Build log for hhsuite (3.3.0+ds-4) on armhf

hhsuite → 3.3.0+ds-4 → armhf → 2020-10-11 07:03:06

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd

+==============================================================================+
| hhsuite 3.3.0+ds-4 (armhf)                   Sun, 11 Oct 2020 06:33:55 +0000 |
+==============================================================================+

Package: hhsuite
Version: 3.3.0+ds-4
Source Version: 3.3.0+ds-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-a8fe181f-6050-4810-b2fd-b88a2c3c63f1' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 31s (799 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/hhsuite.git
Please use:
git clone https://salsa.debian.org/med-team/hhsuite.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4794 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main hhsuite 3.3.0+ds-4 (dsc) [2139 B]
Get:2 http://172.17.0.1/private bullseye-staging/main hhsuite 3.3.0+ds-4 (tar) [4775 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main hhsuite 3.3.0+ds-4 (diff) [16.4 kB]
Fetched 4794 kB in 2s (2388 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/hhsuite-HmeOWn/hhsuite-3.3.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/hhsuite-HmeOWn' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-mjaN1x/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-mjaN1x/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-mjaN1x/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2846 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12495 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), libsimde-dev (>= 0.6.0-2), cmake, imagemagick, help2man
Filtered Build-Depends: debhelper-compat (= 13), libsimde-dev (>= 0.6.0-2), cmake, imagemagick, help2man
dpkg-deb: building package 'sbuild-build-depends-hhsuite-dummy' in '/<<BUILDDIR>>/resolver-mjaN1x/apt_archive/sbuild-build-depends-hhsuite-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-hhsuite-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Sources [528 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ Packages [608 B]
Fetched 2469 B in 1s (3173 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install hhsuite build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base help2man
  hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16
  intltool-debian libaom0 libarchive-zip-perl libarchive13 libbrotli1 libbsd0
  libcroco3 libcurl4 libdav1d4 libde265-0 libdebhelper-perl libelf1 libexpat1
  libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libglib2.0-0 libgssapi-krb5-2 libheif1 libicu67 libjbig0
  libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblcms2-2 liblqr-1-0 libltdl7 libmagic-mgc libmagic1
  libmagickcore-6.q16-6 libmagickwand-6.q16-6 libncurses6 libncursesw6
  libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libprocps8 libpsl5
  librhash0 librtmp1 libsigsegv2 libsimde-dev libssh2-1 libssl1.1
  libsub-override-perl libtiff5 libtinfo6 libtool libuchardet0 libuv1 libwebp6
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-192 libxau6 libxcb1
  libxdmcp6 libxext6 libxml2 m4 man-db po-debconf procps ucf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
  gettext-doc libasprintf-dev libgettextpo-dev groff imagemagick-doc autotrace
  cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz
  hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin
  transfig ufraw-batch xdg-utils lrzip libfftw3-bin libfftw3-dev krb5-doc
  krb5-user liblcms2-utils libmagickcore-6.q16-6-extra libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm
  ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales gsfonts libgpm2 publicsuffix libltdl-dev
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base help2man
  hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16
  intltool-debian libaom0 libarchive-zip-perl libarchive13 libbrotli1 libbsd0
  libcroco3 libcurl4 libdav1d4 libde265-0 libdebhelper-perl libelf1 libexpat1
  libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libglib2.0-0 libgssapi-krb5-2 libheif1 libicu67 libjbig0
  libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblcms2-2 liblqr-1-0 libltdl7 libmagic-mgc libmagic1
  libmagickcore-6.q16-6 libmagickwand-6.q16-6 libncurses6 libnghttp2-14
  libopenjp2-7 libpipeline1 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1
  libsigsegv2 libsimde-dev libssh2-1 libssl1.1 libsub-override-perl libtiff5
  libtool libuchardet0 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6
  libx11-data libx265-192 libxau6 libxcb1 libxdmcp6 libxext6 libxml2 m4 man-db
  po-debconf procps sbuild-build-depends-hhsuite-dummy ucf
The following packages will be upgraded:
  libncursesw6 libtinfo6
2 upgraded, 91 newly installed, 0 to remove and 36 not upgraded.
Need to get 37.0 MB/38.3 MB of archives.
After this operation, 138 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mjaN1x/apt_archive ./ sbuild-build-depends-hhsuite-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libfftw3-double3 armhf 3.3.8-2 [429 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libaom0 armhf 1.0.0.errata1-3 [793 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libdav1d4 armhf 0.7.1-3+rpi1 [207 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libde265-0 armhf 1.0.7-1+rpi1 [181 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libx265-192 armhf 3.4-2 [560 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libheif1 armhf 1.9.1-1 [158 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.0-2 [1173 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf liblqr-1-0 armhf 0.4.2-2.1 [23.1 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libopenjp2-7 armhf 2.3.1-1 [140 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf imagemagick-6-common all 8:6.9.11.24+dfsg-1 [208 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libmagickcore-6.q16-6 armhf 8:6.9.11.24+dfsg-1+b1 [1631 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libmagickwand-6.q16-6 armhf 8:6.9.11.24+dfsg-1+b1 [430 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.2+20200918-1 [327 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.2+20200918-1 [105 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.2-1+rpi1 [1725 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.39.0-1 [118 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.2-1+rpi1 [3130 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf imagemagick-6.q16 armhf 8:6.9.11.24+dfsg-1+b1 [380 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf imagemagick armhf 8:6.9.11.24+dfsg-1+b1 [163 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.6.0-3 [213 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 37.0 MB in 13s (2899 kB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12495 files and directories currently installed.)
Preparing to unpack .../00-libuchardet0_0.0.7-1_armhf.deb ...
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Setting up gettext (0.19.8.1-10) ...
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Setting up man-db (2.9.3-2) ...
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libmagickcore-6.q16-6:armhf (8:6.9.11.24+dfsg-1+b1) ...
Setting up cmake (3.18.2-1+rpi1) ...
Setting up libmagickwand-6.q16-6:armhf (8:6.9.11.24+dfsg-1+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up imagemagick-6.q16 (8:6.9.11.24+dfsg-1+b1) ...
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update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode
Setting up imagemagick (8:6.9.11.24+dfsg-1+b1) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-hhsuite-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.vacQjPfH/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep  2 13:39:48 2020 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./hhsuite_3.3.0+ds-4.dsc
dpkg-source: info: extracting hhsuite in /<<BUILDDIR>>/hhsuite-3.3.0+ds
dpkg-source: info: unpacking hhsuite_3.3.0+ds.orig.tar.xz
dpkg-source: info: unpacking hhsuite_3.3.0+ds-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying test_without_mpi
dpkg-source: info: applying perlscript_uselib
dpkg-source: info: applying perl_interpreter
dpkg-source: info: applying drop-fmemopen.h.patch
dpkg-source: info: applying python3
dpkg-source: info: applying ppc64el.patch
dpkg-source: info: applying exe_suffix

