fastqtl →
2.184+dfsg-3 →
armhf → 2016-06-27 15:06:48
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| fastqtl 2.184+dfsg-3 (armhf) 27 Jun 2016 14:39 |
+==============================================================================+
Package: fastqtl
Version: 2.184+dfsg-3
Source Version: 2.184+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/fastqtl-vMUUTG/fastqtl-2.184+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fastqtl-vMUUTG' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-3cb5b604-7688-42b0-ae7d-c4058dde6e8b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9089 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.2 MB in 22s (910 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/fastqtl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/fastqtl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 17.1 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main fastqtl 2.184+dfsg-3 (dsc) [2165 B]
Get:2 http://172.17.0.1/private stretch-staging/main fastqtl 2.184+dfsg-3 (tar) [17.1 MB]
Get:3 http://172.17.0.1/private stretch-staging/main fastqtl 2.184+dfsg-3 (diff) [18.7 kB]
Fetched 17.1 MB in 1s (10.1 MB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-O44ybM/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Packages [526 B]
Ign:4 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Sources [276 B]
Get:5 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ Packages [759 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-O44ybM/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-O44ybM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12735 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev
Filtered Build-Depends: debhelper (>= 9), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev
dpkg-deb: building package 'sbuild-build-depends-fastqtl-dummy' in '/<<BUILDDIR>>/resolver-Bku2ea/apt_archive/sbuild-build-depends-fastqtl-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Sources [269 B]
Get:5 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Packages [587 B]
Ign:4 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Sources [402 B]
Get:5 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ Packages [899 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-Bku2ea/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install fastqtl build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-5 debhelper
dh-autoreconf dh-strip-nondeterminism file g++-5 gcc-5 gcc-5-base gettext
gettext-base gfortran gfortran-5 groff-base icu-devtools intltool-debian
libarchive-zip-perl libasan2 libblas-common libblas-dev libblas3
libboost-dev libboost-iostreams-dev libboost-iostreams1.58-dev
libboost-iostreams1.58.0 libboost-program-options-dev
libboost-program-options1.58-dev libboost-program-options1.58.0
libboost-regex1.58-dev libboost-regex1.58.0 libboost1.58-dev libbsd0
libcroco3 libcurl3-gnutls libeigen3-dev libffi6
libfile-stripnondeterminism-perl libgcc-5-dev libgfortran-5-dev libgfortran3
libglib2.0-0 libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4
libhts-dev libhts1 libicu-dev libicu55 libidn11 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libnettle6 libnghttp2-14
libp11-kit0 libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2
libssh2-1 libssl1.0.2 libstdc++-5-dev libtasn1-6 libtimedate-perl libtool
libunistring0 libxml2 m4 man-db pkg-config po-debconf r-mathlib zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-5-locales dh-make gcc-5-doc libstdc++6-5-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
libgfortran3-dbg groff liblapack-doc-man liblapack-doc libboost-doc
libboost1.58-doc libboost-atomic1.58-dev libboost-chrono1.58-dev
libboost-context1.58-dev libboost-coroutine1.58-dev
libboost-date-time1.58-dev libboost-exception1.58-dev
libboost-filesystem1.58-dev libboost-graph1.58-dev
libboost-graph-parallel1.58-dev libboost-locale1.58-dev libboost-log1.58-dev
libboost-math1.58-dev libboost-mpi1.58-dev libboost-mpi-python1.58-dev
libboost-python1.58-dev libboost-random1.58-dev
libboost-serialization1.58-dev libboost-signals1.58-dev
libboost-system1.58-dev libboost-test1.58-dev libboost-thread1.58-dev
libboost-timer1.58-dev libboost-wave1.58-dev libboost1.58-tools-dev
libmpfrc++-dev libntl-dev libeigen3-doc libmrpt-dev gnutls-bin gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user icu-doc
libstdc++-5-doc libtool-doc gcj-jdk less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core
libmail-sendmail-perl r-base-core r-base-dev
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
gfortran-5 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libboost-dev libboost-iostreams-dev
libboost-iostreams1.58-dev libboost-iostreams1.58.0
libboost-program-options-dev libboost-program-options1.58-dev
libboost-program-options1.58.0 libboost-regex1.58-dev libboost-regex1.58.0
libboost1.58-dev libbsd0 libcroco3 libcurl3-gnutls libeigen3-dev libffi6
libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0
libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4 libhts-dev
libhts1 libicu-dev libicu55 libidn11 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libmagic1 libnettle6 libnghttp2-14 libp11-kit0
libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1
libssl1.0.2 libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 m4
man-db pkg-config po-debconf r-mathlib sbuild-build-depends-fastqtl-dummy
zlib1g-dev
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libgcc-5-dev libstdc++-5-dev
7 upgraded, 77 newly installed, 0 to remove and 20 not upgraded.
