htseq →
1.99.2-1 →
armhf → 2022-01-22 05:10:46
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| htseq 1.99.2-1 (armhf) Sat, 22 Jan 2022 04:58:29 +0000 |
+==============================================================================+
Package: htseq
Version: 1.99.2-1
Source Version: 1.99.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-47d7ddad-d740-4354-9491-821b411886b7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.3 MB in 10s (2507 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.0 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (dsc) [2161 B]
Get:2 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (tar) [37.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (diff) [11.1 kB]
Fetched 37.0 MB in 8s (4902 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-ALSCNd/htseq-1.99.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-ALSCNd' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-sc3fjb/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-sc3fjb/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-sc3fjb/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8970 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 69 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (57.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Filtered Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-sc3fjb/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Sources [552 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ Packages [633 B]
Fetched 2518 B in 0s (10.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
2to3 autoconf automake autopoint autotools-dev bsdextrautils cpp-11 cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
g++-11 gcc-11 gcc-11-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan6 libatomic1 libblas3 libbrotli1 libbsd0 libcc1-0
libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libfribidi0
libgcc-11-dev libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3
libharfbuzz0b libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblcms2-2 libmagic-mgc libmagic1 libmd0
libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libraqm0 librtmp1
libsigsegv2 libssh2-1 libstdc++-11-dev libstdc++6 libsub-override-perl
libtiff5 libtool libubsan1 libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-chardet python3-cycler python3-dateutil python3-debian python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-numpy python3-pil python3-pkg-resources
python3-pyparsing python3-pysam python3-setuptools python3-six python3.9
python3.9-dev python3.9-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales cython-doc
dh-make flit python3-build python3-tomli python3-installer gcc-11-doc
gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
liblcms2-utils libstdc++-11-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
python3-tk python3-venv python-cycler-doc dvipng ffmpeg ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose
python3-pyqt5 python3-scipy python3-sip python3-tornado texlive-extra-utils
texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-pytest
python-pil-doc python-pyparsing-doc python-setuptools-doc python3.9-venv
python3.9-doc binfmt-support swig-doc swig-examples swig4.0-examples
swig4.0-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl python3-apt python3-tk python3-olefile
The following NEW packages will be installed:
2to3 autoconf automake autopoint autotools-dev bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts3
libhtscodecs2 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2
libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libraqm0 librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2
libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types
mime-support po-debconf python-matplotlib-data python3 python3-all
python3-all-dev python3-chardet python3-cycler python3-dateutil
python3-debian python3-dev python3-distutils python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pil
python3-pkg-resources python3-pyparsing python3-pysam python3-setuptools
python3-six python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-htseq-dummy swig swig4.0 ttf-bitstream-vera zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-11-dev
libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6 libubsan1
13 upgraded, 113 newly installed, 0 to remove and 56 not upgraded.
Need to get 91.9 MB of archives.
After this operation, 132 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-sc3fjb/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.9-4+rpi1 [795 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-13+rpi1 [37.9 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-13+rpi1 [207 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-13+rpi1 [36.1 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-13+rpi1 [88.0 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-13+rpi1 [8196 B]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-13+rpi1 [1947 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-13+rpi1 [799 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-13+rpi1 [7910 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-13+rpi1 [1961 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-13+rpi1 [701 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-13+rpi1 [14.0 MB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-13+rpi1 [7071 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-13+rpi1 [467 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.3-1 [81.5 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.9-4+rpi1 [1582 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1 [38.4 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.9-4+rpi1 [1610 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.9-4+rpi1 [485 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1 [21.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1 [38.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-6 [136 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.9-3 [79.5 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf 2to3 all 3.9.7-1 [22.6 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.24-2 [1234 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.9-3 [146 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220119 [110 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.3-1 [136 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-13+rpi1 [235 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.2-1 [1210 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.0+dfsg-1 [250 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-3 [150 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.9-4+rpi1 [1411 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.9-4+rpi1 [2998 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.7-1 [21.8 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.7-1 [1068 B]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-2 [4154 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1 [1052 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.9-4+rpi1 [501 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.7-1 [25.3 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.7-1 [1064 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-debian all 0.1.43 [115 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 8.4.0-1 [419 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-2 [6035 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2 [1411 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 58.2.0-1 [396 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.0.2-1 [1221 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.0.2-1 [330 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 91.9 MB in 19s (4766 kB/s)
Selecting previously unselected package libpython3.9-minimal:armhf.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../libpython3.9-minimal_3.9.9-4+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.9-4+rpi1) ...
