htseq →
0.5.4p3-2+b1 →
armhf → 2015-09-10 15:25:52
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01
╔══════════════════════════════════════════════════════════════════════════════╗
║ htseq 0.5.4p3-2+b1 (armhf) 10 Sep 2015 15:13 ║
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Package: htseq
Version: 0.5.4p3-2+b1
Source Version: 0.5.4p3-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/htseq-3vtCmP/htseq-0.5.4p3' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/htseq-3vtCmP' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-2e216308-b54b-4337-87bb-8fa2dfde7f8c' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8316 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
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Check APT
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NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-htseq.git
Need to get 532 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main htseq 0.5.4p3-2 (dsc) [1526 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main htseq 0.5.4p3-2 (tar) [527 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main htseq 0.5.4p3-2 (diff) [3585 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-ehS0R3/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python-setuptools (>= 0.6b3), python-all-dev (>= 2.6.5), python-sphinx, python-numpy (>= 1:1.3.0), swig, cython (>= 0.11)
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python-setuptools (>= 0.6b3), python-all-dev (>= 2.6.5), python-sphinx, python-numpy (>= 1:1.3.0), swig, cython (>= 0.11)
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/«BUILDDIR»/resolver-IQYKkv/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install htseq build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cython debhelper docutils-common file fonts-font-awesome
fonts-lato gettext gettext-base groff-base intltool-debian libasprintf0v5
libblas-common libblas3 libcroco3 libexpat1 libexpat1-dev libffi6
libgfortran3 libglib2.0-0 libjs-jquery libjs-modernizr libjs-sphinxdoc
libjs-underscore liblapack3 libmagic1 libpipeline1 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0
libunistring0 libxml2 man-db mime-support po-debconf python python-alabaster
python-all python-all-dev python-babel python-babel-localedata python-dev
python-docutils python-jinja2 python-markupsafe python-minimal python-numpy
python-pkg-resources python-pygments python-roman python-setuptools
python-six python-sphinx python-sphinx-rtd-theme python-tz python2.7
python2.7-dev python2.7-minimal sgml-base sphinx-common
sphinx-rtd-theme-common swig swig2.0 xml-core
Suggested packages:
wamerican wordlist whois vacation cython-doc dh-make gettext-doc groff less
www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended
texlive-latex-base texlive-lang-french fonts-linuxlibertine
ttf-linux-libertine python-jinja2-doc gfortran python-nose python-numpy-dbg
python-numpy-doc ttf-bitstream-vera libjs-mathjax dvipng texlive-latex-extra
texlive-fonts-recommended python2.7-doc binfmt-support sgml-base-doc
swig-doc swig-examples swig2.0-examples swig2.0-doc
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xdg-user-dirs javascript-common
libmail-sendmail-perl python-pil libpaper-utils docutils-doc python-chardet
sphinx-doc
The following NEW packages will be installed:
bsdmainutils cython debhelper docutils-common file fonts-font-awesome
fonts-lato gettext gettext-base groff-base intltool-debian libasprintf0v5
libblas-common libblas3 libcroco3 libexpat1 libexpat1-dev libffi6
libgfortran3 libglib2.0-0 libjs-jquery libjs-modernizr libjs-sphinxdoc
libjs-underscore liblapack3 libmagic1 libpipeline1 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0
libunistring0 libxml2 man-db mime-support po-debconf python python-alabaster
python-all python-all-dev python-babel python-babel-localedata python-dev
python-docutils python-jinja2 python-markupsafe python-minimal python-numpy
python-pkg-resources python-pygments python-roman python-setuptools
python-six python-sphinx python-sphinx-rtd-theme python-tz python2.7
python2.7-dev python2.7-minimal sbuild-build-depends-htseq-dummy sgml-base
sphinx-common sphinx-rtd-theme-common swig swig2.0 xml-core
0 upgraded, 71 newly installed, 0 to remove and 15 not upgraded.
