpp' || echo './'`../src/tools/validate_contigs_mummer.cpp
../src/tools/validate_contigs_mummer.cpp: In function 'int main(int, char**)':
../src/tools/validate_contigs_mummer.cpp:218:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MaxLine, fcoord);
^
../src/tools/validate_contigs_mummer.cpp:219:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MaxLine, fcoord);
^
../src/tools/validate_contigs_mummer.cpp:220:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MaxLine, fcoord);
^
../src/tools/validate_contigs_mummer.cpp:221:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MaxLine, fcoord);
^
../src/tools/validate_contigs_mummer.cpp:222:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MaxLine, fcoord);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o print_graph.o `test -f '../src/tools/print_graph.cpp' || echo './'`../src/tools/print_graph.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_tran_test.o `test -f '../src/tools/idba_tran_test.cpp' || echo './'`../src/tools/idba_tran_test.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sample_reads.o `test -f '../src/tools/sample_reads.cpp' || echo './'`../src/tools/sample_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_psl.o `test -f '../src/tools/sort_psl.cpp' || echo './'`../src/tools/sort_psl.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_reads.o `test -f '../src/tools/sort_reads.cpp' || echo './'`../src/tools/sort_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o filter_contigs.o `test -f '../src/tools/filter_contigs.cpp' || echo './'`../src/tools/filter_contigs.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parallel_rna_blat.o `test -f '../src/tools/parallel_rna_blat.cpp' || echo './'`../src/tools/parallel_rna_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o filter_blat.o `test -f '../src/tools/filter_blat.cpp' || echo './'`../src/tools/filter_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o split_fa.o `test -f '../src/tools/split_fa.cpp' || echo './'`../src/tools/split_fa.cpp
../src/tools/parallel_rna_blat.cpp: In function 'void CreateFile(const string&)':
../src/tools/parallel_rna_blat.cpp:47:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/tools/parallel_rna_blat.cpp: In function 'void RemoveFile(const string&)':
../src/tools/parallel_rna_blat.cpp:53:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/tools/parallel_rna_blat.cpp: In function 'void Append(const string&, const string&)':
../src/tools/parallel_rna_blat.cpp:59:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/tools/parallel_rna_blat.cpp: In function 'void RunBlat(const string&)':
../src/tools/parallel_rna_blat.cpp:96:32: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o test.o `test -f '../src/tools/test.cpp' || echo './'`../src/tools/test.cpp
../src/tools/test.cpp:6:32: warning: extra tokens at end of #include directive
#include "graph/contig_graph.h";
^
../src/tools/test.cpp:7:31: warning: extra tokens at end of #include directive
#include "sequence/sequence.h";
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_reads_blat.o `test -f '../src/tools/validate_reads_blat.cpp' || echo './'`../src/tools/validate_reads_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o split_fq.o `test -f '../src/tools/split_fq.cpp' || echo './'`../src/tools/split_fq.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o fq2fa.o `test -f '../src/release/fq2fa.cpp' || echo './'`../src/release/fq2fa.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_contigs_blat.o `test -f '../src/release/validate_contigs_blat.cpp' || echo './'`../src/release/validate_contigs_blat.cpp
../src/release/validate_contigs_blat.cpp: In function 'int main(int, char**)':
../src/release/validate_contigs_blat.cpp:388:55: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(flist, "%s %lf", buf, &coverage[i]);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_ud.o `test -f '../src/release/idba_ud.cpp' || echo './'`../src/release/idba_ud.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o raw_n50.o `test -f '../src/release/raw_n50.cpp' || echo './'`../src/release/raw_n50.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_tran.o `test -f '../src/release/idba_tran.cpp' || echo './'`../src/release/idba_tran.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parallel_blat.o `test -f '../src/release/parallel_blat.cpp' || echo './'`../src/release/parallel_blat.cpp
../src/release/parallel_blat.cpp: In function 'void CreateFile(const string&)':
../src/release/parallel_blat.cpp:47:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/release/parallel_blat.cpp: In function 'void RemoveFile(const string&)':
../src/release/parallel_blat.cpp:53:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/release/parallel_blat.cpp: In function 'void Append(const string&, const string&)':
../src/release/parallel_blat.cpp:59:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
../src/release/parallel_blat.cpp: In function 'void RunBlat(const string&)':
../src/release/parallel_blat.cpp:96:32: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd.c_str());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sim_reads_tran.o `test -f '../src/release/sim_reads_tran.cpp' || echo './'`../src/release/sim_reads_tran.cpp
../src/release/sim_reads_tran.cpp: In function 'int main(int, char**)':
../src/release/sim_reads_tran.cpp:89:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(flist, "%s %lf", buf, &weight[i]);