Preparing to unpack .../libcc1-0_11.2.0-13+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../gcc-11-base_11.2.0-13+rpi1_armhf.deb ...
Unpacking gcc-11-base:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Setting up gcc-11-base:armhf (11.2.0-13+rpi1) ...
(Reading database ... 12835 files and directories currently installed.)
Preparing to unpack .../libgcc-s1_11.2.0-13+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Setting up libgcc-s1:armhf (11.2.0-13+rpi1) ...
(Reading database ... 12835 files and directories currently installed.)
Preparing to unpack .../0-libgomp1_11.2.0-13+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../1-libatomic1_11.2.0-13+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../2-libasan6_11.2.0-13+rpi1_armhf.deb ...
Unpacking libasan6:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../3-libubsan1_11.2.0-13+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../4-g++-11_11.2.0-13+rpi1_armhf.deb ...
Unpacking g++-11 (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../5-libstdc++-11-dev_11.2.0-13+rpi1_armhf.deb ...
Unpacking libstdc++-11-dev:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../6-libgcc-11-dev_11.2.0-13+rpi1_armhf.deb ...
Unpacking libgcc-11-dev:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../7-gcc-11_11.2.0-13+rpi1_armhf.deb ...
Unpacking gcc-11 (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../8-cpp-11_11.2.0-13+rpi1_armhf.deb ...
Unpacking cpp-11 (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Preparing to unpack .../9-libstdc++6_11.2.0-13+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (11.2.0-13+rpi1) over (11.2.0-10+rpi1) ...
Setting up libstdc++6:armhf (11.2.0-13+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
(Reading database ... 12835 files and directories currently installed.)
Preparing to unpack .../libexpat1_2.4.3-1_armhf.deb ...
Unpacking libexpat1:armhf (2.4.3-1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../python3.9-minimal_3.9.9-4+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.9-4+rpi1) ...
Setting up libpython3.9-minimal:armhf (3.9.9-4+rpi1) ...
Setting up libexpat1:armhf (2.4.3-1) ...
Setting up python3.9-minimal (3.9.9-4+rpi1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12853 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.7-1_armhf.deb ...
Unpacking python3-minimal (3.9.7-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package mailcap.
Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ...
Unpacking mailcap (3.70+nmu1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../3-mime-support_3.66_all.deb ...
Unpacking mime-support (3.66) ...
Selecting previously unselected package libmpdec3:armhf.
Preparing to unpack .../4-libmpdec3_2.5.1-2+rpi1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../5-libpython3.9-stdlib_3.9.9-4+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.9-4+rpi1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../6-python3.9_3.9.9-4+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.9-4+rpi1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../7-libpython3-stdlib_3.9.7-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.7-1) ...
Setting up python3-minimal (3.9.7-1) ...
Selecting previously unselected package python3.
(Reading database ... 13275 files and directories currently installed.)
Preparing to unpack .../000-python3_3.9.7-1_armhf.deb ...
Unpacking python3 (3.9.7-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-8_armhf.deb ...
Unpacking groff-base (1.22.4-8) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../003-bsdextrautils_2.37.2-6_armhf.deb ...
Unpacking bsdextrautils (2.37.2-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../004-libpipeline1_1.5.5-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.5-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.9.4-4_armhf.deb ...
Unpacking man-db (2.9.4-4) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../006-libmagic-mgc_1%3a5.41-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.41-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../007-libmagic1_1%3a5.41-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.41-2) ...
Selecting previously unselected package file.
Preparing to unpack .../008-file_1%3a5.41-2_armhf.deb ...
Unpacking file (1:5.41-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../009-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../010-python3-lib2to3_3.9.9-3_all.deb ...
Unpacking python3-lib2to3 (3.9.9-3) ...
Selecting previously unselected package 2to3.