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After this operation, 133 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.2-1 [973 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0v5 armhf 0.19.5.1-1 [32.0 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-3 [380 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
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Get:13 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-3 [1815 kB]
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Get:15 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-3 [1163 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-3 [259 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
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Get:22 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
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Get:34 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
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Get:36 http://172.17.0.1/private/ stretch-staging/main xml-core all 0.13+nmu2 [24.2 kB]
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Get:38 http://172.17.0.1/private/ stretch-staging/main fonts-font-awesome all 4.3.0~dfsg-2 [437 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
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Get:41 http://172.17.0.1/private/ stretch-staging/main libjs-jquery all 1.11.3+dfsg-3 [163 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libjs-sphinxdoc all 1.3.1-6 [53.0 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libpython-dev armhf 2.7.9-1 [19.6 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libpython-all-dev armhf 2.7.9-1 [1012 B]
Get:47 http://172.17.0.1/private/ stretch-staging/main python-all armhf 2.7.9-1 [994 B]
Get:48 http://172.17.0.1/private/ stretch-staging/main python2.7-dev armhf 2.7.10-3 [279 kB]
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Get:51 http://172.17.0.1/private/ stretch-staging/main python-babel-localedata all 1.3+dfsg.1-5 [1933 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main python-pkg-resources all 18.0.1-2 [73.6 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main python-six all 1.9.0-5 [13.7 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main python-tz all 2012c+dfsg-0.1 [31.9 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main python-babel all 1.3+dfsg.1-5 [77.8 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main python-roman all 2.0.0-1 [7898 B]
Get:57 http://172.17.0.1/private/ stretch-staging/main python-docutils all 0.12+dfsg-1 [361 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main python-markupsafe armhf 0.23-2 [15.6 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main python-jinja2 all 2.8-1 [111 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main python-numpy armhf 1:1.8.2-2 [1498 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main python-pygments all 2.0.1+dfsg-1.1 [481 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main python-setuptools all 18.0.1-2 [180 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main python-alabaster all 0.7.6-1 [15.9 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libjs-modernizr all 2.6.2+ds1-1 [71.3 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main sphinx-rtd-theme-common all 0.1.8-2 [109 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main python-sphinx-rtd-theme all 0.1.8-2 [14.0 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main sphinx-common all 1.3.1-6 [320 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main python-sphinx all 1.3.1-6 [352 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main swig2.0 armhf 2.0.12-1 [1071 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main swig armhf 2.0.12-1 [285 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-16+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.10 base-files_9.2+rpi1 base-passwd_3.5.38 bash_4.3-13 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi1 cpp-4.9_4.9.3-4 cpp-5_5.2.1-16+rpi1 cython_0.22.1-2 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 docutils-common_0.12+dfsg-1 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 fonts-font-awesome_4.3.0~dfsg-2 fonts-lato_2.0-1 g++_4:5.2.1-4+rpi1 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc_4:5.2.1-4+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-16+rpi1 gcc-5-base_5.2.1-16+rpi1 gettext_0.19.5.1-1 gettext-base_0.19.5.1-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libasan1_4.9.3-4 libasan2_5.2.1-16+rpi1 libasprintf0v5_0.19.5.1-1 libatomic1_5.2.1-16+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblas-common_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.26.2-9 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-16+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-16+rpi1 libgcc1_1:5.2.1-16+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.2.1-16+rpi1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-16+rpi1 libgpg-error0_1.19-2 libisl13_0.14-2 libjs-jquery_1.11.3+dfsg-3 libjs-modernizr_2.6.2+ds1-1 libjs-sphinxdoc_1.3.1-6 libjs-underscore_1.7.0~dfsg-1 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblapack3_3.5.0-4 liblocale-gettext-perl_1.05-9 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.22+15-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-3 libpython2.7-dev_2.7.10-3 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libreadline6_6.3-8 libseccomp2_2.2.3-1 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.26.2-9 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 