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o filterfa.o `test -f '../src/release/filterfa.cpp' || echo './'`../src/release/filterfa.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o idba.o `test -f '../src/release/idba.cpp' || echo './'`../src/release/idba.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o split_scaffold.o `test -f '../src/release/split_scaffold.cpp' || echo './'`../src/release/split_scaffold.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sim_reads.o `test -f '../src/release/sim_reads.cpp' || echo './'`../src/release/sim_reads.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_hybrid idba_hybrid.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o shuffle_reads shuffle_reads.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o scaffold scaffold.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_component validate_component.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o fa2fq fa2fq.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_rna validate_rna.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_contigs_mummer validate_contigs_mummer.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o print_graph print_graph.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_tran_test idba_tran_test.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sample_reads sample_reads.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sort_psl sort_psl.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sort_reads sort_reads.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filter_contigs filter_contigs.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o parallel_rna_blat parallel_rna_blat.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filter_blat filter_blat.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_fa split_fa.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o test test.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_reads_blat validate_reads_blat.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_fq split_fq.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o fq2fa fq2fa.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_contigs_blat validate_contigs_blat.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o raw_n50 raw_n50.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o parallel_blat parallel_blat.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sim_reads_tran sim_reads_tran.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filterfa filterfa.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_scaffold split_scaffold.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sim_reads sim_reads.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_ud idba_ud.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_tran idba_tran.o ../lib/libassembly.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba idba.o ../lib/libassembly.a -latomic
make[3]: Leaving directory '/<<PKGBUILDDIR>>/bin'
Making all in test
make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
Making all in script
make[3]: Entering directory '/<<PKGBUILDDIR>>/script'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/script'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--parallel
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in lib
make[2]: Entering directory '/<<PKGBUILDDIR>>/lib'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
Making check in bin
make[2]: Entering directory '/<<PKGBUILDDIR>>/bin'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/bin'
Making check in test
make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
make compact_sequence_unittest hash_table_unittest bit_edges_unittest kmer_unittest hash_set_unittest atomic_integer_unittest vertex_status_unittest histgram_unittest managed_list_unittest sequence_unittest short_sequence_unittest hash_map_unittest
make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o compact_sequence_unittest.o `test -f '../src/test/compact_sequence_unittest.cpp' || echo './'`../src/test/compact_sequence_unittest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_table_unittest.o `test -f '../src/test/hash_table_unittest.cpp' || echo './'`../src/test/hash_table_unittest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o bit_edges_unittest.o `test -f '../src/test/bit_edges_unittest.cpp' || echo './'`../src/test/bit_edges_unittest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o kmer_unittest.o `test -f '../src/test/kmer_unittest.cpp' || echo './'`../src/test/kmer_unittest.cpp
In file included from ../src/test/bit_edges_unittest.cpp:9:0:
../src/test/bit_edges_unittest.cpp: In member function 'virtual void BitEdgesTest_Add_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/bit_edges_unittest.cpp:70:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, edges[0]);
^
../src/test/bit_edges_unittest.cpp: In member function 'virtual void BitEdgesTest_Remove_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/bit_edges_unittest.cpp:78:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, edges[1]);
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/bit_edges_unittest.cpp:82:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, edges[1]);
^
In file included from ../src/test/compact_sequence_unittest.cpp:9:0:
../src/test/compact_sequence_unittest.cpp: In member function 'virtual void CompactSequenceTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/compact_sequence_unittest.cpp:283:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_compact_sequence.empty());
^
In file included from ../src/test/hash_table_unittest.cpp:9:0:
../src/test/hash_table_unittest.cpp: In member function 'virtual void HashTableTest_InsertUnique_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_table_unittest.cpp:129:9: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, result.second);
^
../src/test/hash_table_unittest.cpp: In member function 'virtual void HashTableTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_table_unittest.cpp:190:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_hash_table.empty());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_set_unittest.o `test -f '../src/test/hash_set_unittest.cpp' || echo './'`../src/test/hash_set_unittest.cpp
In file included from ../src/test/hash_set_unittest.cpp:10:0:
../src/test/hash_set_unittest.cpp: In member function 'virtual void HashSetTest_Insert_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_set_unittest.cpp:89:9: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, result.second);
^
