Raspbian Package Auto-Building

Build log for fastdnaml (1.2.2-13) on armhf

fastdnaml1.2.2-13armhf → 2018-07-11 06:35:17

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| fastdnaml 1.2.2-13 (armhf)                   Wed, 11 Jul 2018 06:33:07 +0000 |
+==============================================================================+

Package: fastdnaml
Version: 1.2.2-13
Source Version: 1.2.2-13
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-987468c4-0520-480a-892b-8386fd930182' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.5 MB in 9s (2539 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'fastdnaml' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/fastdnaml.git
Please use:
git clone https://salsa.debian.org/med-team/fastdnaml.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 79.6 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main fastdnaml 1.2.2-13 (dsc) [2028 B]
Get:2 http://172.17.0.1/private buster-staging/main fastdnaml 1.2.2-13 (tar) [70.0 kB]
Get:3 http://172.17.0.1/private buster-staging/main fastdnaml 1.2.2-13 (diff) [7528 B]
Fetched 79.6 kB in 0s (772 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fastdnaml-KjRe68/fastdnaml-1.2.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fastdnaml-KjRe68' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-k49aXE/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-k49aXE/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-k49aXE/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~)
Filtered Build-Depends: debhelper (>= 11~)
dpkg-deb: building package 'sbuild-build-depends-fastdnaml-dummy' in '/<<BUILDDIR>>/resolver-k49aXE/apt_archive/sbuild-build-depends-fastdnaml-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-fastdnaml-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Sources [489 B]
Get:5 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ Packages [573 B]
Fetched 2395 B in 0s (12.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install fastdnaml build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
  libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
  libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
  libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
  libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
  libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
  libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf
  sbuild-build-depends-fastdnaml-dummy
0 upgraded, 36 newly installed, 0 to remove and 39 not upgraded.
Need to get 20.2 MB/20.8 MB of archives.
After this operation, 68.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-k49aXE/apt_archive ./ sbuild-build-depends-fastdnaml-dummy 0.invalid.0 [852 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.2-2 [832 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 20.2 MB in 7s (2878 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.8.3-2_armhf.deb ...
Unpacking man-db (2.8.3-2) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../05-libmagic-mgc_1%3a5.33-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.33-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../06-libmagic1_1%3a5.33-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.33-3) ...
Selecting previously unselected package file.
Preparing to unpack .../07-file_1%3a5.33-3_armhf.deb ...
Unpacking file (1:5.33-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../08-gettext-base_0.19.8.1-6_armhf.deb ...
Unpacking gettext-base (0.19.8.1-6) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../09-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.15.1-3.1_all.deb ...
Unpacking automake (1:1.15.1-3.1) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.19.8.1-6_all.deb ...
Unpacking autopoint (0.19.8.1-6) ...
Selecting previously unselected package libtool.
Preparing to unpack .../15-libtool_2.4.6-2.1_all.deb ...
Unpacking libtool (2.4.6-2.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../16-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../17-libarchive-zip-perl_1.60-1_all.deb ...
Unpacking libarchive-zip-perl (1.60-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../18-libfile-stripnondeterminism-perl_0.042-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.042-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../19-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_0.042-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.042-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../21-libelf1_0.170-0.5_armhf.deb ...
Unpacking libelf1:armhf (0.170-0.5) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.12-2_armhf.deb ...
Unpacking dwz (0.12-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../23-libglib2.0-0_2.56.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.56.1-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../24-libfreetype6_2.8.1-2_armhf.deb ...
Unpacking libfreetype6:armhf (2.8.1-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../25-libgraphite2-3_1.3.11-2_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.11-2) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../26-libharfbuzz0b_1.8.2-2_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.8.2-2) ...
Selecting previously unselected package libicu-le-hb0:armhf.
Preparing to unpack .../27-libicu-le-hb0_1.0.3+git161113-5_armhf.deb ...
Unpacking libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Selecting previously unselected package libicu60:armhf.
Preparing to unpack .../28-libicu60_60.2-6_armhf.deb ...
Unpacking libicu60:armhf (60.2-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../29-libxml2_2.9.4+dfsg1-7_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../30-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../31-gettext_0.19.8.1-6_armhf.deb ...
Unpacking gettext (0.19.8.1-6) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../32-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../33-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../34-debhelper_11.3.5_all.deb ...
Unpacking debhelper (11.3.5) ...
Selecting previously unselected package sbuild-build-depends-fastdnaml-dummy.
Preparing to unpack .../35-sbuild-build-depends-fastdnaml-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-fastdnaml-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.56.1-2) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.33-3) ...