libsystemd0_225-1 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-16+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.2-1 mawk_1.3.3-17 mime-support_3.59 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-alabaster_0.7.6-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-babel_1.3+dfsg.1-5 python-babel-localedata_1.3+dfsg.1-5 python-dev_2.7.9-1 python-docutils_0.12+dfsg-1 python-jinja2_2.8-1 python-markupsafe_0.23-2 python-minimal_2.7.9-1 python-numpy_1:1.8.2-2 python-pkg-resources_18.0.1-2 python-pygments_2.0.1+dfsg-1.1 python-roman_2.0.0-1 python-setuptools_18.0.1-2 python-six_1.9.0-5 python-sphinx_1.3.1-6 python-sphinx-rtd-theme_0.1.8-2 python-tz_2012c+dfsg-0.1 python2.7_2.7.10-3 python2.7-dev_2.7.10-3 python2.7-minimal_2.7.10-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.3.1-6 sphinx-rtd-theme-common_0.1.8-2 startpar_0.59-3 swig_2.0.12-1 swig2.0_2.0.12-1 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 udev_225-1 util-linux_2.26.2-9 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Sep 5 19:22:27 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./htseq_0.5.4p3-2.dsc
dpkg-source: info: extracting htseq in htseq-0.5.4p3
dpkg-source: info: unpacking htseq_0.5.4p3.orig.tar.gz
dpkg-source: info: unpacking htseq_0.5.4p3-2.debian.tar.gz
dpkg-source: info: applying fix_version.patch
dpkg-source: info: applying add_sphinx_man_pages.patch
Check disc space
────────────────
Sufficient free space for build
Hack binNMU version
───────────────────
Created changelog entry for binNMU version 0.5.4p3-2+b1
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-2e216308-b54b-4337-87bb-8fa2dfde7f8c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package htseq
dpkg-buildpackage: source version 0.5.4p3-2+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build htseq-0.5.4p3
dpkg-buildpackage: host architecture armhf
dpkg-source: info: using options from htseq-0.5.4p3/debian/source/options: --extend-diff-ignore=HTSeq\.egg-info/.* --extend-diff-ignore=HTSeq/StepVector\.py --extend-diff-ignore=src/StepVector_wrap\.cxx --extend-diff-ignore=src/_HTSeq\.c
fakeroot debian/rules clean
dh clean --with python2,sphinxdoc
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
make -C src clean
make[2]: Entering directory '/«PKGBUILDDIR»/src'
rm -f StepVector_wrap.cxx ../HTSeq/StepVector.py _HTSeq.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
rm -rf dist build MANIFEST
rm -rf *.egg-info
dh_auto_clean
python setup.py clean -a
/usr/lib/python2.7/dist-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.5.4p3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch --with python2,sphinxdoc
dh_testdir -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
make -C src
make[2]: Entering directory '/«PKGBUILDDIR»/src'
swig -Wall -c++ -python StepVector.i
mv StepVector.py ../HTSeq
cython HTSeq/_HTSeq.pyx -o _HTSeq.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
python setup.py build
/usr/lib/python2.7/dist-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.5.4p3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/__init__.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/_HTSeq_internal.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/StepVector.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/_version.py -> build/lib.linux-armv7l-2.7/HTSeq
creating build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/qa.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/count.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/src
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-armv7l-2.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/src/_HTSeq.o -o build/lib.linux-armv7l-2.7/HTSeq/_HTSeq.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-armv7l-2.7/src/StepVector_wrap.o -w
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
c++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/src/StepVector_wrap.o -o build/lib.linux-armv7l-2.7/HTSeq/_StepVector.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/htseq-qa -> build/scripts-2.7
copying and adjusting scripts/htseq-count -> build/scripts-2.7
changing mode of build/scripts-2.7/htseq-qa from 664 to 775
changing mode of build/scripts-2.7/htseq-count from 664 to 775
# build the man pages for the binary package
python setup.py build_sphinx -b man
/usr/lib/python2.7/dist-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.5.4p3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running build_sphinx
creating /«PKGBUILDDIR»/build/sphinx
creating /«PKGBUILDDIR»/build/sphinx/doctrees
creating /«PKGBUILDDIR»/build/sphinx/man
Running Sphinx v1.3.1
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 14 added, 0 changed, 0 removed
reading sources... [ 7%] alignments
reading sources... [ 14%] contrib
reading sources... [ 21%] count
reading sources... [ 28%] features
reading sources... [ 35%] genomic
reading sources... [ 42%] history
reading sources... [ 50%] index
reading sources... [ 57%] install
reading sources... [ 64%] misc
reading sources... [ 71%] overview
reading sources... [ 78%] qa
reading sources... [ 85%] sequences
reading sources... [ 92%] tour
reading sources... [100%] tss
/«PKGBUILDDIR»/doc/features.rst:190: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/features.rst:212: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/features.rst:239: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/genomic.rst:176: ERROR: Unknown interpreted text role "method".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... htseq-qa.1 { } htseq-count.1 { }
build succeeded, 4 warnings.
