diamond-aligner →
0.9.17+dfsg-1 →
armhf → 2018-02-16 04:58:48
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| diamond-aligner 0.9.17+dfsg-1 (armhf) Fri, 16 Feb 2018 04:43:24 +0000 |
+==============================================================================+
Package: diamond-aligner
Version: 0.9.17+dfsg-1
Source Version: 0.9.17+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-d02c8a87-8101-4e2d-a941-05fbe588d76b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
Fetched 22.9 MB in 28s (809 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/diamond-aligner.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/diamond-aligner.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 223 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.17+dfsg-1 (dsc) [2088 B]
Get:2 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.17+dfsg-1 (tar) [215 kB]
Get:3 http://172.17.0.1/private buster-staging/main diamond-aligner 0.9.17+dfsg-1 (diff) [5940 B]
Fetched 223 kB in 0s (907 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/diamond-aligner-t0COmB/diamond-aligner-0.9.17+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/diamond-aligner-t0COmB' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kKrA9E/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kKrA9E/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kKrA9E/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2769 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15377 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev
Filtered Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-diamond-aligner-dummy' in '/<<BUILDDIR>>/resolver-kKrA9E/apt_archive/sbuild-build-depends-diamond-aligner-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-diamond-aligner-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Sources [510 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ Packages [589 B]
Fetched 2432 B in 1s (3151 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install diamond-aligner build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libbsd0
libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser apparmor
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libbsd0
libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-diamond-aligner-dummy zlib1g-dev
0 upgraded, 50 newly installed, 0 to remove and 46 not upgraded.
Need to get 24.8 MB/25.2 MB of archives.
After this operation, 90.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kKrA9E/apt_archive ./ sbuild-build-depends-diamond-aligner-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.5-1 [1285 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.29.0-1 [70.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.5-1 [2439 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
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update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
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Processing triggers for libc-bin (2.26-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Feb 10 17:15:15 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./diamond-aligner_0.9.17+dfsg-1.dsc
dpkg-source: info: extracting diamond-aligner in /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg
dpkg-source: info: unpacking diamond-aligner_0.9.17+dfsg.orig.tar.xz
dpkg-source: info: unpacking diamond-aligner_0.9.17+dfsg-1.debian.tar.xz
dpkg-source: info: applying avoid_unwanted_optimisation.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-d02c8a87-8101-4e2d-a941-05fbe588d76b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package diamond-aligner
dpkg-buildpackage: info: source version 0.9.17+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build diamond-aligner-0.9.17+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_MARCHNATIVE
-- Performing Test COMPILER_SUPPORTS_MARCHNATIVE - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg -B/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/diamond.dir/DependInfo.cmake --color=
Scanning dependencies of target diamond
make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/basic/config.cpp
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/util/tinythread.cpp
[ 5%] Building CXX object CMakeFiles/diamond.dir/src/util/compressed_stream.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/compressed_stream.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/util/compressed_stream.cpp
[ 8%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o
[ 8%] Building CXX object CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/basic/score_matrix.cpp
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/blast_filter.cpp
[ 10%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/blast_seg.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/../basic/config.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/main.cpp:20:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const blast_match&}; _Tp = blast_match; _Alloc = std::allocator<blast_match>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<blast_match>::iterator {aka __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/../extra/../util/util.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/../extra/match_file.h:26,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/../extra/compare.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/main.cpp:22:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
[ 11%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_blosum45.c
[ 13%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_blosum50.c
[ 14%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_blosum62.c
[ 16%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_blosum80.c
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Pointer = blast_match*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:2705:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_sort_with_buffer(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2705:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2695:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + __chunk_size, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2698:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_blosum90.c
/usr/include/c++/7/bits/stl_algo.h:2698:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
[ 19%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_pam30.c
[ 20%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_pam70.c
[ 22%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o
/usr/bin/cc -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/blast/sm_pam250.c
[ 23%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/data/queries.cpp
[ 25%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/reference.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/data/reference.cpp
/usr/include/c++/7/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >]’:
/usr/include/c++/7/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__rotate(_RandomAccessIterator __first,
^~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_without_buffer(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2476:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1444:40: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/7/bits/stl_algo.h:2518:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __first_cut, __new_middle,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len11, __len22, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2520:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__new_middle, __second_cut, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len1 - __len11, __len2 - __len22, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:2761:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__inplace_stable_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2761:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _BidirectionalIterator2 = blast_match*; _Distance = int]’:
/usr/include/c++/7/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__rotate_adaptive(_BidirectionalIterator1 __first,
^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2373:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1444:40: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Distance = int; _Pointer = blast_match*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__merge_adaptive(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2415:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2459:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_BidirectionalIterator __new_middle
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2463:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len22, __buffer, __buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2465:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__new_middle, __second_cut, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__len1 - __len11,