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a8fe181f-6050-4810-b2fd-b88a2c3c63f1
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package hhsuite
dpkg-buildpackage: info: source version 3.3.0+ds-4
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
dh_auto_clean
rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild
find . -name "*.rej" -delete
find . -name "*~" -delete
dh_clean
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   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
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make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0
	cd mybuild && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DNATIVE_ARCH=0 ..
-- The C compiler identification is GNU 10.2.0
-- The CXX compiler identification is GNU 10.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiler is GNU 
-- Looking for fmemopen
-- Looking for fmemopen - found
-- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) 
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) 
-- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) 
    Reason given by package: MPI component 'Fortran' was requested, but language Fortran is not enabled.  

-- xxd not found, using xxdi.pl instead
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Found OpenMP
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild
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   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
dh_auto_build --builddirectory mybuild
	cd mybuild && make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
/usr/bin/cmake -S/<<BUILDDIR>>/hhsuite-3.3.0+ds -B/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/CMakeFiles /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend
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make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/data /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/data /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/data/CMakeFiles/generated.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color=
Scanning dependencies of target generated
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build
Scanning dependencies of target ffindex
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
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make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cc  -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c
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/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c: In function 'ffindex_index_parse':
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cc  -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c
/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function 'ffindex_apply_by_entry':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
  172 |             fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
      |                                        ~~^                                 ~~~~~~~~~~~~~
      |                                          |                                      |
      |                                          long int                               size_t {aka unsigned int}
      |                                        %d
/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
  172 |             fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
      |                                             ~~^                                           ~~~~~~~~~~~~~
      |                                               |                                                |
      |                                               long int                                         size_t {aka unsigned int}
      |                                             %d
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[ 30%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cc  -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1
/usr/bin/cc -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order  libffindex.a 
/usr/bin/cc -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify  libffindex.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 34%] Linking C executable ffindex_unpack
[ 34%] Built target ffindex_order
make  -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color=
[ 34%] Built target ffindex_modify
make  -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/a3m_database_filter.dir/DependInfo.cmake --color=
/usr/bin/cc -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack  libffindex.a 
Scanning dependencies of target ffindex_from_fasta_with_split
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
Scanning dependencies of target a3m_database_filter
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 35%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cc  -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c
[ 36%] Building CXX object src/CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 36%] Built target ffindex_unpack
make  -f src/CMakeFiles/a3m_database_extract.dir/build.make src/CMakeFiles/a3m_database_extract.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/a3m_database_extract.dir/DependInfo.cmake --color=
Scanning dependencies of target a3m_database_extract
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f src/CMakeFiles/a3m_database_extract.dir/build.make src/CMakeFiles/a3m_database_extract.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 37%] Building CXX object src/CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp
[ 38%] Linking C executable ffindex_from_fasta_with_split
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1
/usr/bin/cc -std=c99 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split  libffindex.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 38%] Built target ffindex_from_fasta_with_split
make  -f src/CMakeFiles/a3m_database_reduce.dir/build.make src/CMakeFiles/a3m_database_reduce.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/a3m_database_reduce.dir/DependInfo.cmake --color=
Scanning dependencies of target a3m_database_reduce
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f src/CMakeFiles/a3m_database_reduce.dir/build.make src/CMakeFiles/a3m_database_reduce.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 39%] Building CXX object src/CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp
[ 40%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs/log.cc
[ 41%] Linking CXX executable a3m_database_extract
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o -o a3m_database_extract  ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 41%] Built target a3m_database_extract
make  -f src/CMakeFiles/a3m_extract.dir/build.make src/CMakeFiles/a3m_extract.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/a3m_extract.dir/DependInfo.cmake --color=
Scanning dependencies of target a3m_extract
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f src/CMakeFiles/a3m_extract.dir/build.make src/CMakeFiles/a3m_extract.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 42%] Building CXX object src/CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/a3m_extract.cpp
[ 43%] Linking CXX executable a3m_database_reduce
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce  ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 43%] Built target a3m_database_reduce
make  -f src/CMakeFiles/a3m_reduce.dir/build.make src/CMakeFiles/a3m_reduce.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/a3m_reduce.dir/DependInfo.cmake --color=
Scanning dependencies of target a3m_reduce
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make  -f src/CMakeFiles/a3m_reduce.dir/build.make src/CMakeFiles/a3m_reduce.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 44%] Building CXX object src/CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/a3m_reduce.cpp
[ 45%] Linking CXX executable a3m_database_filter
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -o a3m_database_filter  ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 45%] Built target a3m_database_filter
[ 46%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs/application.cc
[ 47%] Linking CXX executable a3m_extract
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o -o a3m_extract  ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 47%] Built target a3m_extract
[ 48%] Linking CXX executable a3m_reduce
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o -o a3m_reduce  ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[ 48%] Built target a3m_reduce
[ 49%] Linking CXX static library libCS_OBJECTS.a
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1
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/usr/bin/ranlib libCS_OBJECTS.a
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits.cpp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhdecl.cpp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhit.cpp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhmatrices.cpp
[ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhsearch.cpp
[ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalign.cpp
[ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhitlist.cpp
[ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhposteriordecoder.cpp
[ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhutil.cpp
In file included from /usr/include/c++/10/vector:72,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhit.h:14,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhitlist.h:16,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhitlist.cpp:9:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Hit&}; _Tp = Hit; _Alloc = std::allocator<Hit>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Hit>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhit.h:14,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhitlist.h:16,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhitlist.cpp:9:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void HitList::PrintMatrices(HMM*, std::stringstream&, bool, size_t, const float (*)[20])':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Hit*, std::vector<Hit> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.cpp
[ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalignment.cpp
[ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhforwardalgorithm.cpp
[ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.cpp
[ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp
[ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function 'int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: '%s' directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=]
 1797 |       sprintf(details, "The alingment %s does not contain any sequences.",
      |                                       ^~
In file included from /usr/include/stdio.h:867,
                 from /usr/include/c++/10/cstdio:42,
                 from /usr/include/c++/10/ext/string_conversions.h:43,
                 from /usr/include/c++/10/bits/basic_string.h:6535,
                 from /usr/include/c++/10/string:55,
                 from /usr/include/c++/10/bits/locale_classes.h:40,
                 from /usr/include/c++/10/bits/ios_base.h:41,
                 from /usr/include/c++/10/ios:42,
                 from /usr/include/c++/10/istream:38,
                 from /usr/include/c++/10/fstream:38,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalignment.h:6,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhalignment.cpp:8:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 47 and 4142 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhfullalignment.cpp
[ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp
[ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhposteriormatrix.cpp
[ 68%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbi.cpp
[ 69%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhbacktracemac.cpp
[ 70%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhmacalgorithm.cpp
[ 71%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.cpp
