delly →
1.0.3-1 →
armhf → 2022-05-07 05:44:32
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| delly 1.0.3-1 (armhf) Sat, 07 May 2022 05:32:45 +0000 |
+==============================================================================+
Package: delly
Version: 1.0.3-1
Source Version: 1.0.3-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-dd792bd1-02aa-49f3-915a-697492b109f1' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/delly-DNN8mj/resolver-RJpwIB' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.9 MB in 13s (2046 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'delly' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/delly.git
Please use:
git clone https://salsa.debian.org/med-team/delly.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 108 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main delly 1.0.3-1 (dsc) [2088 B]
Get:2 http://172.17.4.1/private bookworm-staging/main delly 1.0.3-1 (tar) [102 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main delly 1.0.3-1 (diff) [4292 B]
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I: NOTICE: Log filtering will replace 'build/delly-DNN8mj/delly-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/delly-DNN8mj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [438 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [519 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu71 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-graph1.74-dev libboost-graph-parallel1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev
libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev
libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config icu-doc liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu71 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
zlib1g-dev
0 upgraded, 69 newly installed, 0 to remove and 34 not upgraded.
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Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
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Get:17 http://172.17.4.1/private bookworm-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
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Get:51 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-14+b2 [334 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-14+b2 [374 kB]
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Get:59 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.33-7+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.7+rpi1 g++-11_11.2.0-20+rpi1 gcc-11_11.2.0-20+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-20+rpi1 libstdc++6_12-20220319-1+rpi1 linux-libc-dev_5.16.18-1+rpi1
Package versions: adduser_3.121 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 chrpath_0.16-2 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-20+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.7+rpi1 dpkg-dev_1.21.7+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-4 findutils_4.9.0-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-20+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-20+rpi1 gcc-11-base_11.2.0-20+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-2 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.4.5 libarchive-zip-perl_1.68-1 libasan6_11.2.0-20+rpi1 libassuan0_2.5.5-1 libatomic1_12-20220319-1+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblkid1_2.38-4 libboost-date-time-dev_1.74.0.3+b4 libboost-date-time1.74-dev_1.74.0-14+b2 libboost-date-time1.74.0_1.74.0-14+b2 libboost-filesystem-dev_1.74.0.3+b4 libboost-filesystem1.74-dev_1.74.0-14+b2 libboost-filesystem1.74.0_1.74.0-14+b2 libboost-iostreams-dev_1.74.0.3+b4 libboost-iostreams1.74-dev_1.74.0-14+b2 libboost-iostreams1.74.0_1.74.0-14+b2 libboost-program-options-dev_1.74.0.3+b4 libboost-program-options1.74-dev_1.74.0-14+b2 libboost-program-options1.74.0_1.74.0-14+b2 libboost-regex1.74-dev_1.74.0-14+b2 libboost-regex1.74.0_1.74.0-14+b2 libboost-serialization1.74-dev_1.74.0-14+b2 libboost-serialization1.74.0_1.74.0-14+b2 libboost-system-dev_1.74.0.3+b4 libboost-system1.74-dev_1.74.0-14+b2 libboost-system1.74.0_1.74.0-14+b2 libboost1.74-dev_1.74.0-14+b2 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcc1-0_12-20220319-1+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libcurl3-gnutls_7.83.0-1 libcurl4-gnutls-dev_7.83.