htseq →
0.11.2-1 →
armhf → 2019-01-17 05:31:06
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| htseq 0.11.2-1 (armhf) Thu, 17 Jan 2019 04:50:18 +0000 |
+==============================================================================+
Package: htseq
Version: 0.11.2-1
Source Version: 0.11.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-1d10b5b6-2aba-4631-b366-691fbe2e7a3d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.2 MB]
Fetched 24.6 MB in 27s (913 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 624 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main htseq 0.11.2-1 (dsc) [2294 B]
Get:2 http://172.17.0.1/private buster-staging/main htseq 0.11.2-1 (tar) [611 kB]
Get:3 http://172.17.0.1/private buster-staging/main htseq 0.11.2-1 (diff) [10.6 kB]
Fetched 624 kB in 0s (8268 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-l733Kw/htseq-0.11.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-l733Kw' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6ShrsT/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6ShrsT/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6ShrsT/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3022 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 26 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14069 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), python-debian, python-setuptools, python-all-dev, python-numpy, python-matplotlib, python-pysam, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython, cython3
Filtered Build-Depends: debhelper (>= 12~), python-debian, python-setuptools, python-all-dev, python-numpy, python-matplotlib, python-pysam, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-6ShrsT/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Sources [562 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ Packages [641 B]
Fetched 2536 B in 1s (3266 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-8 cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
g++-8 gcc-8 gcc-8-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan5 libatomic1 libblas3 libbsd0 libcc1-0 libcroco3
libcurl3-gnutls libelf1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libgcc-8-dev libgcc1 libgfortran5 libglib2.0-0 libgomp1 libhts2
libicu63 libjs-jquery libjs-jquery-ui liblapack3 libmagic-mgc libmagic1
libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-all-dev libpython-dev
libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib librtmp1 libsigsegv2 libssh2-1
libstdc++-8-dev libstdc++6 libtool libubsan1 libuchardet0 libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev
python-backports.functools-lru-cache python-chardet python-cycler
python-dateutil python-debian python-dev python-kiwisolver python-matplotlib
python-matplotlib-data python-matplotlib2-data python-minimal python-numpy
python-pkg-resources python-pyparsing python-pysam python-setuptools
python-six python-subprocess32 python-tz python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-all
python3-all-dev python3-chardet python3-cycler python3-dateutil
python3-debian python3-dev python3-distutils python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-numpy
python3-pkg-resources python3-pyparsing python3-pysam python3-setuptools
python3-six python3.7 python3.7-dev python3.7-minimal swig swig3.0
ttf-bitstream-vera
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-8-locales cython-doc dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
libstdc++-8-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python-doc python-tk
python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython
librsvg2-common python-cairocffi python-configobj python-excelerator
python-gi python-gobject-2 python-matplotlib2-doc python-nose python-qt4
python-scipy python-sip python-tornado python-traits python-wxgtk3.0
texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran python-pytest
python-numpy-dbg python-numpy-doc python-pyparsing-doc python-setuptools-doc
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
ipython3 python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-nose python3-pyqt4 python3-scipy python3-sip
python3-tornado python3-pytest python3-numpy-dbg python3.7-venv
python3.7-doc swig-doc swig-examples swig3.0-examples swig3.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl python-apt python-pil python-tk python3-apt
python3-pil python3-tk
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbsd0 libcroco3 libcurl3-gnutls libelf1 libexpat1-dev
libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
libhts2 libicu63 libjs-jquery libjs-jquery-ui liblapack3 libmagic-mgc
libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-all-dev
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib librtmp1 libsigsegv2 libssh2-1
libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-backports.functools-lru-cache
python-chardet python-cycler python-dateutil python-debian python-dev
python-kiwisolver python-matplotlib python-matplotlib-data
python-matplotlib2-data python-minimal python-numpy python-pkg-resources
python-pyparsing python-pysam python-setuptools python-six
python-subprocess32 python-tz python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-chardet python3-cycler python3-dateutil python3-debian python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-numpy python3-pkg-resources python3-pyparsing
python3-pysam python3-setuptools python3-six python3.7 python3.7-dev
python3.7-minimal sbuild-build-depends-htseq-dummy swig swig3.0
ttf-bitstream-vera
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 120 newly installed, 0 to remove and 13 not upgraded.
Need to get 166 MB/166 MB of archives.