~~~~~~~~~~~~~~~~~
__len2 - __len22, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >; _Pointer = blast_match*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
__stable_sort_adaptive(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2732:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void query_sens(match_file::mcont&, match_file::mcont&, Cmp_stats&)’:
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2766:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2770:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2771:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2772:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
__middle - __first,
~~~~~~~~~~~~~~~~~~~
__last - __middle,
~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
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__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
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__buffer_size, __comp);
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/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
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__buffer_size, __comp);
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/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
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/usr/include/c++/7/bits/stl_algo.h:2741:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2743:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer_size, __comp);
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__middle - __first),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__buffer, __buffer_size,
~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:2751:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_Distance(__last - __middle),
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__buffer, __buffer_size,
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~~~~~~~
[ 26%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/data/seed_histogram.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/../basic/config.h:23,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/run/main.cpp:20:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void compare()’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
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/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<blast_match*, std::vector<blast_match> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 28%] Building CXX object CMakeFiles/diamond.dir/src/output/daa_record.cpp.o
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In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/data/../basic/config.h:23,
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/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Pos_record}; _Tp = Pos_record; _Alloc = std::allocator<Pos_record>]’:
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vector<_Tp, _Alloc>::
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/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Pos_record*, std::vector<Pos_record> >’ changed in GCC 7.1
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[ 31%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/util/command_line_parser.cpp
/usr/include/c++/7/bits/vector.tcc: In function ‘void make_db()’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Pos_record*, std::vector<Pos_record> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
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[ 34%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o
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[ 35%] Building CXX object CMakeFiles/diamond.dir/src/util/Timer.cpp.o
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[ 37%] Building CXX object CMakeFiles/diamond.dir/src/basic/basic.cpp.o
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[ 43%] Building CXX object CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o
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[ 44%] Building CXX object CMakeFiles/diamond.dir/src/search/stage2.cpp.o
/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/stage2.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/search/stage2.cpp
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/usr/bin/c++ -I/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/output_format.cpp.o -c /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/src/output/output_format.cpp
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[ 49%] Building CXX object CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o
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[ 52%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o
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vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
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_M_realloc_insert(end(), __x);
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[100%] Linking CXX executable diamond
/usr/bin/cmake -E cmake_link_script CMakeFiles/diamond.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/diamond.dir/src/run/main.cpp.o CMakeFiles/diamond.dir/src/basic/config.cpp.o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o CMakeFiles/diamond.dir/src/util/compressed_stream.cpp.o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o CMakeFiles/diamond.dir/src/data/queries.cpp.o CMakeFiles/diamond.dir/src/data/reference.cpp.o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o CMakeFiles/diamond.dir/src/search/search.cpp.o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o CMakeFiles/diamond.dir/src/util/util.cpp.o CMakeFiles/diamond.dir/src/util/Timer.cpp.o CMakeFiles/diamond.dir/src/basic/basic.cpp.o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o CMakeFiles/diamond.dir/src/run/tools.cpp.o CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o CMakeFiles/diamond.dir/src/search/stage2.cpp.o CMakeFiles/diamond.dir/src/output/output_format.cpp.o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o CMakeFiles/diamond.dir/src/extra/roc.cpp.o CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o CMakeFiles/diamond.dir/src/search/collision.cpp.o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o CMakeFiles/diamond.dir/src/align/align.cpp.o CMakeFiles/diamond.dir/src/search/setup.cpp.o CMakeFiles/diamond.dir/src/extra/opt.cpp.o CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o CMakeFiles/diamond.dir/src/basic/masking.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o CMakeFiles/diamond.dir/src/util/binary_file.cpp.o CMakeFiles/diamond.dir/src/util/simd.cpp.o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o CMakeFiles/diamond.dir/src/output/view.cpp.o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o CMakeFiles/diamond.dir/src/align/greedy_pipeline.cpp.o CMakeFiles/diamond.dir/src/align/swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o -o diamond -lz -lpthread
make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target diamond
make[2]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/diamond-aligner-0.9.17\+dfsg/debian/diamond-aligner AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg -B/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/diamond.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'CMakeFiles/diamond.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target diamond
make[2]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/debian/diamond-aligner/usr/bin/diamond
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_install
# due to a file name conflict diamond is moved out of the way
mkdir -p debian/diamond-aligner/usr/lib/debian-med/bin/
mv debian/diamond-aligner/usr/bin/diamond debian/diamond-aligner/usr/lib/debian-med/bin/
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_installman
# due to a file name conflict diamond.1 is moved out of the way
mkdir -p debian/diamond-aligner/usr/lib/debian-med/share/man/man1/
mv debian/diamond-aligner/usr/share/man/man1/diamond.1 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/
gzip -9 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/diamond.1
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_fixperms
# strangely the manpage becomes executable ... hmmm
chmod -x debian/diamond-aligner/usr/lib/debian-med/share/man/man1/*
make[1]: Leaving directory '/<<BUILDDIR>>/diamond-aligner-0.9.17+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/diamond-aligner/usr/lib/debian-med/bin/diamond contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/diamond-aligner/usr/lib/debian-med/bin/diamond was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_0.9.17+dfsg-1_armhf.deb'.
dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_0.9.17+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../diamond-aligner_0.9.17+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build diamond-aligner-0.9.17+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-16T04:58:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
diamond-aligner_0.9.17+dfsg-1_armhf.changes:
--------------------------------------------
Format: 1.8
Date: Sat, 10 Feb 2018 18:10:44 +0100
Source: diamond-aligner
Binary: diamond-aligner
Architecture: armhf
Version: 0.9.17+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
diamond-aligner - accelerated BLAST compatible local sequence aligner
Changes:
diamond-aligner (0.9.17+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
Checksums-Sha1:
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8184d3cd0c95b909e0cf8d53809b07683e13c3cc 5459 diamond-aligner_0.9.17+dfsg-1_armhf.buildinfo
cc63f8797b1d19956b0a00bc1bf1b20a8a8d20a5 386412 diamond-aligner_0.9.17+dfsg-1_armhf.deb
Checksums-Sha256:
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8ba5e640b449b88dc8418c39ae3c3c10145c1ced65044fa64a47d04c952742b0 5459 diamond-aligner_0.9.17+dfsg-1_armhf.buildinfo
fa8c19dc31b3682838f66f6ca51b81de06aafe5d4ab8493d9de66755846a6239 386412 diamond-aligner_0.9.17+dfsg-1_armhf.deb
Files:
4fe89de35f25572cabc872d074b3a5af 5293228 debug optional diamond-aligner-dbgsym_0.9.17+dfsg-1_armhf.deb
61348aed450251bba6ad03be2a81e627 5459 science optional diamond-aligner_0.9.17+dfsg-1_armhf.buildinfo
26f9c40c863db2fa1a6501bd83009fdb 386412 science optional diamond-aligner_0.9.17+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
diamond-aligner-dbgsym_0.9.17+dfsg-1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 5293228 bytes: control archive=548 bytes.
415 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: diamond-aligner-dbgsym
Source: diamond-aligner
Version: 0.9.17+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5293
Depends: diamond-aligner (= 0.9.17+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for diamond-aligner
Build-Ids: e2c5b4d177938326ac2bd307782dc5b08d4c9d4a
drwxr-xr-x root/root 0 2018-02-10 17:10 ./
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root 5409064 2018-02-10 17:10 ./usr/lib/debug/.build-id/e2/c5b4d177938326ac2bd307782dc5b08d4c9d4a.debug
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-02-10 17:10 ./usr/share/doc/diamond-aligner-dbgsym -> diamond-aligner
diamond-aligner_0.9.17+dfsg-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 386412 bytes: control archive=948 bytes.
783 bytes, 16 lines control
460 bytes, 6 lines md5sums
Package: diamond-aligner
Version: 0.9.17+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1004
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Recommends: med-config (>= 2.1)
Section: science
Priority: optional
Homepage: https://github.com/bbuchfink/diamond
Description: accelerated BLAST compatible local sequence aligner
DIAMOND is a sequence aligner for protein and translated DNA searches
and functions as a drop-in replacement for the NCBI BLAST software
tools. It is suitable for protein-protein search as well as DNA-protein
search on short reads and longer sequences including contigs and
assemblies, providing a speedup of BLAST ranging up to x20,000.
drwxr-xr-x root/root 0 2018-02-10 17:10 ./
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/bin/
lrwxrwxrwx root/root 0 2018-02-10 17:10 ./usr/bin/diamond-aligner -> ../lib/debian-med/bin/diamond
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1000176 2018-02-10 17:10 ./usr/lib/debian-med/bin/diamond
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/lib/debian-med/share/man/man1/
-rw-r--r-- root/root 2421 2018-02-10 17:10 ./usr/lib/debian-med/share/man/man1/diamond.1.gz
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/doc/diamond-aligner/
-rw-r--r-- root/root 996 2018-02-10 17:10 ./usr/share/doc/diamond-aligner/README.Debian
-rw-r--r-- root/root 1903 2018-02-01 18:55 ./usr/share/doc/diamond-aligner/README.rst.gz
-rw-r--r-- root/root 455 2018-02-10 17:10 ./usr/share/doc/diamond-aligner/changelog.Debian.gz
-rw-r--r-- root/root 2378 2018-02-10 17:10 ./usr/share/doc/diamond-aligner/copyright
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/man/
drwxr-xr-x root/root 0 2018-02-10 17:10 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2018-02-10 17:10 ./usr/share/man/man1/diamond-aligner.1.gz -> ../../../lib/debian-med/share/man/man1/diamond.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 60132
Build-Time: 466
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 393
Job: diamond-aligner_0.9.17+dfsg-1
Machine Architecture: armhf
Package: diamond-aligner
Package-Time: 913
Source-Version: 0.9.17+dfsg-1
Space: 60132
Status: successful
Version: 0.9.17+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-02-16T04:58:37Z
Build needed 00:15:13, 60132k disc space