diamond-aligner →
0.9.22+dfsg-2 →
armhf → 2018-08-24 05:00:40
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| diamond-aligner 0.9.22+dfsg-2 (armhf) Fri, 24 Aug 2018 04:39:03 +0000 |
+==============================================================================+
Package: diamond-aligner
Version: 0.9.22+dfsg-2
Source Version: 0.9.22+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-778a09cc-d61a-45a8-acc9-a42729c153c5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.7 MB in 29s (814 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/diamond-aligner.git
Please use:
git clone https://salsa.debian.org/med-team/diamond-aligner.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 239 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.22+dfsg-2 (dsc) [2071 B]
Get:2 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.22+dfsg-2 (tar) [231 kB]
Get:3 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.22+dfsg-2 (diff) [6372 B]
Fetched 239 kB in 0s (1060 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/diamond-aligner-Tlrmld/diamond-aligner-0.9.22+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/diamond-aligner-Tlrmld' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4VPvDH/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4VPvDH/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4VPvDH/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2968 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15721 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev
Filtered Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-diamond-aligner-dummy' in '/<<BUILDDIR>>/resolver-4VPvDH/apt_archive/sbuild-build-depends-diamond-aligner-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-diamond-aligner-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Sources [510 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ Packages [588 B]
Fetched 2431 B in 1s (3505 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install diamond-aligner build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libcroco3 libcurl4 libelf1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libicu-le-hb0 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libtimedate-perl libtool
libuv1 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libcroco3 libcurl4 libelf1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libicu-le-hb0 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libtimedate-perl libtool
libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-diamond-aligner-dummy zlib1g-dev
0 upgraded, 54 newly installed, 0 to remove and 15 not upgraded.
Need to get 25.6 MB/26.8 MB of archives.
After this operation, 94.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4VPvDH/apt_archive ./ sbuild-build-depends-diamond-aligner-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.3 [12.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1 [771 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.12.1-1 [1436 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.8-2+rpi1 [860 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-4.2 [253 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.6-2 [97.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.22.0-3 [93.3 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.12.1-1 [2550 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.62-2 [96.6 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up m4 (1.4.18-1) ...
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Setting up libfreetype6:armhf (2.8.1-2) ...
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Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Setting up librhash0:armhf (1.3.6-2) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libkeyutils1:armhf (1.5.9-9.3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up autopoint (0.19.8.1-7) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2.1) ...
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Setting up libkrb5-3:armhf (1.16-2) ...
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Setting up libcurl4:armhf (7.61.0-1) ...
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Setting up cmake (3.12.1-1) ...
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Processing triggers for libc-bin (2.27-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.1.0-12+rpi1 gcc-8_8.1.0-12+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.12.1-1 cmake-data_3.12.1-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.1.0-12+rpi1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 g++_4:8.1.0-1+rpi1 g++-8_8.1.0-12+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.1.0-12+rpi1 gcc-8-base_8.1.0-12+rpi1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.62-2 libarchive13_3.2.2-4.2 libargon2-1_0~20171227-0.1 libasan5_8.1.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.1.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.31.1-2+rpi1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-12+rpi1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libcurl4_7.61.0-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-8-dev_8.1.0-12+rpi1 libgcc1_1:8.1.0-12+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.1.0-12+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2 libharfbuzz0b_1.8.8-2+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 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libreadline7_7.0-5 librhash0_1.3.6-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssh2-1_1.8.0-2 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 libsystemd0_239-7 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-2.1 libubsan1_8.1.0-12+rpi1 libudev1_239-7 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libuv1_1.22.0-3 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mount_2.32.1-0.1 multiarch-support_2.27-5+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-diamond-aligner-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7 systemd-sysv_239-7 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_239-7 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Aug 19 04:44:36 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./diamond-aligner_0.9.22+dfsg-2.dsc
dpkg-source: info: extracting diamond-aligner in /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg
dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg.orig.tar.xz
dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg-2.debian.tar.xz
dpkg-source: info: applying avoid_unwanted_optimisation.patch
dpkg-source: info: applying no_march_native.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-778a09cc-d61a-45a8-acc9-a42729c153c5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package diamond-aligner
dpkg-buildpackage: info: source version 0.9.22+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build diamond-aligner-0.9.22+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" ..