../src/test/hash_set_unittest.cpp: In member function 'virtual void HashSetTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_set_unittest.cpp:132:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_hash_set.empty());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o atomic_integer_unittest.o `test -f '../src/test/atomic_integer_unittest.cpp' || echo './'`../src/test/atomic_integer_unittest.cpp
In file included from ../src/test/atomic_integer_unittest.cpp:9:0:
../src/test/atomic_integer_unittest.cpp: In member function 'virtual void AtomicIntegerTest_CompareAndSet_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/atomic_integer_unittest.cpp:155:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, a.CompareAndSet(old_a, new_a));
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vertex_status_unittest.o `test -f '../src/test/vertex_status_unittest.cpp' || echo './'`../src/test/vertex_status_unittest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o histgram_unittest.o `test -f '../src/test/histgram_unittest.cpp' || echo './'`../src/test/histgram_unittest.cpp
In file included from ../src/test/vertex_status_unittest.cpp:9:0:
../src/test/vertex_status_unittest.cpp: In member function 'virtual void VertexStatusTest_DefaultConstructor_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:36:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsUsed());
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:37:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsDead());
^
../src/test/vertex_status_unittest.cpp: In member function 'virtual void VertexStatusTest_UsedFlag_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:61:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsUsed());
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:67:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsUsed());
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:69:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsUsed());
^
../src/test/vertex_status_unittest.cpp: In member function 'virtual void VertexStatusTest_DeadFlag_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:75:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsDead());
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:81:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsDead());
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:83:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s.IsDead());
^
../src/test/vertex_status_unittest.cpp: In member function 'virtual void VertexStatusTest_LockPreempt_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:92:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s1.LockPreempt(0));
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:93:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s1.LockPreempt(1));
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:96:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s2.LockPreempt(0));
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:97:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s2.LockPreempt(1));
^
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/vertex_status_unittest.cpp:98:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, s2.LockPreempt(2));
^
In file included from ../src/test/histgram_unittest.cpp:9:0:
../src/test/histgram_unittest.cpp: In member function 'virtual void HistgramTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/histgram_unittest.cpp:159:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, histgram_x.empty());
^
../gtest_src/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = int; T2 = unsigned int]':
../gtest_src/gtest/gtest.h:18417:23: required from 'static testing::AssertionResult testing::internal::EqHelper<true>::Compare(const char*, const char*, const T1&, const T2&, typename testing::internal::EnableIf<(! testing::internal::is_pointer<T2>::value)>::type*) [with T1 = int; T2 = unsigned int; typename testing::internal::EnableIf<(! testing::internal::is_pointer<T2>::value)>::type = void]'
../src/test/histgram_unittest.cpp:70:5: required from here
../gtest_src/gtest/gtest.h:18341:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (expected == actual) {
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o managed_list_unittest.o `test -f '../src/test/managed_list_unittest.cpp' || echo './'`../src/test/managed_list_unittest.cpp
In file included from ../src/test/managed_list_unittest.cpp:9:0:
../src/test/managed_list_unittest.cpp: In member function 'virtual void ManagedListTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/managed_list_unittest.cpp:140:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, list.empty());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_unittest.o `test -f '../src/test/sequence_unittest.cpp' || echo './'`../src/test/sequence_unittest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o short_sequence_unittest.o `test -f '../src/test/short_sequence_unittest.cpp' || echo './'`../src/test/short_sequence_unittest.cpp
In file included from ../src/test/sequence_unittest.cpp:9:0:
../src/test/sequence_unittest.cpp: In member function 'virtual void SequenceTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/sequence_unittest.cpp:321:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_sequence.empty());
^
In file included from ../src/test/short_sequence_unittest.cpp:9:0:
../src/test/short_sequence_unittest.cpp: In member function 'virtual void ShortSequenceTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/short_sequence_unittest.cpp:195:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_short_sequence.empty());
^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_map_unittest.o `test -f '../src/test/hash_map_unittest.cpp' || echo './'`../src/test/hash_map_unittest.cpp
In file included from ../src/test/hash_map_unittest.cpp:9:0:
../src/test/hash_map_unittest.cpp: In member function 'virtual void HashMapTest_Insert_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_map_unittest.cpp:90:9: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, result.second);
