emmax →
0~beta.20100307-5 →
armhf → 2023-12-25 10:04:29
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| emmax 0~beta.20100307-5 (armhf) Mon, 25 Dec 2023 09:58:38 +0000 |
+==============================================================================+
Package: emmax
Version: 0~beta.20100307-5
Source Version: 0~beta.20100307-5
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-cabe8f6c-aeb9-4f06-9218-49080312a192' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/emmax-3IQUUY/resolver-Vo6ENS' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 11s (2698 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'emmax' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/emmax.git
Please use:
git clone https://salsa.debian.org/med-team/emmax.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 29.7 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main emmax 0~beta.20100307-5 (dsc) [2140 B]
Get:2 http://172.17.4.1/private trixie-staging/main emmax 0~beta.20100307-5 (tar) [18.6 kB]
Get:3 http://172.17.4.1/private trixie-staging/main emmax 0~beta.20100307-5 (diff) [8936 B]
Fetched 29.7 kB in 0s (418 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/emmax-3IQUUY/emmax-0~beta.20100307' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/emmax-3IQUUY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libblas-dev, liblapacke-dev, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [404 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [472 B]
Fetched 1833 B in 0s (50.9 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran5
libicu72 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc
libmagic1 libpipeline1 libsub-override-perl libtmglib-dev libtmglib3 libtool
libuchardet0 libxml2 m4 man-db po-debconf zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff liblapack-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran5
libicu72 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc
libmagic1 libpipeline1 libsub-override-perl libtmglib-dev libtmglib3 libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 40 newly installed, 0 to remove and 1 not upgraded.
Need to get 25.0 MB of archives.
After this operation, 105 MB of additional disk space will be used.
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Get:3 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-2 [81.2 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
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Get:10 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
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Get:14 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libtmglib3 armhf 3.11.0-2 [86.5 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf liblapacke armhf 3.11.0-2 [292 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libtmglib-dev armhf 3.11.0-2 [86.2 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf liblapacke-dev armhf 3.11.0-2 [273 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up automake (1:1.16.5-1.3) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
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Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-7+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-7+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblapacke_3.11.0-2 liblapacke-dev_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.32_5.32.1-6 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libreadline8_8.2-3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-2 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtmglib-dev_3.11.0-2 libtmglib3_3.11.0-2 libtool_2.4.7-7 libubsan1_13.2.0-7+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.32_5.32.1-6 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: emmax
Binary: emmax
Architecture: any
Version: 0~beta.20100307-5
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: SteffenSteffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://genome.sph.umich.edu/wiki/EMMAX
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/emmax
Vcs-Git: https://salsa.debian.org/med-team/emmax.git
Testsuite: autopkgtest
Testsuite-Triggers: plink
Build-Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev
Package-List:
emmax deb science optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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183bf6ef5bc78238a3ef37557e39ff16 8936 emmax_0~beta.20100307-5.debian.tar.xz
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gpgv: Signature made Fri Dec 22 19:05:41 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./emmax_0~beta.20100307-5.dsc: no acceptable signature found
dpkg-source: info: extracting emmax in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking emmax_0~beta.20100307.orig.tar.gz
dpkg-source: info: unpacking emmax_0~beta.20100307-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying dynamic.patch
dpkg-source: info: applying aborts.patch
dpkg-source: info: applying install.patch
dpkg-source: info: applying clean.patch
dpkg-source: info: applying logfile.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying fix-autopkgtest.patch
dpkg-source: info: applying lapacke.patch
dpkg-source: info: applying syntax.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=7507367173ad4858a061fdd2cf60741a
JOURNAL_STREAM=8:39174
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-cabe8f6c-aeb9-4f06-9218-49080312a192
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c24006
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package emmax
dpkg-buildpackage: info: source version 0~beta.20100307-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o emmax emmax-kin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -O2 -Wall -g -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax emmax.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro
gcc -O2 -Wall -g -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax-kin emmax-kin.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_installdirs -a
dh_auto_install --destdir=debian/emmax/ -a
make -j4 install DESTDIR=/<<BUILDDIR>>/emmax-0\~beta.20100307/debian/emmax AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/emmax/usr/bin/
cp emmax emmax-kin /<<PKGBUILDDIR>>/debian/emmax/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install --sourcedir=.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/emmax/usr/bin/emmax debian/emmax/usr/bin/emmax-kin were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'emmax-dbgsym' in '../emmax-dbgsym_0~beta.20100307-5_armhf.deb'.
dpkg-deb: building package 'emmax' in '../emmax_0~beta.20100307-5_armhf.deb'.
dpkg-genbuildinfo --build=any -O../emmax_0~beta.20100307-5_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../emmax_0~beta.20100307-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-25T10:04:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
emmax_0~beta.20100307-5_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 22 Dec 2023 20:04:08 +0100
Source: emmax
Binary: emmax emmax-dbgsym
Architecture: armhf
Version: 0~beta.20100307-5
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
emmax - genetic mapping considering population structure
Changes:
emmax (0~beta.20100307-5) unstable; urgency=medium
.