-- The C compiler identification is GNU 8.1.0
-- The CXX compiler identification is GNU 8.1.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg -B/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/diamond.dir/DependInfo.cmake --color=
Scanning dependencies of target diamond
make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o
[ 2%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp
[ 3%] Building CXX object CMakeFiles/diamond.dir/src/util/tinythread.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/basic/config.cpp
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/util/tinythread.cpp
[ 4%] Building CXX object CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/basic/score_matrix.cpp
[ 5%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/blast_filter.cpp
[ 7%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/blast_seg.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/../util.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/output_file.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/text_input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/match_file.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/compare.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _OutputIterator = blast_match*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2639:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__move_merge(_InputIterator __first1, _InputIterator __last1,
^~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2639:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2639:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2639:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = blast_match*; _OutputIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2639:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
[ 8%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum45.c
[ 9%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum50.c
[ 10%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum62.c
[ 11%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum80.c
[ 13%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum90.c
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Pointer = blast_match*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2705:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_sort_with_buffer(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2705:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2705:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2695:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + __chunk_size, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2698:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2674:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__result = std::__move_merge(__first, __first + __step_size,
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__first + __step_size,
~~~~~~~~~~~~~~~~~~~~~~
__first + __two_step,
~~~~~~~~~~~~~~~~~~~~~
__result, __comp);
~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2674:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2682:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__move_merge(__first, __first + __step_size,
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__first + __step_size, __last, __result, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2682:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2674:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__result = std::__move_merge(__first, __first + __step_size,
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__first + __step_size,
~~~~~~~~~~~~~~~~~~~~~~
__first + __two_step,
~~~~~~~~~~~~~~~~~~~~~
__result, __comp);
~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2682:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__move_merge(__first, __first + __step_size,
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__first + __step_size, __last, __result, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2682:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2698:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam30.c
[ 15%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam70.c
[ 16%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam250.c
[ 17%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/queries.cpp
/usr/include/c++/8/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >]’:
/usr/include/c++/8/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__rotate(_RandomAccessIterator __first,
^~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
[ 19%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/reference.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/reference.cpp
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_without_buffer(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1443:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
return std::__rotate(__first, __middle, __last,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2518:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __first_cut, __new_middle,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len11, __len22, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2520:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__new_middle, __second_cut, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len1 - __len11, __len2 - __len22, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2761:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__inplace_stable_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2761:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algo.h:62,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/../util.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/output_file.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/text_input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/match_file.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/compare.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp:22:
/usr/include/c++/8/bits/stl_tempbuf.h: In constructor ‘std::_Temporary_buffer<_ForwardIterator, _Tp>::_Temporary_buffer(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Tp = blast_match]’:
/usr/include/c++/8/bits/stl_tempbuf.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_Temporary_buffer<_ForwardIterator, _Tp>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tempbuf.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../basic/config.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const blast_match&}; _Tp = blast_match; _Alloc = std::allocator<blast_match>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<blast_match>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../basic/config.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘bool match_file::get_read(match_file::mcont&, const _format&) [with _format = blast_tab_format_with_rawscore]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function ‘bool match_file::get_read(match_file::mcont&, const _format&) [with _format = blast_tab_format]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/../util.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/output_file.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/../util/io/text_input_file.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/match_file.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../extra/compare.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _BidirectionalIterator2 = blast_match*; _Distance = int]’:
/usr/include/c++/8/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__rotate_adaptive(_BidirectionalIterator1 __first,
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1443:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
return std::__rotate(__first, __middle, __last,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/seed_histogram.cpp
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Distance = int; _Pointer = blast_match*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_adaptive(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2460:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
= std::__rotate_adaptive(__first_cut, __middle, __second_cut,
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len1 - __len11, __len22, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size);
~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2463:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len22, __buffer, __buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2465:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__new_middle, __second_cut, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len1 - __len11,
~~~~~~~~~~~~~~~~~
__len2 - __len22, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Pointer = blast_match*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__stable_sort_adaptive(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void query_sens(match_file::mcont&, match_file::mcont&, Cmp_stats&)’:
/usr/include/c++/8/bits/stl_algo.h:5001:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_TmpBuf __buf(__first, __last);
^~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:5006:29: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __last, __buf.begin(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_DistanceType(__buf.size()), __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:5001:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_TmpBuf __buf(__first, __last);
^~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:5006:29: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __last, __buf.begin(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_DistanceType(__buf.size()), __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/../basic/config.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/reference.cpp:23:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Pos_record}; _Tp = Pos_record; _Alloc = std::allocator<Pos_record>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<Pos_record>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Pos_record*, std::vector<Pos_record> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function ‘void push_seq(const sequence&, const sequence&, uint64_t&, std::vector<Pos_record>&, OutputFile&, size_t&, size_t&)’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Pos_record*, std::vector<Pos_record> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 21%] Building CXX object CMakeFiles/diamond.dir/src/output/daa_record.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/daa_record.cpp
/usr/include/c++/8/bits/vector.tcc: In function ‘void make_db()’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Pos_record*, std::vector<Pos_record> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 22%] Building CXX object CMakeFiles/diamond.dir/src/search/search.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/search.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/search.cpp
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘bool DatabaseFile::load_seqs(std::vector<unsigned int>&, size_t, bool, bool, const std::vector<bool>*)’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/reference.cpp:296:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
}
^
[ 23%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/util.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/util/util.cpp
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/basic.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/basic/basic.cpp
[ 29%] Building CXX object CMakeFiles/diamond.dir/src/basic/hssp.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/basic/hssp.cpp
[ 30%] Building CXX object CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/dp/ungapped_align.cpp
[ 32%] Building CXX object CMakeFiles/diamond.dir/src/run/tools.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/tools.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/tools.cpp
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/dp/greedy_align.cpp
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/stage2.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/stage2.cpp
[ 35%] Building CXX object CMakeFiles/diamond.dir/src/output/output_format.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/output_format.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/output_format.cpp
[ 36%] Building CXX object CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/join_blocks.cpp
[ 38%] Building CXX object CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/frequent_seeds.cpp
[ 39%] Building CXX object CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/align/query_mapper.cpp
[ 40%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/blast_tab_format.cpp
[ 41%] Building CXX object CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/dp/padded_banded_sw.cpp
[ 42%] Building CXX object CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/dp/needleman_wunsch.cpp
[ 44%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/blast_pairwise_format.cpp
[ 45%] Building CXX object CMakeFiles/diamond.dir/src/extra/roc.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/roc.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/roc.cpp
[ 46%] Building CXX object CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/dp/comp_based_stats.cpp
[ 47%] Building CXX object CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/model_sim.cpp
[ 48%] Building CXX object CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/../data/reference.h:22,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/roc.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const blast_match&}; _Tp = blast_match; _Alloc = std::allocator<blast_match>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<blast_match>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/diamond.dir/src/search/collision.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/collision.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/collision.cpp
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = Seed_set]’:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:139:71: required from here
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array<unsigned int, 1024>’; use assignment or value-initialization instead [-Wclass-memaccess]
memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array<unsigned int, 1024>’ declared here
struct Array
^~~~~
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = Hashed_seed_set]’:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:141:77: required from here