[ 72%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp
[ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhbackwardalgorithm.cpp
[ 74%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/ffindexdatabase.cpp
[ 75%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhdatabase.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
                 from /usr/include/c++/10/algorithm:62,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd/simd.h:9,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.h:23,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.h:8,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.h:17,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.cpp:8:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >; _Distance = int; _Tp = std::pair<double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<comparePair>]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
  223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd/simd.h:9,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.h:23,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.h:8,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.h:17,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.cpp:8:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<comparePair>]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
[ 76%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhalfalignment.cpp
[ 77%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp
In file included from /usr/include/c++/10/vector:72,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.h:11,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<double, int> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function '_ZN9Prefilter12prefilter_dbEP3HMMP4HashI3HitEiiiiiddiiiPA20_KfRSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaISH_EESK_._omp_fn.1':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhfunc.cpp
In file included from /usr/include/c++/10/vector:72,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.h:20,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.h:8,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmmsimd.h:5,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbirunner.h:4,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Hit&}; _Tp = Hit; _Alloc = std::allocator<Hit>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Hit>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.h:20,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.h:8,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmmsimd.h:5,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbirunner.h:4,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void ViterbiConsumerThread::align(int, int, float, char)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Hit*, std::vector<Hit> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd/simd.h:9,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/util.h:23,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhhmm.h:8,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.h:17,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhprefilter.cpp:8:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<comparePair>]':
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1662 |     __heap_select(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<comparePair>]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1945 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1937 |       std::__heap_select(__first, __middle, __last, __comp);
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<Hit> ViterbiRunner::alignment(Parameters&, HMMSimd*, std::vector<HHEntry*>, float, float*, const float (*)[20], const float (*)[20], const float (*)[20], int, const float (*)[4][11], const float (*)[11][4][11], const float (*)[11][8])':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Hit*, std::vector<Hit> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In member function 'void Prefilter::prefilter_db(HMM*, Hash<Hit>*, int, int, int, int, int, double, double, int, int, int, const float (*)[20], std::vector<std::pair<int, std::__cxx11::basic_string<char> > >&, std::vector<std::pair<int, std::__cxx11::basic_string<char> > >&)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1974 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1975 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1976 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
 1891 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'void ViterbiRunner::merge_thread_results(std::vector<Hit>&, std::vector<HHEntry*>&, std::map<std::__cxx11::basic_string<char>, std::vector<Viterbi::BacktraceResult> >&, std::vector<ViterbiConsumerThread*>&, int, float)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Hit*, std::vector<Hit> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 79%] Linking CXX static library libHH_OBJECTS.a
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1
/usr/bin/ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o
/usr/bin/ranlib libHH_OBJECTS.a
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/cstranslate.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/hhsuite-3.3.0+ds /<<BUILDDIR>>/hhsuite-3.3.0+ds/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src/CMakeFiles/hhalign_omp.dir/DependInfo.cmake --color=
Scanning dependencies of target hhsearch_omp
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -o CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp
[ 82%] Building CXX object src/CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -o CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp
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cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/c++ -DOPENMP -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/generated -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/ffindex/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simde -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/lib/simd -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src -I/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -o CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o -c /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function 'int main(int, const char**)':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: '.ffindex' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
   26 |         snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base);
      |                                                   ^~~~~~~~
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function 'int main(int, const char**)':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: '.ffindex' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
   26 |         snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base);
      |                                                   ^~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from /usr/include/c++/10/cstdio:42,
                 from /usr/include/c++/10/ext/string_conversions.h:43,
                 from /usr/include/c++/10/bits/basic_string.h:6535,
                 from /usr/include/c++/10/string:55,
                 from /usr/include/c++/10/bits/locale_classes.h:40,
                 from /usr/include/c++/10/bits/ios_base.h:41,
                 from /usr/include/c++/10/ios:42,
                 from /usr/include/c++/10/istream:38,
                 from /usr/include/c++/10/fstream:38,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits.h:11,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhsearch.h:34,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from /usr/include/c++/10/cstdio:42,
                 from /usr/include/c++/10/ext/string_conversions.h:43,
                 from /usr/include/c++/10/bits/basic_string.h:6535,
                 from /usr/include/c++/10/string:55,
                 from /usr/include/c++/10/bits/locale_classes.h:40,
                 from /usr/include/c++/10/bits/ios_base.h:41,
                 from /usr/include/c++/10/ios:42,
                 from /usr/include/c++/10/istream:38,
                 from /usr/include/c++/10/fstream:38,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits.h:11,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhsearch.h:34,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function 'int main(int, const char**)':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: '.ffindex' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
   26 |         snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base);
      |                                                   ^~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from /usr/include/c++/10/cstdio:42,
                 from /usr/include/c++/10/ext/string_conversions.h:43,
                 from /usr/include/c++/10/bits/basic_string.h:6535,
                 from /usr/include/c++/10/string:55,
                 from /usr/include/c++/10/bits/locale_classes.h:40,
                 from /usr/include/c++/10/bits/ios_base.h:41,
                 from /usr/include/c++/10/ios:42,
                 from /usr/include/c++/10/istream:38,
                 from /usr/include/c++/10/fstream:38,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits.h:11,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhsearch.h:34,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 84%] Linking CXX executable hhblits_omp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp.dir/link.txt --verbose=1
[ 85%] Linking CXX executable hhsearch_omp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o -o hhblits_omp  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o -o hhsearch_omp  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
[ 86%] Linking CXX executable hhalign_omp
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o -o hhalign_omp  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter.dir/hhfilter.cpp.o -o hhfilter  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch.dir/hhblits_app.cpp.o -o hhsearch  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
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/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function 'int main(int, const char**)':
/<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: '.ffindex' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
   24 |       snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base);
      |                                                 ^~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from /usr/include/c++/10/cstdio:42,
                 from /usr/include/c++/10/ext/string_conversions.h:43,
                 from /usr/include/c++/10/bits/basic_string.h:6535,
                 from /usr/include/c++/10/string:55,
                 from /usr/include/c++/10/bits/locale_classes.h:40,
                 from /usr/include/c++/10/bits/ios_base.h:41,
                 from /usr/include/c++/10/ios:42,
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                 from /usr/include/c++/10/fstream:38,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits.h:11,
                 from /<<BUILDDIR>>/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX executable hhblits_ca3m
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m  libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[100%] Built target hhblits_ca3m
[100%] Linking CXX executable cstranslate
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o -o cstranslate  libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a 
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
[100%] Built target cstranslate
make[3]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/CMakeFiles 0
make[2]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
cd /<<BUILDDIR>>/hhsuite-3.3.0+ds/data && PATH=$PATH:/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/src:/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild/lib/ffindex/src ./test.sh
- 06:54:42.946 INFO: Search results will be written to query.hhr

