falcon →
1.8.2-1 →
armhf → 2016-11-19 21:12:19
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd.raspbian.org
+==============================================================================+
| falcon 1.8.2-1 (armhf) Sat, 19 Nov 2016 20:56:38 +0000 |
+==============================================================================+
Package: falcon
Version: 1.8.2-1
Source Version: 1.8.2-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-632b4db2-ca6c-43d1-9c92-5f7d03211f0c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9514 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.4 MB]
Fetched 21.0 MB in 25s (827 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'falcon' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/falcon.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/falcon.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3727 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main falcon 1.8.2-1 (dsc) [2188 B]
Get:2 http://172.17.0.1/private stretch-staging/main falcon 1.8.2-1 (tar) [3717 kB]
Get:3 http://172.17.0.1/private stretch-staging/main falcon 1.8.2-1 (diff) [7228 B]
Fetched 3727 kB in 1s (2620 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/falcon-HUoikM/falcon-1.8.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/falcon-HUoikM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0c5ExV/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0c5ExV/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0c5ExV/gpg/trustdb.gpg: trustdb created
gpg: key 5FBC947B34E39F26: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 5FBC947B34E39F26: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 5FBC947B34E39F26: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Packages [431 B]
Fetched 2079 B in 0s (3066 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libffi6 libfuse2 libgnutls30 libhogweed4
libldap-2.4-2 libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules
libsasl2-modules-db libssl1.0.2 libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 60 not upgraded.
Need to get 768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 768 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13152 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-python, rsync, python-all-dev, python-setuptools, python-six, python-networkx (>= 1.7), python-isodate, python-pyparsing, python-decorator, python-rdflib, python-sparqlwrapper, python-html5lib, python-nose
Filtered Build-Depends: debhelper (>= 9), dh-python, rsync, python-all-dev, python-setuptools, python-six, python-networkx (>= 1.7), python-isodate, python-pyparsing, python-decorator, python-rdflib, python-sparqlwrapper, python-html5lib, python-nose
dpkg-deb: building package 'sbuild-build-depends-falcon-dummy' in '/<<BUILDDIR>>/resolver-0c5ExV/apt_archive/sbuild-build-depends-falcon-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-falcon-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Sources [583 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ Packages [662 B]
Fetched 2550 B in 0s (4245 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install falcon build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libfuse2 libgnutls30 libhogweed4 libldap-2.4-2
libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules libsasl2-modules-db
libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpopt0 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2
libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support
po-debconf python python-all python-all-dev python-decorator python-dev
python-html5lib python-isodate python-minimal python-networkx python-nose
python-pkg-resources python-pyparsing python-rdflib python-setuptools
python-six python-sparqlwrapper python2.7 python2.7-dev python2.7-minimal
python3 python3-minimal python3.5 python3.5-minimal rsync
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl python-doc python-tk python-chardet python-genshi
python-lxml python-networkx-doc python-coverage python-nose-doc
python-pyparsing-doc python-rdflib-doc python-rdflib-tools
python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3.5-venv python3.5-doc openssh-client openssh-server
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl python-matplotlib python-numpy
python-pygraphviz | python-pydot python-scipy python-yaml
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpopt0 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2
libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support
po-debconf python python-all python-all-dev python-decorator python-dev
python-html5lib python-isodate python-minimal python-networkx python-nose
python-pkg-resources python-pyparsing python-rdflib python-setuptools
python-six python-sparqlwrapper python2.7 python2.7-dev python2.7-minimal
python3 python3-minimal python3.5 python3.5-minimal rsync
sbuild-build-depends-falcon-dummy
0 upgraded, 72 newly installed, 0 to remove and 60 not upgraded.
Need to get 58.7 MB/58.8 MB of archives.
After this operation, 154 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0c5ExV/apt_archive ./ sbuild-build-depends-falcon-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libpopt0 armhf 1.16-10 [46.2 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-3 [388 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-3 [1174 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-3 [1843 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-3 [279 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.2-6 [565 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.2-6 [1437 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-4 [35.3 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.2-6 [2088 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.2-6 [222 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-4 [18.6 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20160818 [83.0 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-4 [21.7 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.12-3 [913 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-1 [2527 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.2.0-1 [117 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.12-3 [27.5 MB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-2 [19.8 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-2 [958 B]
Get:56 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-2 [940 B]
Get:57 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.12-3 [278 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-2 [1132 B]
Get:59 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-2 [964 B]
Get:60 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-3 [14.4 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf python-html5lib all 0.999-4 [84.0 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf python-isodate all 0.5.4-1 [23.6 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf python-networkx all 1.11-2 [822 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 28.7.1-1 [164 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf python-nose all 1.3.7-2 [132 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf python-rdflib armhf 4.1.2-3 [243 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 28.7.1-1 [218 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf python-sparqlwrapper all 1.6.0-2 [23.1 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf rsync armhf 3.1.2-1 [377 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 58.7 MB in 18s (3246 kB/s)
Selecting previously unselected package libpopt0:armhf.
(Reading database ... 13152 files and directories currently installed.)
Preparing to unpack .../00-libpopt0_1.16-10_armhf.deb ...
Unpacking libpopt0:armhf (1.16-10) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../01-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../02-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../03-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../06-libpython2.7-minimal_2.7.12-3_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.12-3) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../07-python2.7-minimal_2.7.12-3_armhf.deb ...
Unpacking python2.7-minimal (2.7.12-3) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../08-python-minimal_2.7.11-2_armhf.deb ...
Unpacking python-minimal (2.7.11-2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../09-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.0-1) ...
Selecting previously unselected package libreadline6:armhf.
Preparing to unpack .../11-libreadline6_6.3-9_armhf.deb ...
Unpacking libreadline6:armhf (6.3-9) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../12-libpython2.7-stdlib_2.7.12-3_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.12-3) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../13-python2.7_2.7.12-3_armhf.deb ...
Unpacking python2.7 (2.7.12-3) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../14-libpython-stdlib_2.7.11-2_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.11-2) ...
Setting up libpython2.7-minimal:armhf (2.7.12-3) ...
Setting up python2.7-minimal (2.7.12-3) ...
Setting up python-minimal (2.7.11-2) ...
Selecting previously unselected package python.
(Reading database ... 14544 files and directories currently installed.)
Preparing to unpack .../0-python_2.7.11-2_armhf.deb ...
Unpacking python (2.7.11-2) ...
Selecting previously unselected package libpython3.5-minimal:armhf.
Preparing to unpack .../1-libpython3.5-minimal_3.5.2-6_armhf.deb ...
Unpacking libpython3.5-minimal:armhf (3.5.2-6) ...
Selecting previously unselected package python3.5-minimal.
Preparing to unpack .../2-python3.5-minimal_3.5.2-6_armhf.deb ...
Unpacking python3.5-minimal (3.5.2-6) ...
Selecting previously unselected package python3-minimal.
Preparing to unpack .../3-python3-minimal_3.5.1-4_armhf.deb ...
Unpacking python3-minimal (3.5.1-4) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../4-libmpdec2_2.4.2-1_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-1) ...
Selecting previously unselected package libpython3.5-stdlib:armhf.
Preparing to unpack .../5-libpython3.5-stdlib_3.5.2-6_armhf.deb ...
Unpacking libpython3.5-stdlib:armhf (3.5.2-6) ...
Selecting previously unselected package python3.5.
Preparing to unpack .../6-python3.5_3.5.2-6_armhf.deb ...
Unpacking python3.5 (3.5.2-6) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../7-libpython3-stdlib_3.5.1-4_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.5.1-4) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../8-dh-python_2.20160818_all.deb ...
Unpacking dh-python (2.20160818) ...
Setting up libpython3.5-minimal:armhf (3.5.2-6) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up python3.5-minimal (3.5.2-6) ...
Setting up python3-minimal (3.5.1-4) ...
Selecting previously unselected package python3.