Setting up libmagic1:armhf (1:5.33-3) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-6) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libharfbuzz0b:armhf (1.8.2-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-3) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2.1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.3.5) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up sbuild-build-depends-fastdnaml-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.8.2-2 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastdnaml-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul  9 07:22:30 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./fastdnaml_1.2.2-13.dsc
dpkg-source: info: extracting fastdnaml in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fastdnaml_1.2.2.orig.tar.gz
dpkg-source: info: unpacking fastdnaml_1.2.2-13.debian.tar.xz
dpkg-source: info: applying Makefile.patch
dpkg-source: info: applying scripts.patch
dpkg-source: info: applying hardening.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-987468c4-0520-480a-892b-8386fd930182
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package fastdnaml
dpkg-buildpackage: info: source version 1.2.2-13
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build fastdnaml-1.2.2
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd source; rm -f *.o fastDNAml)
rm -rf tests
rm -f checkpoint.*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -fr source/fastDNAml
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd source; cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security fastDNAml.c  -o fastDNAml -lm -Wl,-z,relro -Wl,-z,now)
In file included from fastDNAml.c:207:0:
fastDNAml.h:222:10: warning: conflicting types for built-in function 'malloc' [-Wbuiltin-declaration-mismatch]
    char *malloc();
          ^~~~~~
fastDNAml.c: In function 'freeTopol':
fastDNAml.h:228:28: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration]
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:342:5: note: in expansion of macro 'Free'
     Free(tpl->links);
     ^~~~
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:342:5: note: in expansion of macro 'Free'
     Free(tpl->links);
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:342:5: note: in expansion of macro 'Free'
     Free(tpl->links);
     ^~~~
fastDNAml.c: In function 'freeTreeNode':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1533:23: note: in expansion of macro 'Free'
         if (p->x->lv) Free(p->x->lv);
                       ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1533:23: note: in expansion of macro 'Free'
         if (p->x->lv) Free(p->x->lv);
                       ^~~~
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1534:9: note: in expansion of macro 'Free'
         Free(p->x);
         ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1534:9: note: in expansion of macro 'Free'
         Free(p->x);
         ^~~~
fastDNAml.c: In function 'freeTree':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1560:5: note: in expansion of macro 'Free'
     Free(tr->nodep[1]);       /* Free the actual nodes */
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:1560:5: note: in expansion of macro 'Free'
     Free(tr->nodep[1]);       /* Free the actual nodes */
     ^~~~
fastDNAml.c: In function 'setupxarray':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:2028:9: note: in expansion of macro 'Free'
         Free(x);
         ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:2028:9: note: in expansion of macro 'Free'
         Free(x);
         ^~~~
fastDNAml.c: In function 'makenewz':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:2604:5: note: in expansion of macro 'Free'
     Free(abi);
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:2604:5: note: in expansion of macro 'Free'
     Free(abi);
     ^~~~
fastDNAml.c: In function 'readKeyValue':
fastDNAml.c:2886:15: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration]
     string += strlen(key);
               ^~~~~~
fastDNAml.c:2886:15: warning: incompatible implicit declaration of built-in function 'strlen'
fastDNAml.c:2886:15: note: include '<string.h>' or provide a declaration of 'strlen'
fastDNAml.c: In function 'fopen_pid':
fastDNAml.c:3231:47: warning: implicit declaration of function 'getpid'; did you mean 'getxtip'? [-Wimplicit-function-declaration]
     (void) sprintf(name_pid, "%s.%d", filenm, getpid());
                                               ^~~~~~
                                               getxtip
In file included from fastDNAml.c:207:0:
fastDNAml.c: In function 'treeOut':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:3683:5: note: in expansion of macro 'Free'
     Free(treestr);
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:3683:5: note: in expansion of macro 'Free'
     Free(treestr);
     ^~~~
fastDNAml.c: In function 'cmpBestTrees':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:4535:5: note: in expansion of macro 'Free'
     Free(log_f0);
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:4535:5: note: in expansion of macro 'Free'
     Free(log_f0);
     ^~~~
fastDNAml.c: In function 'makeDenovoTree':
fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:4765:5: note: in expansion of macro 'Free'
     Free(enterorder);
     ^~~~
fastDNAml.h:228:28: note: include '<stdlib.h>' or provide a declaration of 'free'
 #define    Free(x)  (void) free((char *) (x))    /* BSD */
                            ^
fastDNAml.c:4765:5: note: in expansion of macro 'Free'
     Free(enterorder);
     ^~~~
fastDNAml.c: At top level:
fastDNAml.c:4775:3: warning: return type defaults to 'int' [-Wimplicit-int]
   main ()
   ^~~~
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_installdirs -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# do nothing
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
cp -a docs/fastDNAml_doc_1.2.txt `pwd`/debian/`dh_listpackages`/usr/share/`dh_listpackages`/fastdnaml_help
# the scripts have to be executable thus mentioning these in debian/install is not enough
cp -a scripts/*                  `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin
chmod 755 `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_installmenu -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastdnaml/usr/bin/fastDNAml was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'fastdnaml' in '../fastdnaml_1.2.2-13_armhf.deb'.
dpkg-deb: building package 'fastdnaml-dbgsym' in '../fastdnaml-dbgsym_1.2.2-13_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../fastdnaml_1.2.2-13_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build fastdnaml-1.2.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-07-11T06:35:15Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


