gffread →
0.12.1-4 →
armhf → 2021-01-10 07:19:33
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| gffread 0.12.1-4 (armhf) Sun, 10 Jan 2021 07:15:22 +0000 |
+==============================================================================+
Package: gffread
Version: 0.12.1-4
Source Version: 0.12.1-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-d099bea3-62a3-48bc-90e2-6cb70b66bf89' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/gffread-Dri1Wj/resolver-pBK2Q9' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.1 MB in 10s (2505 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gffread' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gffread.git
Please use:
git clone https://salsa.debian.org/med-team/gffread.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 412 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main gffread 0.12.1-4 (dsc) [2407 B]
Get:2 http://172.17.0.1/private bullseye-staging/main gffread 0.12.1-4 (tar) [401 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main gffread 0.12.1-4 (diff) [8396 B]
Fetched 412 kB in 1s (518 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gffread-Dri1Wj/gffread-0.12.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gffread-Dri1Wj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libgclib-dev (>= 0.11.10), build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libgclib-dev (>= 0.11.10), build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [383 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [471 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgclib-dev libgclib2 libicu67
libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgclib-dev libgclib2 libicu67
libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
sensible-utils
0 upgraded, 34 newly installed, 0 to remove and 31 not upgraded.
Need to get 17.6 MB of archives.
After this operation, 65.3 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-3 [133 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-2 [162 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-5 [8288 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgclib2 armhf 0.11.10+ds-2 [114 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libgclib-dev armhf 0.11.10+ds-2 [81.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package bsdextrautils.
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgclib2:armhf (0.11.10+ds-2) ...
Setting up bsdextrautils (2.36.1-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-5) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-3) ...
Setting up file (1:5.39-3) ...
Setting up libgclib-dev:armhf (0.11.10+ds-2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.12-3) ...
Setting up autopoint (0.21-3) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.182-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up gettext (0.21-3) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3.1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-6+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-6+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-1+rpi1 gcc-10_10.2.1-1+rpi1 libc6-dev_2.31-6+rpi1 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12+deb11u1 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-6+rpi1 binutils-arm-linux-gnueabihf_2.35.1-6+rpi1 binutils-common_2.35.1-6+rpi1 bsdextrautils_2.36.1-3 bsdutils_1:2.36.1-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-1+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-1+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-1+rpi1 gcc-10-base_10.2.1-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gcc-9-base_9.3.0-19+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg6.0_2.1.12+deb11u1 libarchive-zip-perl_1.68-1 libasan6_10.2.1-1+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-1+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-1 libaudit1_1:3.0-1 libbinutils_2.35.1-6+rpi1 libblkid1_2.36.1-3 libbz2-1.0_1.0.8-4 libc-bin_2.31-6+rpi1 libc-dev-bin_2.31-6+rpi1 libc6_2.31-6+rpi1 libc6-dev_2.31-6+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-1+rpi1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-6+rpi1 libctf0_2.35.1-6+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255+b1 libdebhelper-perl_13.3.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-2 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.1-1+rpi1 libgcc-s1_10.2.1-1+rpi1 libgclib-dev_0.11.10+ds-2 libgclib2_0.11.10+ds-2 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.1-1+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libisl23_0.23-1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-3 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssl1.1_1.1.1i-1 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.1-1+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-3 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-3 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020e-1 util-linux_2.36.1-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: gffread
Binary: gffread
Architecture: any
Version: 0.12.1-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Michael R. Crusoe <crusoe@debian.org>, Steffen Moeller <moeller@debian.org>
Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/gffread
Vcs-Git: https://salsa.debian.org/med-team/gffread.git
Testsuite: autopkgtest
Testsuite-Triggers: augustus-doc, bash, bedtools-test, cnvkit, dpkg-dev, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir, proteinortho, python3-gffutils, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades, trinityrnaseq-examples
Build-Depends: debhelper-compat (= 13), libgclib-dev (>= 0.11.10)
Package-List:
gffread deb science optional arch=any
Checksums-Sha1:
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21bbe2087387de547d05cbcfbc8dd1a94851a614 8396 gffread_0.12.1-4.debian.tar.xz
Checksums-Sha256:
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Files:
dcae0352db3183fd3c71dde3a7950538 401422 gffread_0.12.1.orig.tar.gz
18abec1511a20fc3dcb60cc3a0107f75 8396 gffread_0.12.1-4.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.GKOScoOi/trustedkeys.kbx': General error
gpgv: Signature made Fri Jan 8 08:03:41 2021 UTC
gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gffread_0.12.1-4.dsc
dpkg-source: info: extracting gffread in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking gffread_0.12.1.orig.tar.gz
dpkg-source: info: unpacking gffread_0.12.1-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying gclib.patch
dpkg-source: info: applying hardening
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d099bea3-62a3-48bc-90e2-6cb70b66bf89
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c22944
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package gffread
dpkg-buildpackage: info: source version 0.12.1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- 'LINKER=$(CXX)'
make -j4 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\)
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -std=c++0x -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gffread.cpp -o gffread.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -std=c++0x -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gff_utils.cpp -o gff_utils.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -o gffread gffread.o gff_utils.o -lgclib -pthread
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/gffread/usr/bin/gffread contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gffread/usr/bin/gffread was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gffread-dbgsym' in '../gffread-dbgsym_0.12.1-4_armhf.deb'.
