ecopcr →
1.0.1+dfsg-4 →
armhf → 2022-02-06 04:53:11
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| ecopcr 1.0.1+dfsg-4 (armhf) Sun, 06 Feb 2022 04:46:35 +0000 |
+==============================================================================+
Package: ecopcr
Version: 1.0.1+dfsg-4
Source Version: 1.0.1+dfsg-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-e55c3b85-cba3-45c3-bd0f-a5e2ad2321f5' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/ecopcr-mrMvxm/resolver-kBfniC' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 10s (2658 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ecopcr' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ecopcr.git
Please use:
git clone https://salsa.debian.org/med-team/ecopcr.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 24.9 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main ecopcr 1.0.1+dfsg-4 (dsc) [2035 B]
Get:2 http://172.17.4.1/private bookworm-staging/main ecopcr 1.0.1+dfsg-4 (tar) [24.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main ecopcr 1.0.1+dfsg-4 (diff) [16.0 kB]
Fetched 24.9 MB in 3s (7422 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ecopcr-mrMvxm/ecopcr-1.0.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ecopcr-mrMvxm' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu67 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.9
python3.9-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl ca-certificates libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu67 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.9
python3.9-minimal sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 45 newly installed, 0 to remove and 80 not upgraded.
Need to get 22.8 MB of archives.
After this operation, 86.4 MB of additional disk space will be used.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-1+rpi1 [794 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.3-3 [81.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-1+rpi1 [1595 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1+b4 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 5.0.0 [32.5 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-1+rpi1 [1611 kB]
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Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1+b4 [21.8 kB]
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Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220119 [110 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37-7+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-10+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-5 binutils_2.37-7+rpi1 binutils-arm-linux-gnueabihf_2.37-7+rpi1 binutils-common_2.37-7+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7+rpi1 libblkid1_2.37.2-4 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-7+rpi1 libctf0_2.37-7+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libexpat1_2.4.3-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-10+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpython3-stdlib_3.9.7-1+b4 libpython3.9-minimal_3.9.10-1+rpi1 libpython3.9-stdlib_3.9.10-1+rpi1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 media-types_5.0.0 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.7-1+b4 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.7-1+b4 python3.9_3.9.10-1+rpi1 python3.9-minimal_3.9.10-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: ecopcr
Binary: ecopcr
Architecture: any
Version: 1.0.1+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://git.metabarcoding.org/obitools/ecopcr/wikis/home
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/ecopcr
Vcs-Git: https://salsa.debian.org/med-team/ecopcr.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev
Package-List:
ecopcr deb science optional arch=any
Checksums-Sha1:
06d4f44d75e76a0424052456169ca0c8e3e29071 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz
c0e63409c3a110f32ceab12c2426622997d018d5 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz
Checksums-Sha256:
90e3027e465f1a05a8204b41cff48b5a7fbc00d8e0dce71602698e7abd1baeda 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz
e2dcc6c575670c28ccc303d690f6627a34a4e2a76524f53d06fd04613200836b 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz
Files:
2d68e793f98edf1055a246278370f1f4 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz
28fd18fc5557a44b2a6eaea676566b10 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.QL8clNIr/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 3 13:53:42 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ecopcr_1.0.1+dfsg-4.dsc
dpkg-source: info: extracting ecopcr in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ecopcr_1.0.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking ecopcr_1.0.1+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying ecoisundertaxon.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=12b0d11b34b646c0abd5fc586dfab6e4
JOURNAL_STREAM=8:22125
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e55c3b85-cba3-45c3-bd0f-a5e2ad2321f5