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.262 libdebhelper-perl_13.7.1 libdeflate-dev_1.10-2 libdeflate0_1.10-2 libdpkg-perl_1.21.7+rpi1 libelf1_0.186-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-20+rpi1 libgcc-s1_12-20220319-1+rpi1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.4-2 libgomp1_12-20220319-1+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.19.2-2+b2 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.2.1-1 libicu-dev_71.1-2 libicu71_71.1-2 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.19.2-2+b2 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b2 libkrb5support0_1.19.2-2+b2 libksba8_1.6.0-2 libldap-2.5-0_2.5.11+dfsg-1+rpi1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-4 libpcre3_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-4 libpipeline1_1.5.6-1 libpsl5_0.21.0-1.2 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-4 libsasl2-modules-db_2.1.28+dfsg-4 libseccomp2_2.5.3-2+rpi1+b1 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage2_3.3-1+b1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-20+rpi1 libstdc++6_12-20220319-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-3 libubsan1_12-20220319-1+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.38-4 libxml2_2.9.13+dfsg-1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.16.18-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 mount_2.38-4 ncurses-base_6.3-2 ncurses-bin_6.3-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 util-linux_2.37.3-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: delly
Binary: delly
Architecture: any
Version: 1.0.3-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://github.com/dellytools/delly
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/delly
Vcs-Git: https://salsa.debian.org/med-team/delly.git
Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper
Package-List:
delly deb science optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Uk6utsx6/trustedkeys.kbx': General error
gpgv: Signature made Mon May 2 11:47:08 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./delly_1.0.3-1.dsc
dpkg-source: info: extracting delly in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking delly_1.0.3.orig.tar.xz
dpkg-source: info: unpacking delly_1.0.3-1.debian.tar.xz
Check disk space
----------------
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User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=41a23d85cb544dd4a872479b57d3b7e9
JOURNAL_STREAM=8:23099
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-dd792bd1-02aa-49f3-915a-697492b109f1
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c16369
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package delly
dpkg-buildpackage: info: source version 1.0.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 distclean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi
rm -f .htslib src/delly .htslib.o src/delly.o .htslib
rm -f src/delly
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf src/dpe src/delly bin/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- BUILT_PROGRAMS="src/delly src/dpe" PARALLEL=1
make -j4 "INSTALL=install --strip-program=true" "BUILT_PROGRAMS=src/delly src/dpe" PARALLEL=1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
if [ -r src/htslib/Makefile ]; then cd src/htslib && autoheader && autoconf && ./configure --disable-s3 --disable-gcs --disable-libcurl --disable-plugins && make && make lib-static && cd ../../ && touch .htslib; fi
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /<<PKGBUILDDIR>>/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/<<PKGBUILDDIR>>/src/htslib/ -L/<<PKGBUILDDIR>>/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/<<PKGBUILDDIR>>/src/htslib/
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /<<PKGBUILDDIR>>/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/dpe.cpp -o src/dpe -Wl,-z,relro -Wl,-z,now -L/<<PKGBUILDDIR>>/src/htslib/ -L/<<PKGBUILDDIR>>/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/<<PKGBUILDDIR>>/src/htslib/
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
from /usr/include/boost/property_map/vector_property_map.hpp:14,
from /usr/include/boost/property_map/property_map.hpp:602,
from /usr/include/boost/graph/adjacency_list.hpp:27,
from src/dpe.cpp:5:
/usr/include/boost/progress.hpp:23:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp> instead.’
23 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.’
21 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
from /usr/include/boost/property_map/vector_property_map.hpp:14,
from /usr/include/boost/property_map/property_map.hpp:602,
from /usr/include/boost/graph/adjacency_list.hpp:27,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/boost/progress.hpp:23:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp> instead.’
23 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.’