After this operation, 352 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6ShrsT/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-14+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-14+rpi1 [189 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-14+rpi1 [36.5 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-14+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-14+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-14+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-14+rpi1 [5475 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-14+rpi1 [30.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-14+rpi1 [5941 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-14+rpi1 [5856 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-14+rpi1 [3754 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-14+rpi1 [1565 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-14+rpi1 [324 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-1 [1231 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-5 [394 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-5 [1089 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-5 [1844 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-5 [299 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2-1 [582 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2-1 [1454 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.1-3 [36.5 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2-1 [1663 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2-1 [323 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.1-3 [20.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.1-3 [61.5 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.29.2-2 [1277 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.0-1 [12.6 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.2-3 [1076 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.3.2-1 [199 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-14+rpi1 [206 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.35.1-1 [70.8 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.62.0-1 [284 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libhts2 armhf 1.9-8 [254 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-5 [871 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-5 [30.8 MB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.2-1 [1253 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.2-1 [47.2 MB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.7.1-3 [20.1 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.1-3 [1068 B]
Get:92 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:93 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-5 [289 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:95 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:96 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:97 http://172.17.0.1/private buster-staging/main armhf python-backports.functools-lru-cache all 1.5-1 [6456 B]
Get:98 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 40.6.2-1 [181 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-2 [80.8 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf python-six all 1.12.0-1 [15.7 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf python-cycler all 0.10.0-1 [7448 B]
Get:102 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.1-1 [61.1 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python-debian all 0.1.33 [77.3 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python-kiwisolver armhf 1.0.1-2+b1 [54.0 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python-matplotlib2-data all 2.2.3-5 [4124 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python-tz all 2018.9-1 [33.5 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.16.0~rc2-2 [1867 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python-subprocess32 armhf 3.5.3-1 [28.9 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python-matplotlib armhf 2.2.3-5 [5005 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 3.0.2-2 [4138 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf python-pysam armhf 0.15.1+ds-1+rpi1 [1416 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 40.6.2-1 [380 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.7.1-3 [1064 B]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.2-1 [510 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.7.1-3 [1264 B]
Get:118 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.7.1-3 [1068 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.6.2-1 [152 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-2 [80.6 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-cycler all 0.10.0-1 [7556 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python3-debian all 0.1.33 [77.4 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-kiwisolver armhf 1.0.1-2+b1 [53.3 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.16.0~rc2-2 [1874 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-matplotlib armhf 3.0.2-2 [5282 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-pysam armhf 0.15.1+ds-1+rpi1 [1440 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.6.2-1 [303 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-1.2 [1225 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf swig armhf 3.0.12-1.2 [310 kB]
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Setting up gcc-8 (8.2.0-14+rpi1) ...
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Setting up libpython3-all-dev:armhf (3.7.1-3) ...
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Setting up python-pyparsing (2.2.0+dfsg1-2) ...
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Setting up python-backports.functools-lru-cache (1.5-1) ...
Setting up python3-numpy (1:1.16.0~rc2-2) ...
Setting up python-dev (2.7.15-3) ...
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Setting up cython (0.29.2-2) ...
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Setting up python3-all-dev (3.7.1-3) ...
Setting up python-matplotlib (2.2.3-5) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Setting up debhelper (12) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-14+rpi1 gcc-8_8.2.0-14+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-14+rpi1 cython_0.29.2-2 cython3_0.29.2-2 dash_0.5.10.2-4 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_12 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fonts-lyx_2.3.2-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-14+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1 gcc-8_8.2.0-14+rpi1 gcc-8-base_8.2.0-14+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.1-3 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56+nmu1 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.2-1 libacl1_2.2.52-3 libapparmor1_2.13.2-3 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14+rpi1 libassuan0_2.5.2-1 libatomic1_8.2.0-14+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2+b1 libbinutils_2.31.1-11+rpi1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcap-ng0_0.7.9-1+b1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libcurl3-gnutls_7.62.