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_auto_test
make[1]: Entering directory '/«PKGBUILDDIR»'
python2.7 setup.py test -vv
/usr/lib/python2.7/dist-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.5.4p3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running test
dh override_dh_auto_test --with python2,sphinxdoc
make[1]: Leaving directory '/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --with python2,sphinxdoc
dh_testroot -a
dh_prep -a
dh_auto_install -a
python setup.py install --force --root=/«PKGBUILDDIR»/debian/tmp --no-compile -O0 --install-layout=deb
/usr/lib/python2.7/dist-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.5.4p3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /«PKGBUILDDIR»/debian/tmp
creating /«PKGBUILDDIR»/debian/tmp/usr
creating /«PKGBUILDDIR»/debian/tmp/usr/lib
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_HTSeq_internal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/StepVector.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_version.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/qa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/count.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/_HTSeq.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_StepVector.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
running install_egg_info
running egg_info
creating HTSeq.egg-info
writing HTSeq.egg-info/PKG-INFO
writing top-level names to HTSeq.egg-info/top_level.txt
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'test'
warning: no previously-included files found matching 'todo.txt'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info
running install_scripts
creating /«PKGBUILDDIR»/debian/tmp/usr/bin
copying build/scripts-2.7/htseq-qa -> /«PKGBUILDDIR»/debian/tmp/usr/bin
copying build/scripts-2.7/htseq-count -> /«PKGBUILDDIR»/debian/tmp/usr/bin
changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/htseq-qa to 775
changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/htseq-count to 775
dh_install -a
dh_installdocs -a
debian/rules override_dh_sphinxdoc-arch
make[1]: Entering directory '/«PKGBUILDDIR»'
# dh_sphinxdoc doesn't fail silently when there are no docs
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installchangelogs -k doc/history.rst
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installman -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-htseq: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-htseq: unused substitution variable ${python:Provides}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'python-htseq' in '../python-htseq_0.5.4p3-2+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../htseq_0.5.4p3-2+b1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build htseq-0.5.4p3
dpkg-source: info: using options from htseq-0.5.4p3/debian/source/options: --extend-diff-ignore=HTSeq\.egg-info/.* --extend-diff-ignore=HTSeq/StepVector\.py --extend-diff-ignore=src/StepVector_wrap\.cxx --extend-diff-ignore=src/_HTSeq\.c
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150910-1525
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
htseq_0.5.4p3-2+b1_armhf.changes:
─────────────────────────────────
Format: 1.8
Date: Thu, 05 Sep 2013 10:02:53 -0700
Source: htseq (0.5.4p3-2)
Binary: python-htseq python-htseq-doc
Binary-Only: yes
Architecture: armhf
Version: 0.5.4p3-2+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
python-htseq - high-throughput genome sequencing read analysis utilities
python-htseq-doc - documetation for HTSeq (high-throughput genome sequencing)
Changes:
htseq (0.5.4p3-2+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
3b43784a0b0c4ab5b26463c2df9a25a52e541110 163964 python-htseq_0.5.4p3-2+b1_armhf.deb
Checksums-Sha256:
92e30b171cbef18554c215b129fe366546e5d7fb276ca4321869ebabbd412bd6 163964 python-htseq_0.5.4p3-2+b1_armhf.deb
Files:
49f5b4965741fd5493818425f4898138 163964 python optional python-htseq_0.5.4p3-2+b1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
python-htseq_0.5.4p3-2+b1_armhf.deb
───────────────────────────────────
new debian package, version 2.0.