21 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from src/coral.h:18,
from src/delly.cpp:22:
src/scan.h: In instantiation of ‘void torali::scan(const TConfig&, const torali::LibraryInfo&, std::vector<std::vector<torali::ScanWindow> >&) [with TConfig = torali::CountDNAConfig]’:
src/coral.h:707:11: required from here
src/scan.h:99:30: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
99 | if ((it->lower() >= 0) && (it->upper() < hdr->target_len[refIndex])) {
| ~~~~~~~~~~~~~^~~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:64,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from src/delly.cpp:3:
/usr/include/c++/11/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type = float; typename std::decay<_Tp2>::type = float; typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type = float; typename std::decay<_Tp>::type = float]’:
src/classify.h:155:34: required from ‘int torali::classifyRun(const TClassifyConfig&) [with TClassifyConfig = torali::ClassifyConfig]’
src/classify.h:484:21: required from here
/usr/include/c++/11/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]’,
inlined from ‘typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<char>; T = char; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<char>; T = char]’ at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from ‘void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:548:29,
inlined from ‘boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:156:19:
cc1plus: warning: ‘void* __builtin_memset(void*, int, unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const torali::CNV&}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<torali::CNV>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_vector.h: In function ‘void torali::parseVcfCNV(const TConfig&, bam_hdr_t*, std::vector<torali::CNV>&) [with TConfig = torali::CountDNAConfig]’:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {torali::BpCNV}; _Tp = torali::BpCNV; _Alloc = std::allocator<torali::BpCNV>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<torali::BpCNV>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {torali::CNV}; _Tp = torali::CNV; _Alloc = std::allocator<torali::CNV>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<torali::CNV>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In function ‘void torali::mergeCNVs(const TConfig&, std::vector<torali::CNV>&, std::vector<torali::CNV>&) [with TConfig = torali::CountDNAConfig]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/functional:65,
from /usr/include/boost/container_hash/hash.hpp:20,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:20,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<torali::SortCNVs<torali::CNV> >]’:
/usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1799 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]’:
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1819 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/vector.tcc: In function ‘void torali::callCNVs(const TConfig&, const std::pair<unsigned int, unsigned int>&, const std::vector<short unsigned int>&, const std::vector<short unsigned int>&, const TGcBias&, const TCoverage&, const bam_hdr_t*, int32_t, std::vector<torali::CNV>&) [with TConfig = torali::CountDNAConfig; TGcBias = std::vector<torali::GcBias>; TCoverage = std::vector<short unsigned int>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::BpCNV*, std::vector<torali::BpCNV> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = bool; _Args = {}; _Tp = bool]’,
inlined from ‘typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<bool>; T = bool; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<bool>; T = bool]’ at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from ‘void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = bool; unsigned int NumDims = 2; Allocator = std::allocator<bool>]’ at /usr/include/boost/multi_array.hpp:548:29,
inlined from ‘boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = bool; unsigned int NumDims = 2; Allocator = std::allocator<bool>]’ at /usr/include/boost/multi_array.hpp:156:19,
inlined from ‘void torali::consensus(const TConfig&, const TAlign&, std::string&, std::string&) [with TConfig = torali::TeguaConfig; TAlign = boost::multi_array<char, 2>]’ at src/msa.h:166:11:
cc1plus: warning: ‘void* __builtin_memset(void*, int, unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]’,
