delly →
1.1.5-1 →
armhf → 2022-10-02 21:22:33
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| delly 1.1.5-1 (armhf) Sun, 02 Oct 2022 21:14:30 +0000 |
+==============================================================================+
Package: delly
Version: 1.1.5-1
Source Version: 1.1.5-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-7b2c283b-7dcc-46d4-af29-55f063bdf6d9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.5 MB in 11s (2538 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'delly' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/delly.git
Please use:
git clone https://salsa.debian.org/med-team/delly.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3736 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main delly 1.1.5-1 (dsc) [2114 B]
Get:2 http://172.17.4.1/private bookworm-staging/main delly 1.1.5-1 (tar) [3728 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main delly 1.1.5-1 (diff) [5180 B]
Fetched 3736 kB in 0s (10.7 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/delly-XzdUU6/delly-1.1.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/delly-XzdUU6' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gMCigv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gMCigv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gMCigv/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Packages [429 B]
Fetched 2105 B in 0s (8025 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (66.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12808 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper
Filtered Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper
dpkg-deb: building package 'sbuild-build-depends-delly-dummy' in '/<<BUILDDIR>>/resolver-gMCigv/apt_archive/sbuild-build-depends-delly-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-delly-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Sources [562 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ Packages [634 B]
Fetched 2529 B in 0s (12.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install delly build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu71 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librtmp1 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-graph1.74-dev libboost-graph-parallel1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev
libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev
libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config icu-doc liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu71 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librtmp1 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-delly-dummy zlib1g-dev
0 upgraded, 68 newly installed, 0 to remove and 5 not upgraded.
Need to get 48.5 MB of archives.
After this operation, 306 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gMCigv/apt_archive ./ sbuild-build-depends-delly-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17 [9534 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-17 [242 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-17 [322 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-17 [387 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-17 [251 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b4 [4604 B]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libboost-filesystem1.74.0 armhf 1.74.0-17 [274 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-17 [242 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-17 [244 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libboost-filesystem1.74-dev armhf 1.74.0-17 [285 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libboost-filesystem-dev armhf 1.74.0.3+b4 [4636 B]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-17 [444 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-17 [550 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-17 [260 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-17 [270 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b4 [4592 B]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-17 [332 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-17 [370 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b4 [4616 B]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b4 [4744 B]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.85.0-1 [397 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.12-1 [51.8 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.2.2-1 [53.1 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2+b1 [339 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libhts-dev armhf 1.13+ds-2+b1 [4045 kB]
debconf: delaying package configuration, since apt-utils is not installed
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-3+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-1+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-3+rpi1 binutils-arm-linux-gnueabihf_2.39-3+rpi1 binutils-common_2.39-3+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 chrpath_0.16-2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 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libboost-regex1.74-dev_1.74.0-17 libboost-regex1.74.0_1.74.0-17 libboost-serialization1.74-dev_1.74.0-17 libboost-serialization1.74.0_1.74.0-17 libboost-system-dev_1.74.0.3+b4 libboost-system1.74-dev_1.74.0-17 libboost-system1.74.0_1.74.0-17 libboost1.74-dev_1.74.0-17 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.35-1+rpi1 libc-dev-bin_2.35-1+rpi1 libc6_2.35-1+rpi1 libc6-dev_2.35-1+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-3+rpi1 libctf0_2.39-3+rpi1 libcurl3-gnutls_7.85.0-1 libcurl4-gnutls-dev_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhts-dev_1.13+ds-2+b1 libhts3_1.13+ds-2+b1 libhtscodecs2_1.2.2-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpsl5_0.21.0-1.2 libreadline8_8.2~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.3-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-3 libsystemd0_251.4-3+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.4-3+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-delly-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.hQfRNSHP/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 30 11:23:12 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./delly_1.1.5-1.dsc