Need to get 111 MB/122 MB of archives.
After this operation, 341 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Bku2ea/apt_archive ./ sbuild-build-depends-fastqtl-dummy 0.invalid.0 [830 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.4.0-4 [223 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.4.0-4 [24.5 MB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.4.0-4 [5292 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.4.0-4 [22.9 MB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.4.0-4 [1432 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.4.0-4 [447 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.4.0-4 [172 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.58.0 armhf 1.58.0+dfsg-5+b1 [48.7 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3.1 [110 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.8-1 [44.1 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.13-1 [737 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.2+dfsg-1 [57.2 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.2+dfsg-1 [111 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.2+dfsg-1 [261 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.2+dfsg-1 [131 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.4.0-4 [182 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.4.0-4 [23.7 MB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-3 [1370 B]
Get:55 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 55.1-7 [163 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libboost1.58-dev armhf 1.58.0+dfsg-5+b1 [6232 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.58.0.2 [3548 B]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58.0 armhf 1.58.0+dfsg-5+b1 [226 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 55.1-7 [8339 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58-dev armhf 1.58.0+dfsg-5+b1 [312 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.58-dev armhf 1.58.0+dfsg-5+b1 [58.4 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.58.0.2 [3190 B]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libboost-program-options1.58.0 armhf 1.58.0+dfsg-5+b1 [137 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libboost-program-options1.58-dev armhf 1.58.0+dfsg-5+b1 [182 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libboost-program-options-dev armhf 1.58.0.2 [3210 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.11.1-1 [66.6 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2.1 [121 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.47.0-1 [244 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.1+dfsg-2 [812 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.1-1+rpi1 [215 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libhts-dev armhf 1.3.1-1+rpi1 [270 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf r-mathlib armhf 3.3.0.20160615-1 [1484 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libeigen3-dev all 3.3~beta1-2 [686 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 111 MB in 10s (10.3 MB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12735 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-7_armhf.deb ...
Unpacking groff-base (1.22.3-7) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Preparing to unpack .../libasan2_5.4.0-4_armhf.deb ...
Unpacking libasan2:armhf (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../g++-5_5.4.0-4_armhf.deb ...
Unpacking g++-5 (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../gcc-5_5.4.0-4_armhf.deb ...
Unpacking gcc-5 (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../cpp-5_5.4.0-4_armhf.deb ...
Unpacking cpp-5 (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../libstdc++-5-dev_5.4.0-4_armhf.deb ...
Unpacking libstdc++-5-dev:armhf (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../libgcc-5-dev_5.4.0-4_armhf.deb ...
Unpacking libgcc-5-dev:armhf (5.4.0-4) over (5.3.1-21) ...
Preparing to unpack .../gcc-5-base_5.4.0-4_armhf.deb ...
Unpacking gcc-5-base:armhf (5.4.0-4) over (5.3.1-21) ...
Selecting previously unselected package libboost-iostreams1.58.0:armhf.
Preparing to unpack .../libboost-iostreams1.58.0_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-iostreams1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../libssl1.0.2_1.0.2h-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2h-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.25-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.25-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.25-2_armhf.deb ...
Unpacking file (1:5.25-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../libnettle6_3.2-1_armhf.deb ...
Unpacking libnettle6:armhf (3.2-1) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../libhogweed4_3.2-1_armhf.deb ...
Unpacking libhogweed4:armhf (3.2-1) ...
Selecting previously unselected package libidn11:armhf.
Preparing to unpack .../libidn11_1.32-3.1_armhf.deb ...