inlined from ‘typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<char>; T = char; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<char>; T = char]’ at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from ‘void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:548:29,
inlined from ‘boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:156:19,
inlined from ‘void torali::convertAlignment(const string&, TAlign&, EdlibAlignMode, EdlibAlignResult&) [with TAlign = boost::multi_array<char, 2>]’ at src/assemble.h:31:12,
inlined from ‘int torali::msaEdlib(const TConfig&, TSplitReadSet&, std::string&) [with TConfig = torali::TeguaConfig; TSplitReadSet = std::vector<std::__cxx11::basic_string<char> >]’ at src/assemble.h:203:23:
cc1plus: warning: ‘void* __builtin_memset(void*, int, unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = bool; _Args = {}; _Tp = bool]’,
inlined from ‘typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<bool>; T = bool; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<bool>; T = bool]’ at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from ‘void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = bool; unsigned int NumDims = 2; Allocator = std::allocator<bool>]’ at /usr/include/boost/multi_array.hpp:548:29,
inlined from ‘boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = bool; unsigned int NumDims = 2; Allocator = std::allocator<bool>]’ at /usr/include/boost/multi_array.hpp:156:19,
inlined from ‘void torali::consensus(const TConfig&, const TAlign&, std::string&, std::string&) [with TConfig = torali::Config; TAlign = boost::multi_array<char, 2>]’ at src/msa.h:166:11:
cc1plus: warning: ‘void* __builtin_memset(void*, int, unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
In file included from /usr/include/c++/11/bits/stl_algo.h:61,
from /usr/include/c++/11/functional:65,
from /usr/include/boost/container_hash/hash.hpp:20,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:20,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >; _Distance = int; _Tp = torali::CNV; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]’:
/usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/11/functional:65,
from /usr/include/boost/container_hash/hash.hpp:20,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:20,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<torali::SortCNVs<torali::CNV> >]’:
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1925 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]’,
inlined from ‘typename std::enable_if<boost::detail::alloc_has_construct<void, A, T, Args ...>::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator<char>; T = char; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16,
inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator<char>; T = char]’ at /usr/include/boost/core/alloc_construct.hpp:122:35,
inlined from ‘void boost::multi_array<T, NumDims, Allocator>::allocate_space() [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:548:29,
inlined from ‘boost::multi_array<T, NumDims, Allocator>::multi_array(const Allocator&) [with T = char; unsigned int NumDims = 2; Allocator = std::allocator<char>]’ at /usr/include/boost/multi_array.hpp:156:19,
inlined from ‘void torali::_generateProbes(const TConfig&, bam_hdr_t*, TSVs&, TBreakProbes&, TBreakProbes&, TGenomicBpRegion&, std::vector<bool>&) [with TConfig = torali::Config; TSVs = std::vector<torali::StructuralVariantRecord>; TBreakProbes = std::vector<std::vector<std::__cxx11::basic_string<char> > >; TGenomicBpRegion = std::vector<std::vector<torali::BpRegion> >]’ at src/coverage.h:186:11:
cc1plus: warning: ‘void* __builtin_memset(void*, int, unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:16,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/vector.tcc: In function ‘void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = torali::Config; TStructuralVariantRecord = torali::StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<torali::JunctionCount> >; TReadCountMap = std::vector<std::vector<torali::ReadCount> >; TCountMap = std::vector<std::vector<torali::SpanningCount> >]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function ‘void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = torali::TeguaConfig; TStructuralVariantRecord = torali::StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<torali::JunctionCount> >; TReadCountMap = std::vector<std::vector<torali::ReadCount> >; TCountMap = std::vector<std::vector<torali::SpanningCount> >]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/functional:65,
