htseq →
0.11.3-1 →
armhf → 2020-03-09 05:47:02
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| htseq 0.11.3-1 (armhf) Mon, 09 Mar 2020 05:08:06 +0000 |
+==============================================================================+
Package: htseq
Version: 0.11.3-1
Source Version: 0.11.3-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d22e90ae-b0ab-488d-ae69-ad0de064a80c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 28s (885 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 626 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main htseq 0.11.3-1 (dsc) [2145 B]
Get:2 http://172.17.0.1/private bullseye-staging/main htseq 0.11.3-1 (tar) [613 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main htseq 0.11.3-1 (diff) [10.8 kB]
Fetched 626 kB in 0s (5188 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-yNdCQN/htseq-0.11.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-yNdCQN' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-SCRh95/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-SCRh95/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-SCRh95/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2676 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12215 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-SCRh95/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Sources [545 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ Packages [629 B]
Fetched 2507 B in 1s (3333 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
gcc-10-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgfortran5
libglib2.0-0 libgssapi-krb5-2 libhts3 libicu63 libjs-jquery libjs-jquery-ui
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libmagic-mgc
libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-chardet
python3-cycler python3-dateutil python3-debian python3-dev python3-distutils
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-numpy python3-pkg-resources python3-pyparsing python3-pysam
python3-setuptools python3-six python3.7 python3.7-dev python3.7-minimal
python3.8 python3.8-dev python3.8-minimal sensible-utils swig swig4.0
ttf-bitstream-vera zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff krb5-doc krb5-user libjs-jquery-ui-docs libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-cycler-doc
dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
gfortran python-numpy-doc python3-pytest python3-numpy-dbg
python-pyparsing-doc python-setuptools-doc python3.7-venv python3.7-doc
binfmt-support python3.8-venv python3.8-doc swig-doc swig-examples
swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl python3-apt python3-pil python3-tk
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
gcc-10-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgfortran5
libglib2.0-0 libgssapi-krb5-2 libhts3 libicu63 libjs-jquery libjs-jquery-ui
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libmagic-mgc
libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-chardet
python3-cycler python3-dateutil python3-debian python3-dev python3-distutils
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-numpy python3-pkg-resources python3-pyparsing python3-pysam
python3-setuptools python3-six python3.7 python3.7-dev python3.7-minimal
python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-htseq-dummy
sensible-utils swig swig4.0 ttf-bitstream-vera zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 107 newly installed, 0 to remove and 28 not upgraded.
Need to get 145 MB of archives.
After this operation, 357 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SCRh95/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200222-1+rpi1 [196 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200222-1+rpi1 [36.1 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-2 [84.7 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1+b1 [1525 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1+b1 [351 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-2 [104 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.5-1 [1140 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.4.2-2 [200 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-3 [49.0 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200222-1+rpi1 [229 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1+b1 [1256 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1+b1 [40.2 MB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.1.2-2 [4139 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1+b1 [518 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-4 [80.8 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3-debian all 0.1.36 [73.8 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-3 [245 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-1 [109 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.1.2-2 [5303 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-1 [2363 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
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Unpacking swig4.0 (4.0.1-5) ...
Selecting previously unselected package swig.
Preparing to unpack .../86-swig_4.0.1-5_all.deb ...
Unpacking swig (4.0.1-5) ...
Selecting previously unselected package sbuild-build-depends-htseq-dummy.
Preparing to unpack .../87-sbuild-build-depends-htseq-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up libpython3.8-minimal:armhf (3.8.2-1) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.67-2) ...
Setting up libglib2.0-0:armhf (2.62.5-1) ...
No schema files found: doing nothing.
Setting up fonts-lyx (2.3.4.2-2) ...
Setting up libdebhelper-perl (12.9) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up libdeflate0 (1.5-3) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up gcc-10-base:armhf (10-20200222-1+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up python3.8-minimal (3.8.2-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libjs-jquery (3.3.1~dfsg-3) ...
Setting up swig4.0 (4.0.1-5) ...
Setting up libpython3.8-stdlib:armhf (3.8.2-1) ...
Setting up python3.8 (3.8.2-1) ...
Setting up python-matplotlib-data (3.1.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libpython3.7-stdlib:armhf (3.7.6-1+b1) ...
Setting up swig (4.0.1-5) ...
Setting up libpython3.7:armhf (3.7.6-1+b1) ...
Setting up libtool (2.4.6-14) ...
Setting up libpython3.7-dev:armhf (3.7.6-1+b1) ...
Setting up m4 (1.4.18-4) ...
Setting up libgcc-s1:armhf (10-20200222-1+rpi1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up libpython3.8:armhf (3.8.2-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libgfortran5:armhf (10-20200222-1+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.6-1+b1) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-3) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.6-1+b1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.14.0-2) ...