(Reading database ... 15518 files and directories currently installed.)
Preparing to unpack .../00-python3_3.5.1-4_armhf.deb ...
Unpacking python3 (3.5.1-4) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.29-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../02-libmagic1_1%3a5.29-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.29-1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.29-1_armhf.deb ...
Unpacking file (1:5.29-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libpython2.7:armhf.
Preparing to unpack .../05-libpython2.7_2.7.12-3_armhf.deb ...
Unpacking libpython2.7:armhf (2.7.12-3) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../06-libicu57_57.1-4_armhf.deb ...
Unpacking libicu57:armhf (57.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../07-libxml2_2.9.4+dfsg1-2.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2.1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../08-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../09-m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../10-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../11-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../12-automake_1%3a1.15-5_all.deb ...
Unpacking automake (1:1.15-5) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../13-autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../14-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../15-dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../16-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../17-libfile-stripnondeterminism-perl_0.028-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.028-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_0.028-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.028-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../20-libglib2.0-0_2.50.2-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.2-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../21-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../22-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../23-gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../24-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../25-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../26-debhelper_10.2.2_all.deb ...
Unpacking debhelper (10.2.2) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../27-libexpat1-dev_2.2.0-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.0-1) ...
Selecting previously unselected package libpython2.7-dev:armhf.
Preparing to unpack .../28-libpython2.7-dev_2.7.12-3_armhf.deb ...
Unpacking libpython2.7-dev:armhf (2.7.12-3) ...
Selecting previously unselected package libpython-dev:armhf.
Preparing to unpack .../29-libpython-dev_2.7.11-2_armhf.deb ...
Unpacking libpython-dev:armhf (2.7.11-2) ...
Selecting previously unselected package libpython-all-dev:armhf.
Preparing to unpack .../30-libpython-all-dev_2.7.11-2_armhf.deb ...
Unpacking libpython-all-dev:armhf (2.7.11-2) ...
Selecting previously unselected package python-all.
Preparing to unpack .../31-python-all_2.7.11-2_armhf.deb ...
Unpacking python-all (2.7.11-2) ...
Selecting previously unselected package python2.7-dev.
Preparing to unpack .../32-python2.7-dev_2.7.12-3_armhf.deb ...
Unpacking python2.7-dev (2.7.12-3) ...
Selecting previously unselected package python-dev.
Preparing to unpack .../33-python-dev_2.7.11-2_armhf.deb ...
Unpacking python-dev (2.7.11-2) ...
Selecting previously unselected package python-all-dev.
Preparing to unpack .../34-python-all-dev_2.7.11-2_armhf.deb ...
Unpacking python-all-dev (2.7.11-2) ...
Selecting previously unselected package python-decorator.
Preparing to unpack .../35-python-decorator_4.0.6-1_all.deb ...
Unpacking python-decorator (4.0.6-1) ...
Selecting previously unselected package python-six.
Preparing to unpack .../36-python-six_1.10.0-3_all.deb ...
Unpacking python-six (1.10.0-3) ...
Selecting previously unselected package python-html5lib.
Preparing to unpack .../37-python-html5lib_0.999-4_all.deb ...
Unpacking python-html5lib (0.999-4) ...
Selecting previously unselected package python-isodate.
Preparing to unpack .../38-python-isodate_0.5.4-1_all.deb ...
Unpacking python-isodate (0.5.4-1) ...
Selecting previously unselected package python-networkx.
Preparing to unpack .../39-python-networkx_1.11-2_all.deb ...
Unpacking python-networkx (1.11-2) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../40-python-pkg-resources_28.7.1-1_all.deb ...
Unpacking python-pkg-resources (28.7.1-1) ...
Selecting previously unselected package python-nose.
Preparing to unpack .../41-python-nose_1.3.7-2_all.deb ...
Unpacking python-nose (1.3.7-2) ...
Selecting previously unselected package python-pyparsing.
Preparing to unpack .../42-python-pyparsing_2.1.10+dfsg1-1_all.deb ...
Unpacking python-pyparsing (2.1.10+dfsg1-1) ...
Selecting previously unselected package python-rdflib.
Preparing to unpack .../43-python-rdflib_4.1.2-3_armhf.deb ...
Unpacking python-rdflib (4.1.2-3) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../44-python-setuptools_28.7.1-1_all.deb ...
Unpacking python-setuptools (28.7.1-1) ...
Selecting previously unselected package python-sparqlwrapper.
Preparing to unpack .../45-python-sparqlwrapper_1.6.0-2_all.deb ...
Unpacking python-sparqlwrapper (1.6.0-2) ...
Selecting previously unselected package rsync.
Preparing to unpack .../46-rsync_3.1.2-1_armhf.deb ...
Unpacking rsync (3.1.2-1) ...
Selecting previously unselected package sbuild-build-depends-falcon-dummy.
Preparing to unpack .../47-sbuild-build-depends-falcon-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-falcon-dummy (0.invalid.0) ...
Setting up libpopt0:armhf (1.16-10) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up groff-base (1.22.3-8) ...
Setting up libglib2.0-0:armhf (2.50.2-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-4) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libmagic-mgc (1:5.29-1) ...
Setting up libmagic1:armhf (1:5.29-1) ...
Setting up rsync (3.1.2-1) ...
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Created symlink /etc/systemd/system/multi-user.target.wants/rsync.service -> /lib/systemd/system/rsync.service.
Setting up libcroco3:armhf (0.6.11-2) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Processing triggers for systemd (231-9) ...
Setting up libexpat1-dev:armhf (2.2.0-1) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up libreadline6:armhf (6.3-9) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libpython3.5-stdlib:armhf (3.5.2-6) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-stdlib:armhf (2.7.12-3) ...
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.2-6) ...
Setting up libpython3-stdlib:armhf (3.5.1-4) ...
Setting up po-debconf (1.0.20) ...
Setting up python2.7 (2.7.12-3) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up libpython2.7:armhf (2.7.12-3) ...
Setting up libpython2.7-dev:armhf (2.7.12-3) ...
Setting up python2.7-dev (2.7.12-3) ...
Setting up python (2.7.11-2) ...
Setting up python-pyparsing (2.1.10+dfsg1-1) ...
Setting up libpython-dev:armhf (2.7.11-2) ...
Setting up python-dev (2.7.11-2) ...
Setting up libpython-all-dev:armhf (2.7.11-2) ...
Setting up python-pkg-resources (28.7.1-1) ...
Setting up python-six (1.10.0-3) ...
Setting up python-isodate (0.5.4-1) ...
Setting up python-decorator (4.0.6-1) ...
Setting up python-html5lib (0.999-4) ...
Setting up python-nose (1.3.7-2) ...
Setting up python-all (2.7.11-2) ...
Setting up python-setuptools (28.7.1-1) ...
Setting up python-networkx (1.11-2) ...
Setting up python-rdflib (4.1.2-3) ...
Setting up python-sparqlwrapper (1.6.0-2) ...
Setting up python-all-dev (2.7.11-2) ...
Setting up dh-python (2.20160818) ...
Setting up dh-autoreconf (12) ...
Setting up python3 (3.5.1-4) ...