Unpacking libidn11:armhf (1.32-3.1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.23.2-3_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.2-3) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.8-1_armhf.deb ...
Unpacking libtasn1-6:armhf (4.8-1) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../libgnutls30_3.4.13-1_armhf.deb ...
Unpacking libgnutls30:armhf (3.4.13-1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.14.2+dfsg-1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../libk5crypto3_1.14.2+dfsg-1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../libkrb5-3_1.14.2+dfsg-1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../libgssapi-krb5-2_1.14.2+dfsg-1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.3+dfsg1-1.2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.48.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.48.1-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ...
Unpacking libarchive-zip-perl (1.57-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.019-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.019-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.019-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.019-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.6-0.1_all.deb ...
Unpacking libtool (2.4.6-0.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160403_all.deb ...
Unpacking debhelper (9.20160403) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_6.1.1-1+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.1.1-1+rpi1) ...
Selecting previously unselected package libgfortran-5-dev:armhf.
Preparing to unpack .../libgfortran-5-dev_5.4.0-4_armhf.deb ...
Unpacking libgfortran-5-dev:armhf (5.4.0-4) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.4.0-4_armhf.deb ...
Unpacking gfortran-5 (5.4.0-4) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.3.1-3_armhf.deb ...
Unpacking gfortran (4:5.3.1-3) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../icu-devtools_55.1-7_armhf.deb ...
Unpacking icu-devtools (55.1-7) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_3.6.0-2_armhf.deb ...
Unpacking libblas-common (3.6.0-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_3.6.0-2_armhf.deb ...
Unpacking libblas3 (3.6.0-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_3.6.0-2_armhf.deb ...
Unpacking libblas-dev (3.6.0-2) ...
Selecting previously unselected package libboost1.58-dev:armhf.
Preparing to unpack .../libboost1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../libboost-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libboost-regex1.58.0:armhf.
Preparing to unpack .../libboost-regex1.58.0_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-regex1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../libicu-dev_55.1-7_armhf.deb ...
Unpacking libicu-dev:armhf (55.1-7) ...
Selecting previously unselected package libboost-regex1.58-dev:armhf.
Preparing to unpack .../libboost-regex1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-regex1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-iostreams1.58-dev:armhf.
Preparing to unpack .../libboost-iostreams1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-iostreams1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../libboost-iostreams-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libboost-program-options1.58.0:armhf.
Preparing to unpack .../libboost-program-options1.58.0_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-program-options1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-program-options1.58-dev:armhf.
Preparing to unpack .../libboost-program-options1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-program-options1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-program-options-dev:armhf.
Preparing to unpack .../libboost-program-options-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-program-options-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../libnghttp2-14_1.11.1-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.11.1-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../libssh2-1_1.5.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.5.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../libcurl3-gnutls_7.47.0-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.47.0-1) ...
Selecting previously unselected package libgsl2:armhf.
Preparing to unpack .../libgsl2_2.1+dfsg-2_armhf.deb ...
Unpacking libgsl2:armhf (2.1+dfsg-2) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../libgsl-dev_2.1+dfsg-2_armhf.deb ...
Unpacking libgsl-dev (2.1+dfsg-2) ...
Selecting previously unselected package libhts1:armhf.
Preparing to unpack .../libhts1_1.3.1-1+rpi1_armhf.deb ...
Unpacking libhts1:armhf (1.3.1-1+rpi1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../libhts-dev_1.3.1-1+rpi1_armhf.deb ...
Unpacking libhts-dev:armhf (1.3.1-1+rpi1) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../pkg-config_0.29-4_armhf.deb ...
Unpacking pkg-config (0.29-4) ...
Selecting previously unselected package r-mathlib.
Preparing to unpack .../r-mathlib_3.3.0.20160615-1_armhf.deb ...
Unpacking r-mathlib (3.3.0.20160615-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libeigen3-dev.
Preparing to unpack .../libeigen3-dev_3.3~beta1-2_all.deb ...
Unpacking libeigen3-dev (3.3~beta1-2) ...
Selecting previously unselected package sbuild-build-depends-fastqtl-dummy.
Preparing to unpack .../sbuild-build-depends-fastqtl-dummy.deb ...
Unpacking sbuild-build-depends-fastqtl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-9) ...