dpkg-source: info: extracting delly in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking delly_1.1.5.orig.tar.xz
dpkg-source: info: unpacking delly_1.1.5-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying reproducible.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-7b2c283b-7dcc-46d4-af29-55f063bdf6d9
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package delly
dpkg-buildpackage: info: source version 1.1.5-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 distclean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi
rm -f src/delly src/delly.o
rm -f src/delly
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf src/dpe src/delly bin/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1
make -j4 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/
In file included from src/util.h:13,
from src/delly.h:32,
from src/delly.cpp:18:
src/tags.h:67:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
67 | struct SortSVs : public std::binary_function<TSV, TSV, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from src/delly.cpp:3:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
src/util.h:59:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
59 | struct SortCNVs : public std::binary_function<TCNV, TCNV, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/delly.h:35:
src/coverage.h:51:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
51 | struct SortBp : public std::binary_function<TRecord, TRecord, bool> {
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/shortpe.h:36,
from src/delly.h:38:
src/junction.h:37:40: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
37 | struct SortSRBamRecord : public std::binary_function<TSRBamRecord, TSRBamRecord, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
src/junction.h:80:37: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
80 | struct SortJunction : public std::binary_function<TJunction, TJunction, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/shortpe.h:37:
src/cluster.h:42:39: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
42 | struct SortBamRecords : public std::binary_function<TRecord, TRecord, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
src/cluster.h:71:40: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
71 | struct SortEdgeRecords : public std::binary_function<TRecord, TRecord, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/delly.cpp:21:
src/merge.h:67:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
67 | struct SortIScores : public std::binary_function<TRecord, TRecord, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/coral.h:17,
from src/delly.cpp:23:
src/scan.h:33:39: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
33 | struct SortScanWindow : public std::binary_function<TScanWindow, TScanWindow, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from src/coral.h:19:
src/cnv.h:42:41: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
42 | struct SortSVBreakpoint : public std::binary_function<TSVBp, TSVBp, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/include/arm-linux-gnueabihf/c++/12/bits/c++allocator.h:33,
from /usr/include/c++/12/bits/allocator.h:46,
from /usr/include/c++/12/string:41:
In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]',
inlined from 'typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<char>; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<char>; T = char]' at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from 'void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]' at /usr/include/boost/multi_array.hpp:548:29,
inlined from 'boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]' at /usr/include/boost/multi_array.hpp:156:19:
/usr/include/c++/12/bits/new_allocator.h:175:11: warning: 'void* __builtin_memset(void*, int, unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds]
175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const torali::CNV&}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<torali::CNV>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]',
inlined from 'void torali::parseVcfCNV(const TConfig&, bam_hdr_t*, std::vector<CNV>&) [with TConfig = CountDNAConfig]' at src/cnv.h:549:16:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {torali::BpCNV}; _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<torali::BpCNV>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {torali::CNV}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<torali::CNV>::iterator' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {torali::CNV}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void torali::mergeCNVs(const TConfig&, std::vector<CNV>&, std::vector<CNV>&) [with TConfig = CountDNAConfig]' at src/cnv.h:86:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]',
inlined from 'void torali::mergeCNVs(const TConfig&, std::vector<CNV>&, std::vector<CNV>&) [with TConfig = CountDNAConfig]' at src/cnv.h:88:20:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]',
inlined from 'void torali::mergeCNVs(const TConfig&, std::vector<CNV>&, std::vector<CNV>&) [with TConfig = CountDNAConfig]' at src/cnv.h:100:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/unordered/unordered_set.hpp:19,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:20:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<torali::SortCNVs<torali::CNV> >]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {torali::BpCNV}; _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void torali::callCNVs(const TConfig&, const std::pair<unsigned int, unsigned int>&, const std::vector<short unsigned int>&, const std::vector<short unsigned int>&, const TGcBias&, const TCoverage&, const bam_hdr_t*, int32_t, std::vector<CNV>&) [with TConfig = CountDNAConfig; TGcBias = std::vector<GcBias>; TCoverage = std::vector<short unsigned int>]' at src/cnv.h:366:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {torali::BpCNV}; _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void torali::callCNVs(const TConfig&, const std::pair<unsigned