size 163964 bytes: control archive=1640 bytes.
933 bytes, 21 lines control
1748 bytes, 21 lines md5sums
162 bytes, 9 lines * postinst #!/bin/sh
261 bytes, 14 lines * prerm #!/bin/sh
Package: python-htseq
Source: htseq (0.5.4p3-2)
Version: 0.5.4p3-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 577
Depends: python (>= 2.7), python (<< 2.8), libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 5.2)
Section: python
Priority: optional
Homepage: http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
drwxr-xr-x root/root 0 2015-09-10 15:25 ./
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/bin/
-rwxr-xr-x root/root 75 2015-09-10 15:25 ./usr/bin/htseq-count
-rwxr-xr-x root/root 69 2015-09-10 15:25 ./usr/bin/htseq-qa
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/
-rw-r--r-- root/root 710 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/PKG-INFO
-rw-r--r-- root/root 403 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/SOURCES.txt
-rw-r--r-- root/root 1 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/top_level.txt
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq/
-rw-r--r-- root/root 25082 2015-09-10 15:22 ./usr/lib/python2.7/dist-packages/HTSeq/StepVector.py
-rw-r--r-- root/root 382952 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq/_HTSeq.so
-rw-r--r-- root/root 1407 2013-02-20 14:19 ./usr/lib/python2.7/dist-packages/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root 86852 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq/_StepVector.so
-rw-r--r-- root/root 32996 2013-04-18 14:16 ./usr/lib/python2.7/dist-packages/HTSeq/__init__.py
-rw-r--r-- root/root 24 2013-04-29 14:47 ./usr/lib/python2.7/dist-packages/HTSeq/_version.py
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root 0 2013-02-18 14:04 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/__init__.py
-rw-r--r-- root/root 11657 2013-04-29 14:50 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/count.py
-rw-r--r-- root/root 7729 2013-02-20 14:17 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/qa.py
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/share/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/share/doc/python-htseq/
-rw-r--r-- root/root 221 2015-09-10 15:22 ./usr/share/doc/python-htseq/changelog.Debian.armhf.gz
-rw-r--r-- root/root 322 2015-09-10 15:22 ./usr/share/doc/python-htseq/changelog.Debian.gz
-rw-r--r-- root/root 3927 2013-04-29 14:46 ./usr/share/doc/python-htseq/changelog.gz
-rw-r--r-- root/root 1227 2013-09-05 19:18 ./usr/share/doc/python-htseq/copyright
lrwxrwxrwx root/root 0 2015-09-10 15:25 ./usr/share/doc/python-htseq/history.rst.gz -> changelog.gz
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/share/man/
drwxr-xr-x root/root 0 2015-09-10 15:25 ./usr/share/man/man1/
-rw-r--r-- root/root 2755 2015-09-10 15:25 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1998 2015-09-10 15:25 ./usr/share/man/man1/htseq-qa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 11940
Build-Time: 209
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 428
Job: htseq_0.5.4p3-2
Machine Architecture: armhf
Package: htseq
Package-Time: 702
Source-Version: 0.5.4p3-2
Space: 11940
Status: successful
Version: 0.5.4p3-2+b1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150910-1525
Build needed 00:11:42, 11940k disc space