dpkg-deb: building package 'gffread' in '../gffread_0.12.1-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../gffread_0.12.1-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-10T07:19:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gffread_0.12.1-4_armhf.changes:
-------------------------------
Format: 1.8
Date: Fri, 08 Jan 2021 08:52:52 +0100
Source: gffread
Binary: gffread gffread-dbgsym
Architecture: armhf
Version: 0.12.1-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
gffread - GFF/GTF format conversions, region filtering, FASTA sequence extr
Changes:
gffread (0.12.1-4) unstable; urgency=medium
.
* Team upload.
* Skip some new AUGUSTUS GTFs that are likely bad, causing autopkgtests to
fail.
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Files:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: gffread
Binary: gffread gffread-dbgsym
Architecture: armhf
Version: 0.12.1-4
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 10 Jan 2021 07:19:19 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-3),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11+rpi1),
base-passwd (= 3.5.48),
bash (= 5.1-1),
binutils (= 2.35.1-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.1-6+rpi1),
binutils-common (= 2.35.1-6+rpi1),
bsdextrautils (= 2.36.1-3),
bsdutils (= 1:2.36.1-3),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4),
cpp (= 4:10.2.0-1+rpi1),
cpp-10 (= 10.2.1-1+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-5),
debconf (= 1.5.74),
debhelper (= 13.3.1),
debianutils (= 4.11.2),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13+20201015-2),
file (= 1:5.39-3),
findutils (= 4.7.0+git20201010-2),
g++ (= 4:10.2.0-1+rpi1),
g++-10 (= 10.2.1-1+rpi1),
gcc (= 4:10.2.0-1+rpi1),
gcc-10 (= 10.2.1-1+rpi1),
gcc-10-base (= 10.2.1-1+rpi1),
gettext (= 0.21-3),
gettext-base (= 0.21-3),
grep (= 3.6-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-9),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.1-1+rpi1),
libatomic1 (= 10.2.1-1+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-1),
libaudit1 (= 1:3.0-1),
libbinutils (= 2.35.1-6+rpi1),
libblkid1 (= 2.36.1-3),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.31-6+rpi1),
libc-dev-bin (= 2.31-6+rpi1),
libc6 (= 2.31-6+rpi1),
libc6-dev (= 2.31-6+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-1+rpi1),
libcom-err2 (= 1.45.6-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35.1-6+rpi1),
libctf0 (= 2.35.1-6+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.255+b1),
libdebhelper-perl (= 13.3.1),
libdpkg-perl (= 1.20.5+rpi1),
libelf1 (= 0.182-2),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libgcc-10-dev (= 10.2.1-1+rpi1),
libgcc-s1 (= 10.2.1-1+rpi1),
libgclib-dev (= 0.11.10+ds-2),
libgclib2 (= 0.11.10+ds-2),
libgcrypt20 (= 1.8.7-2),
libgdbm-compat4 (= 1.18.1-5.1),
libgdbm6 (= 1.18.1-5.1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgomp1 (= 10.2.1-1+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.18.3-4),
libicu67 (= 67.1-5),
libisl23 (= 0.23-1),
libk5crypto3 (= 1.18.3-4),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-4),
libkrb5support0 (= 1.18.3-4),
liblz4-1 (= 1.9.3-1+rpi1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmount1 (= 2.36.1-3),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.0-6),
libpipeline1 (= 1.5.3-1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-2+b1),
libsigsegv2 (= 2.12-3),
libsmartcols1 (= 2.36.1-3),
libssl1.1 (= 1.1.1i-1),
libstdc++-10-dev (= 10.2.1-1+rpi1),