fastdnaml_1.2.2-13_armhf.changes:
---------------------------------

Format: 1.8
Date: Mon, 09 Jul 2018 09:17:57 +0200
Source: fastdnaml
Binary: fastdnaml
Architecture: armhf
Version: 1.2.2-13
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Liubov Chuprikova <chuprikovalv@gmail.com>
Description:
 fastdnaml  - Tool for construction of phylogenetic trees of DNA sequences
Closes: 890787
Changes:
 fastdnaml (1.2.2-13) unstable; urgency=medium
 .
   * Team upload
 .
   [ Andreas Tille ]
   * Add registry entry
 .
   [ Liubov Chuprikova ]
   * Add autopkgtest
     Closes: #890787
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.5
   * debhelper 11
   * Add a call to dh_clean
Checksums-Sha1:
 44fcddd3ab342bb4a4b5d558497e8906aee95dbd 48132 fastdnaml-dbgsym_1.2.2-13_armhf.deb
 f544d76e0a1f20402176bd4b234e0ddfb36fe592 4593 fastdnaml_1.2.2-13_armhf.buildinfo
 9f6cfeff864b948aece1002ea3e3dc0f2461d2bc 54440 fastdnaml_1.2.2-13_armhf.deb
Checksums-Sha256:
 727f6dc20419654686b2bf0230263706488ccc4ea9d3e5959d1a8e1a2b1868b4 48132 fastdnaml-dbgsym_1.2.2-13_armhf.deb
 0f65a8b137cd10406f53b73b0631ed6bfac64811d288406758a6537bff7c9fb6 4593 fastdnaml_1.2.2-13_armhf.buildinfo
 24cb737b400dd01f76efe6b44e9b072801813ff353afb0af2c5c9127bffd4084 54440 fastdnaml_1.2.2-13_armhf.deb
Files:
 bd82c215e4018aee5b2647c88facd0ff 48132 debug optional fastdnaml-dbgsym_1.2.2-13_armhf.deb
 14b30056bb99f18373d8b5d529b45cf4 4593 science optional fastdnaml_1.2.2-13_armhf.buildinfo
 049d94a67618e56369cc0ff5f6ac3078 54440 science optional fastdnaml_1.2.2-13_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