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c12743
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package ecopcr
dpkg-buildpackage: info: source version 1.0.1+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=src --with python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
cd src && make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o
rm -f ecoPCR ecofind ecogrep ecoisundertaxon
make -C libapat clean
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/libapat'
rm -rf apat_parse.o apat_search.o libstki.o libapat.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/libapat'
make -C libecoPCR clean
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/libecoPCR'
rm -rf ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o libecoPCR.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/libecoPCR'
make -C libthermo clean
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/libthermo'
rm -rf nnparams.o libthermo.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/libthermo'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
find . -type f -name "*.P" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules binary-arch
dh binary-arch --sourcedirectory=src --with python3
dh_update_autotools_config -a -O--sourcedirectory=src
dh_autoreconf -a -O--sourcedirectory=src
dh_auto_configure -a -O--sourcedirectory=src
dh_auto_build -a -O--sourcedirectory=src
cd src && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecopcr.o ecopcr.c
make -C libapat
make -C libecoPCR
make -C libthermo
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libapat'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libecoPCR'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libthermo'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nnparams.o nnparams.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_parse.o apat_parse.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoapat.o ecoapat.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_search.o apat_search.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecodna.o ecodna.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoError.o ecoError.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoIOUtils.o ecoIOUtils.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofind.o ecofind.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoMalloc.o ecoMalloc.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o libstki.o libstki.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecorank.o ecorank.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoseq.o ecoseq.c
ar -cr libapat.a apat_parse.o apat_search.o libstki.o
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecotax.o ecotax.c
ranlib libapat.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libapat'
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofilter.o ecofilter.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecogrep.o ecogrep.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoisundertaxon.o ecoisundertaxon.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o econame.o econame.c
ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o
ranlib libecoPCR.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libecoPCR'
ar -cr libthermo.a nnparams.o
ranlib libthermo.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libthermo'
gcc -Wl,-z,relro -Wl,-z,now -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecogrep ecogrep.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecoisundertaxon ecoisundertaxon.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_test -a -O--sourcedirectory=src
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
dh_auto_install --destdir=debian/ecopcr/ -a -O--sourcedirectory=src
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for tool in tools/* ; do \
cp -a ${tool} debian/ecopcr/usr/bin/`basename ${tool} .py` ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_python3 -a -O--sourcedirectory=src
dh_installsystemduser -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
dh_compress -a -O--sourcedirectory=src
dh_fixperms -a -O--sourcedirectory=src
dh_missing -a -O--sourcedirectory=src
dh_dwz -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ecopcr/usr/bin/ecofind debian/ecopcr/usr/bin/ecoisundertaxon debian/ecopcr/usr/bin/ecoPCR debian/ecopcr/usr/bin/ecogrep were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'ecopcr' in '../ecopcr_1.0.1+dfsg-4_armhf.deb'.
dpkg-deb: building package 'ecopcr-dbgsym' in '../ecopcr-dbgsym_1.0.1+dfsg-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../ecopcr_1.0.1+dfsg-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-06T04:53:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ecopcr_1.0.1+dfsg-4_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 03 Feb 2022 14:50:37 +0100
Source: ecopcr
Binary: ecopcr ecopcr-dbgsym
Architecture: armhf
Version: 1.0.1+dfsg-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
ecopcr - estimate PCR barcode primers quality
Changes:
ecopcr (1.0.1+dfsg-4) unstable; urgency=medium