from /usr/include/boost/container_hash/hash.hpp:20,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:20,
from src/delly.h:8,
from src/delly.cpp:17:
/usr/include/c++/11/bits/stl_algo.h: In function ‘int32_t torali::bamCount(const TConfig&, const torali::LibraryInfo&, const std::vector<torali::GcBias>&, const std::pair<unsigned int, unsigned int>&) [with TConfig = torali::CountDNAConfig]’:
/usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1954 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1955 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1956 | __comp);
| ~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<torali::CNV*, std::vector<torali::CNV> >’ changed in GCC 7.1
1871 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
chrpath -d src/dpe src/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# avoiding redundant compile of delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/delly/usr/bin/delly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/delly/usr/bin/dpe contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/delly/usr/bin/delly debian/delly/usr/bin/dpe were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.0.3-1_armhf.deb'.
dpkg-deb: building package 'delly' in '../delly_1.0.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../delly_1.0.3-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../delly_1.0.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-05-07T05:44:24Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
delly_1.0.3-1_armhf.changes:
----------------------------
Format: 1.8
Date: Mon, 02 May 2022 12:17:29 +0200
Source: delly
Binary: delly delly-dbgsym
Architecture: armhf
Version: 1.0.3-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
delly - Structural variant discovery by read analysis
Changes:
delly (1.0.3-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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Files:
6992745c0a1b1c003dd3731a84b7d2e0 5042264 debug optional delly-dbgsym_1.0.3-1_armhf.deb
345ce489be4a5fce7f37fcd77bd3fbb8 6593 science optional delly_1.0.3-1_armhf.buildinfo
1e9eaa904370674706f238006e6999c3 261436 science optional delly_1.0.3-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: delly
Binary: delly delly-dbgsym
Architecture: armhf
Version: 1.0.3-1
Checksums-Md5:
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e6df68ca48e7cf40fc31fbfea97853d74348e92859ac76223f96254b145b38ea 261436 delly_1.0.3-1_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 07 May 2022 05:44:23 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-6),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.5.52),
bash (= 5.1-6),
binutils (= 2.38-3+rpi1),
binutils-arm-linux-gnueabihf (= 2.38-3+rpi1),
binutils-common (= 2.38-3+rpi1),
bsdextrautils (= 2.38-4),
bsdutils (= 1:2.38-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-5),
chrpath (= 0.16-2),
coreutils (= 8.32-4.1),
cpp (= 4:11.2.0-2+rpi1),
cpp-11 (= 11.2.0-20+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-8),
debconf (= 1.5.79),
debhelper (= 13.7.1),
debianutils (= 5.7-0.1),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.21.7+rpi1),
dpkg-dev (= 1.21.7+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-4),
findutils (= 4.9.0-2),
g++ (= 4:11.2.0-2+rpi1),
g++-11 (= 11.2.0-20+rpi1),
gcc (= 4:11.2.0-2+rpi1),
gcc-11 (= 11.2.0-20+rpi1),
gcc-11-base (= 11.2.0-20+rpi1),
gcc-12-base (= 12-20220319-1+rpi1),
gettext (= 0.21-6),
gettext-base (= 0.21-6),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hostname (= 3.23),
icu-devtools (= 71.1-2),
init-system-helpers (= 1.62),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 11.2.0-20+rpi1),
libatomic1 (= 12-20220319-1+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1),
libaudit1 (= 1:3.0.7-1+b1),
libbinutils (= 2.38-3+rpi1),
libblkid1 (= 2.38-4),
libboost-date-time-dev (= 1.74.0.3+b4),
libboost-date-time1.74-dev (= 1.74.0-14+b2),
libboost-date-time1.74.0 (= 1.74.0-14+b2),
libboost-filesystem-dev (= 1.74.0.3+b4),
libboost-filesystem1.74-dev (= 1.74.0-14+b2),
libboost-filesystem1.74.0 (= 1.74.0-14+b2),
libboost-iostreams-dev (= 1.74.0.3+b4),
libboost-iostreams1.74-dev (= 1.74.0-14+b2),
libboost-iostreams1.74.0 (= 1.74.0-14+b2),
libboost-program-options-dev (= 1.74.0.3+b4),
libboost-program-options1.74-dev (= 1.74.0-14+b2),