int, unsigned int>&, const std::vector<short unsigned int>&, const std::vector<short unsigned int>&, const TGcBias&, const TCoverage&, const bam_hdr_t*, int32_t, std::vector<CNV>&) [with TConfig = CountDNAConfig; TGcBias = std::vector<GcBias>; TCoverage = std::vector<short unsigned int>]' at src/cnv.h:396:35:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {torali::BpCNV}; _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void torali::callCNVs(const TConfig&, const std::pair<unsigned int, unsigned int>&, const std::vector<short unsigned int>&, const std::vector<short unsigned int>&, const TGcBias&, const TCoverage&, const bam_hdr_t*, int32_t, std::vector<CNV>&) [with TConfig = CountDNAConfig; TGcBias = std::vector<GcBias>; TCoverage = std::vector<short unsigned int>]' at src/cnv.h:417:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {torali::CNV}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void torali::callCNVs(const TConfig&, const std::pair<unsigned int, unsigned int>&, const std::vector<short unsigned int>&, const std::vector<short unsigned int>&, const TGcBias&, const TCoverage&, const bam_hdr_t*, int32_t, std::vector<CNV>&) [with TConfig = CountDNAConfig; TGcBias = std::vector<GcBias>; TCoverage = std::vector<short unsigned int>]' at src/cnv.h:474:16:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Distance = int; _Tp = torali::CNV; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'torali::BoLog<TPrecision>::BoLog() [with TPrecision = double]' at src/bolog.h:18:89,
inlined from 'void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = Config; TStructuralVariantRecord = StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<JunctionCount> >; TReadCountMap = std::vector<std::vector<ReadCount> >; TCountMap = std::vector<std::vector<SpanningCount> >]' at src/modvcf.h:404:17:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'torali::BoLog<TPrecision>::BoLog() [with TPrecision = double]' at src/bolog.h:18:89,
inlined from 'void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = TeguaConfig; TStructuralVariantRecord = StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<JunctionCount> >; TReadCountMap = std::vector<std::vector<ReadCount> >; TCountMap = std::vector<std::vector<SpanningCount> >]' at src/modvcf.h:404:17:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'torali::BoLog<TPrecision>::BoLog() [with TPrecision = double]' at src/bolog.h:18:89,
inlined from 'void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = AsmConfig; TStructuralVariantRecord = StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<JunctionCount> >; TReadCountMap = std::vector<std::vector<ReadCount> >; TCountMap = std::vector<std::vector<SpanningCount> >]' at src/modvcf.h:404:17:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]',
inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector<LibraryInfo>; TSVs = std::vector<StructuralVariantRecord>; TCoverageCount = std::vector<std::vector<ReadCount> >; TCountMap = std::vector<std::vector<JunctionCount> >; TSpanMap = std::vector<std::vector<SpanningCount> >]' at src/coverage.h:265:30:
/usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '<anonymous>' may be used uninitialized [-Wmaybe-uninitialized]
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector<LibraryInfo>; TSVs = std::vector<StructuralVariantRecord>; TCoverageCount = std::vector<std::vector<ReadCount> >; TCountMap = std::vector<std::vector<JunctionCount> >; TSpanMap = std::vector<std::vector<SpanningCount> >]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector<torali::ReadCount>::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]' declared here
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
src/coverage.h:265:43: note: '<anonymous>' declared here
265 | covCount[file_c].resize(svs.size(), TCovPair());
| ^~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]',
inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:177:26:
/usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '<anonymous>' may be used uninitialized [-Wmaybe-uninitialized]
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector<torali::ReadCount>::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]' declared here
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from src/delly.cpp:22:
src/tegua.h:177:39: note: '<anonymous>' declared here
177 | rcMap[file_c].resize(svs.size(), ReadCount());
| ^~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = torali::SortCNVs<torali::CNV>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'int32_t torali::bamCount(const TConfig&, const LibraryInfo&, const std::vector<GcBias>&, const std::pair<unsigned int, unsigned int>&) [with TConfig = CountDNAConfig]' at src/coral.h:433:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<torali::CNV*, vector<torali::CNV> >; _Compare = torali::SortCNVs<torali::CNV>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'int32_t torali::bamCount(const TConfig&, const LibraryInfo&, const std::vector<GcBias>&, const std::pair<unsigned int, unsigned int>&) [with TConfig = CountDNAConfig]' at src/coral.h:433:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]',
inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:337:26:
/usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '<anonymous>' may be used uninitialized [-Wmaybe-uninitialized]
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In function 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector<torali::ReadCount>::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator<torali::ReadCount>]' declared here
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from src/delly.cpp:24:
src/asmode.h:337:39: note: '<anonymous>' declared here
337 | rcMap[file_c].resize(svs.size(), ReadCount());
| ^~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
chrpath -d src/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# avoiding redundant compile of delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/delly/usr/bin/delly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/delly/usr/bin/delly was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.5-1_armhf.deb'.