Setting up python3-pyparsing (2.4.6-1) ...
Setting up libpython3.8-dev:armhf (3.8.2-1) ...
Setting up libpython3-all-dev:armhf (3.7.5-3) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up python3.8-dev (3.8.2-1) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20191017) ...
Setting up libhts3:armhf (1.10.2-3) ...
Setting up python3-pysam (0.15.4+ds-1) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.5-3) ...
Setting up python3-chardet (3.0.4-4) ...
Setting up python3-debian (0.1.36) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-kiwisolver (1.0.1-3) ...
Setting up python3-numpy (1:1.17.4-5+b1) ...
Setting up python3-all-dev (3.7.5-3) ...
Setting up python3-matplotlib (3.1.2-2) ...
Setting up debhelper (12.9) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.29-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-3+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-10+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3+rpi1 binutils-arm-linux-gnueabihf_2.34-3+rpi1 binutils-common_2.34-3+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fonts-lyx_2.3.4.2-2 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200222-1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-2 gnupg-l10n_2.2.19-2 gnupg-utils_2.2.19-2 gpg_2.2.19-2 gpg-agent_2.2.19-2 gpg-wks-client_2.2.19-2 gpg-wks-server_2.2.19-2 gpgconf_2.2.19-2 gpgsm_2.2.19-2 gpgv_2.2.19-2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4+b1 libarchive-zip-perl_1.67-2 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10+rpi1 libc-dev-bin_2.29-10+rpi1 libc6_2.29-10+rpi1 libc6-dev_2.29-10+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.34-3+rpi1 libctf0_2.34-3+rpi1 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc-s1_10-20200222-1+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200222-1+rpi1 libglib2.0-0_2.62.5-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libk5crypto3_1.17-6+b1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 libldap-2.4-2_2.4.49+dfsg-1+rpi1 libldap-common_2.4.49+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpsl5_0.21.0-1 libpython3-all-dev_3.7.5-3 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1+b1 libpython3.7-dev_3.7.6-1+b1 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libpython3.8_3.8.2-1 libpython3.8-dev_3.8.2-1 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline7_7.0-5 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-3 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-14 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.10+dfsg-4 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-matplotlib-data_3.1.2-2 python3_3.7.5-3 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-chardet_3.0.4-4 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3 python3-debian_0.1.36 python3-dev_3.7.5-3 python3-distutils_3.8.2-2 python3-kiwisolver_1.0.1-3 python3-lib2to3_3.8.2-2 python3-matplotlib_3.1.2-2 python3-minimal_3.7.5-3 python3-numpy_1:1.17.4-5+b1 python3-pkg-resources_44.0.0-1 python3-pyparsing_2.4.6-1 python3-pysam_0.15.4+ds-1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3.7_3.7.6-1+b1 python3.7-dev_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Mar 4 06:47:07 2020 UTC
gpgv: using RSA key 4D055C31E4812045F9010D75990D38367334D770
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_0.11.3-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_0.11.3.orig.tar.gz
dpkg-source: info: unpacking htseq_0.11.3-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d22e90ae-b0ab-488d-ae69-ad0de064a80c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 0.11.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean
symlinking folders for python3
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
symlinking folders for python3
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
symlinking folders for python3
running config
I: pybuild base:217: python3.7 setup.py config
symlinking folders for python3
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py build
symlinking folders for python3
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/_HTSeq.c -o build/temp.linux-armhf-3.8/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.8/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.8
copying and adjusting scripts/htseq-qa -> build/scripts-3.8
copying and adjusting scripts/htseq-count -> build/scripts-3.8
changing mode of build/scripts-3.8/htseq-qa from 644 to 755
changing mode of build/scripts-3.8/htseq-count from 644 to 755
I: pybuild base:217: /usr/bin/python3 setup.py build
symlinking folders for python3
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/_HTSeq.c -o build/temp.linux-armhf-3.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.7/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting scripts/htseq-qa -> build/scripts-3.7
copying and adjusting scripts/htseq-count -> build/scripts-3.7
changing mode of build/scripts-3.7/htseq-qa from 644 to 755
changing mode of build/scripts-3.7/htseq-count from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build; python3.8 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build; python3.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
symlinking folders for python3
running install
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/StepVector.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_version.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/qa.py to qa.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/count.py to count.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/StepVector.py to StepVector.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_version.py to _version.cpython-38.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.md'
warning: no previously-included files found matching 'todo.txt'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'test'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq-0.11.3.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.8/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.8/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
symlinking folders for python3
running install
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/StepVector.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_version.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/qa.py to qa.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/count.py to count.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/StepVector.py to StepVector.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_version.py to _version.cpython-37.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.md'
warning: no previously-included files found matching 'todo.txt'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'test'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq-0.11.3.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.7/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.7/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.11.3-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.11.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../htseq_0.11.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-09T05:46:55Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_0.11.3-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Tue, 03 Mar 2020 21:27:57 -0800
Source: htseq
Binary: python3-htseq python3-htseq-dbgsym
Architecture: armhf
Version: 0.11.3-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Diane Trout <diane@ghic.org>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (0.11.3-1) unstable; urgency=medium
.