Setting up debhelper (10.2.2) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up sbuild-build-depends-falcon-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27-9 dpkg-dev_1.18.10 g++-6_6.2.0-6+rpi1 gcc-6_6.2.0-6+rpi1 libc6-dev_2.24-5+rpi1 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3.1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.6+rpi1 base-passwd_3.5.40 bash_4.4-1 binutils_2.27-9 bsdmainutils_9.0.12 bsdutils_1:2.28.2-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.2.0-6+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dirmngr_2.1.15-4 dmsetup_2:1.02.133-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.0-6+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.0-6+rpi1 gcc-6-base_6.2.0-6+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.15-4 gnupg-agent_2.1.15-4 gnupg-l10n_2.1.15-4 gpgv_2.1.15-4 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-5 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-6+rpi1 libassuan0_2.4.3-1 libatomic1_6.2.0-6+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblkid1_2.28.2-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-5+rpi1 libc-dev-bin_2.24-5+rpi1 libc6_2.24-5+rpi1 libc6-dev_2.24-5+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-6+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-5 libdb5.3_5.3.28-12 libdbus-1-3_1.10.12-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.133-1 libdpkg-perl_1.18.10 libdrm2_2.4.71-1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.28.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-6+rpi1 libgcc1_1:6.2.0-6+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libglib2.0-0_2.50.2-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.5-2 libgomp1_6.2.0-6+rpi1 libgpg-error0_1.24-1 libhogweed4_3.3-1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b3 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-1 libmagic1_1:5.29-1 libmount1_2.28.2-1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.3-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libpopt0_1.16-10 libprocps6_2:3.3.12-2 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-3 libpython2.7-dev_2.7.12-3 libpython2.7-minimal_2.7.12-3 libpython2.7-stdlib_2.7.12-3 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.2-6 libpython3.5-stdlib_3.5.2-6 libreadline6_6.3-9 libreadline7_7.0-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28.2-1 libsqlite3-0_3.14.2-1 libss2_1.43.3-1 libssl1.0.2_1.0.2j-1 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 libsystemd0_231-9 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.0-6+rpi1 libudev1_231-9 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.2-1 multiarch-support_2.24-5+rpi1 nano_2.7.0-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-6 po-debconf_1.0.20 procps_2:3.3.12-2 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-decorator_4.0.6-1 python-dev_2.7.11-2 python-html5lib_0.999-4 python-isodate_0.5.4-1 python-minimal_2.7.11-2 python-networkx_1.11-2 python-nose_1.3.7-2 python-pkg-resources_28.7.1-1 python-pyparsing_2.1.10+dfsg1-1 python-rdflib_4.1.2-3 python-setuptools_28.7.1-1 python-six_1.10.0-3 python-sparqlwrapper_1.6.0-2 python2.7_2.7.12-3 python2.7-dev_2.7.12-3 python2.7-minimal_2.7.12-3 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-6 python3.5-minimal_3.5.2-6 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 rsync_3.1.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-falcon-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_231-9 systemd-sysv_231-9 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016h-1 udev_231-9 util-linux_2.28.2-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 14 07:30:19 2016 UTC
gpgv: using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./falcon_1.8.2-1.dsc
dpkg-source: info: extracting falcon in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking falcon_1.8.2.orig.tar.xz
dpkg-source: info: unpacking falcon_1.8.2-1.debian.tar.xz
dpkg-source: info: applying build-system.patch
dpkg-source: info: applying rdflib.patch
dpkg-source: info: applying versioned-deps.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-632b4db2-ca6c-43d1-9c92-5f7d03211f0c
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package falcon
dpkg-buildpackage: info: source version 1.8.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build falcon-1.8.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f -r /<<PKGBUILDDIR>>/inst
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p \
/<<PKGBUILDDIR>>/inst/bin \
/<<PKGBUILDDIR>>/inst/include \
/<<PKGBUILDDIR>>/inst/lib \
/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages
/usr/bin/make all
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C ./FALCON-make/ all
make[3]: Entering directory '/<<PKGBUILDDIR>>/FALCON-make'
/usr/bin/make show
make[4]: Entering directory '/<<PKGBUILDDIR>>/FALCON-make'
mkdir -p /<<PKGBUILDDIR>>/inst/bin
which python
/usr/bin/python
echo "PYTHONUSERBASE="
PYTHONUSERBASE=
python -c 'import site; print site.USER_BASE'
/sbuild-nonexistent/.local
echo "FALCON_PIP_EDIT=--edit"
FALCON_PIP_EDIT=--edit
echo "FALCON_PIP_USER="
FALCON_PIP_USER=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-make'
/usr/bin/make install
make[4]: Entering directory '/<<PKGBUILDDIR>>/FALCON-make'
/usr/bin/make -C /<<PKGBUILDDIR>>/DAZZ_DB all
make[5]: Entering directory '/<<PKGBUILDDIR>>/DAZZ_DB'
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -c -o DB.o DB.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -c -o QV.o QV.c
QV.c: In function ‘Build_Table’:
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint64 symbol = (uint64) (node->lft);
^
QV.c: In function ‘Huffman’:
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
node[value].lft = (HTree *) (uint64) i;
^
ar -rcv libdazzdb.a DB.o QV.o
a - DB.o
a - QV.o
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro fasta2DB.c libdazzdb.a -lm -o fasta2DB
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DB2fasta.c libdazzdb.a -lm -o DB2fasta
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBsplit.c libdazzdb.a -lm -o DBsplit
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBdust.c libdazzdb.a -lm -o DBdust
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro Catrack.c libdazzdb.a -lm -o Catrack
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBshow.c libdazzdb.a -lm -o DBshow
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBstats.c libdazzdb.a -lm -o DBstats
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBrm.c libdazzdb.a -lm -o DBrm
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro simulator.c libdazzdb.a -lm -o simulator
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro fasta2DAM.c libdazzdb.a -lm -o fasta2DAM
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DAM2fasta.c libdazzdb.a -lm -o DAM2fasta
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro DBdump.c libdazzdb.a -lm -o DBdump
DBdump.c: In function ‘main’:
DBdump.c:678:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=]
printf("H %ld %s\n",strlen(header),header);
^
DBdump.c:686:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=]
printf("H %ld %s\n",strlen(flist[map]),flist[map]);
^
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-z,relro rangen.c libdazzdb.a -lm -o rangen
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DAZZ_DB'
PREFIX=/<<PKGBUILDDIR>>/inst /usr/bin/make -C /<<PKGBUILDDIR>>/DAZZ_DB install
make[5]: Entering directory '/<<PKGBUILDDIR>>/DAZZ_DB'
rsync -av fasta2DB DB2fasta DBsplit DBdust Catrack DBshow DBstats DBrm simulator fasta2DAM DAM2fasta DBdump rangen /<<PKGBUILDDIR>>/inst/bin
sending incremental file list
Catrack
DAM2fasta
DB2fasta
DBdump
DBdust
DBrm
DBshow
DBsplit
DBstats
fasta2DAM
fasta2DB
rangen
simulator
sent 2,426,142 bytes received 263 bytes 4,852,810.00 bytes/sec
total size is 2,424,728 speedup is 1.00
rsync -av libdazzdb.* /<<PKGBUILDDIR>>/inst/lib
sending incremental file list
libdazzdb.a
sent 209,214 bytes received 35 bytes 418,498.00 bytes/sec
total size is 209,060 speedup is 1.00
rsync -av /<<PKGBUILDDIR>>/DAZZ_DB/DB.h /<<PKGBUILDDIR>>/DAZZ_DB/QV.h /<<PKGBUILDDIR>>/inst/include
sending incremental file list
DB.h
QV.h
sent 25,536 bytes received 54 bytes 51,180.00 bytes/sec
total size is 25,385 speedup is 0.99
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DAZZ_DB'
/usr/bin/make -C /<<PKGBUILDDIR>>/DALIGNER all
make[5]: Entering directory '/<<PKGBUILDDIR>>/DALIGNER'
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o filter.o filter.c
filter.c: In function ‘Sort_Kmers’:
filter.c:722:34: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘unsigned int’ [-Wformat=]
printf("\n sizeof(KmerPos)=%ld", sizeof(KmerPos));
^
filter.c:727:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘unsigned int’ [-Wformat=]
printf("\n sizeof(KmerPos)*(kmers+1)=%ld", (sizeof(KmerPos)*(kmers+1)));
^
filter.c:739:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘unsigned int’ [-Wformat=]
if (VERBOSE) printf("\n Allocated %d of %ld (%lu bytes) at %p", (kmers+1), sizeof(KmerPos), (sizeof(KmerPos)*(kmers+1)), (void*)trg);
^
filter.c:739:50: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘unsigned int’ [-Wformat=]
if (VERBOSE) printf("\n Allocated %d of %ld (%lu bytes) at %p", (kmers+1), sizeof(KmerPos), (sizeof(KmerPos)*(kmers+1)), (void*)trg);
^
filter.c: In function ‘Entwine’:
filter.c:1228:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *ktrace = tbuf->trace + (uint64) (kpath->trace);