- 06:54:43.576 INFO: query.a3m is in A2M, A3M or FASTA format

- 06:54:50.241 INFO: Alternative alignment: 0

- 06:54:50.712 INFO: 1 alignments done

- 06:54:51.059 INFO: Realigning 1 HMM-HMM alignments using Maximum Accuracy algorithm

Query         sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3
Match_columns 431
No_of_seqs    49 out of 118
Neff          4.29223
Searched_HMMs 1
Date          Sun Oct 11 06:54:52 2020
Command       hhalign -i query.a3m -t query.a3m 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 sp|Q5VUD6|FA69B_HUMAN Protein  100.0  9E-168  9E-168 1246.9   0.0  431    1-431     1-431 (431)

query.a3m	0	32127	4412	0
query.a3m	0	32666	25	0
query.a3m	0	32666	993	0
Reading context library for pseudocounts from internal ...
Reading abstract state alphabet from internal ...
Processing entry: query.a3m
Adding cs-pseudocounts (admix=0.30) ...
- 06:55:12.239 INFO: Search results will be written to query.hhr

- 06:55:12.251 INFO: Searching 1 column state sequences.

- 06:55:12.872 INFO: query.a3m is in A2M, A3M or FASTA format

- 06:55:13.135 INFO: Iteration 1

- 06:55:19.351 INFO: Prefiltering database

- 06:55:25.554 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 1

- 06:55:25.582 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment)   : 1

- 06:55:25.583 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 1

- 06:55:25.583 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment

- 06:55:26.115 INFO: Alternative alignment: 0

- 06:55:26.585 INFO: 1 alignments done

- 06:55:26.586 INFO: Alternative alignment: 1

- 06:55:27.051 INFO: 1 alignments done

- 06:55:27.051 INFO: Alternative alignment: 2

- 06:55:27.051 INFO: Alternative alignment: 3

- 06:55:33.848 INFO: Premerge done

- 06:55:33.850 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm

- 06:55:34.360 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001

Query         sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3
Match_columns 431
No_of_seqs    59 out of 118
Neff          4.27431
Searched_HMMs 1
Date          Sun Oct 11 06:55:34 2020
Command       hhblits -i query.a3m -d single -blasttab blits_app_res -n 1 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 sp|Q5VUD6|FA69B_HUMAN Protein  100.0  1E-167  5E-169 1249.5   0.0  431    1-431     1-431 (431)
  2 sp|Q5VUD6|FA69B_HUMAN Protein    0.2     8.3    0.38   16.3   0.0   17   78-97    344-360 (431)

- 06:55:34.586 INFO: Searching 1 column state sequences.

- 06:55:35.108 INFO: Thread 0	query.a3m

- 06:55:35.241 INFO: query.a3m is in A2M, A3M or FASTA format

- 06:55:35.504 INFO: Iteration 1

- 06:55:46.585 INFO: Prefiltering database

- 06:55:57.727 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 1

- 06:55:57.754 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment)   : 1

- 06:55:57.754 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 1

- 06:55:57.754 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment

- 06:55:58.013 INFO: Alternative alignment: 0

- 06:55:58.469 INFO: 1 alignments done

- 06:55:58.470 INFO: Alternative alignment: 1

- 06:55:58.925 INFO: 1 alignments done

- 06:55:58.925 INFO: Alternative alignment: 2

- 06:55:58.925 INFO: Alternative alignment: 3

- 06:56:10.609 INFO: Premerge done

- 06:56:10.610 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm

- 06:56:11.006 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001

- 06:56:11.282 INFO: Search results will be written to query.hhr

- 06:56:11.910 INFO: query.a3m is in A2M, A3M or FASTA format

- 06:56:12.174 INFO: Searching 1 database HHMs without prefiltering

- 06:56:12.175 INFO: Iteration 1

- 06:56:17.955 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment

- 06:56:18.470 INFO: Alternative alignment: 0

- 06:56:18.925 INFO: 1 alignments done

- 06:56:18.925 INFO: Alternative alignment: 1

- 06:56:19.380 INFO: 1 alignments done

- 06:56:19.381 INFO: Alternative alignment: 2

- 06:56:19.381 INFO: Alternative alignment: 3

- 06:56:26.098 INFO: Premerge done

- 06:56:26.100 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm

- 06:56:26.601 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001

Query         sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3
Match_columns 431
No_of_seqs    49 out of 118
Neff          4.29223
Searched_HMMs 1
Date          Sun Oct 11 06:56:26 2020
Command       hhsearch -i query.a3m -d single -blasttab search_app_res 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 sp|Q5VUD6|FA69B_HUMAN Protein  100.0  5E-169  5E-169 1249.5   0.0  431    1-431     1-431 (431)
  2 sp|Q5VUD6|FA69B_HUMAN Protein    0.2    0.38    0.38   16.3   0.0   17   78-97    344-360 (431)