dpkg-deb: building package 'delly' in '../delly_1.1.5-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../delly_1.1.5-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../delly_1.1.5-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-02T21:22:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
delly_1.1.5-1_armhf.changes:
----------------------------
Format: 1.8
Date: Fri, 30 Sep 2022 13:17:17 +0200
Source: delly
Binary: delly delly-dbgsym
Architecture: armhf
Version: 1.1.5-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
delly - Structural variant discovery by read analysis
Changes:
delly (1.1.5-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
Checksums-Sha1:
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9246131fe59e11156739d94e618300be0cf8372b 6492 delly_1.1.5-1_armhf.buildinfo
ebacd5604152b09ab0eb7eed7bbcf054b05501f2 249824 delly_1.1.5-1_armhf.deb
Checksums-Sha256:
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Files:
c6f83cc33f5709c99b694f570ff00ef4 5189684 debug optional delly-dbgsym_1.1.5-1_armhf.deb
3fab4c5cb265793ec9af44b8227c9bd4 6492 science optional delly_1.1.5-1_armhf.buildinfo
5864ea1cf573d3c8c2f06c43c85fa0a7 249824 science optional delly_1.1.5-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
delly-dbgsym_1.1.5-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 5189684 bytes: control archive=532 bytes.
363 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: delly-dbgsym
Source: delly
Version: 1.1.5-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5266
Depends: delly (= 1.1.5-1)
Section: debug
Priority: optional
Description: debug symbols for delly
Build-Ids: 93e75578e5f3631f26aa21ea44e0469b625e11d9
drwxr-xr-x root/root 0 2022-09-30 11:17 ./
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/lib/debug/.build-id/93/
-rw-r--r-- root/root 5381764 2022-09-30 11:17 ./usr/lib/debug/.build-id/93/e75578e5f3631f26aa21ea44e0469b625e11d9.debug
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-30 11:17 ./usr/share/doc/delly-dbgsym -> delly
delly_1.1.5-1_armhf.deb
-----------------------
new Debian package, version 2.0.
size 249824 bytes: control archive=944 bytes.
939 bytes, 16 lines control
312 bytes, 5 lines md5sums
Package: delly
Version: 1.1.5-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 786
Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libhts3 (>= 1.10), libstdc++6 (>= 11)
Section: science
Priority: optional
Homepage: https://github.com/dellytools/delly
Description: Structural variant discovery by read analysis
Delly performs Structural variant discovery by integrated paired-end and
split-read analysis. It discovers, genotypes and visualizes deletions,
tandem duplications, inversions and translocations at single-nucleotide
resolution in short-read massively parallel sequencing data. It uses
paired-ends, split-reads and read-depth to sensitively and accurately
delineate genomic rearrangements throughout the genome.
drwxr-xr-x root/root 0 2022-09-30 11:17 ./
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/bin/
-rwxr-xr-x root/root 787984 2022-09-30 11:17 ./usr/bin/delly
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/doc/delly/
-rw-r--r-- root/root 1328 2022-09-30 11:17 ./usr/share/doc/delly/changelog.Debian.gz
-rw-r--r-- root/root 2645 2022-09-30 11:17 ./usr/share/doc/delly/copyright
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/man/
drwxr-xr-x root/root 0 2022-09-30 11:17 ./usr/share/man/man1/
-rw-r--r-- root/root 291 2022-09-30 11:17 ./usr/share/man/man1/delly.1.gz
-rw-r--r-- root/root 336 2022-09-30 11:17 ./usr/share/man/man1/dpe.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 32660
Build-Time: 265
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 194
Job: delly_1.1.5-1
Machine Architecture: armhf
Package: delly
Package-Time: 480
Source-Version: 1.1.5-1
Space: 32660
Status: successful
Version: 1.1.5-1
--------------------------------------------------------------------------------
Finished at 2022-10-02T21:22:30Z
Build needed 00:08:00, 32660k disk space