Preparing to unpack .../011-2to3_3.9.7-1_all.deb ...
Unpacking 2to3 (3.9.7-1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../012-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../013-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../014-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../015-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../016-automake_1%3a1.16.5-1.1_all.deb ...
Unpacking automake (1:1.16.5-1.1) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../017-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package cython3.
Preparing to unpack .../018-cython3_0.29.24-2_armhf.deb ...
Unpacking cython3 (0.29.24-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../019-libdebhelper-perl_13.6_all.deb ...
Unpacking libdebhelper-perl (13.6) ...
Selecting previously unselected package libtool.
Preparing to unpack .../020-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../021-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../023-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../025-dh-strip-nondeterminism_1.13.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../026-libelf1_0.186-1_armhf.deb ...
Unpacking libelf1:armhf (0.186-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../027-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../028-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../029-libxml2_2.9.12+dfsg-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.12+dfsg-5) ...
Selecting previously unselected package gettext.
Preparing to unpack .../030-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../031-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../033-debhelper_13.6_all.deb ...
Unpacking debhelper (13.6) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../034-python3-distutils_3.9.9-3_all.deb ...
Unpacking python3-distutils (3.9.9-3) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../035-dh-python_5.20220119_all.deb ...
Unpacking dh-python (5.20220119) ...
Selecting previously unselected package fonts-lyx.
Preparing to unpack .../036-fonts-lyx_2.3.6-1_all.deb ...
Unpacking fonts-lyx (2.3.6-1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../037-libblas3_3.10.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.10.0-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../038-libbrotli1_1.0.9-2+b1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../039-libmd0_1.0.4-1_armhf.deb ...
Unpacking libmd0:armhf (1.0.4-1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../040-libbsd0_0.11.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.3-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../041-libnghttp2-14_1.43.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../042-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../043-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../044-libssh2-1_1.10.0-2_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-2) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../045-libcurl3-gnutls_7.81.0-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.81.0-1) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../046-libdeflate0_1.8-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.8-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../047-libexpat1-dev_2.4.3-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.4.3-1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../048-libpng16-16_1.6.37-3_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../049-libfreetype6_2.11.1+dfsg-1_armhf.deb ...
Unpacking libfreetype6:armhf (2.11.1+dfsg-1) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../050-libfribidi0_1.0.8-2_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.8-2) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../051-libgfortran5_11.2.0-13+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (11.2.0-13+rpi1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../052-libglib2.0-0_2.70.2-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.70.2-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../053-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../054-libharfbuzz0b_2.7.4-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (2.7.4-1) ...
Selecting previously unselected package libhtscodecs2:armhf.
Preparing to unpack .../055-libhtscodecs2_1.1.1-3_armhf.deb ...
Unpacking libhtscodecs2:armhf (1.1.1-3) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../056-libhts3_1.13+ds-2_armhf.deb ...
Unpacking libhts3:armhf (1.13+ds-2) ...
Selecting previously unselected package libimagequant0:armhf.
Preparing to unpack .../057-libimagequant0_2.17.0-1_armhf.deb ...
Unpacking libimagequant0:armhf (2.17.0-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../058-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../059-libjpeg62-turbo_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.2-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../060-libjs-jquery_3.5.1+dfsg+~3.5.5-8_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-8) ...
Selecting previously unselected package libjs-jquery-ui.
Preparing to unpack .../061-libjs-jquery-ui_1.13.0+dfsg-1_all.deb ...
Unpacking libjs-jquery-ui (1.13.0+dfsg-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../062-libjs-underscore_1.9.1~dfsg-4_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-4) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../063-libjs-sphinxdoc_4.3.2-1_all.deb ...
Unpacking libjs-sphinxdoc (4.3.2-1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../064-liblapack3_3.10.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.10.0-2) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../065-liblcms2-2_2.12~rc1-2_armhf.deb ...
Unpacking liblcms2-2:armhf (2.12~rc1-2) ...
Selecting previously unselected package libopenjp2-7:armhf.
Preparing to unpack .../066-libopenjp2-7_2.4.0-3_armhf.deb ...