^
filter.c:1229:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *jtrace = tbuf->trace + (uint64) (jpath->trace);
^
filter.c: In function ‘Fusion’:
filter.c:1354:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path1->trace);
^
filter.c:1362:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path2->trace);
^
filter.c: In function ‘report_thread’:
filter.c:1789:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
amatch[novla].trace = (void *) (tbuf->top);
^
filter.c:1810:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
bmatch[novlb].trace = (void *) (tbuf->top);
^
filter.c:1885:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ovla->path.trace = tbuf->trace + (uint64) (ovla->path.trace);
^
filter.c:1892:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ovlb->path.trace = tbuf->trace + (uint64) (ovlb->path.trace);
^
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o align.o align.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o daligner.o daligner.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB daligner.o filter.o align.o -ldazzdb -lm -lpthread -o daligner
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o HPC.daligner.o HPC.daligner.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB HPC.daligner.o align.o -ldazzdb -lm -lpthread -o HPC.daligner
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAsort.o LAsort.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAsort.o align.o -ldazzdb -lm -lpthread -o LAsort
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAmerge.o LAmerge.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAmerge.o align.o -ldazzdb -lm -lpthread -o LAmerge
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAsplit.o LAsplit.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAsplit.o align.o -ldazzdb -lm -lpthread -o LAsplit
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAcat.o LAcat.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAcat.o align.o -ldazzdb -lm -lpthread -o LAcat
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAshow.o LAshow.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAshow.o align.o -ldazzdb -lm -lpthread -o LAshow
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAdump.o LAdump.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAdump.o align.o -ldazzdb -lm -lpthread -o LAdump
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAcheck.o LAcheck.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAcheck.o align.o -ldazzdb -lm -lpthread -o LAcheck
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LAindex.o LAindex.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LAindex.o align.o -ldazzdb -lm -lpthread -o LAindex
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o filter_p.o filter_p.c
In file included from filter_p.c:2:0:
filter.c: In function ‘Sort_Kmers’:
filter.c:722:34: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘unsigned int’ [-Wformat=]
printf("\n sizeof(KmerPos)=%ld", sizeof(KmerPos));
^
filter.c:727:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘unsigned int’ [-Wformat=]
printf("\n sizeof(KmerPos)*(kmers+1)=%ld", (sizeof(KmerPos)*(kmers+1)));
^
filter.c:739:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘unsigned int’ [-Wformat=]
if (VERBOSE) printf("\n Allocated %d of %ld (%lu bytes) at %p", (kmers+1), sizeof(KmerPos), (sizeof(KmerPos)*(kmers+1)), (void*)trg);
^
filter.c:739:50: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘unsigned int’ [-Wformat=]
if (VERBOSE) printf("\n Allocated %d of %ld (%lu bytes) at %p", (kmers+1), sizeof(KmerPos), (sizeof(KmerPos)*(kmers+1)), (void*)trg);
^
In file included from filter_p.c:2:0:
filter.c: In function ‘Entwine’:
filter.c:1228:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *ktrace = tbuf->trace + (uint64) (kpath->trace);
^
filter.c:1229:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *jtrace = tbuf->trace + (uint64) (jpath->trace);
^
filter.c: In function ‘Fusion’:
filter.c:1354:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path1->trace);
^
filter.c:1362:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path2->trace);
^
filter.c: In function ‘report_thread’:
filter.c:1789:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
amatch[novla].trace = (void *) (tbuf->top);
^
filter.c:1810:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
bmatch[novlb].trace = (void *) (tbuf->top);
^
filter.c:1885:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ovla->path.trace = tbuf->trace + (uint64) (ovla->path.trace);
^
filter.c:1892:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ovlb->path.trace = tbuf->trace + (uint64) (ovlb->path.trace);
^
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o daligner_p.o daligner_p.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB daligner_p.o filter_p.o align.o -ldazzdb -lm -lpthread -o daligner_p
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LA4Falcon.o LA4Falcon.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LA4Falcon.o align.o -ldazzdb -lm -lpthread -o LA4Falcon
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o LA4Ice.o LA4Ice.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB LA4Ice.o align.o -ldazzdb -lm -lpthread -o LA4Ice
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB -I/include -c -o DB2Falcon.o DB2Falcon.c
gcc -Wl,-z,relro -L/<<PKGBUILDDIR>>/DALIGNER/../DAZZ_DB DB2Falcon.o align.o -ldazzdb -lm -lpthread -o DB2Falcon
rm daligner_p.o LAshow.o LAcat.o LA4Falcon.o LAdump.o LAsplit.o LAmerge.o LAcheck.o daligner.o HPC.daligner.o LAindex.o DB2Falcon.o LA4Ice.o LAsort.o
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DALIGNER'
PREFIX=/<<PKGBUILDDIR>>/inst /usr/bin/make -C /<<PKGBUILDDIR>>/DALIGNER install
make[5]: Entering directory '/<<PKGBUILDDIR>>/DALIGNER'
rsync -av daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex daligner_p LA4Falcon LA4Ice DB2Falcon /<<PKGBUILDDIR>>/inst/bin
sending incremental file list
DB2Falcon
HPC.daligner
LA4Falcon
LA4Ice
LAcat
LAcheck
LAdump
LAindex
LAmerge
LAshow
LAsort
LAsplit
daligner
daligner_p
sent 7,121,015 bytes received 282 bytes 14,242,594.00 bytes/sec
total size is 7,118,400 speedup is 1.00
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DALIGNER'
/usr/bin/make -C /<<PKGBUILDDIR>>/DAMASKER all
make[5]: Entering directory '/<<PKGBUILDDIR>>/DAMASKER'
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tandem.o tandem.c
tandem.c: In function ‘Entwine’:
tandem.c:577:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *ktrace = tbuf->trace + (uint64) (kpath->trace);
^
tandem.c:578:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
uint16 *jtrace = tbuf->trace + (uint64) (jpath->trace);
^
tandem.c: In function ‘Fusion’:
tandem.c:703:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path1->trace);
^
tandem.c:711:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint16 *t = tbuf->trace + (uint64) (path2->trace);
^
tandem.c: In function ‘report_thread’:
tandem.c:1020:45: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
amatch[novla].trace = (void *) (tbuf->top);
^
tandem.c:1101:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ovla->path.trace = tbuf->trace + (uint64) (ovla->path.trace);
^
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o DB.o DB.c
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o QV.o QV.c
QV.c: In function ‘Build_Table’:
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint64 symbol = (uint64) (node->lft);
^
QV.c: In function ‘Huffman’:
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
node[value].lft = (HTree *) (uint64) i;
^
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o datander.o datander.c
gcc -Wl,-z,relro datander.o tandem.o align.o DB.o QV.o -lm -lpthread -o datander
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TANmask.o TANmask.c
gcc -Wl,-z,relro TANmask.o align.o DB.o QV.o -lm -lpthread -o TANmask
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o REPmask.o REPmask.c
gcc -Wl,-z,relro REPmask.o align.o DB.o QV.o -lm -lpthread -o REPmask
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o HPC.TANmask.o HPC.TANmask.c
HPC.TANmask.c: In function ‘main’:
HPC.TANmask.c:296:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for (k = i; k < j; k++)
^~~
HPC.TANmask.c:308:11: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’
if (DON)
^~
HPC.TANmask.c:433:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for (k = 0; k < NTHREADS; k++)
^~~
HPC.TANmask.c:438:11: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’
fprintf(out,"\n");
^~~~~~~
gcc -Wl,-z,relro HPC.TANmask.o align.o DB.o QV.o -lm -lpthread -o HPC.TANmask
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o HPC.REPmask.o HPC.REPmask.c
gcc -Wl,-z,relro HPC.REPmask.o align.o DB.o QV.o -lm -lpthread -o HPC.REPmask
rm TANmask.o datander.o HPC.REPmask.o HPC.TANmask.o REPmask.o
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DAMASKER'
PREFIX=/<<PKGBUILDDIR>>/inst /usr/bin/make -C /<<PKGBUILDDIR>>/DAMASKER install
make[5]: Entering directory '/<<PKGBUILDDIR>>/DAMASKER'
rsync -av datander TANmask REPmask HPC.TANmask HPC.REPmask /<<PKGBUILDDIR>>/inst/bin
sending incremental file list
HPC.REPmask
HPC.TANmask
REPmask
TANmask
datander
sent 655,789 bytes received 111 bytes 1,311,800.00 bytes/sec
total size is 655,284 speedup is 1.00
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DAMASKER'
/usr/bin/make -C /<<PKGBUILDDIR>>/DEXTRACTOR all
make[5]: Entering directory '/<<PKGBUILDDIR>>/DEXTRACTOR'