.
* Fix watch file
* Standards-Version: 4.6.0 (routine-update)
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Files:
de8d44bf986bbd4b9bfa2b6b1ddfaebb 125004 debug optional ecopcr-dbgsym_1.0.1+dfsg-4_armhf.deb
3062f96ee50b2e7f9774e655277c3ca9 5465 science optional ecopcr_1.0.1+dfsg-4_armhf.buildinfo
323d52b5b7c171c7e9fb153ecbfd6a96 50040 science optional ecopcr_1.0.1+dfsg-4_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: ecopcr
Binary: ecopcr ecopcr-dbgsym
Architecture: armhf
Version: 1.0.1+dfsg-4
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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4130d39ac649f166627c347834220449b72a1b1f403274885dba2b46bb22f68e 50040 ecopcr_1.0.1+dfsg-4_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 06 Feb 2022 04:53:03 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.1),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 12+rpi1),
base-passwd (= 3.5.52),
bash (= 5.1-5),
binutils (= 2.37-7+rpi1),
binutils-arm-linux-gnueabihf (= 2.37-7+rpi1),
binutils-common (= 2.37-7+rpi1),
bsdextrautils (= 2.37.3-1),
bsdutils (= 1:2.37.2-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4.1),
cpp (= 4:11.2.0-2+rpi1),
cpp-11 (= 11.2.0-10+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-3),
debconf (= 1.5.79),
debhelper (= 13.6),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-python (= 5.20220119),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.20.9+rpi1),
dpkg-dev (= 1.20.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-2),
findutils (= 4.8.0-1),
g++ (= 4:11.2.0-2+rpi1),
g++-11 (= 11.2.0-10+rpi1),
gcc (= 4:11.2.0-2+rpi1),
gcc-11 (= 11.2.0-10+rpi1),
gcc-11-base (= 11.2.0-10+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.10-4),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 11.2.0-10+rpi1),
libatomic1 (= 11.2.0-10+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.6-1),
libaudit1 (= 1:3.0.6-1),
libbinutils (= 2.37-7+rpi1),
libblkid1 (= 2.37.2-4),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.32-4+rpi1),
libc-dev-bin (= 2.32-4+rpi1),
libc6 (= 2.32-4+rpi1),
libc6-dev (= 2.32-4+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 11.2.0-10+rpi1),
libcom-err2 (= 1.46.4-1),
libcrypt-dev (= 1:4.4.26-1),
libcrypt1 (= 1:4.4.26-1),
libctf-nobfd0 (= 2.37-7+rpi1),
libctf0 (= 2.37-7+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.261),
libdebhelper-perl (= 13.6),
libdpkg-perl (= 1.20.9+rpi1),
libelf1 (= 0.186-1),
libexpat1 (= 2.4.3-3),
libffi8 (= 3.4.2-3),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-11-dev (= 11.2.0-10+rpi1),
libgcc-s1 (= 11.2.0-10+rpi1),
libgcrypt20 (= 1.9.4-3),
libgdbm-compat4 (= 1.22-1),
libgdbm6 (= 1.22-1),
libgmp10 (= 2:6.2.1+dfsg-3),
libgomp1 (= 11.2.0-10+rpi1),
libgpg-error0 (= 1.42-3),
libgssapi-krb5-2 (= 1.18.3-7),
libicu67 (= 67.1-7),
libisl23 (= 0.24-2),
libk5crypto3 (= 1.18.3-7),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-7),
libkrb5support0 (= 1.18.3-7),
liblz4-1 (= 1.9.3-2),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.41-2),
libmagic1 (= 1:5.41-2),
libmount1 (= 2.37.2-4),
libmpc3 (= 1.2.1-1),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libpam-modules (= 1.4.0-10),
libpam-modules-bin (= 1.4.0-10),
libpam-runtime (= 1.4.0-10),
libpam0g (= 1.4.0-10),
libpcre2-8-0 (= 10.39-3),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-6),
libpipeline1 (= 1.5.5-1),
libpython3-stdlib (= 3.9.7-1+b4),
libpython3.9-minimal (= 3.9.10-1+rpi1),
libpython3.9-stdlib (= 3.9.10-1+rpi1),
libreadline8 (= 8.1-2),
libseccomp2 (= 2.5.3-2+rpi1),
libselinux1 (= 3.3-1),
libsigsegv2 (= 2.14-1),
libsmartcols1 (= 2.37.2-4),
libsqlite3-0 (= 3.36.0-2),
libssl1.1 (= 1.1.1l-1),
libstdc++-11-dev (= 11.2.0-10+rpi1),
libstdc++6 (= 11.2.0-10+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 249.7-1+rpi1),
libtinfo6 (= 6.3-1),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.6-15),
libubsan1 (= 11.2.0-10+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 249.7-1+rpi1),
libunistring2 (= 0.9.10-6),
libuuid1 (= 2.37.2-4),
libxml2 (= 2.9.12+dfsg-5),
libzstd1 (= 1.4.8+dfsg-3+rpi1),
linux-libc-dev (= 5.14.16-1+rpi1),
login (= 1:4.8.1-2),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.9.4-4),
mawk (= 1.3.4.20200120-2),
media-types (= 5.0.0),
ncurses-base (= 6.3-1),
ncurses-bin (= 6.3-1),
patch (= 2.7.6-7),
perl (= 5.32.1-6),
perl-base (= 5.32.1-6),
perl-modules-5.32 (= 5.32.1-6),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.9.7-1+b4),
python3-distutils (= 3.9.10-1),
python3-lib2to3 (= 3.9.10-1),
python3-minimal (= 3.9.7-1+b4),
python3.9 (= 3.9.10-1+rpi1),
python3.9-minimal (= 3.9.10-1+rpi1),
readline-common (= 8.1-2),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.00-1),
tar (= 1.34+dfsg-1),
tzdata (= 2021e-1),
util-linux (= 2.37.2-4),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1643896237"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ecopcr-dbgsym_1.0.1+dfsg-4_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 125004 bytes: control archive=744 bytes.