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.246 libdevmapper1.02.1_2:1.02.155-1 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.175-2 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libfreetype6_2.9.1-3 libgcc-8-dev_8.2.0-14+rpi1 libgcc1_1:8.2.0-14+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran5_8.2.0-14+rpi1 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2+rpi1 libgomp1_8.2.0-14+rpi1 libgpg-error-l10n_1.33-3 libgpg-error0_1.33-3 libgssapi-krb5-2_1.16.2-1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-8 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-1 libldap-common_2.4.47+dfsg-1 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libnss-systemd_240-2+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_240-2+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-5 libpython2.7-dev_2.7.15-5 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-all-dev_3.7.1-3 libpython3-dev_3.7.1-3 libpython3-stdlib_3.7.1-3 libpython3.7_3.7.2-1 libpython3.7-dev_3.7.2-1 libpython3.7-minimal_3.7.2-1 libpython3.7-stdlib_3.7.2-1 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3+b1 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 libsystemd0_240-2+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-14+rpi1 libuchardet0_0.0.6-3 libudev1_240-2+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-1 mawk_1.3.3-17 mime-support_3.61 mount_2.33.1-0.1 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-backports.functools-lru-cache_1.5-1 python-chardet_3.0.4-2 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-debian_0.1.33 python-dev_2.7.15-3 python-kiwisolver_1.0.1-2+b1 python-matplotlib_2.2.3-5 python-matplotlib-data_3.0.2-2 python-matplotlib2-data_2.2.3-5 python-minimal_2.7.15-3 python-numpy_1:1.16.0~rc2-2 python-pkg-resources_40.6.2-1 python-pyparsing_2.2.0+dfsg1-2 python-pysam_0.15.1+ds-1+rpi1 python-setuptools_40.6.2-1 python-six_1.12.0-1 python-subprocess32_3.5.3-1 python-tz_2018.9-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-3 python3-all_3.7.1-3 python3-all-dev_3.7.1-3 python3-chardet_3.0.4-2 python3-cycler_0.10.0-1 python3-dateutil_2.6.1-1 python3-debian_0.1.33 python3-dev_3.7.1-3 python3-distutils_3.7.1-1 python3-kiwisolver_1.0.1-2+b1 python3-lib2to3_3.7.1-1 python3-matplotlib_3.0.2-2 python3-minimal_3.7.1-3 python3-numpy_1:1.16.0~rc2-2 python3-pkg-resources_40.6.2-1 python3-pyparsing_2.2.0+dfsg1-2 python3-pysam_0.15.1+ds-1+rpi1 python3-setuptools_40.6.2-1 python3-six_1.12.0-1 python3.7_3.7.2-1 python3.7-dev_3.7.2-1 python3.7-minimal_3.7.2-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-1.2 swig3.0_3.0.12-1.2 systemd_240-2+rpi1 systemd-sysv_240-2+rpi1 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2018i-1 udev_240-2+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jan 11 22:40:36 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_0.11.2-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_0.11.2.orig.tar.gz
dpkg-source: info: unpacking htseq_0.11.2-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-1d10b5b6-2aba-4631-b366-691fbe2e7a3d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 0.11.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean
symlinking folders for python2
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
symlinking folders for python3
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python2.7 setup.py config
symlinking folders for python2
running config
I: pybuild base:217: python3.7 setup.py config
symlinking folders for python3
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python setup.py build
symlinking folders for python2
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.2
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/python2/src/HTSeq/_HTSeq.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
SWIGging
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/src
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-armhf-2.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-7yWIbs/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-2.7/src/StepVector_wrap.o -w
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-7yWIbs/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/htseq-qa -> build/scripts-2.7
copying and adjusting scripts/htseq-count -> build/scripts-2.7
changing mode of build/scripts-2.7/htseq-qa from 664 to 775
changing mode of build/scripts-2.7/htseq-count from 664 to 775
I: pybuild base:217: /usr/bin/python3 setup.py build
symlinking folders for python3
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.2
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/src
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/_HTSeq.c -o build/temp.linux-armhf-3.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.7/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting scripts/htseq-qa -> build/scripts-3.7
copying and adjusting scripts/htseq-count -> build/scripts-3.7
changing mode of build/scripts-3.7/htseq-qa from 664 to 775
changing mode of build/scripts-3.7/htseq-count from 664 to 775
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build; python3.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-htseq
symlinking folders for python2
running install
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.2
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/python2/src/HTSeq/_HTSeq.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
SWIGging
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-armhf-2.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-7yWIbs/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-2.7/src/StepVector_wrap.o -w
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-7yWIbs/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-htseq
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/qa.py to qa.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/count.py to count.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/StepVector.py to StepVector.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_version.py to _version.pyc
running install_egg_info
running egg_info
writing requirements to HTSeq.egg-info/requires.txt
writing HTSeq.egg-info/PKG-INFO
writing top-level names to HTSeq.egg-info/top_level.txt
writing dependency_links to HTSeq.egg-info/dependency_links.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.md'
warning: no previously-included files found matching 'todo.txt'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'test'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq-0.11.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python-htseq/usr/bin
copying build/scripts-2.7/htseq-qa -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/bin
copying build/scripts-2.7/htseq-count -> /<<PKGBUILDDIR>>/debian/python-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python-htseq/usr/bin/htseq-qa to 775
changing mode of /<<PKGBUILDDIR>>/debian/python-htseq/usr/bin/htseq-count to 775
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
symlinking folders for python3
running install
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.2
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/_HTSeq.c -o build/temp.linux-armhf-3.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/StepVector.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_version.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/qa.py to qa.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/count.py to count.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/StepVector.py to StepVector.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_version.py to _version.cpython-37.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.md'
warning: no previously-included files found matching 'todo.txt'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'test'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq-0.11.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.7/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.7/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 775
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
# binaries should be only in python3 package
rm -rf debian/python-htseq/usr/bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-htseq' in '../python-htseq_0.11.2-1_armhf.deb'.