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dexta.o dexta.c
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o DB.o DB.c
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o QV.o QV.c
QV.c: In function ‘Build_Table’:
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
{ uint64 symbol = (uint64) (node->lft);
^
QV.c: In function ‘Huffman’:
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
node[value].lft = (HTree *) (uint64) i;
^
gcc -Wl,-z,relro dexta.o DB.o QV.o -lm -lpthread -o dexta
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o undexta.o undexta.c
gcc -Wl,-z,relro undexta.o DB.o QV.o -lm -lpthread -o undexta
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DEXTRACTOR'
PREFIX=/<<PKGBUILDDIR>>/inst /usr/bin/make -C /<<PKGBUILDDIR>>/DEXTRACTOR install
make[5]: Entering directory '/<<PKGBUILDDIR>>/DEXTRACTOR'
rsync -av dexta undexta /<<PKGBUILDDIR>>/inst/bin
sending incremental file list
dexta
undexta
sent 119,374 bytes received 54 bytes 238,856.00 bytes/sec
total size is 119,192 speedup is 1.00
make[5]: Leaving directory '/<<PKGBUILDDIR>>/DEXTRACTOR'
cd /<<PKGBUILDDIR>>/pypeFLOW; python setup.py install --prefix /<<PKGBUILDDIR>>/inst
running install
running bdist_egg
running egg_info
creating pypeflow.egg-info
writing requirements to pypeflow.egg-info/requires.txt
writing pypeflow.egg-info/PKG-INFO
writing top-level names to pypeflow.egg-info/top_level.txt
writing dependency_links to pypeflow.egg-info/dependency_links.txt
writing entry points to pypeflow.egg-info/entry_points.txt
writing manifest file 'pypeflow.egg-info/SOURCES.txt'
reading manifest file 'pypeflow.egg-info/SOURCES.txt'
writing manifest file 'pypeflow.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-armv7l/egg
running install_lib
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/pwatcher_bridge.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/__init__.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/data.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/do_support.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/simple_pwatcher_bridge.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/controller.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/do_task.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/util.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/task.py -> build/lib.linux-armv7l-2.7/pypeflow
copying ./pypeflow/common.py -> build/lib.linux-armv7l-2.7/pypeflow
creating build/lib.linux-armv7l-2.7/pwatcher
copying ./pwatcher/__init__.py -> build/lib.linux-armv7l-2.7/pwatcher
copying ./pwatcher/fs_based.py -> build/lib.linux-armv7l-2.7/pwatcher
copying ./pwatcher/blocking.py -> build/lib.linux-armv7l-2.7/pwatcher
copying ./pwatcher/network_based.py -> build/lib.linux-armv7l-2.7/pwatcher
creating build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/fs_heartbeat.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/__init__.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/pypeflow_example.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/network_heartbeat.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/pwatcher.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/query_server.py -> build/lib.linux-armv7l-2.7/pwatcher/mains
copying ./pwatcher/mains/job_start.sh -> build/lib.linux-armv7l-2.7/pwatcher/mains
creating build/bdist.linux-armv7l
creating build/bdist.linux-armv7l/egg
creating build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/pwatcher_bridge.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/__init__.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/data.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/do_support.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/simple_pwatcher_bridge.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/controller.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/do_task.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/util.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/task.py -> build/bdist.linux-armv7l/egg/pypeflow
copying build/lib.linux-armv7l-2.7/pypeflow/common.py -> build/bdist.linux-armv7l/egg/pypeflow
creating build/bdist.linux-armv7l/egg/pwatcher
copying build/lib.linux-armv7l-2.7/pwatcher/__init__.py -> build/bdist.linux-armv7l/egg/pwatcher
copying build/lib.linux-armv7l-2.7/pwatcher/fs_based.py -> build/bdist.linux-armv7l/egg/pwatcher
copying build/lib.linux-armv7l-2.7/pwatcher/blocking.py -> build/bdist.linux-armv7l/egg/pwatcher
copying build/lib.linux-armv7l-2.7/pwatcher/network_based.py -> build/bdist.linux-armv7l/egg/pwatcher
creating build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/fs_heartbeat.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/__init__.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/pypeflow_example.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/network_heartbeat.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/pwatcher.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/query_server.py -> build/bdist.linux-armv7l/egg/pwatcher/mains
copying build/lib.linux-armv7l-2.7/pwatcher/mains/job_start.sh -> build/bdist.linux-armv7l/egg/pwatcher/mains
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/pwatcher_bridge.py to pwatcher_bridge.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/data.py to data.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/do_support.py to do_support.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/simple_pwatcher_bridge.py to simple_pwatcher_bridge.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/controller.py to controller.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/do_task.py to do_task.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/util.py to util.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/task.py to task.pyc
byte-compiling build/bdist.linux-armv7l/egg/pypeflow/common.py to common.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/fs_based.py to fs_based.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/blocking.py to blocking.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/network_based.py to network_based.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/fs_heartbeat.py to fs_heartbeat.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/pypeflow_example.py to pypeflow_example.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/network_heartbeat.py to network_heartbeat.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/pwatcher.py to pwatcher.pyc
byte-compiling build/bdist.linux-armv7l/egg/pwatcher/mains/query_server.py to query_server.pyc
creating build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/PKG-INFO -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/SOURCES.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/dependency_links.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/entry_points.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/not-zip-safe -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/requires.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying pypeflow.egg-info/top_level.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
creating dist
creating 'dist/pypeflow-0.1.1-py2.7.egg' and adding 'build/bdist.linux-armv7l/egg' to it
removing 'build/bdist.linux-armv7l/egg' (and everything under it)
Creating /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/site.py
Processing pypeflow-0.1.1-py2.7.egg
creating /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg
Extracting pypeflow-0.1.1-py2.7.egg to /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages
Adding pypeflow 0.1.1 to easy-install.pth file
Installing pwatcher-pypeflow-example script to /<<PKGBUILDDIR>>/inst/bin
Installing heartbeat-wrapper script to /<<PKGBUILDDIR>>/inst/bin
Installing pwatcher-main script to /<<PKGBUILDDIR>>/inst/bin
Installed /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg
Processing dependencies for pypeflow==0.1.1
Searching for networkx==1.11
Best match: networkx 1.11
Adding networkx 1.11 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Searching for html5lib==0.999
Best match: html5lib 0.999
Adding html5lib 0.999 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Searching for rdflib==4.1.2
Best match: rdflib 4.1.2
Adding rdflib 4.1.2 to easy-install.pth file
Installing rdf2dot script to /<<PKGBUILDDIR>>/inst/bin
Installing csv2rdf script to /<<PKGBUILDDIR>>/inst/bin
Installing rdfpipe script to /<<PKGBUILDDIR>>/inst/bin
Installing rdfs2dot script to /<<PKGBUILDDIR>>/inst/bin
Installing rdfgraphisomorphism script to /<<PKGBUILDDIR>>/inst/bin
Using /usr/lib/python2.7/dist-packages
Searching for SPARQLWrapper==1.6.0
Best match: SPARQLWrapper 1.6.0
Adding SPARQLWrapper 1.6.0 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Searching for pyparsing==2.1.10
Best match: pyparsing 2.1.10
Adding pyparsing 2.1.10 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Searching for isodate==0.5.4
Best match: isodate 0.5.4
Adding isodate 0.5.4 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Finished processing dependencies for pypeflow==0.1.1
cd /<<PKGBUILDDIR>>/FALCON; python setup.py install --prefix /<<PKGBUILDDIR>>/inst
/bin/sh: 1: git: not found
running install
running bdist_egg
running egg_info
creating falcon_kit.egg-info
writing requirements to falcon_kit.egg-info/requires.txt
writing falcon_kit.egg-info/PKG-INFO
writing top-level names to falcon_kit.egg-info/top_level.txt