Unpacking libopenjp2-7:armhf (2.4.0-3) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../067-libpython3.9_3.9.9-4+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.9-4+rpi1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../068-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../069-libpython3.9-dev_3.9.9-4+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.9-4+rpi1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../070-libpython3-dev_3.9.7-1_armhf.deb ...
Unpacking libpython3-dev:armhf (3.9.7-1) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../071-libpython3-all-dev_3.9.7-1_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.9.7-1) ...
Selecting previously unselected package libraqm0:armhf.
Preparing to unpack .../072-libraqm0_0.7.0-4_armhf.deb ...
Unpacking libraqm0:armhf (0.7.0-4) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../073-libwebp6_0.6.1-2.1_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2.1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../074-libtiff5_4.3.0-2_armhf.deb ...
Unpacking libtiff5:armhf (4.3.0-2) ...
Selecting previously unselected package libwebpdemux2:armhf.
Preparing to unpack .../075-libwebpdemux2_0.6.1-2.1_armhf.deb ...
Unpacking libwebpdemux2:armhf (0.6.1-2.1) ...
Selecting previously unselected package libwebpmux3:armhf.
Preparing to unpack .../076-libwebpmux3_0.6.1-2.1_armhf.deb ...
Unpacking libwebpmux3:armhf (0.6.1-2.1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../077-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../078-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../079-libxcb1_1.14-3_armhf.deb ...
Unpacking libxcb1:armhf (1.14-3) ...
Selecting previously unselected package ttf-bitstream-vera.
Preparing to unpack .../080-ttf-bitstream-vera_1.10-8.1_all.deb ...
Unpacking ttf-bitstream-vera (1.10-8.1) ...
Selecting previously unselected package python-matplotlib-data.
Preparing to unpack .../081-python-matplotlib-data_3.3.4-2_all.deb ...
Unpacking python-matplotlib-data (3.3.4-2) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../082-python3-all_3.9.7-1_armhf.deb ...
Unpacking python3-all (3.9.7-1) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../083-python3.9-dev_3.9.9-4+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.9-4+rpi1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../084-python3-dev_3.9.7-1_armhf.deb ...
Unpacking python3-dev (3.9.7-1) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../085-python3-all-dev_3.9.7-1_armhf.deb ...
Unpacking python3-all-dev (3.9.7-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../086-python3-pkg-resources_58.2.0-1_all.deb ...
Unpacking python3-pkg-resources (58.2.0-1) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../087-python3-chardet_4.0.0-1_all.deb ...
Unpacking python3-chardet (4.0.0-1) ...
Selecting previously unselected package python3-cycler.
Preparing to unpack .../088-python3-cycler_0.11.0-1_all.deb ...
Unpacking python3-cycler (0.11.0-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../089-python3-six_1.16.0-3_all.deb ...
Unpacking python3-six (1.16.0-3) ...
Selecting previously unselected package python3-dateutil.
Preparing to unpack .../090-python3-dateutil_2.8.1-6_all.deb ...
Unpacking python3-dateutil (2.8.1-6) ...
Selecting previously unselected package python3-debian.
Preparing to unpack .../091-python3-debian_0.1.43_all.deb ...
Unpacking python3-debian (0.1.43) ...
Selecting previously unselected package python3-kiwisolver.
Preparing to unpack .../092-python3-kiwisolver_1.3.2-1_armhf.deb ...
Unpacking python3-kiwisolver (1.3.2-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../093-python3-pyparsing_2.4.7-1_all.deb ...
Unpacking python3-pyparsing (2.4.7-1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../094-python3-numpy_1%3a1.21.5-1_armhf.deb ...
Unpacking python3-numpy (1:1.21.5-1) ...
Selecting previously unselected package python3-pil:armhf.
Preparing to unpack .../095-python3-pil_8.4.0-1_armhf.deb ...
Unpacking python3-pil:armhf (8.4.0-1) ...
Selecting previously unselected package python3-matplotlib.
Preparing to unpack .../096-python3-matplotlib_3.3.4-2_armhf.deb ...
Unpacking python3-matplotlib (3.3.4-2) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../097-python3-pysam_0.17.0+ds-2_armhf.deb ...
Unpacking python3-pysam (0.17.0+ds-2) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../098-python3-setuptools_58.2.0-1_all.deb ...