- 06:56:27.344 INFO: Thread 0	query.a3m

- 06:56:27.472 INFO: query.a3m is in A2M, A3M or FASTA format

- 06:56:27.738 INFO: Searching 1 database HHMs without prefiltering

- 06:56:27.739 INFO: Iteration 1

- 06:56:38.853 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment

- 06:56:39.121 INFO: Alternative alignment: 0

- 06:56:39.577 INFO: 1 alignments done

- 06:56:39.577 INFO: Alternative alignment: 1

- 06:56:40.032 INFO: 1 alignments done

- 06:56:40.032 INFO: Alternative alignment: 2

- 06:56:40.032 INFO: Alternative alignment: 3

- 06:56:51.809 INFO: Premerge done

- 06:56:51.810 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm

- 06:56:52.207 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001

make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
mkdir -p /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/hhsuite/usr/libexec/hhsuite/bin
dh_auto_install --builddirectory mybuild
	cd mybuild && make -j4 install DESTDIR=/<<BUILDDIR>>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
/usr/bin/cmake -S/<<BUILDDIR>>/hhsuite-3.3.0+ds -B/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl
-- Installing: /<<BUILDDIR>>/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl
make[2]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds/mybuild'
for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter ; do dh_install -phhsuite usr/bin/${prog} usr/bin/ ; done
dh_install -phhsuite usr/bin/cstranslate* usr/libexec/hhsuite/bin
dh_install -phhsuite usr/bin/ffindex_* usr/bin/
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   debian/rules override_dh_installman-arch
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/tmp/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/tmp/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/tmp/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/tmp/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/tmp/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/tmp/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1'
export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/tmp/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1'
dh_installman --arch
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   debian/rules override_dh_fixperms-arch
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
dh_fixperms
chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhblits_ca3m contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhsearch_omp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhalign_omp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhblits_omp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/a3m_reduce contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/libexec/hhsuite/bin/cstranslate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/a3m_database_reduce contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhconsensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhblits contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/a3m_extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhsearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/a3m_database_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhfilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/a3m_database_extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hhsuite/usr/bin/hhmake contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hhsuite/usr/bin/hhblits_ca3m debian/hhsuite/usr/bin/hhsearch_omp debian/hhsuite/usr/bin/hhalign_omp debian/hhsuite/usr/bin/hhblits_omp debian/hhsuite/usr/bin/ffindex_order debian/hhsuite/usr/bin/a3m_reduce debian/hhsuite/usr/bin/ffindex_apply debian/hhsuite/usr/libexec/hhsuite/bin/cstranslate debian/hhsuite/usr/bin/a3m_database_reduce debian/hhsuite/usr/bin/hhconsensus debian/hhsuite/usr/bin/hhblits debian/hhsuite/usr/bin/a3m_extract debian/hhsuite/usr/bin/hhsearch debian/hhsuite/usr/bin/ffindex_from_fasta debian/hhsuite/usr/bin/a3m_database_filter debian/hhsuite/usr/bin/ffindex_build debian/hhsuite/usr/bin/ffindex_modify debian/hhsuite/usr/bin/hhfilter debian/hhsuite/usr/bin/ffindex_unpack debian/hhsuite/usr/bin/hhalign debian/hhsuite/usr/bin/ffindex_get debian/hhsuite/usr/bin/a3m_database_extract debian/hhsuite/usr/bin/ffindex_reduce debian/hhsuite/usr/bin/ffindex_from_fasta_with_split debian/hhsuite/usr/bin/hhmake were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
   dh_installdeb -a
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.6.0-3), "
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.3.0+ds'
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-4_armhf.deb'.
dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-4_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../hhsuite_3.3.0+ds-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-10-11T07:02:38Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


hhsuite_3.3.0+ds-4_armhf.changes:
---------------------------------

Format: 1.8
Date: Wed, 02 Sep 2020 15:39:19 +0200
Source: hhsuite
Binary: hhsuite hhsuite-dbgsym
Architecture: armhf
Version: 3.3.0+ds-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 hhsuite    - sensitive protein sequence searching based on HMM-HMM alignment
Changes:
 hhsuite (3.3.0+ds-4) unstable; urgency=medium
 .
   * Team upload.
   * Fix tests on non-x86.
   * Include Built-Using: ${simde:Built-Using} to satisfy GPL requirements
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Checksums-Sha256:
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Files:
 c576a4ae319ead440818d5e11fea45e5 17549276 debug optional hhsuite-dbgsym_3.3.0+ds-4_armhf.deb
 66bed32fcea4429b52f15a29218729ee 6619 science optional hhsuite_3.3.0+ds-4_armhf.buildinfo
 35290f551a7507555286e1d5269dc1b9 10200860 science optional hhsuite_3.3.0+ds-4_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


hhsuite-dbgsym_3.3.0+ds-4_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 17549276 bytes: control archive=1752 bytes.
    1362 bytes,    12 lines      control              
    2737 bytes,    26 lines      md5sums              
 Package: hhsuite-dbgsym
 Source: hhsuite
 Version: 3.3.0+ds-4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 18352
 Depends: hhsuite (= 3.3.0+ds-4)
 Section: debug
 Priority: optional
 Description: debug symbols for hhsuite
 Build-Ids: 1360b624a9f438f7cd1ce754892ece674b00753c 178de1c8a80c2a2b092aac0d9e0d83724f29590c 1d1620b610e74fdb2308a15d4f69cbce24992127 1e0cb45bffa8714c210e4cf34efcd27fa79881c0 423271b3ce0fb237f0a72c344fac4bd778fb5f6e 4256134efa02546877c1817545c905894181002a 4c0b5eb9305abcec20204b4cfd2b469967ae8e43 54759160e7180c8bfe62cb9531612258c5591eeb 5ad8114db02a0978563bc281939c3aa6c2266d60 5f81b8b610006e530d74fac74ad67cdedd9d2a16 814ad610eba4c51ec729dc2d5de17beb46f7ea45 9e3d5cc1c367fe1f4be33f368d560814410ea09c a269602166d04e4a6680fa711c06ad652713602e a2e8463a844e7c316e7c023ce41ac2923418c9b5 aa1f8f551556b179ab9793c00e5fd0bffa616680 b31fa96c3e44f96a34b8d160b0423e8fc9a17fbc c112127c5881e4e4270a17dafd1988a298a8c19b cd26e0ad673856eca4c991f8266b032f505f6e6c cdc6834536d007116eed75ceed5d4271fac17779 db38250fa167dedd6b83c9b04af2ccbdd9cd2629 dce8fbcfe3ddbe8a6b8d10efc9f789eb64741bd8 ddbfb099b398bc18f1af12787dea69d99c8c9ee4 e6d02e93cfa4e1b73826ca0b87d10601d2089e26 e73660d5850eccfa4fd187f506e2d4f81a6d3aeb fc696fb983ec735b4a516792cb168ca09124872c