dpkg-deb: building package 'python-htseq-dbgsym' in '../python-htseq-dbgsym_0.11.2-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.11.2-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.11.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../htseq_0.11.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-01-17T05:30:57Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_0.11.2-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Fri, 11 Jan 2019 23:31:53 +0100
Source: htseq
Binary: python-htseq python3-htseq
Architecture: armhf
Version: 0.11.2-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python-htseq - Python high-throughput genome sequencing read analysis utilities
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (0.11.2-1) unstable; urgency=medium
.
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* Secure URI in copyright format
* Drop ancient X-Python-Version field
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Files:
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120e2d45ef0b07b572c333e69be961a6 769420 debug optional python-htseq-dbgsym_0.11.2-1_armhf.deb
2d2cd39dc8bc26aed848d6e12ea14449 198300 python optional python-htseq_0.11.2-1_armhf.deb
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03443a170523c73c172c55539dfb000e 215132 python optional python3-htseq_0.11.2-1_armhf.deb
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| Package contents |
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python-htseq-dbgsym_0.11.2-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 769420 bytes: control archive=652 bytes.
426 bytes, 12 lines control
304 bytes, 3 lines md5sums
Package: python-htseq-dbgsym
Source: htseq
Version: 0.11.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 855
Depends: python-htseq (= 0.11.2-1)
Section: debug
Priority: optional
Description: debug symbols for python-htseq
Build-Ids: 8c33a9f9bb2c37b77af42eeab02f980e6f21afde d3c2abedab9cfc6a902e8c33560c909496d907fa
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lrwxrwxrwx root/root 0 2019-01-11 22:31 ./usr/share/doc/python-htseq-dbgsym -> python-htseq
python-htseq_0.11.2-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 198300 bytes: control archive=1560 bytes.
1021 bytes, 23 lines control
1342 bytes, 15 lines md5sums
162 bytes, 9 lines * postinst #!/bin/sh
263 bytes, 14 lines * prerm #!/bin/sh
Package: python-htseq
Source: htseq
Version: 0.11.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 739
Depends: python (<< 2.8), python (>= 2.7), python-numpy, python-pysam, python:any (>= 2.6.6-7~), libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5)
Section: python
Priority: optional
Homepage: http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 2 module.
drwxr-xr-x root/root 0 2019-01-11 22:31 ./
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-rw-r--r-- root/root 8354 2019-01-08 02:36 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/qa.py
drwxr-xr-x root/root 0 2019-01-11 22:31 ./usr/share/
drwxr-xr-x root/root 0 2019-01-11 22:31 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-01-11 22:31 ./usr/share/doc/python-htseq/
-rw-r--r-- root/root 1288 2019-01-11 22:31 ./usr/share/doc/python-htseq/changelog.Debian.gz
-rw-r--r-- root/root 959 2019-01-11 22:31 ./usr/share/doc/python-htseq/copyright
python3-htseq-dbgsym_0.11.2-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 903680 bytes: control archive=648 bytes.
429 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq
Version: 0.11.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 992
Depends: python3-htseq (= 0.11.2-1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 1d9ec55db6ab7f3ae1f07e6995154a1b1472346e f4cfadc4631481f57189dc236db5956fdb7e9c18
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lrwxrwxrwx root/root 0 2019-01-11 22:31 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_0.11.2-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 215132 bytes: control archive=1816 bytes.
1070 bytes, 25 lines control
1624 bytes, 19 lines md5sums
252 bytes, 12 lines * postinst #!/bin/sh
401 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq
Version: 0.11.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 766
Depends: python3 (<< 3.8), python3 (>= 3.7~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5)
Breaks: python-htseq (<= 0.9.1)
Provides: python-htseq
Section: python
Priority: optional
Homepage: http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
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-rw-r--r-- root/root 5662 2019-01-11 22:31 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1994 2019-01-11 22:31 ./usr/share/man/man1/htseq-qa.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 27012
Build-Time: 1064
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1326
Job: htseq_0.11.2-1
Machine Architecture: armhf
Package: htseq
Package-Time: 2439
Source-Version: 0.11.2-1
Space: 27012
Status: successful
Version: 0.11.2-1
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Finished at 2019-01-17T05:30:57Z
Build needed 00:40:39, 27012k disc space