fastdnaml-dbgsym_1.2.2-13_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 48132 bytes: control archive=532 bytes.
     379 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: fastdnaml-dbgsym
 Source: fastdnaml
 Version: 1.2.2-13
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 64
 Depends: fastdnaml (= 1.2.2-13)
 Section: debug
 Priority: optional
 Description: debug symbols for fastdnaml
 Build-Ids: 127ab9edacbf9ba075c9e437c634c25ccab75b01

drwxr-xr-x root/root         0 2018-07-09 07:17 ./
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root     54724 2018-07-09 07:17 ./usr/lib/debug/.build-id/12/7ab9edacbf9ba075c9e437c634c25ccab75b01.debug
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-07-09 07:17 ./usr/share/doc/fastdnaml-dbgsym -> fastdnaml


fastdnaml_1.2.2-13_armhf.deb
----------------------------

 new Debian package, version 2.0.
 size 54440 bytes: control archive=2896 bytes.
     978 bytes,    22 lines      control              
    5174 bytes,    72 lines      md5sums              
     192 bytes,     7 lines   *  postinst             #!/bin/sh
     167 bytes,     5 lines   *  postrm               #!/bin/sh
 Package: fastdnaml
 Version: 1.2.2-13
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 221
 Depends: libc6 (>= 2.7)
 Suggests: phylip
 Section: science
 Priority: optional
 Homepage: ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html
 Description: Tool for construction of phylogenetic trees of DNA sequences
  fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML
  (part of his PHYLIP package).  Users should consult the documentation for
  DNAML before using this program.
  .
  fastDNAml is an attempt to solve the same problem as DNAML, but to do so
  faster and using less memory, so that larger trees and/or more bootstrap
  replicates become tractable.  Much of fastDNAml is merely a recoding of the
  PHYLIP 3.3 DNAML program from PASCAL to C.
  .
  Note that the homepage of this program is not available any more and so
  this program will probably not see any further updates.