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drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.build-id/cd/
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drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.build-id/db/
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drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.build-id/e6/
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drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root     23536 2020-09-02 13:39 ./usr/lib/debug/.build-id/e7/3660d5850eccfa4fd187f506e2d4f81a6d3aeb.debug
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root    137156 2020-09-02 13:39 ./usr/lib/debug/.build-id/fc/696fb983ec735b4a516792cb168ca09124872c.debug
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    490828 2020-09-02 13:39 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/hhsuite.debug
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-09-02 13:39 ./usr/share/doc/hhsuite-dbgsym -> hhsuite


hhsuite_3.3.0+ds-4_armhf.deb
----------------------------

 new Debian package, version 2.0.
 size 10200860 bytes: control archive=2820 bytes.
    1470 bytes,    29 lines      control              
    4311 bytes,    65 lines      md5sums              
 Package: hhsuite
 Version: 3.3.0+ds-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 76333
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libstdc++6 (>= 9), perl:any, hhsuite-data (= 3.3.0+ds-4), python3
 Conflicts: ffindex
 Built-Using: simde (= 0.6.0-3)
 Section: science
 Priority: optional
 Homepage: https://toolkit.tuebingen.mpg.de/
 Description: sensitive protein sequence searching based on HMM-HMM alignment
  HH-suite is an open-source software package for sensitive protein sequence
  searching based on the pairwise alignment of hidden Markov models (HMMs).
  .
  This package contains HHsearch and HHblits among other programs and utilities.
  .
  HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
  and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
  proteins. HHsearch is often used for protein structure prediction to detect
  homologous templates and to build highly accurate query-template pairwise
  alignments for homology modeling.
  .
  HHblits can build high-quality MSAs starting from single sequences or from
  MSAs. It transforms these into a query HMM and, using an iterative search
  strategy, adds significantly similar sequences from the previous search to
  the updated query HMM for the next search iteration. Compared to PSI-BLAST,
  HHblits is faster, up to twice as sensitive and produces more accurate
  alignments.