Setting up groff-base (1.22.3-7) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gcc-5-base:armhf (5.4.0-4) ...
Setting up libasan2:armhf (5.4.0-4) ...
Setting up cpp-5 (5.4.0-4) ...
Setting up libgcc-5-dev:armhf (5.4.0-4) ...
Setting up gcc-5 (5.4.0-4) ...
Setting up libstdc++-5-dev:armhf (5.4.0-4) ...
Setting up g++-5 (5.4.0-4) ...
Setting up libboost-iostreams1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libidn11:armhf (1.32-3.1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.8-1) ...
Setting up libgnutls30:armhf (3.4.13-1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up libkrb5support0:armhf (1.14.2+dfsg-1) ...
Setting up libk5crypto3:armhf (1.14.2+dfsg-1) ...
Setting up libkrb5-3:armhf (1.14.2+dfsg-1) ...
Setting up libgssapi-krb5-2:armhf (1.14.2+dfsg-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libgfortran3:armhf (6.1.1-1+rpi1) ...
Setting up libgfortran-5-dev:armhf (5.4.0-4) ...
Setting up gfortran-5 (5.4.0-4) ...
Setting up gfortran (4:5.3.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up icu-devtools (55.1-7) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libboost1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-dev:armhf (1.58.0.2) ...
Setting up libboost-regex1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Setting up libicu-dev:armhf (55.1-7) ...
Setting up libboost-regex1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-iostreams1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-iostreams-dev:armhf (1.58.0.2) ...
Setting up libboost-program-options1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-program-options1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-program-options-dev:armhf (1.58.0.2) ...
Setting up libnghttp2-14:armhf (1.11.1-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up libssh2-1:armhf (1.5.0-2.1) ...
Setting up libcurl3-gnutls:armhf (7.47.0-1) ...
Setting up libgsl2:armhf (2.1+dfsg-2) ...
Setting up libgsl-dev (2.1+dfsg-2) ...
Setting up libhts1:armhf (1.3.1-1+rpi1) ...
Setting up libhts-dev:armhf (1.3.1-1+rpi1) ...
Setting up pkg-config (0.29-4) ...
Setting up r-mathlib (3.3.0.20160615-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libeigen3-dev (3.3~beta1-2) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up sbuild-build-depends-fastqtl-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Processing triggers for libc-bin (2.22-9) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.6.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-10 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.22-9 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.12 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-10 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43-3 e2fsprogs_1.43-3 fakeroot_1.20.2-2 file_1:5.25-2 findutils_4.6.0+git+20160126-2 fuse2fs_1.43-3 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:5.3.1-3 gfortran-5_5.4.0-4 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-3 groff-base_1.22.3-7 gzip_1.6-5 hostname_3.17 icu-devtools_55.1-7 init_1.34 init-system-helpers_1.34 initscripts_2.88dsf-59.4 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10-4 libapt-pkg5.0_1.2.12 libarchive-zip-perl_1.57-1 libasan2_5.4.0-4 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblas-common_3.6.0-2 libblas-dev_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.28-5 libboost-dev_1.58.0.2 libboost-iostreams-dev_1.58.0.2 libboost-iostreams1.58-dev_1.58.0+dfsg-5+b1 libboost-iostreams1.58.0_1.58.0+dfsg-5+b1 libboost-program-options-dev_1.58.0.2 libboost-program-options1.58-dev_1.58.0+dfsg-5+b1 libboost-program-options1.58.0_1.58.0+dfsg-5+b1 libboost-regex1.58-dev_1.58.0+dfsg-5+b1 libboost-regex1.58.0_1.58.0+dfsg-5+b1 libboost1.58-dev_1.58.0+dfsg-5+b1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-9 libc-dev-bin_2.22-9 libc6_2.22-9 libc6-dev_2.22-9 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43-3 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3-gnutls_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.124-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libeigen3-dev_3.3~beta1-2 libfakeroot_1.20.2-2 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.6-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.4.0-4 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.13-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.22-2 