499 bytes, 12 lines control
510 bytes, 5 lines md5sums
Package: ecopcr-dbgsym
Source: ecopcr
Version: 1.0.1+dfsg-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 169
Depends: ecopcr (= 1.0.1+dfsg-4)
Section: debug
Priority: optional
Description: debug symbols for ecopcr
Build-Ids: 17a61586e2b0fb8c5d706fd8a62816ee2cadbeb9 4f4c5e3944d793650dc638f9f62c818afce22903 7d07821edcc2aa813272587d0b76f08107ef8c84 c06706000a2d2443f80eaea3fe6d22b9efedb4d6
drwxr-xr-x root/root 0 2022-02-03 13:50 ./
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.build-id/17/
-rw-r--r-- root/root 43880 2022-02-03 13:50 ./usr/lib/debug/.build-id/17/a61586e2b0fb8c5d706fd8a62816ee2cadbeb9.debug
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root 27328 2022-02-03 13:50 ./usr/lib/debug/.build-id/4f/4c5e3944d793650dc638f9f62c818afce22903.debug
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.build-id/7d/
-rw-r--r-- root/root 57940 2022-02-03 13:50 ./usr/lib/debug/.build-id/7d/07821edcc2aa813272587d0b76f08107ef8c84.debug
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root 19168 2022-02-03 13:50 ./usr/lib/debug/.build-id/c0/6706000a2d2443f80eaea3fe6d22b9efedb4d6.debug
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 7772 2022-02-03 13:50 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ecopcr.debug
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-03 13:50 ./usr/share/doc/ecopcr-dbgsym -> ecopcr
ecopcr_1.0.1+dfsg-4_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 50040 bytes: control archive=1560 bytes.
1462 bytes, 27 lines control
985 bytes, 16 lines md5sums
Package: ecopcr
Version: 1.0.1+dfsg-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 196
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), python3:any, python3-reportlab
Section: science
Priority: optional
Homepage: https://git.metabarcoding.org/obitools/ecopcr/wikis/home
Description: estimate PCR barcode primers quality
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
.
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software
drwxr-xr-x root/root 0 2022-02-03 13:50 ./
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/bin/
-rwxr-xr-x root/root 47048 2022-02-03 13:50 ./usr/bin/ecoPCR
-rwxr-xr-x root/root 8805 2022-02-03 13:50 ./usr/bin/ecoPCRFilter
-rwxr-xr-x root/root 16807 2022-02-03 13:50 ./usr/bin/ecoPCRFormat
-rwxr-xr-x root/root 22118 2022-02-03 13:50 ./usr/bin/ecoSort
-rwxr-xr-x root/root 18028 2022-02-03 13:50 ./usr/bin/ecofind
-rwxr-xr-x root/root 30664 2022-02-03 13:50 ./usr/bin/ecogrep
-rwxr-xr-x root/root 13932 2022-02-03 13:50 ./usr/bin/ecoisundertaxon
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/doc/ecopcr/
-rw-r--r-- root/root 438 2022-02-03 13:50 ./usr/share/doc/ecopcr/README.test
-rw-r--r-- root/root 690 2022-02-03 13:50 ./usr/share/doc/ecopcr/changelog.Debian.gz
-rw-r--r-- root/root 22357 2022-02-03 13:50 ./usr/share/doc/ecopcr/copyright
-rw-r--r-- root/root 430 2022-02-03 13:50 ./usr/share/doc/ecopcr/run-unit-test
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/man/
drwxr-xr-x root/root 0 2022-02-03 13:50 ./usr/share/man/man1/
-rw-r--r-- root/root 1243 2022-02-03 13:50 ./usr/share/man/man1/ecoPCR.1.gz
-rw-r--r-- root/root 464 2022-02-03 13:50 ./usr/share/man/man1/ecoPCRFormat.1.gz
-rw-r--r-- root/root 746 2022-02-03 13:50 ./usr/share/man/man1/ecofind.1.gz
-rw-r--r-- root/root 646 2022-02-03 13:50 ./usr/share/man/man1/ecogrep.1.gz
-rw-r--r-- root/root 558 2022-02-03 13:50 ./usr/share/man/man1/ecoisundertaxon.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 38176
Build-Time: 24
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 330
Job: ecopcr_1.0.1+dfsg-4
Machine Architecture: armhf
Package: ecopcr
Package-Time: 389
Source-Version: 1.0.1+dfsg-4
Space: 38176
Status: successful
Version: 1.0.1+dfsg-4
--------------------------------------------------------------------------------
Finished at 2022-02-06T04:53:04Z
Build needed 00:06:29, 38176k disk space