drwxr-xr-x root/root         0 2020-09-02 13:39 ./
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/bin/
-rwxr-xr-x root/root     38548 2020-09-02 13:39 ./usr/bin/a3m_database_extract
-rwxr-xr-x root/root     42644 2020-09-02 13:39 ./usr/bin/a3m_database_filter
-rwxr-xr-x root/root     38548 2020-09-02 13:39 ./usr/bin/a3m_database_reduce
-rwxr-xr-x root/root     38548 2020-09-02 13:39 ./usr/bin/a3m_extract
-rwxr-xr-x root/root     38548 2020-09-02 13:39 ./usr/bin/a3m_reduce
-rwxr-xr-x root/root     22192 2020-09-02 13:39 ./usr/bin/ffindex_apply
-rwxr-xr-x root/root     18128 2020-09-02 13:39 ./usr/bin/ffindex_build
-rwxr-xr-x root/root     18064 2020-09-02 13:39 ./usr/bin/ffindex_from_fasta
-rwxr-xr-x root/root     18016 2020-09-02 13:39 ./usr/bin/ffindex_from_fasta_with_split
-rwxr-xr-x root/root     18048 2020-09-02 13:39 ./usr/bin/ffindex_get
-rwxr-xr-x root/root     18096 2020-09-02 13:39 ./usr/bin/ffindex_modify
-rwxr-xr-x root/root     18016 2020-09-02 13:39 ./usr/bin/ffindex_order
-rwxr-xr-x root/root     18016 2020-09-02 13:39 ./usr/bin/ffindex_reduce
-rwxr-xr-x root/root     13920 2020-09-02 13:39 ./usr/bin/ffindex_unpack
-rwxr-xr-x root/root   7972512 2020-09-02 13:39 ./usr/bin/hhalign
-rwxr-xr-x root/root   7984800 2020-09-02 13:39 ./usr/bin/hhalign_omp
-rwxr-xr-x root/root   7935648 2020-09-02 13:39 ./usr/bin/hhblits
-rwxr-xr-x root/root   7943840 2020-09-02 13:39 ./usr/bin/hhblits_ca3m
-rwxr-xr-x root/root   7947936 2020-09-02 13:39 ./usr/bin/hhblits_omp
-rwxr-xr-x root/root   7517852 2020-09-02 13:39 ./usr/bin/hhconsensus
-rwxr-xr-x root/root    263832 2020-09-02 13:39 ./usr/bin/hhfilter
-rwxr-xr-x root/root   7505564 2020-09-02 13:39 ./usr/bin/hhmake
-rwxr-xr-x root/root   7968416 2020-09-02 13:39 ./usr/bin/hhsearch
-rwxr-xr-x root/root   7976608 2020-09-02 13:39 ./usr/bin/hhsearch_omp
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/
lrwxrwxrwx root/root         0 2020-09-02 13:39 ./usr/lib/hh -> hhsuite
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/hhsuite/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/lib/hhsuite/data/
-rw-r--r-- root/root      1986 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete
-rw-r--r-- root/root       135 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.phr
-rw-r--r-- root/root       112 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.pin
-rw-r--r-- root/root       433 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.psq
lrwxrwxrwx root/root         0 2020-09-02 13:39 ./usr/lib/hhsuite/scripts -> ../../share/hhsuite/scripts
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/libexec/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/libexec/hhsuite/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/libexec/hhsuite/bin/
-rwxr-xr-x root/root   6190760 2020-09-02 13:39 ./usr/libexec/hhsuite/bin/cstranslate
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/doc/hhsuite/
-rw-r--r-- root/root      1986 2020-08-16 23:16 ./usr/share/doc/hhsuite/README.md.gz
-rw-r--r-- root/root      3019 2020-09-02 13:39 ./usr/share/doc/hhsuite/changelog.Debian.gz
-rw-r--r-- root/root     20348 2020-08-31 10:16 ./usr/share/doc/hhsuite/copyright
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/doc/hhsuite/examples/
-rw-r--r-- root/root     32126 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.a3m
-rw-r--r-- root/root     57578 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhm
-rw-r--r-- root/root      4999 2020-09-02 13:39 ./usr/share/doc/hhsuite/examples/query.hhr
-rw-r--r-- root/root       506 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.seq
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/hhsuite/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/hhsuite/scripts/
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-rw-r--r-- root/root      4710 2020-08-16 23:16 ./usr/share/hhsuite/scripts/HHPaths.pm
-rwxr-xr-x root/root      8021 2020-09-02 13:39 ./usr/share/hhsuite/scripts/a3m.py
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-rwxr-xr-x root/root       438 2020-09-02 13:39 ./usr/share/hhsuite/scripts/check_a3m.py
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-rwxr-xr-x root/root      4654 2020-09-02 13:39 ./usr/share/hhsuite/scripts/create_profile_from_hhm.pl
-rwxr-xr-x root/root      6815 2020-09-02 13:39 ./usr/share/hhsuite/scripts/create_profile_from_hmmer.pl
-rwxr-xr-x root/root      2081 2020-09-02 13:39 ./usr/share/hhsuite/scripts/ffindex.py
-rwxr-xr-x root/root       446 2020-09-02 13:39 ./usr/share/hhsuite/scripts/get_a3m_size.py
-rwxr-xr-x root/root      7179 2020-09-02 13:39 ./usr/share/hhsuite/scripts/hh_reader.py
-rwxr-xr-x root/root     48079 2020-09-02 13:39 ./usr/share/hhsuite/scripts/hhmakemodel.pl
-rwxr-xr-x root/root     87343 2020-09-02 13:39 ./usr/share/hhsuite/scripts/hhmakemodel.py
-rwxr-xr-x root/root     16961 2020-09-02 13:39 ./usr/share/hhsuite/scripts/hhsuitedb.py
-rwxr-xr-x root/root     20214 2020-08-16 23:16 ./usr/share/hhsuite/scripts/mergeali.pl
-rwxr-xr-x root/root      5717 2020-09-02 13:39 ./usr/share/hhsuite/scripts/multithread.pl
-rwxr-xr-x root/root     40490 2020-09-02 13:39 ./usr/share/hhsuite/scripts/pdb2fasta.pl
-rwxr-xr-x root/root     13183 2020-09-02 13:39 ./usr/share/hhsuite/scripts/pdbfilter.pl
-rwxr-xr-x root/root      8648 2020-09-02 13:39 ./usr/share/hhsuite/scripts/pdbfilter.py
-rwxr-xr-x root/root     28328 2020-08-16 23:16 ./usr/share/hhsuite/scripts/reformat.pl
-rwxr-xr-x root/root     14019 2020-09-02 13:39 ./usr/share/hhsuite/scripts/renumberpdb.pl
-rwxr-xr-x root/root      3651 2020-09-02 13:39 ./usr/share/hhsuite/scripts/splitfasta.pl
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/man/
drwxr-xr-x root/root         0 2020-09-02 13:39 ./usr/share/man/man1/
-rw-r--r-- root/root      3092 2020-09-02 13:39 ./usr/share/man/man1/hhalign.1.gz
-rw-r--r-- root/root      4144 2020-09-02 13:39 ./usr/share/man/man1/hhblits.1.gz
-rw-r--r-- root/root      4155 2020-09-02 13:39 ./usr/share/man/man1/hhblits_omp.1.gz
-rw-r--r-- root/root      1031 2020-09-02 13:39 ./usr/share/man/man1/hhconsensus.1.gz
-rw-r--r-- root/root      1024 2020-09-02 13:39 ./usr/share/man/man1/hhfilter.1.gz
-rw-r--r-- root/root      1658 2020-09-02 13:39 ./usr/share/man/man1/hhmake.1.gz
-rw-r--r-- root/root      3360 2020-09-02 13:39 ./usr/share/man/man1/hhsearch.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 600916
Build-Time: 1208
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 455
Job: hhsuite_3.3.0+ds-4
Machine Architecture: armhf
Package: hhsuite
Package-Time: 1723
Source-Version: 3.3.0+ds-4
Space: 600916
Status: successful
Version: 3.3.0+ds-4
--------------------------------------------------------------------------------
Finished at 2020-10-11T07:02:38Z
Build needed 00:28:43, 600916k disc space
Raspbian Package Auto-Building

Build log for hhsuite (3.3.0+ds-4) on armhf