Unpacking python3-setuptools (58.2.0-1) ...
Selecting previously unselected package swig4.0.
Preparing to unpack .../099-swig4.0_4.0.2-1_armhf.deb ...
Unpacking swig4.0 (4.0.2-1) ...
Selecting previously unselected package swig.
Preparing to unpack .../100-swig_4.0.2-1_all.deb ...
Unpacking swig (4.0.2-1) ...
Selecting previously unselected package sbuild-build-depends-htseq-dummy.
Preparing to unpack .../101-sbuild-build-depends-htseq-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.1.1-3) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.5-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up cpp-11 (11.2.0-13+rpi1) ...
Setting up liblcms2-2:armhf (2.12~rc1-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up ttf-bitstream-vera (1.10-8.1) ...
Setting up bsdextrautils (2.37.2-6) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.70.2-1) ...
No schema files found: doing nothing.
Setting up fonts-lyx (2.3.6-1) ...
Setting up libdebhelper-perl (13.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.41-2) ...
Setting up libgomp1:armhf (11.2.0-13+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libasan6:armhf (11.2.0-13+rpi1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.4.3-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libimagequant0:armhf (2.17.0-1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libatomic1:armhf (11.2.0-13+rpi1) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libgfortran5:armhf (11.2.0-13+rpi1) ...
Setting up libubsan1:armhf (11.2.0-13+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libgcc-11-dev:armhf (11.2.0-13+rpi1) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libopenjp2-7:armhf (2.4.0-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ...
Setting up swig4.0 (4.0.2-1) ...
Setting up python-matplotlib-data (3.3.4-2) ...
Setting up libwebpmux3:armhf (0.6.1-2.1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up mailcap (3.70+nmu1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-13+rpi1) ...
Setting up libpython3.9-stdlib:armhf (3.9.9-4+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.7-1) ...
Setting up libjs-underscore (1.9.1~dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up swig (4.0.2-1) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-15) ...
Setting up libwebpdemux2:armhf (0.6.1-2.1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.81.0-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.9:armhf (3.9.9-4+rpi1) ...
Setting up libjs-jquery-ui (1.13.0+dfsg-1) ...
Setting up libfreetype6:armhf (2.11.1+dfsg-1) ...
Setting up libjs-sphinxdoc (4.3.2-1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-13+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up gcc-11 (11.2.0-13+rpi1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up python3.9 (3.9.9-4+rpi1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up g++-11 (11.2.0-13+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.9-dev:armhf (3.9.9-4+rpi1) ...
Setting up python3 (3.9.7-1) ...
Setting up man-db (2.9.4-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-six (1.16.0-3) ...
Setting up dh-autoreconf (20) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up libraqm0:armhf (0.7.0-4) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.3.2-1) ...
Setting up cython3 (0.29.24-2) ...
Setting up python3.9-dev (3.9.9-4+rpi1) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up python3-lib2to3 (3.9.9-3) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.9-3) ...
Setting up dh-python (5.20220119) ...
Setting up python3-pysam (0.17.0+ds-2) ...
Setting up libpython3-dev:armhf (3.9.7-1) ...
Setting up python3-setuptools (58.2.0-1) ...
Setting up python3-all (3.9.7-1) ...
Setting up debhelper (13.6) ...
Setting up 2to3 (3.9.7-1) ...
Setting up python3-pil:armhf (8.4.0-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.7-1) ...
Setting up python3-debian (0.1.43) ...
Setting up python3-dev (3.9.7-1) ...
Setting up python3-numpy (1:1.21.5-1) ...
Setting up python3-all-dev (3.9.7-1) ...