writing dependency_links to falcon_kit.egg-info/dependency_links.txt
writing entry points to falcon_kit.egg-info/entry_points.txt
writing manifest file 'falcon_kit.egg-info/SOURCES.txt'
reading manifest file 'falcon_kit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'falcon_kit.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-armv7l/egg
running install_lib
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/fc_asm_graph.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/__init__.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/pype_tasks.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/run_support.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/falcon_kit.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/FastaReader.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/stats_preassembly.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/bash.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/functional.py -> build/lib.linux-armv7l-2.7/falcon_kit
copying falcon_kit/multiproc.py -> build/lib.linux-armv7l-2.7/falcon_kit
creating build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/get_read_ctg_map.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/__init__.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/calc_cutoff.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/consensus.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/ovlp_stats.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/contig_annotate.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/pr_ctg_track.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/report_pre_assembly.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/actg_coordinate.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/ovlp_filter.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/rr_ctg_track.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/ctg_link_analysis.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/dedup_a_tigs.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/ovlp_to_graph.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/fetch_reads.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/graph_to_contig.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/graph_to_utgs.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/run1.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/fasta2fasta.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
copying falcon_kit/mains/tasks.py -> build/lib.linux-armv7l-2.7/falcon_kit/mains
creating build/lib.linux-armv7l-2.7/falcon_kit/util
copying falcon_kit/util/__init__.py -> build/lib.linux-armv7l-2.7/falcon_kit/util
copying falcon_kit/util/io.py -> build/lib.linux-armv7l-2.7/falcon_kit/util
copying falcon_kit/util/system.py -> build/lib.linux-armv7l-2.7/falcon_kit/util
running build_ext
building 'ext_falcon' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/src
creating build/temp.linux-armv7l-2.7/src/c
gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/ext_falcon.c -o build/temp.linux-armv7l-2.7/src/c/ext_falcon.o -fPIC -O3 -fno-omit-frame-pointer
gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/DW_banded.c -o build/temp.linux-armv7l-2.7/src/c/DW_banded.o -fPIC -O3 -fno-omit-frame-pointer
gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/kmer_lookup.c -o build/temp.linux-armv7l-2.7/src/c/kmer_lookup.o -fPIC -O3 -fno-omit-frame-pointer
gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/falcon.c -o build/temp.linux-armv7l-2.7/src/c/falcon.o -fPIC -O3 -fno-omit-frame-pointer
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-Ov5cuR/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/src/c/ext_falcon.o build/temp.linux-armv7l-2.7/src/c/DW_banded.o build/temp.linux-armv7l-2.7/src/c/kmer_lookup.o build/temp.linux-armv7l-2.7/src/c/falcon.o -o build/lib.linux-armv7l-2.7/ext_falcon.so
creating build/bdist.linux-armv7l
creating build/bdist.linux-armv7l/egg
creating build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/fc_asm_graph.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/__init__.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/pype_tasks.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/run_support.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/falcon_kit.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/FastaReader.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/stats_preassembly.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/bash.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/functional.py -> build/bdist.linux-armv7l/egg/falcon_kit
copying build/lib.linux-armv7l-2.7/falcon_kit/multiproc.py -> build/bdist.linux-armv7l/egg/falcon_kit
creating build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/get_read_ctg_map.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/__init__.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/calc_cutoff.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/consensus.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/ovlp_stats.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/contig_annotate.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/pr_ctg_track.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/report_pre_assembly.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/actg_coordinate.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/ovlp_filter.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/rr_ctg_track.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/ctg_link_analysis.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/dedup_a_tigs.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/ovlp_to_graph.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/fetch_reads.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/graph_to_contig.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/graph_to_utgs.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/run1.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/fasta2fasta.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
copying build/lib.linux-armv7l-2.7/falcon_kit/mains/tasks.py -> build/bdist.linux-armv7l/egg/falcon_kit/mains
creating build/bdist.linux-armv7l/egg/falcon_kit/util
copying build/lib.linux-armv7l-2.7/falcon_kit/util/__init__.py -> build/bdist.linux-armv7l/egg/falcon_kit/util
copying build/lib.linux-armv7l-2.7/falcon_kit/util/io.py -> build/bdist.linux-armv7l/egg/falcon_kit/util
copying build/lib.linux-armv7l-2.7/falcon_kit/util/system.py -> build/bdist.linux-armv7l/egg/falcon_kit/util
copying build/lib.linux-armv7l-2.7/ext_falcon.so -> build/bdist.linux-armv7l/egg
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/fc_asm_graph.py to fc_asm_graph.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/pype_tasks.py to pype_tasks.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/run_support.py to run_support.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/falcon_kit.py to falcon_kit.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/FastaReader.py to FastaReader.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/stats_preassembly.py to stats_preassembly.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/bash.py to bash.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/functional.py to functional.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/multiproc.py to multiproc.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/get_read_ctg_map.py to get_read_ctg_map.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/calc_cutoff.py to calc_cutoff.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/consensus.py to consensus.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/ovlp_stats.py to ovlp_stats.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/contig_annotate.py to contig_annotate.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/pr_ctg_track.py to pr_ctg_track.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/report_pre_assembly.py to report_pre_assembly.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/actg_coordinate.py to actg_coordinate.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/ovlp_filter.py to ovlp_filter.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/rr_ctg_track.py to rr_ctg_track.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/ctg_link_analysis.py to ctg_link_analysis.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/dedup_a_tigs.py to dedup_a_tigs.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/ovlp_to_graph.py to ovlp_to_graph.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/fetch_reads.py to fetch_reads.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/graph_to_contig.py to graph_to_contig.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/graph_to_utgs.py to graph_to_utgs.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/run1.py to run1.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/fasta2fasta.py to fasta2fasta.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/mains/tasks.py to tasks.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/util/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/util/io.py to io.pyc
byte-compiling build/bdist.linux-armv7l/egg/falcon_kit/util/system.py to system.pyc
creating stub loader for ext_falcon.so
byte-compiling build/bdist.linux-armv7l/egg/ext_falcon.py to ext_falcon.pyc
creating build/bdist.linux-armv7l/egg/EGG-INFO
installing scripts to build/bdist.linux-armv7l/egg/EGG-INFO/scripts
running install_scripts