* Put libblas-dev as first alternative to be more portable
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Files:
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40b5d0efe4a2ac2f001ad38a088ea178 5501 science optional emmax_0~beta.20100307-5_armhf.buildinfo
4152a51fb49c19fb2fc682f73b11eb4b 23252 science optional emmax_0~beta.20100307-5_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: emmax
Binary: emmax emmax-dbgsym
Architecture: armhf
Version: 0~beta.20100307-5
Checksums-Md5:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 25 Dec 2023 10:04:22 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-2),
bsdutils (= 1:2.39.3-2),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-13+rpi1),
cpp-13 (= 13.2.0-7+rpi1),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.9),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-7+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-7+rpi1),
gcc-13-base (= 13.2.0-7+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-7+rpi1),
libatomic1 (= 13.2.0-7+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-2),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-3),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-7+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.9),
libdpkg-perl (= 1.22.1+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libgcc-12-dev (= 12.3.0-13+rpi1),
libgcc-13-dev (= 13.2.0-7+rpi1),
libgcc-s1 (= 13.2.0-7+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran5 (= 13.2.0-7+rpi1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgomp1 (= 13.2.0-7+rpi1),
libgpg-error0 (= 1.47-3),
libgssapi-krb5-2 (= 1.20.1-5),
libicu72 (= 72.1-4),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
liblapacke (= 3.11.0-2),
liblapacke-dev (= 3.11.0-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.5-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.3-2),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-10),
libpipeline1 (= 1.5.7-1),
libseccomp2 (= 2.5.4-2+rpi1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsmartcols1 (= 2.39.3-2),
libssl3 (= 3.1.4-2),
libstdc++-13-dev (= 13.2.0-7+rpi1),
libstdc++6 (= 13.2.0-7+rpi1),
libsub-override-perl (= 0.10-1),
libsystemd0 (= 254.5-1+rpi1),
libtext-glob-perl (= 0.11-3),
libtinfo6 (= 6.4+20231209-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtmglib-dev (= 3.11.0-2),
libtmglib3 (= 3.11.0-2),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-7+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.3-2),
libxml2 (= 2.9.14+dfsg-1.3),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20231126-1),
ncurses-base (= 6.4+20231209-1),
ncurses-bin (= 6.4+20231209-1),
patch (= 2.7.6-7),
perl (= 5.36.0-10),
perl-base (= 5.36.0-10),
perl-modules-5.36 (= 5.36.0-10),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-5),
tar (= 1.34+dfsg-1.3),
usrmerge (= 38),
util-linux (= 2.39.3-2),
xz-utils (= 5.4.5-0.1),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1703271848"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
emmax-dbgsym_0~beta.20100307-5_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 50592 bytes: control archive=648 bytes.
422 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: emmax-dbgsym
Source: emmax
Version: 0~beta.20100307-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 74
Depends: emmax (= 0~beta.20100307-5)
Section: debug
Priority: optional
Description: debug symbols for emmax
Build-Ids: 01a302a7d0adb2414ba7a645d4b2262ceb99fd56 e1f2f9c1cde5a17ccc6de196e483d36f76be1e33
drwxr-xr-x root/root 0 2023-12-22 19:04 ./
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/.build-id/01/
-rw-r--r-- root/root 15788 2023-12-22 19:04 ./usr/lib/debug/.build-id/01/a302a7d0adb2414ba7a645d4b2262ceb99fd56.debug
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/.build-id/e1/
-rw-r--r-- root/root 42588 2023-12-22 19:04 ./usr/lib/debug/.build-id/e1/f2f9c1cde5a17ccc6de196e483d36f76be1e33.debug
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2600 2023-12-22 19:04 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/emmax.debug
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-12-22 19:04 ./usr/share/doc/emmax-dbgsym -> emmax
emmax_0~beta.20100307-5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 23252 bytes: control archive=1088 bytes.
929 bytes, 17 lines control
516 bytes, 8 lines md5sums
Package: emmax
Version: 0~beta.20100307-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), liblapack3 | liblapack.so.3, liblapacke (>= 3.11.0), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: http://genome.sph.umich.edu/wiki/EMMAX
Description: genetic mapping considering population structure
EMMAX is a statistical test for large scale human or model organism
association mapping accounting for the sample structure. In addition
to the computational efficiency obtained by EMMA algorithm, EMMAX takes
advantage of the fact that each locus explains only a small fraction of
complex traits, which allows one to avoid repetitive variance component
estimation procedure, resulting in a significant amount of increase in
computational time of association mapping using mixed model.
drwxr-xr-x root/root 0 2023-12-22 19:04 ./
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/bin/
-rwxr-xr-x root/root 34580 2023-12-22 19:04 ./usr/bin/emmax
-rwxr-xr-x root/root 14040 2023-12-22 19:04 ./usr/bin/emmax-kin
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/doc/emmax/
-rw-r--r-- root/root 784 2023-12-22 19:04 ./usr/share/doc/emmax/README.Debian
-rw-r--r-- root/root 711 2023-12-22 19:04 ./usr/share/doc/emmax/changelog.Debian.gz
-rw-r--r-- root/root 2588 2023-12-22 19:04 ./usr/share/doc/emmax/copyright
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/doc/emmax/examples/
-rwxr-xr-x root/root 1512 2023-12-22 19:04 ./usr/share/doc/emmax/examples/plink2emmax.sh
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-12-22 19:04 ./usr/share/man/man1/
-rw-r--r-- root/root 329 2023-12-22 19:04 ./usr/share/man/man1/emmax-kin.1.gz
-rw-r--r-- root/root 742 2023-12-22 19:04 ./usr/share/man/man1/emmax.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 996
Build-Time: 16
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 298
Job: emmax_0~beta.20100307-5
Machine Architecture: armhf
Package: emmax
Package-Time: 345
Source-Version: 0~beta.20100307-5
Space: 996
Status: successful
Version: 0~beta.20100307-5
--------------------------------------------------------------------------------
Finished at 2023-12-25T10:04:23Z
Build needed 00:05:45, 996k disk space