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array<unsigned int, 1024>’; use assignment or value-initialization instead [-Wclass-memaccess]
memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array<unsigned int, 1024>’ declared here
struct Array
^~~~~
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = No_filter]’:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:143:70: required from here
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array<unsigned int, 1024>’; use assignment or value-initialization instead [-Wclass-memaccess]
memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array<unsigned int, 1024>’ declared here
struct Array
^~~~~
[ 51%] Building CXX object CMakeFiles/diamond.dir/src/output/sam_format.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/output/sam_format.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/../data/reference.h:22,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/extra/roc.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In function ‘void roc()’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 52%] Building CXX object CMakeFiles/diamond.dir/src/align/align.cpp.o
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[ 57%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o
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[ 64%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_set.cpp.o
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[ 65%] Building CXX object CMakeFiles/diamond.dir/src/util/simd.cpp.o
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[ 67%] Building CXX object CMakeFiles/diamond.dir/src/output/view.cpp.o
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[ 84%] Building CXX object CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o
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[ 85%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o
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[ 86%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o
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[ 88%] Building CXX object CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o
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[ 90%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o
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[ 91%] Building CXX object CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o
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[ 92%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o
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[ 94%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/data/seed_array.cpp
In file included from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp:20:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h: In instantiation of ‘HashTable<_K, _V, _HashFunction>::HashTable(size_t, const _HashFunction&) [with _K = unsigned int; _V = RelPtr; _HashFunction = ExtractBits; size_t = unsigned int]’:
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:52:8: required from ‘void hash_table_join(const Relation<_t>&, const Relation<_t>&, unsigned int, JoinResult<_t>&) [with _t = SeedArray::Entry]’
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:175:19: required from ‘void hash_join(const Relation<_t>&, const Relation<_t>&, JoinResult<_t>&, MemoryPool&, unsigned int, unsigned int) [with _t = SeedArray::Entry]’
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp:39:6: required from here
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h:42:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct HashTable<unsigned int, RelPtr, ExtractBits>::Entry’; use assignment or value-initialization instead [-Wclass-memaccess]
memset(table, 0, size_ * sizeof(Entry));
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h:28:9: note: ‘struct HashTable<unsigned int, RelPtr, ExtractBits>::Entry’ declared here
struct Entry : public _V
^~~~~
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make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
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make[2]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
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dh_auto_test -a
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fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
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cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/diamond-aligner-0.9.22\+dfsg/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg -B/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/diamond.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
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make[2]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/debian/diamond-aligner/usr/bin/diamond
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg/obj-arm-linux-gnueabihf'
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make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_install
# due to a file name conflict diamond is moved out of the way
mkdir -p debian/diamond-aligner/usr/lib/debian-med/bin/
mv debian/diamond-aligner/usr/bin/diamond debian/diamond-aligner/usr/lib/debian-med/bin/
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_installdocs -a
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make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_installman
# due to a file name conflict diamond.1 is moved out of the way
mkdir -p debian/diamond-aligner/usr/lib/debian-med/share/man/man1/
mv debian/diamond-aligner/usr/share/man/man1/diamond.1 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/
gzip -9 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/diamond.1
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_perl -a
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make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
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make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_fixperms
# strangely the manpage becomes executable ... hmmm
chmod -x debian/diamond-aligner/usr/lib/debian-med/share/man/man1/*
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.22+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/diamond-aligner/usr/lib/debian-med/bin/diamond contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/diamond-aligner/usr/lib/debian-med/bin/diamond was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_0.9.22+dfsg-2_armhf.deb'.
dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_0.9.22+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../diamond-aligner_0.9.22+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build diamond-aligner-0.9.22+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-08-24T05:00:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
diamond-aligner_0.9.22+dfsg-2_armhf.changes:
--------------------------------------------
Format: 1.8
Date: Sun, 19 Aug 2018 06:41:39 +0200
Source: diamond-aligner
Binary: diamond-aligner
Architecture: armhf
Version: 0.9.22+dfsg-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
diamond-aligner - accelerated BLAST compatible local sequence aligner
Closes: 906615
Changes:
diamond-aligner (0.9.22+dfsg-2) unstable; urgency=medium
.