libstdc++6 (= 10.2.1-1+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 246.6-4+rpi1),
libtinfo6 (= 6.2+20201114-1),
libtirpc-common (= 1.2.6-3),
libtirpc-dev (= 1.2.6-3),
libtirpc3 (= 1.2.6-3),
libtool (= 2.4.6-14),
libubsan1 (= 10.2.1-1+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 246.6-4+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36.1-3),
libxml2 (= 2.9.10+dfsg-6.3),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.9.6-1+rpi1+b1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-1),
ncurses-bin (= 6.2+20201114-1),
patch (= 2.7.6-6),
perl (= 5.32.0-6),
perl-base (= 5.32.0-6),
perl-modules-5.32 (= 5.32.0-6),
po-debconf (= 1.0.21+nmu1),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-5),
tar (= 1.32+dfsg-1+rpi1),
util-linux (= 2.36.1-3),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1610092372"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gffread-dbgsym_0.12.1-4_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 121756 bytes: control archive=536 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: gffread-dbgsym
Source: gffread
Version: 0.12.1-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 161
Depends: gffread (= 0.12.1-4)
Section: debug
Priority: optional
Description: debug symbols for gffread
Build-Ids: d849e0428e1f513caec7bd25763a16bab31ad21c
drwxr-xr-x root/root 0 2021-01-08 07:52 ./
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/lib/debug/.build-id/d8/
-rw-r--r-- root/root 154520 2021-01-08 07:52 ./usr/lib/debug/.build-id/d8/49e0428e1f513caec7bd25763a16bab31ad21c.debug
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-08 07:52 ./usr/share/doc/gffread-dbgsym -> gffread
gffread_0.12.1-4_armhf.deb
--------------------------
new Debian package, version 2.0.
size 37952 bytes: control archive=772 bytes.
635 bytes, 14 lines control
258 bytes, 4 lines md5sums
Package: gffread
Version: 0.12.1-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 167
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libgclib2 (>= 0.11.10+ds), libstdc++6 (>= 4.1.1)
Breaks: cufflinks (<< 2.2.1+dfsg.1-4)
Replaces: cufflinks (<< 2.2.1+dfsg.1-4)
Section: science
Priority: optional
Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml
Description: GFF/GTF format conversions, region filtering, FASTA sequence extraction
Gffread is a GFF/GTF parsing utility providing format conversions,
region filtering, FASTA sequence extraction and more.
drwxr-xr-x root/root 0 2021-01-08 07:52 ./
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/bin/
-rwxr-xr-x root/root 153060 2021-01-08 07:52 ./usr/bin/gffread
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/doc/gffread/
-rw-r--r-- root/root 1173 2021-01-08 07:52 ./usr/share/doc/gffread/changelog.Debian.gz
-rw-r--r-- root/root 1340 2021-01-08 07:41 ./usr/share/doc/gffread/copyright
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/man/
drwxr-xr-x root/root 0 2021-01-08 07:52 ./usr/share/man/man1/
-rw-r--r-- root/root 3096 2021-01-08 07:52 ./usr/share/man/man1/gffread.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 3272
Build-Time: 17
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 197
Job: gffread_0.12.1-4
Machine Architecture: armhf
Package: gffread
Package-Time: 238
Source-Version: 0.12.1-4
Space: 3272
Status: successful
Version: 0.12.1-4
--------------------------------------------------------------------------------
Finished at 2021-01-10T07:19:20Z
Build needed 00:03:58, 3272k disk space