running build_scripts
creating build/scripts-2.7
copying src/py_scripts/fc_dedup_a_tigs.py -> build/scripts-2.7
copying src/py_scripts/fc_ovlp_stats.py -> build/scripts-2.7
copying src/py_scripts/fc_graph_to_utgs.py -> build/scripts-2.7
copying src/py_scripts/fc_actg_coordinate.py -> build/scripts-2.7
copying src/py_scripts/fc_run.py -> build/scripts-2.7
copying src/py_scripts/fc_contig_annotate.py -> build/scripts-2.7
copying src/py_scripts/fc_ctg_link_analysis.py -> build/scripts-2.7
copying src/py_scripts/fc_ovlp_to_graph.py -> build/scripts-2.7
copying src/py_scripts/fc_ovlp_filter.py -> build/scripts-2.7
copying src/py_scripts/fc_consensus.py -> build/scripts-2.7
copying src/py_scripts/fc_graph_to_contig.py -> build/scripts-2.7
changing mode of build/scripts-2.7/fc_dedup_a_tigs.py from 644 to 755
changing mode of build/scripts-2.7/fc_ovlp_stats.py from 644 to 755
changing mode of build/scripts-2.7/fc_graph_to_utgs.py from 644 to 755
changing mode of build/scripts-2.7/fc_actg_coordinate.py from 644 to 755
changing mode of build/scripts-2.7/fc_run.py from 644 to 755
changing mode of build/scripts-2.7/fc_contig_annotate.py from 644 to 755
changing mode of build/scripts-2.7/fc_ctg_link_analysis.py from 644 to 755
changing mode of build/scripts-2.7/fc_ovlp_to_graph.py from 644 to 755
changing mode of build/scripts-2.7/fc_ovlp_filter.py from 644 to 755
changing mode of build/scripts-2.7/fc_consensus.py from 644 to 755
changing mode of build/scripts-2.7/fc_graph_to_contig.py from 644 to 755
creating build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_dedup_a_tigs.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_ovlp_stats.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_graph_to_utgs.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_actg_coordinate.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_run.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_contig_annotate.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_ctg_link_analysis.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_ovlp_to_graph.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_ovlp_filter.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_consensus.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
copying build/scripts-2.7/fc_graph_to_contig.py -> build/bdist.linux-armv7l/egg/EGG-INFO/scripts
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_dedup_a_tigs.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_ovlp_stats.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_graph_to_utgs.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_actg_coordinate.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_run.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_contig_annotate.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_ctg_link_analysis.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_ovlp_to_graph.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_ovlp_filter.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_consensus.py to 755
changing mode of build/bdist.linux-armv7l/egg/EGG-INFO/scripts/fc_graph_to_contig.py to 755
copying falcon_kit.egg-info/PKG-INFO -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/SOURCES.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/dependency_links.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/entry_points.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/not-zip-safe -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/requires.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
copying falcon_kit.egg-info/top_level.txt -> build/bdist.linux-armv7l/egg/EGG-INFO
writing build/bdist.linux-armv7l/egg/EGG-INFO/native_libs.txt
creating dist
creating 'dist/falcon_kit-0.7-py2.7-linux-armv7l.egg' and adding 'build/bdist.linux-armv7l/egg' to it
removing 'build/bdist.linux-armv7l/egg' (and everything under it)
Processing falcon_kit-0.7-py2.7-linux-armv7l.egg
creating /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg
Extracting falcon_kit-0.7-py2.7-linux-armv7l.egg to /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages
Adding falcon-kit 0.7 to easy-install.pth file
Installing fc_dedup_a_tigs.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_stats.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_graph_to_utgs.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_actg_coordinate.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_run.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_contig_annotate.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ctg_link_analysis.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_to_graph.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_filter.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_consensus.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_graph_to_contig.py script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_fetch_reads script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_pr_ctg_track script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_actg_coordinate script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_fasta2fasta script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ctg_link_analysis script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_to_graph script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_filter script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_get_read_ctg_map script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_run script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_contig_annotate script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_graph_to_utgs script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_run1 script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_ovlp_stats script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_consensus script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_rr_ctg_track script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_calc_cutoff script to /<<PKGBUILDDIR>>/inst/bin
Installing falcon-task script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_graph_to_contig script to /<<PKGBUILDDIR>>/inst/bin
Installing fc_dedup_a_tigs script to /<<PKGBUILDDIR>>/inst/bin
Installed /<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg
Processing dependencies for falcon-kit==0.7
Searching for networkx==1.11
Best match: networkx 1.11
Adding networkx 1.11 to easy-install.pth file
Using /usr/lib/python2.7/dist-packages
Finished processing dependencies for falcon-kit==0.7
make[4]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-make'
/usr/bin/make check
make[4]: Entering directory '/<<PKGBUILDDIR>>/FALCON-make'
python -c 'import pypeflow.common; print pypeflow.common'
<module 'pypeflow.common' from '/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg/pypeflow/common.pyc'>
python -c 'import falcon_kit; print falcon_kit.falcon'
<CDLL '/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg/ext_falcon.so', handle 1d625e0 at b6c485f0>
make[4]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-make'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-make'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
nosetests -v FALCON/test/
test_consensus.test_help ... ok
test_functional.test_get_daligner_job_descriptions ... ok
test_functional.test_get_daligner_job_descriptions_small ... ok
test_functional.test_get_daligner_job_descriptions_se161 ... ok
test_functional.test_get_mjob_data ... ok
test_functional.test_skip_LAcheck ... ok
test_functional.test_first_block_las ... ok
test_functional.test_xform_script_for_preads ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(8, 1) ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(7, 2) ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(4, 2) ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(3, 3) ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(1, 3) ... ok
test_functional.test_calc_cutoff_from_reverse_sorted_readlength_counts(0, 3) ... ok
test_functional.test_get_reverse_sorted_readlength_counts_from_DBstats ... ok
test_functional.test_num2int ... ok
test_functional.test_calc_cutoff ... ok
test_functional.test_parsed_readlengths_from_dbdump_output ... ok
test_functional.test_mapped_readlengths_from_dbdump_output ... ok
test_functional.test_average_difference ... ok
test_functional.test_calc_metric_truncation ... ok
test_functional.test_calc_metric_fragmentation ... ok
Calls itself 'nosetests', but reports ... ok
test_ovlp_filter.test_several ... ok
This is the same as a line dropped in the earlier test. ... ok
This is the same as a line kept in the earlier test. ... ok
test_ovlp_filter.test_empty ... ok
test_ovlp_stats.test_help ... ok
test_ovlp_stats.test ... ok
test_ovlp_to_graph.test_help ... ok
test_stats_preassembly.test_stats_dict ... ok
----------------------------------------------------------------------
Ran 31 tests in 1.532s
OK
PATH=/<<PKGBUILDDIR>>/inst/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /usr/bin/make test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C ./FALCON-make/ test
make[3]: Entering directory '/<<PKGBUILDDIR>>/FALCON-make'
/usr/bin/make -C /<<PKGBUILDDIR>>/FALCON-examples test
make[4]: Entering directory '/<<PKGBUILDDIR>>/FALCON-examples'
/usr/bin/make run-synth0
make[5]: Entering directory '/<<PKGBUILDDIR>>/FALCON-examples'
cd run/synth0; fc_run.py fc_run.cfg logging.ini
2016-11-19 21:12:01,065[INFO] Setup logging from file "logging.ini".