drwxr-xr-x root/root         0 2018-07-09 07:17 ./
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/bin/
-rwxr-xr-x root/root     50660 2018-07-09 07:17 ./usr/bin/fastDNAml
-rwxr-xr-x root/root       420 2018-07-09 07:17 ./usr/bin/fastDNAml-util
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/fastdnaml/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/
-rwxr-xr-x root/root       857 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/ae2dnaml
-rwxr-xr-x root/root       216 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/bootstrap
-rwxr-xr-x root/root       163 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/categories
-rwxr-xr-x root/root       140 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/categories_file
-rwxr-xr-x root/root       179 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/checkpoint_summary
-rwxr-xr-x root/root       145 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/clean_checkpoints
-rwxr-xr-x root/root      3504 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/clean_jumbles
-rwxr-xr-x root/root       183 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/dnaml_progress
-rwxr-xr-x root/root      6087 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/fastDNAml_boot
-rwxr-xr-x root/root      3779 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/fastDNAml_loop
-rwxr-xr-x root/root       225 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/frequencies
-rwxr-xr-x root/root       267 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/global
-rwxr-xr-x root/root      1369 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/iterate_rates
-rwxr-xr-x root/root       213 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/jumble
-rwxr-xr-x root/root       172 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/min_info
-rwxr-xr-x root/root       172 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/n_categories
-rwxr-xr-x root/root       124 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/n_files
-rwxr-xr-x root/root       759 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/out.PID
-rwxr-xr-x root/root       162 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/outgroup
-rwxr-xr-x root/root       134 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/printdata
-rwxr-xr-x root/root       133 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/quickadd
-rwxr-xr-x root/root       688 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/restart
-rwxr-xr-x root/root       107 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/scores
-rwxr-xr-x root/root       174 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/transition
-rwxr-xr-x root/root       272 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/treefile
-rwxr-xr-x root/root        75 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/treefile2prolog
-rwxr-xr-x root/root       370 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/trees2NEXUS
-rwxr-xr-x root/root        72 2018-07-09 07:17 ./usr/lib/fastdnaml/bin/trees2prolog
-rwxr-xr-x root/root       136 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/userlengths
-rwxr-xr-x root/root       270 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/usertree
-rwxr-xr-x root/root       270 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/usertrees
-rwxr-xr-x root/root       161 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/weights
-rwxr-xr-x root/root       187 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/weights_categories
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc-base/
-rw-r--r-- root/root       350 2018-07-09 07:17 ./usr/share/doc-base/fastdnaml
-rw-r--r-- root/root       526 2018-07-09 07:17 ./usr/share/doc-base/fastdnaml-scripts
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc/fastdnaml/
-rw-r--r-- root/root       619 2018-07-09 07:17 ./usr/share/doc/fastdnaml/README.Debian
-rw-r--r-- root/root       119 2018-07-09 07:17 ./usr/share/doc/fastdnaml/README.test
-rw-r--r-- root/root      2367 2018-07-09 07:17 ./usr/share/doc/fastdnaml/changelog.Debian.gz
-rw-r--r-- root/root      1272 2018-07-09 07:17 ./usr/share/doc/fastdnaml/copyright
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc/fastdnaml/examples/
-rw-r--r-- root/root      2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5.out
-rw-r--r-- root/root       708 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5.phy
-rw-r--r-- root/root      2189 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5B.out
-rw-r--r-- root/root       717 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5B.phy
-rw-r--r-- root/root      2554 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5C.out
-rw-r--r-- root/root       903 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5C.phy
-rw-r--r-- root/root      2092 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5GRT.out
-rw-r--r-- root/root       796 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5GRT.phy
-rw-r--r-- root/root      2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I.out
-rw-r--r-- root/root       710 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I.phy
-rw-r--r-- root/root      2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I2.out
-rw-r--r-- root/root       800 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I2.phy
-rw-r--r-- root/root      2172 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5J.out
-rw-r--r-- root/root       717 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5J.phy
-rw-r--r-- root/root      2370 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5R.out
-rw-r--r-- root/root       780 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5R.phy
-rw-r--r-- root/root      2161 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5TF.out
-rw-r--r-- root/root       743 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5TF.phy
-rw-r--r-- root/root      1297 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5U.out.gz
-rw-r--r-- root/root       941 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5U.phy
-rw-r--r-- root/root      2157 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5W.out
-rw-r--r-- root/root       851 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5W.phy
-rw-r--r-- root/root      2503 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5WC.out
-rw-r--r-- root/root      1045 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5WC.phy
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/doc/fastdnaml/examples/tests/
-rw-r--r-- root/root       715 2018-07-09 07:17 ./usr/share/doc/fastdnaml/examples/tests/Makefile
-rw-r--r-- root/root        27 2018-07-09 07:17 ./usr/share/doc/fastdnaml/examples/tests/control
-rw-r--r-- root/root      1246 2018-07-09 07:17 ./usr/share/doc/fastdnaml/examples/tests/fastdnaml.data
lrwxrwxrwx root/root         0 2018-07-09 07:17 ./usr/share/doc/fastdnaml/fastDNAml_doc_1.2.txt -> ../../fastdnaml/fastdnaml_help
-rw-r--r-- root/root      6980 2000-01-03 15:58 ./usr/share/doc/fastdnaml/fastDNAml_scripts.txt.gz
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/fastdnaml/
-rw-r--r-- root/root     34150 2000-01-03 15:58 ./usr/share/fastdnaml/fastdnaml_help
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/man/
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/man/man1/
lrwxrwxrwx root/root         0 2018-07-09 07:17 ./usr/share/man/man1/fastDNAml-util.1.gz -> fastDNAml.1.gz
-rw-r--r-- root/root       742 2018-07-09 07:17 ./usr/share/man/man1/fastDNAml.1.gz
drwxr-xr-x root/root         0 2018-07-09 07:17 ./usr/share/menu/
-rw-r--r-- root/root       191 2018-07-09 07:17 ./usr/share/menu/fastdnaml


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 1604
Build-Time: 12
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 101
Job: fastdnaml_1.2.2-13
Machine Architecture: armhf
Package: fastdnaml
Package-Time: 128
Source-Version: 1.2.2-13
Space: 1604
Status: successful
Version: 1.2.2-13
--------------------------------------------------------------------------------
Finished at 2018-07-11T06:35:15Z
Build needed 00:02:08, 1604k disk space