* Do not use march=native flag
Closes: #906615
* Standards-Version: 4.2.0
Checksums-Sha1:
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d868c43d17c7248a048a0aa7cbfdc40d5ed8c848 5704 diamond-aligner_0.9.22+dfsg-2_armhf.buildinfo
9e4980309e66d9604cc286e2b7b17fbbc89e25b4 437720 diamond-aligner_0.9.22+dfsg-2_armhf.deb
Checksums-Sha256:
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Files:
bb9b7c16574a7b25e582f05d6a7ba9bd 8261060 debug optional diamond-aligner-dbgsym_0.9.22+dfsg-2_armhf.deb
f6597dec15d5120490e241caddd78e72 5704 science optional diamond-aligner_0.9.22+dfsg-2_armhf.buildinfo
294238d649a185420c5c95cc6248379d 437720 science optional diamond-aligner_0.9.22+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
diamond-aligner-dbgsym_0.9.22+dfsg-2_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 8261060 bytes: control archive=548 bytes.
415 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: diamond-aligner-dbgsym
Source: diamond-aligner
Version: 0.9.22+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8236
Depends: diamond-aligner (= 0.9.22+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for diamond-aligner
Build-Ids: 47a1576d4625a7754d01e6460d9885fb8228ce1b
drwxr-xr-x root/root 0 2018-08-19 04:41 ./
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debug/.build-id/47/
-rw-r--r-- root/root 8422844 2018-08-19 04:41 ./usr/lib/debug/.build-id/47/a1576d4625a7754d01e6460d9885fb8228ce1b.debug
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-08-19 04:41 ./usr/share/doc/diamond-aligner-dbgsym -> diamond-aligner
diamond-aligner_0.9.22+dfsg-2_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 437720 bytes: control archive=948 bytes.
783 bytes, 16 lines control
457 bytes, 6 lines md5sums
Package: diamond-aligner
Version: 0.9.22+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1162
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Recommends: med-config (>= 2.1)
Section: science
Priority: optional
Homepage: https://github.com/bbuchfink/diamond
Description: accelerated BLAST compatible local sequence aligner
DIAMOND is a sequence aligner for protein and translated DNA searches
and functions as a drop-in replacement for the NCBI BLAST software
tools. It is suitable for protein-protein search as well as DNA-protein
search on short reads and longer sequences including contigs and
assemblies, providing a speedup of BLAST ranging up to x20,000.
drwxr-xr-x root/root 0 2018-08-19 04:41 ./
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/bin/
lrwxrwxrwx root/root 0 2018-08-19 04:41 ./usr/bin/diamond-aligner -> ../lib/debian-med/bin/diamond
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1159932 2018-08-19 04:41 ./usr/lib/debian-med/bin/diamond
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/man/man1/
-rw-r--r-- root/root 2421 2018-08-19 04:41 ./usr/lib/debian-med/share/man/man1/diamond.1.gz
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/
-rw-r--r-- root/root 996 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/README.Debian
-rw-r--r-- root/root 3825 2018-05-11 15:19 ./usr/share/doc/diamond-aligner/README.rst
-rw-r--r-- root/root 582 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/changelog.Debian.gz
-rw-r--r-- root/root 2378 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/copyright
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/man/
drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2018-08-19 04:41 ./usr/share/man/man1/diamond-aligner.1.gz -> ../../../lib/debian-med/share/man/man1/diamond.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 92228
Build-Time: 589
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 636
Job: diamond-aligner_0.9.22+dfsg-2
Machine Architecture: armhf
Package: diamond-aligner
Package-Time: 1282
Source-Version: 0.9.22+dfsg-2
Space: 92228
Status: successful
Version: 0.9.22+dfsg-2
--------------------------------------------------------------------------------
Finished at 2018-08-24T05:00:25Z
Build needed 00:21:22, 92228k disc space