* New upstream release
* Update Standards-Version to 4.5.0. No changes needed.
* Create working superficial autopkgtest.
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Checksums-Sha256:
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Files:
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| Package contents |
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python3-htseq-dbgsym_0.11.3-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 2197312 bytes: control archive=756 bytes.
512 bytes, 12 lines control
517 bytes, 5 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq
Version: 0.11.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2370
Depends: python3-htseq (= 0.11.3-1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 4b75531716857e6bcb30df1afaeaef797887fe88 54698b53bff4169f71bfad28f097843a8267f4c2 83005da5acdebd69d6a976ccd73e449a5eab27d5 ab09f7d4c35a5560d637cf08345163690c773d9b
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drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 174980 2020-03-04 05:27 ./usr/lib/debug/.build-id/4b/75531716857e6bcb30df1afaeaef797887fe88.debug
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.build-id/54/
-rw-r--r-- root/root 1096908 2020-03-04 05:27 ./usr/lib/debug/.build-id/54/698b53bff4169f71bfad28f097843a8267f4c2.debug
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drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root 897320 2020-03-04 05:27 ./usr/lib/debug/.build-id/ab/09f7d4c35a5560d637cf08345163690c773d9b.debug
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 66440 2020-03-04 05:27 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-htseq.debug
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-03-04 05:27 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_0.11.3-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 365396 bytes: control archive=1868 bytes.
1072 bytes, 25 lines control
1851 bytes, 21 lines md5sums
252 bytes, 12 lines * postinst #!/bin/sh
401 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq
Version: 0.11.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1507
Depends: python3 (<< 3.9), python3 (>= 3.7~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5)
Breaks: python-htseq (<= 0.9.1)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
drwxr-xr-x root/root 0 2020-03-04 05:27 ./
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/bin/
-rwxr-xr-x root/root 75 2020-03-04 05:27 ./usr/bin/htseq-count
-rwxr-xr-x root/root 69 2020-03-04 05:27 ./usr/bin/htseq-qa
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq-0.11.3.egg-info/
-rw-r--r-- root/root 1006 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq-0.11.3.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq-0.11.3.egg-info/dependency_links.txt
-rw-r--r-- root/root 28 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq-0.11.3.egg-info/requires.txt
-rw-r--r-- root/root 6 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq-0.11.3.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/
-rw-r--r-- root/root 28266 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/StepVector.py
-rw-r--r-- root/root 620948 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 596476 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 1416 2020-03-01 08:17 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root 90508 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 90508 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 44861 2020-03-01 08:17 ./usr/lib/python3/dist-packages/HTSeq/__init__.py
-rw-r--r-- root/root 22 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/_version.py
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/lib/python3/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root 0 2020-03-01 08:17 ./usr/lib/python3/dist-packages/HTSeq/scripts/__init__.py
-rw-r--r-- root/root 20856 2020-03-01 08:17 ./usr/lib/python3/dist-packages/HTSeq/scripts/count.py
-rw-r--r-- root/root 8342 2020-03-01 08:17 ./usr/lib/python3/dist-packages/HTSeq/scripts/qa.py
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/doc/python3-htseq/
-rw-r--r-- root/root 1452 2020-03-04 05:27 ./usr/share/doc/python3-htseq/changelog.Debian.gz
-rw-r--r-- root/root 959 2020-03-04 05:26 ./usr/share/doc/python3-htseq/copyright
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/man/
drwxr-xr-x root/root 0 2020-03-04 05:27 ./usr/share/man/man1/
-rw-r--r-- root/root 5662 2020-03-04 05:27 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1994 2020-03-04 05:27 ./usr/share/man/man1/htseq-qa.1.gz
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| Post Build |
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| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 34888
Build-Time: 576
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1695
Job: htseq_0.11.3-1
Machine Architecture: armhf
Package: htseq
Package-Time: 2329
Source-Version: 0.11.3-1
Space: 34888
Status: successful
Version: 0.11.3-1
--------------------------------------------------------------------------------
Finished at 2020-03-09T05:46:55Z
Build needed 00:38:49, 34888k disc space