Setting up python3-matplotlib (3.3.4-2) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-13+rpi1 gcc-11_11.2.0-13+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-13+rpi1 libstdc++6_11.2.0-13+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: 2to3_3.9.7-1 adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-13+rpi1 cython3_0.29.24-2 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-13+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-13+rpi1 gcc-11-base_11.2.0-13+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-13+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-13+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblas3_3.10.0-2 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-13+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libexpat1_2.4.3-1 libexpat1-dev_2.4.3-1 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.13.0-1 libfreetype6_2.11.1+dfsg-1 libfribidi0_1.0.8-2 libgcc-11-dev_11.2.0-13+rpi1 libgcc-s1_11.2.0-13+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-13+rpi1 libglib2.0-0_2.70.2-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-13+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.17.0-1 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui_1.13.0+dfsg-1 libjs-sphinxdoc_4.3.2-1 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-2 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.4.0-3 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.7-1 libpython3-dev_3.9.7-1 libpython3-stdlib_3.9.7-1 libpython3.9_3.9.9-4+rpi1 libpython3.9-dev_3.9.9-4+rpi1 libpython3.9-minimal_3.9.9-4+rpi1 libpython3.9-stdlib_3.9.9-4+rpi1 libraqm0_0.7.0-4 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-13+rpi1 libstdc++6_11.2.0-13+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.3.0-2 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.4-2 python3_3.9.7-1 python3-all_3.9.7-1 python3-all-dev_3.9.7-1 python3-chardet_4.0.0-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-debian_0.1.43 python3-dev_3.9.7-1 python3-distutils_3.9.9-3 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.9-3 python3-matplotlib_3.3.4-2 python3-minimal_3.9.7-1 python3-numpy_1:1.21.5-1 python3-pil_8.4.0-1 python3-pkg-resources_58.2.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.17.0+ds-2 python3-setuptools_58.2.0-1 python3-six_1.16.0-3 python3.9_3.9.9-4+rpi1 python3.9-dev_3.9.9-4+rpi1 python3.9-minimal_3.9.9-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 swig_4.0.2-1 swig4.0_4.0.2-1 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 ttf-bitstream-vera_1.10-8.1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.WLzDIGv3/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 16 18:49:05 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_1.99.2-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_1.99.2.orig.tar.gz
dpkg-source: info: unpacking htseq_1.99.2-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-47d7ddad-d740-4354-9491-821b411886b7
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 1.99.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:237: python3.9 setup.py clean
/bin/sh: 1: git: not found
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config
/bin/sh: 1: git: not found
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build
/bin/sh: 1: git: not found
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.24
SWIGging
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting scripts/htseq-qa -> build/scripts-3.9
copying and adjusting scripts/htseq-count -> build/scripts-3.9
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.9
changing mode of build/scripts-3.9/htseq-qa from 644 to 755
changing mode of build/scripts-3.9/htseq-count from 644 to 755
changing mode of build/scripts-3.9/htseq-count-barcodes from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-htseq/ -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
/bin/sh: 1: git: not found
running install
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.24
SWIGging
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StepVector.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StretchVector.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/utils.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/features.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/qa.py to qa.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count.py to count.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/features.py to features.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StepVector.py to StepVector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_version.py to _version.cpython-39.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
adding license file 'LICENSE'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq-1.99.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 693811 new size 694478
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 469442 new size 472044
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_1.99.2-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_1.99.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../htseq_1.99.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-01-22T05:10:43Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_1.99.2-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Sun, 16 Jan 2022 18:57:47 +0100
Source: htseq
Binary: python3-htseq python3-htseq-dbgsym
Architecture: armhf
Version: 1.99.2-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (1.99.2-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
84118c1d2d0f2c3c1c54b270d453683b346f15f3 7666 htseq_1.99.2-1_armhf.buildinfo
d398e8203bc76ee272cd813de0fa0240bbe80adb 1182196 python3-htseq-dbgsym_1.99.2-1_armhf.deb
1190ed32af29c18050301d7b94b9b879dd197d31 242772 python3-htseq_1.99.2-1_armhf.deb
Checksums-Sha256:
fd8da9e10800c7cd2d8626344e98c4385e5fcfb05d1ab4e7fc7874255b7402cb 7666 htseq_1.99.2-1_armhf.buildinfo
477f7266cfc73f2fad012293da70077fde68fd787684ad9310945d1c6cb2643a 1182196 python3-htseq-dbgsym_1.99.2-1_armhf.deb
7258e09aaae451481ce75d6866544fd487a5ce79230e3672f218258ee644a486 242772 python3-htseq_1.99.2-1_armhf.deb
Files:
0436f0b25cbe05f0eb02aebf7e3b96e8 7666 python optional htseq_1.99.2-1_armhf.buildinfo
19ba8be1b1dcd675d59bc106cd42f6f1 1182196 debug optional python3-htseq-dbgsym_1.99.2-1_armhf.deb
bd99c52663adc4f5f8ca4f357356db2f 242772 python optional python3-htseq_1.99.2-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-htseq-dbgsym_1.99.2-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 1182196 bytes: control archive=652 bytes.