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.14.2+dfsg-1 libhogweed4_3.2-1 libhts-dev_1.3.1-1+rpi1 libhts1_1.3.1-1+rpi1 libicu-dev_55.1-7 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libk5crypto3_1.14.2+dfsg-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkrb5-3_1.14.2+dfsg-1 libkrb5support0_1.14.2+dfsg-1 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libnettle6_3.2-1 libnghttp2-14_1.11.1-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libss2_1.43-3 libssh2-1_1.5.0-2.1 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-2 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-2 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.22-9 nano_2.5.3-3 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-config_0.29-4 po-debconf_1.0.19 procps_2:3.3.11-3 r-mathlib_3.3.0.20160615-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastqtl-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-2 systemd-sysv_230-2 sysv-rc_2.88dsf-59.4 sysvinit-utils_2.88dsf-59.4 tar_1.29-1+rpi1 tzdata_2016d-2 udev_230-2 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Jun 16 08:15:48 2016 UTC using RSA key ID 3AF9DDC1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./fastqtl_2.184+dfsg-3.dsc
dpkg-source: info: extracting fastqtl in fastqtl-2.184+dfsg
dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz
dpkg-source: info: unpacking fastqtl_2.184+dfsg-3.debian.tar.xz
dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch
dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-3cb5b604-7688-42b0-ae7d-c4058dde6e8b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package fastqtl
dpkg-buildpackage: info: source version 2.184+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build fastqtl-2.184+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
rm -f obj/*.o bin/fastQTL
make[1]: Leaving directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
mkdir -p /<<BUILDDIR>>/fastqtl-2.184+dfsg/obj/
mkdir -p /<<BUILDDIR>>/fastqtl-2.184+dfsg/bin/
/usr/bin/make CXXFLAGS='-g -fPIE -fstack-protector-strong -Wformat -Werror=format-security'
make[2]: Entering directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc
g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc
g++ -O3 -fPIE -pie -Wl,-z,relro -Wl,-z,now obj/analysisPermutationSequence.o obj/df.o obj/analysisPermutationInteraction.o obj/utils.o obj/tabix.o obj/residualizer.o obj/analysisPermutationPerGroup.o obj/management.o obj/analysisNominal.o obj/commands.o obj/analysisMapping.o obj/readPhenotypes.o obj/mle.o obj/analysisPermutation.o obj/fastQTL.o obj/readGroups.o obj/readThresholds.o obj/readInteractions.o obj/readGenotypes.o obj/readInclusionsExclusions.o obj/readCovariates.o /usr/lib/arm-linux-gnueabihf/libhts.so -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL
make[2]: Leaving directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
cd /<<BUILDDIR>>/fastqtl-2.184+dfsg/example/ && \
tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner
covariates.txt.gz
genotypes.vcf.gz
genotypes.vcf.gz.tbi
interaction.txt
phenotypes.bed.gz
phenotypes.bed.gz.tbi
make[1]: Leaving directory '/<<BUILDDIR>>/fastqtl-2.184+dfsg'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastqtl/usr/bin/fastQTL was not linked against libblas.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastqtl/usr/bin/fastQTL was not linked against libz.so.1 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'fastqtl-dbgsym' in '../fastqtl-dbgsym_2.184+dfsg-3_armhf.deb'.
dpkg-deb: building package 'fastqtl' in '../fastqtl_2.184+dfsg-3_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../fastqtl_2.184+dfsg-3_armhf.changes
dpkg-genchanges: warning: package fastqtl-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build fastqtl-2.184+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160627-1506
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fastqtl_2.184+dfsg-3_armhf.changes:
-----------------------------------
Format: 1.8
Date: Sun, 12 Jun 2016 04:25:21 +0200
Source: fastqtl
Binary: fastqtl fastqtl-doc
Architecture: armhf
Version: 2.184+dfsg-3
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <bob.dybian@gmail.com>
Description:
fastqtl - Quantitative Trait Loci (QTL) mapper in cis for molecular phenoty
fastqtl-doc - QTL mapper in cis for molecular phenotypes - documentation
Closes: 826885
Changes:
fastqtl (2.184+dfsg-3) unstable; urgency=low
.
