emmax →
0~beta.20100307-1 →
armhf → 2019-10-28 23:09:19
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| emmax 0~beta.20100307-1 (armhf) Mon, 28 Oct 2019 23:04:38 +0000 |
+==============================================================================+
Package: emmax
Version: 0~beta.20100307-1
Source Version: 0~beta.20100307-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-88d186fe-89ea-4473-89f3-501e59d84a16' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 10s (2348 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'emmax' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/emmax.git
Please use:
git clone https://salsa.debian.org/med-team/emmax.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 27.0 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main emmax 0~beta.20100307-1 (dsc) [2098 B]
Get:2 http://172.17.0.1/private bullseye-staging/main emmax 0~beta.20100307-1 (tar) [18.6 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main emmax 0~beta.20100307-1 (diff) [6348 B]
Fetched 27.0 kB in 0s (260 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/emmax-wGXVdW/emmax-0~beta.20100307' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/emmax-wGXVdW' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7qGAHF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-7qGAHF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-7qGAHF/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Packages [434 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12235 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), libatlas-base-dev, liblapack-dev, zlib1g-dev, libblas3, liblapack3, libatlas3-base
Filtered Build-Depends: debhelper (>= 12~), libatlas-base-dev, liblapack-dev, zlib1g-dev, libblas3, liblapack3, libatlas3-base
dpkg-deb: building package 'sbuild-build-depends-emmax-dummy' in '/<<BUILDDIR>>/resolver-7qGAHF/apt_archive/sbuild-build-depends-emmax-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-emmax-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Sources [525 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ Packages [607 B]
Fetched 2465 B in 0s (10.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install emmax build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack-dev liblapack3 libmagic-mgc libmagic1 libncurses6 libpipeline1
libsigsegv2 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libatlas-doc liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack-dev liblapack3 libmagic-mgc libmagic1 libncurses6 libpipeline1
libsigsegv2 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
man-db po-debconf sbuild-build-depends-emmax-dummy sensible-utils zlib1g-dev
0 upgraded, 44 newly installed, 0 to remove and 7 not upgraded.
Need to get 29.0 MB of archives.
After this operation, 123 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7qGAHF/apt_archive ./ sbuild-build-depends-emmax-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-1 [1135 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-8+rpi1 [231 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libatlas3-base armhf 3.10.3-8+rpi1 [2399 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libatlas-base-dev armhf 3.10.3-8+rpi1 [2966 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-7 [108 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-7 [1568 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-7 [2840 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Setting up libblas3:armhf (3.8.0-7) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libgfortran5:armhf (9.2.1-8+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up libfile-stripnondeterminism-perl (1.6.1-1) ...
Setting up liblapack3:armhf (3.8.0-7) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libatlas3-base:armhf (3.10.3-8+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-2) ...
Setting up libatlas-base-dev:armhf (3.10.3-8+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up liblapack-dev:armhf (3.8.0-7) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up sbuild-build-depends-emmax-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-14 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatlas-base-dev_3.10.3-8+rpi1 libatlas3-base_3.10.3-8+rpi1 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1+rpi1 libblas3_3.8.0-7 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.1-1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8+rpi1 libglib2.0-0_2.62.2-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libksba8_1.3.5-2 liblapack-dev_3.8.0-7 liblapack3_3.8.0-7 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.1-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.17-2 libpam-cap_1:2.25-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.30_5.30.0-7 libpipeline1_1.5.1-2 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-3 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 netbase_5.6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-7 perl-base_5.30.0-7 perl-modules-5.30_5.30.0-7 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-emmax-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Mar 20 20:51:49 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./emmax_0~beta.20100307-1.dsc
dpkg-source: info: extracting emmax in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking emmax_0~beta.20100307.orig.tar.gz
dpkg-source: info: unpacking emmax_0~beta.20100307-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying dynamic.patch
dpkg-source: info: applying paths.patch
dpkg-source: info: applying aborts.patch
dpkg-source: info: applying install.patch
dpkg-source: info: applying clean.patch
dpkg-source: info: applying logfile.patch
dpkg-source: info: applying atlas.patch
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-88d186fe-89ea-4473-89f3-501e59d84a16
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package emmax
dpkg-buildpackage: info: source version 0~beta.20100307-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o emmax emmax-kin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -O2 -Wall -g -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -o emmax emmax.c -L/usr/lib/atlas-base -L/usr/lib/lapack/ -llapack_atlas -llapack -lcblas -lblas -latlas -lcblas -lm -lz -Wl,-z,relro
gcc -O2 -Wall -g -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -o emmax-kin emmax-kin.c -L/usr/lib/atlas-base -L/usr/lib/lapack/ -llapack_atlas -llapack -lcblas -lblas -latlas -lcblas -lm -lz -Wl,-z,relro
emmax-kin.c: In function 'main':
emmax-kin.c:62:103: warning: variable 'gz_flag' set but not used [-Wunused-but-set-variable]
62 | int verbose, ndigits, tped_nheadercols, tfam_nheadercols, flag_autosomal, rand_fill_flag, ibs_flag, gz_flag, hetero_division_flag;
| ^~~~~~~
emmax.c: In function 'main':
emmax.c:104:120: warning: variable 'dosage_flag' set but not used [-Wunused-but-set-variable]
104 | int mphenoflag, write_eig_flag, gz_flag, tped_nheadercols, tfam_nheadercols, zero_miss_flag, isnpid, gen_kin_method, dosage_flag, gls_flag;
| ^~~~~~~~~~~
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
make -j4 install DESTDIR=/<<BUILDDIR>>/emmax-0\~beta.20100307/debian/emmax AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/emmax/usr/bin/
cp emmax emmax-kin /<<PKGBUILDDIR>>/debian/emmax/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install --sourcedir=.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/emmax/usr/bin/emmax debian/emmax/usr/bin/emmax-kin were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'emmax' in '../emmax_0~beta.20100307-1_armhf.deb'.