430 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq
Version: 1.99.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1269
Depends: python3-htseq (= 1.99.2-1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 1a09939de17b41d4271b80f5e34e65f1039f3bc0 21a55544659ed1044d3696fee88f8aa883fb9136
drwxr-xr-x root/root 0 2022-01-16 17:57 ./
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/1a/
-rw-r--r-- root/root 278052 2022-01-16 17:57 ./usr/lib/debug/.build-id/1a/09939de17b41d4271b80f5e34e65f1039f3bc0.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 1003788 2022-01-16 17:57 ./usr/lib/debug/.build-id/21/a55544659ed1044d3696fee88f8aa883fb9136.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2956 2022-01-16 17:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-htseq.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-01-16 17:57 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_1.99.2-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 242772 bytes: control archive=2084 bytes.
1042 bytes, 24 lines control
2644 bytes, 30 lines md5sums
263 bytes, 12 lines * postinst #!/bin/sh
412 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq
Version: 1.99.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 847
Depends: python3 (<< 3.10), python3 (>= 3.9~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
drwxr-xr-x root/root 0 2022-01-16 17:57 ./
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/bin/
-rwxr-xr-x root/root 75 2022-01-16 17:57 ./usr/bin/htseq-count
-rwxr-xr-x root/root 103 2022-01-16 17:57 ./usr/bin/htseq-count-barcodes
-rwxr-xr-x root/root 69 2022-01-16 17:57 ./usr/bin/htseq-qa
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq-1.99.2.egg-info/
-rw-r--r-- root/root 3123 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq-1.99.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq-1.99.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 93 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq-1.99.2.egg-info/requires.txt
-rw-r--r-- root/root 6 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq-1.99.2.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/
-rw-r--r-- root/root 26344 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/StepVector.py
-rw-r--r-- root/root 17874 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/StretchVector.py
-rw-r--r-- root/root 513860 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 3486 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root 107572 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 40518 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/__init__.py
-rw-r--r-- root/root 22 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/_version.py
-rw-r--r-- root/root 14872 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/features.py
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root 0 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/__init__.py
-rw-r--r-- root/root 15948 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count.py
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_features/
-rw-r--r-- root/root 0 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_features/__init__.py
-rw-r--r-- root/root 14676 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py
-rw-r--r-- root/root 5935 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py
-rw-r--r-- root/root 2799 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_features/reads_stats.py
-rw-r--r-- root/root 26476 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_with_barcodes.py
-rw-r--r-- root/root 10427 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/qa.py
-rw-r--r-- root/root 8700 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/utils.py
-rw-r--r-- root/root 2835 2021-11-19 20:41 ./usr/lib/python3/dist-packages/HTSeq/utils.py
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/doc/python3-htseq/
-rw-r--r-- root/root 1744 2022-01-16 17:57 ./usr/share/doc/python3-htseq/changelog.Debian.gz
-rw-r--r-- root/root 6779 2021-11-19 20:41 ./usr/share/doc/python3-htseq/changelog.gz
-rw-r--r-- root/root 959 2022-01-16 17:57 ./usr/share/doc/python3-htseq/copyright
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/man/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/man/man1/
-rw-r--r-- root/root 5662 2022-01-16 17:57 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1994 2022-01-16 17:57 ./usr/share/man/man1/htseq-qa.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 106712
Build-Time: 181
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 524
Job: htseq_1.99.2-1
Machine Architecture: armhf
Package: htseq
Package-Time: 734
Source-Version: 1.99.2-1
Space: 106712
Status: successful
Version: 1.99.2-1
--------------------------------------------------------------------------------
Finished at 2022-01-22T05:10:43Z
Build needed 00:12:14, 106712k disk space