* Remove the manpage from fastqtl-doc. (Closes: #826885)
Checksums-Sha1:
7f31cebd8e18f6b6e0c11c3c6e3f0dec0f9ea9a2 4269562 fastqtl-dbgsym_2.184+dfsg-3_armhf.deb
4fcb4745a07651ebedbc9857a6ced1d5f308d8e7 172758 fastqtl_2.184+dfsg-3_armhf.deb
Checksums-Sha256:
ae5d1225afd45b11c29a4ff4d9e3cc01f7dcbc8fca8c9ad08ff7791b5476bfdd 4269562 fastqtl-dbgsym_2.184+dfsg-3_armhf.deb
feaac33f766afebf382f49622a985f40b5efa998a54d2f4e1475f4f9568be7c2 172758 fastqtl_2.184+dfsg-3_armhf.deb
Files:
73a27c016f087de6841fd8340b938778 4269562 debug extra fastqtl-dbgsym_2.184+dfsg-3_armhf.deb
84adb031441767366eb739481a8c2c0a 172758 science optional fastqtl_2.184+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastqtl-dbgsym_2.184+dfsg-3_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 4269562 bytes: control archive=489 bytes.
420 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: fastqtl-dbgsym
Source: fastqtl
Version: 2.184+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4397
Depends: fastqtl (= 2.184+dfsg-3)
Section: debug
Priority: extra
Homepage: http://fastqtl.sourceforge.net/
Description: Debug symbols for fastqtl
Auto-Built-Package: debug-symbols
Build-Ids: ff4d92bcd0db04bc8348478214432160535acb75
drwxr-xr-x root/root 0 2016-06-27 15:06 ./
drwxr-xr-x root/root 0 2016-06-27 15:06 ./usr/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-06-27 15:06 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 4491704 2016-06-27 15:06 ./usr/lib/debug/.build-id/ff/4d92bcd0db04bc8348478214432160535acb75.debug
drwxr-xr-x root/root 0 2016-06-27 15:06 ./usr/share/
drwxr-xr-x root/root 0 2016-06-27 15:06 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-06-27 15:06 ./usr/share/doc/fastqtl-dbgsym -> fastqtl
fastqtl_2.184+dfsg-3_armhf.deb
------------------------------
new debian package, version 2.0.
size 172758 bytes: control archive=1002 bytes.
1070 bytes, 19 lines control
328 bytes, 5 lines md5sums
Package: fastqtl
Version: 2.184+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 567
Depends: libblas3 | libblas.so.3, libboost-iostreams1.58.0, libboost-program-options1.58.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgsl2, libhts1 (>= 1.0), libstdc++6 (>= 5.2), r-mathlib, zlib1g (>= 1:1.1.4)
Suggests: fastqtl-doc
Section: science
Priority: optional
Homepage: http://fastqtl.sourceforge.net/
Description: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs)
which are significantly associated with various molecular phenotypes
(i.e. expression of known genes, cytosine methylation levels, etc).
It performs scans for all possible phenotype-variant pairs in cis
(i.e. variants located within a specific window around a phenotype).
FastQTL implements a new permutation scheme (Beta approximation) to accurately
and rapidly correct for multiple-testing at both the genotype and phenotype
levels.
drwxr-xr-x root/root 0 2016-06-27 15:06 ./
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/
drwxr-xr-x root/root 0 2016-06-27 15:06 ./usr/bin/
-rwxr-xr-x root/root 525880 2016-06-27 15:06 ./usr/bin/fastQTL
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/doc/fastqtl/
-rw-r--r-- root/root 340 2016-06-16 07:51 ./usr/share/doc/fastqtl/changelog.Debian.gz
-rw-r--r-- root/root 38451 2016-06-16 07:46 ./usr/share/doc/fastqtl/copyright
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 111 2016-06-16 07:46 ./usr/share/lintian/overrides/fastqtl
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/man/
drwxr-xr-x root/root 0 2016-06-27 15:05 ./usr/share/man/man1/
-rw-r--r-- root/root 1573 2016-06-27 15:05 ./usr/share/man/man1/fastQTL.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 88180
Build-Time: 933
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 618
Job: fastqtl_2.184+dfsg-3
Machine Architecture: armhf
Package: fastqtl
Package-Time: 1599
Source-Version: 2.184+dfsg-3
Space: 88180
Status: successful
Version: 2.184+dfsg-3
--------------------------------------------------------------------------------
Finished at 20160627-1506
Build needed 00:26:39, 88180k disc space