dpkg-deb: building package 'emmax-dbgsym' in '../emmax-dbgsym_0~beta.20100307-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../emmax_0~beta.20100307-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-10-28T23:09:16Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
emmax_0~beta.20100307-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 20 Mar 2019 18:28:20 +0100
Source: emmax
Binary: emmax emmax-dbgsym
Architecture: armhf
Version: 0~beta.20100307-1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
emmax - genetic mapping considering population structure
Closes: 925158
Changes:
emmax (0~beta.20100307-1) unstable; urgency=low
.
* Initial release (Closes: #925158)
Checksums-Sha1:
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e413fdd98e7f322ed1998192899ec958707f8be5 4792 emmax_0~beta.20100307-1_armhf.buildinfo
8d9602e71c63fb89dfa0c55dc01f9d8871fac94c 16372 emmax_0~beta.20100307-1_armhf.deb
Checksums-Sha256:
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7c08ae6b0445da60db7a2e89e1ad5232237c6042533aef58d3f9d18b1a3a37ed 4792 emmax_0~beta.20100307-1_armhf.buildinfo
4d7724f8c0625528813c0f69d82ae92431b0a1eadb17fa27c99dded928ab48eb 16372 emmax_0~beta.20100307-1_armhf.deb
Files:
e0b1b40720cc42ba9c1da43026ac6f9b 32212 debug optional emmax-dbgsym_0~beta.20100307-1_armhf.deb
63d9b3809e452777a421b7e07dd4c12e 4792 science optional emmax_0~beta.20100307-1_armhf.buildinfo
27426179f8b0012e02bf5fc000f01337 16372 science optional emmax_0~beta.20100307-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
emmax-dbgsym_0~beta.20100307-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 32212 bytes: control archive=648 bytes.
422 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: emmax-dbgsym
Source: emmax
Version: 0~beta.20100307-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: emmax (= 0~beta.20100307-1)
Section: debug
Priority: optional
Description: debug symbols for emmax
Build-Ids: 0f5357c40292d555e08cba6bd6aef8412c4ad969 8231f714aef5781791f95db896f00c75aef6a927
drwxr-xr-x root/root 0 2019-03-20 17:28 ./
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/.build-id/0f/
-rw-r--r-- root/root 11164 2019-03-20 17:28 ./usr/lib/debug/.build-id/0f/5357c40292d555e08cba6bd6aef8412c4ad969.debug
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 29324 2019-03-20 17:28 ./usr/lib/debug/.build-id/82/31f714aef5781791f95db896f00c75aef6a927.debug
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2340 2019-03-20 17:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/emmax.debug
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-03-20 17:28 ./usr/share/doc/emmax-dbgsym -> emmax
emmax_0~beta.20100307-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 16372 bytes: control archive=1076 bytes.
896 bytes, 17 lines control
516 bytes, 8 lines md5sums
Package: emmax
Version: 0~beta.20100307-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 51
Depends: libatlas3-base, libc6 (>= 2.29), liblapack3 | liblapack.so.3, zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: http://genome.sph.umich.edu/wiki/EMMAX
Description: genetic mapping considering population structure
EMMAX is a statistical test for large scale human or model organism
association mapping accounting for the sample structure. In addition
to the computational efficiency obtained by EMMA algorithm, EMMAX takes
advantage of the fact that each locus explains only a small fraction of
complex traits, which allows one to avoid repetitive variance component
estimation procedure, resulting in a significant amount of increase in
computational time of association mapping using mixed model.
drwxr-xr-x root/root 0 2019-03-20 17:28 ./
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/bin/
-rwxr-xr-x root/root 22268 2019-03-20 17:28 ./usr/bin/emmax
-rwxr-xr-x root/root 9928 2019-03-20 17:28 ./usr/bin/emmax-kin
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/doc/emmax/
-rw-r--r-- root/root 784 2019-03-20 17:28 ./usr/share/doc/emmax/README.Debian
-rw-r--r-- root/root 160 2019-03-20 17:28 ./usr/share/doc/emmax/changelog.Debian.gz
-rw-r--r-- root/root 2589 2019-03-20 17:28 ./usr/share/doc/emmax/copyright
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/doc/emmax/examples/
-rwxr-xr-x root/root 1512 2019-03-20 17:28 ./usr/share/doc/emmax/examples/plink2emmax.sh
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/man/
drwxr-xr-x root/root 0 2019-03-20 17:28 ./usr/share/man/man1/
-rw-r--r-- root/root 329 2019-03-20 17:28 ./usr/share/man/man1/emmax-kin.1.gz
-rw-r--r-- root/root 742 2019-03-20 17:28 ./usr/share/man/man1/emmax.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 776
Build-Time: 12
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 247
Job: emmax_0~beta.20100307-1
Machine Architecture: armhf
Package: emmax
Package-Time: 278
Source-Version: 0~beta.20100307-1
Space: 776
Status: successful
Version: 0~beta.20100307-1
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Finished at 2019-10-28T23:09:16Z
Build needed 00:04:38, 776k disk space