2016-11-19 21:12:01,070[INFO] fc_run started with configuration fc_run.cfg
2016-11-19 21:12:01,077[INFO] No target specified, assuming "assembly" as target
2016-11-19 21:12:01,082[WARNING] In simple_pwatcher_bridge, pwatcher_impl=<module 'pwatcher.fs_based' from '/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg/pwatcher/fs_based.pyc'>
2016-11-19 21:12:01,083[INFO] In simple_pwatcher_bridge, pwatcher_impl=<module 'pwatcher.fs_based' from '/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg/pwatcher/fs_based.pyc'>
2016-11-19 21:12:01,087[INFO] job_type='local', job_queue='production'
2016-11-19 21:12:01,102[INFO] Num unsatisfied: 1, graph: 1
2016-11-19 21:12:01,103[INFO] About to submit: Node(0-rawreads/raw-fofn-abs)
2016-11-19 21:12:01,109[INFO] starting job Job(jobid='Pd2f3e671408249', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'})
2016-11-19 21:12:01,129[INFO] Submitted backgroundjob=MetaJobLocal(MetaJob(job=Job(jobid='Pd2f3e671408249', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'}), lang_exe='/bin/bash'))
2016-11-19 21:12:01,135[INFO] sleep 0.1
2016-11-19 21:12:01,239[INFO] sleep 0.2
2016-11-19 21:12:01,444[INFO] sleep 0.3
2016-11-19 21:12:01,749[INFO] sleep 0.4
2016-11-19 21:12:02,156[INFO] recently_satisfied: set([Node(0-rawreads/raw-fofn-abs)])
2016-11-19 21:12:02,158[INFO] Num satisfied in this iteration: 1
2016-11-19 21:12:02,159[INFO] Num still unsatisfied: 0
2016-11-19 21:12:02,182[INFO] Num unsatisfied: 1, graph: 2
2016-11-19 21:12:02,183[INFO] About to submit: Node(0-rawreads)
2016-11-19 21:12:02,193[INFO] starting job Job(jobid='P1126a492d9f1b5', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'})
2016-11-19 21:12:02,214[INFO] Submitted backgroundjob=MetaJobLocal(MetaJob(job=Job(jobid='P1126a492d9f1b5', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'}), lang_exe='/bin/bash'))
2016-11-19 21:12:02,220[INFO] sleep 0.1
2016-11-19 21:12:02,325[INFO] sleep 0.2
2016-11-19 21:12:02,528[INFO] sleep 0.3
2016-11-19 21:12:02,832[INFO] sleep 0.4
2016-11-19 21:12:03,237[INFO] sleep 0.5
2016-11-19 21:12:03,743[INFO] recently_satisfied: set([Node(0-rawreads)])
2016-11-19 21:12:03,745[INFO] Num satisfied in this iteration: 1
2016-11-19 21:12:03,746[INFO] Num still unsatisfied: 0
2016-11-19 21:12:03,765[INFO] Num unsatisfied: 1, graph: 3
2016-11-19 21:12:03,766[INFO] About to submit: Node(0-rawreads/daligner-scatter)
2016-11-19 21:12:03,776[INFO] starting job Job(jobid='P889ae5bc3193a3', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/daligner-scatter', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'})
2016-11-19 21:12:03,797[INFO] Submitted backgroundjob=MetaJobLocal(MetaJob(job=Job(jobid='P889ae5bc3193a3', cmd='/bin/bash run.sh', rundir='/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/daligner-scatter', options={'job_queue': 'production', 'sge_option': '-pe smp 8 -q production', 'job_type': 'local'}), lang_exe='/bin/bash'))
2016-11-19 21:12:03,803[INFO] sleep 0.1
2016-11-19 21:12:03,907[INFO] sleep 0.2
2016-11-19 21:12:04,111[INFO] sleep 0.3
2016-11-19 21:12:04,415[INFO] sleep 0.4
2016-11-19 21:12:04,822[INFO] recently_satisfied: set([Node(0-rawreads/daligner-scatter)])
2016-11-19 21:12:04,823[INFO] Num satisfied in this iteration: 1
2016-11-19 21:12:04,825[INFO] Num still unsatisfied: 0
2016-11-19 21:12:04,872[INFO] Num unsatisfied: 3, graph: 6
2016-11-19 21:12:04,873[INFO] About to submit: Node(0-rawreads/job_0001)
2016-11-19 21:12:04,874[INFO] About to submit: Node(0-rawreads/job_0000)
2016-11-19 21:12:04,888[INFO] starting job Job(jobid='P09d97e5e6ba793', cmd='/bin/bash run.sh', rundir=u'/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/job_0000', options={'job_queue': 'production', 'sge_option': u'-pe smp 8 -q production', 'job_type': 'local'})
2016-11-19 21:12:04,909[INFO] Submitted backgroundjob=MetaJobLocal(MetaJob(job=Job(jobid='P09d97e5e6ba793', cmd='/bin/bash run.sh', rundir=u'/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/job_0000', options={'job_queue': 'production', 'sge_option': u'-pe smp 8 -q production', 'job_type': 'local'}), lang_exe='/bin/bash'))
2016-11-19 21:12:04,911[INFO] starting job Job(jobid='P3e2cd62142ffe1', cmd='/bin/bash run.sh', rundir=u'/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/job_0001', options={'job_queue': 'production', 'sge_option': u'-pe smp 8 -q production', 'job_type': 'local'})
2016-11-19 21:12:04,937[INFO] Submitted backgroundjob=MetaJobLocal(MetaJob(job=Job(jobid='P3e2cd62142ffe1', cmd='/bin/bash run.sh', rundir=u'/<<PKGBUILDDIR>>/FALCON-examples/run/synth0/0-rawreads/job_0001', options={'job_queue': 'production', 'sge_option': u'-pe smp 8 -q production', 'job_type': 'local'}), lang_exe='/bin/bash'))
2016-11-19 21:12:04,945[INFO] sleep 0.1
2016-11-19 21:12:05,051[INFO] sleep 0.2
2016-11-19 21:12:05,256[INFO] sleep 0.3
2016-11-19 21:12:05,561[INFO] sleep 0.4
2016-11-19 21:12:05,970[INFO] sleep 0.5
2016-11-19 21:12:06,479[ERROR] Task Node(0-rawreads/job_0000) failed with exit-code=256
2016-11-19 21:12:06,480[ERROR] Task Node(0-rawreads/job_0001) failed with exit-code=256
2016-11-19 21:12:06,483[INFO] recently_satisfied: set([])
2016-11-19 21:12:06,484[INFO] Num satisfied in this iteration: 0
2016-11-19 21:12:06,485[INFO] Num still unsatisfied: 3
2016-11-19 21:12:06,486[ERROR] Some tasks are recently_done but not satisfied: set([Node(0-rawreads/job_0001), Node(0-rawreads/job_0000)])
2016-11-19 21:12:06,487[ERROR] ready: set([])
submitted: set([])
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/inst/bin/fc_run.py", line 4, in <module>
__import__('pkg_resources').run_script('falcon-kit==0.7', 'fc_run.py')
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 742, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1497, in run_script
exec(code, namespace, namespace)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg/EGG-INFO/scripts/fc_run.py", line 5, in <module>
main(sys.argv)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg/falcon_kit/mains/run1.py", line 484, in main
main1(argv[0], args.config, args.logger)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg/falcon_kit/mains/run1.py", line 145, in main1
setNumThreadAllowed=PypeProcWatcherWorkflow.setNumThreadAllowed)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/falcon_kit-0.7-py2.7-linux-armv7l.egg/falcon_kit/mains/run1.py", line 246, in run
wf.refreshTargets(exitOnFailure=exitOnFailure)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 206, in refreshTargets
self._refreshTargets(updateFreq, exitOnFailure)
File "/<<PKGBUILDDIR>>/inst/lib/python2.7/site-packages/pypeflow-0.1.1-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 278, in _refreshTargets
failures, len(unsatg)))
Exception: We had 2 failures. 3 tasks remain unsatisfied.
makefile:4: recipe for target 'run-synth0' failed
make[5]: *** [run-synth0] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-examples'
makefile:21: recipe for target 'full-test' failed
make[4]: *** [full-test] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-examples'
makefile:65: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-make'
makefile:23: recipe for target 'test' failed
make[2]: *** [test] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:32: recipe for target 'integration-tests' failed
make[1]: *** [integration-tests] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:14: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2016-11-19T21:12:06Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 249
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 626
Job: falcon_1.8.2-1
Machine Architecture: armhf
Package: falcon
Package-Time: 928
Source-Version: 1.8.2-1
Space: 0
Status: failed
Version: 1.8.2-1
--------------------------------------------------------------------------------
Finished at 2016-11-19T21:12:06Z
Build needed 00:00:00, 0k disc space