^
../src/test/hash_map_unittest.cpp: In member function 'virtual void HashMapTest_Empty_Test::TestBody()':
../gtest_src/gtest/gtest.h:6842:55: warning: converting 'false' to pointer type for argument 1 of 'char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)' [-Wconversion-null]
(sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1)
^
../gtest_src/gtest/gtest.h:18899:52: note: in definition of macro 'GTEST_ASSERT_'
if (const ::testing::AssertionResult gtest_ar = (expression)) \
^
../gtest_src/gtest/gtest.h:18984:3: note: in expansion of macro 'GTEST_PRED_FORMAT2_'
GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_)
^
../gtest_src/gtest/gtest.h:19229:3: note: in expansion of macro 'EXPECT_PRED_FORMAT2'
EXPECT_PRED_FORMAT2(::testing::internal:: \
^
../gtest_src/gtest/gtest.h:19230:32: note: in expansion of macro 'GTEST_IS_NULL_LITERAL_'
EqHelper<GTEST_IS_NULL_LITERAL_(expected)>::Compare, \
^
../src/test/hash_map_unittest.cpp:139:5: note: in expansion of macro 'EXPECT_EQ'
EXPECT_EQ(false, simple_hash_map.empty());
^
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o compact_sequence_unittest compact_sequence_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_table_unittest hash_table_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o bit_edges_unittest bit_edges_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o kmer_unittest kmer_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_set_unittest hash_set_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o atomic_integer_unittest atomic_integer_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o vertex_status_unittest vertex_status_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o histgram_unittest histgram_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o managed_list_unittest managed_list_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o short_sequence_unittest short_sequence_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sequence_unittest sequence_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_map_unittest hash_map_unittest.o ../lib/libassembly.a ../lib/libgtest.a -latomic
make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
make check-TESTS
make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
make[4]: Entering directory '/<<PKGBUILDDIR>>/test'
PASS: bit_edges_unittest
PASS: compact_sequence_unittest
PASS: kmer_unittest
PASS: atomic_integer_unittest
PASS: vertex_status_unittest
PASS: histgram_unittest
PASS: managed_list_unittest
PASS: short_sequence_unittest
PASS: sequence_unittest
PASS: hash_set_unittest
PASS: hash_map_unittest
FAIL: hash_table_unittest
=====================================
idba 1.1.2: test/test-suite.log
=====================================
# TOTAL: 12
# PASS: 11
# SKIP: 0
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0
.. contents:: :depth: 2
FAIL: hash_table_unittest
=========================
Running main() from gtest_main.cc
[==========] Running 13 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 13 tests from HashTableTest
[ RUN ] HashTableTest.DefaultConstructor
[ OK ] HashTableTest.DefaultConstructor (136 ms)
[ RUN ] HashTableTest.CopyConstructor
[ OK ] HashTableTest.CopyConstructor (131 ms)
[ RUN ] HashTableTest.Iterator
[ OK ] HashTableTest.Iterator (116 ms)
[ RUN ] HashTableTest.InsertUnique
[ OK ] HashTableTest.InsertUnique (128 ms)
[ RUN ] HashTableTest.Find
[ OK ] HashTableTest.Find (136 ms)
[ RUN ] HashTableTest.Remove
[ OK ] HashTableTest.Remove (130 ms)
[ RUN ] HashTableTest.RemoveIf
[ OK ] HashTableTest.RemoveIf (103 ms)
[ RUN ] HashTableTest.ForEach
../src/test/hash_table_unittest.cpp:180: Failure
Value of: counter.count
Actual: 9863
Expected: simple_hash_table.size()
Which is: 10000
[ FAILED ] HashTableTest.ForEach (100 ms)
[ RUN ] HashTableTest.Size
[ OK ] HashTableTest.Size (85 ms)
[ RUN ] HashTableTest.Empty
[ OK ] HashTableTest.Empty (93 ms)
[ RUN ] HashTableTest.Swap
[ OK ] HashTableTest.Swap (95 ms)
[ RUN ] HashTableTest.Clear
[ OK ] HashTableTest.Clear (75 ms)
[ RUN ] HashTableTest.WriteAndRead
[ OK ] HashTableTest.WriteAndRead (122 ms)
[----------] 13 tests from HashTableTest (1459 ms total)
[----------] Global test environment tear-down
[==========] 13 tests from 1 test case ran. (1460 ms total)
[ PASSED ] 12 tests.
[ FAILED ] 1 test, listed below:
[ FAILED ] HashTableTest.ForEach
1 FAILED TEST
FAIL hash_table_unittest (exit status: 1)
============================================================================
Testsuite summary for idba 1.1.2
============================================================================
# TOTAL: 12
# PASS: 11
# SKIP: 0
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0
============================================================================
See test/test-suite.log
Please report to loneknightpy@gmail.com
============================================================================
Makefile:891: recipe for target 'test-suite.log' failed
make[4]: *** [test-suite.log] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/test'
Makefile:997: recipe for target 'check-TESTS' failed
make[3]: *** [check-TESTS] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
Makefile:1147: recipe for target 'check-am' failed
make[2]: *** [check-am] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
Makefile:357: recipe for target 'check-recursive' failed
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test: make -j4 check VERBOSE=1 returned exit code 2
debian/rules:10: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 20160707-1312
Finished
--------
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 173780
Build-Time: 641
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 299
Job: idba_1.1.2-2
Machine Architecture: armhf
Package: idba
Package-Time: 988
Source-Version: 1.1.2-2
Space: 173780
Status: attempted
Version: 1.1.2-2
--------------------------------------------------------------------------------
Finished at 20160707-1312
Build needed 00:16:28, 173780k disc space