libboost-program-options1.74.0 (= 1.74.0-14+b2),
libboost-regex1.74-dev (= 1.74.0-14+b2),
libboost-regex1.74.0 (= 1.74.0-14+b2),
libboost-serialization1.74-dev (= 1.74.0-14+b2),
libboost-serialization1.74.0 (= 1.74.0-14+b2),
libboost-system-dev (= 1.74.0.3+b4),
libboost-system1.74-dev (= 1.74.0-14+b2),
libboost-system1.74.0 (= 1.74.0-14+b2),
libboost1.74-dev (= 1.74.0-14+b2),
libbrotli1 (= 1.0.9-2+b2),
libbz2-1.0 (= 1.0.8-5),
libbz2-dev (= 1.0.8-5),
libc-bin (= 2.33-7+rpi1),
libc-dev-bin (= 2.33-7+rpi1),
libc6 (= 2.33-7+rpi1),
libc6-dev (= 2.33-7+rpi1),
libcap-ng0 (= 0.7.9-2.2+b2),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12-20220319-1+rpi1),
libcom-err2 (= 1.46.5-2),
libcrypt-dev (= 1:4.4.27-1.1),
libcrypt1 (= 1:4.4.27-1.1),
libctf-nobfd0 (= 2.38-3+rpi1),
libctf0 (= 2.38-3+rpi1),
libcurl3-gnutls (= 7.83.0-1),
libcurl4-gnutls-dev (= 7.83.0-1),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.262),
libdebhelper-perl (= 13.7.1),
libdeflate-dev (= 1.10-2),
libdeflate0 (= 1.10-2),
libdpkg-perl (= 1.21.7+rpi1),
libelf1 (= 0.186-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-11-dev (= 11.2.0-20+rpi1),
libgcc-s1 (= 12-20220319-1+rpi1),
libgcrypt20 (= 1.10.1-2),
libgdbm-compat4 (= 1.23-1),
libgdbm6 (= 1.23-1),
libgmp10 (= 2:6.2.1+dfsg-3),
libgnutls30 (= 3.7.4-2),
libgomp1 (= 12-20220319-1+rpi1),
libgpg-error0 (= 1.43-3),
libgssapi-krb5-2 (= 1.19.2-2+b2),
libhogweed6 (= 3.7.3-1),
libhts-dev (= 1.13+ds-2),
libhts3 (= 1.13+ds-2),
libhtscodecs2 (= 1.2.1-1),
libicu-dev (= 71.1-2),
libicu71 (= 71.1-2),
libidn2-0 (= 2.3.2-2),
libisl23 (= 0.24-2),
libk5crypto3 (= 1.19.2-2+b2),
libkeyutils1 (= 1.6.1-3+rpi1),
libkrb5-3 (= 1.19.2-2+b2),
libkrb5support0 (= 1.19.2-2+b2),
libldap-2.5-0 (= 2.5.11+dfsg-1+rpi1),
liblz4-1 (= 1.9.3-2),
liblzma-dev (= 5.2.5-2.1),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmount1 (= 2.38-4),
libmpc3 (= 1.2.1-2),
libmpfr6 (= 4.1.0-3),
libnettle8 (= 3.7.3-1),
libnghttp2-14 (= 1.43.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.4.0-11),
libpam-modules-bin (= 1.4.0-11),
libpam-runtime (= 1.4.0-11),
libpam0g (= 1.4.0-11),
libpcre2-8-0 (= 10.39-4),
libpcre3 (= 2:8.39-14),
libperl5.34 (= 5.34.0-4),
libpipeline1 (= 1.5.6-1),
libpsl5 (= 0.21.0-1.2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-4),
libsasl2-modules-db (= 2.1.28+dfsg-4),
libseccomp2 (= 2.5.3-2+rpi1+b1),
libselinux1 (= 3.3-1+b1),
libsigsegv2 (= 2.14-1),
libsmartcols1 (= 2.38-4),
libssh2-1 (= 1.10.0-3),
libssl1.1 (= 1.1.1n-1),
libstdc++-11-dev (= 11.2.0-20+rpi1),
libstdc++6 (= 12-20220319-1+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 250.4-1+rpi1),
libtasn1-6 (= 4.18.0-4),
libtinfo6 (= 6.3-2),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.7-3),
libubsan1 (= 12-20220319-1+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 250.4-1+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.38-4),
libxml2 (= 2.9.13+dfsg-1+b1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.16.18-1+rpi1),
login (= 1:4.11.1+dfsg1-2),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.10.2-1),
mawk (= 1.3.4.20200120-3),
ncurses-base (= 6.3-2),
ncurses-bin (= 6.3-2),
patch (= 2.7.6-7),
perl (= 5.34.0-4),
perl-base (= 5.34.0-4),
perl-modules-5.34 (= 5.34.0-4),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.03-1),
tar (= 1.34+dfsg-1),
util-linux (= 2.37.3-1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4),
zlib1g-dev (= 1:1.2.11.dfsg-4)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1651486649"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
delly-dbgsym_1.0.3-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 5042264 bytes: control archive=640 bytes.
404 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: delly-dbgsym
Source: delly
Version: 1.0.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5172
Depends: delly (= 1.0.3-1)
Section: debug
Priority: optional
Description: debug symbols for delly
Build-Ids: acbbdd7ba7bfdcd9374ad1888e19814400a40344 c8c2b59d78c0015fe4838a5a3962a237505eb7e9
drwxr-xr-x root/root 0 2022-05-02 10:17 ./
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 647692 2022-05-02 10:17 ./usr/lib/debug/.build-id/ac/bbdd7ba7bfdcd9374ad1888e19814400a40344.debug
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/.build-id/c8/
-rw-r--r-- root/root 4517076 2022-05-02 10:17 ./usr/lib/debug/.build-id/c8/c2b59d78c0015fe4838a5a3962a237505eb7e9.debug
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 115788 2022-05-02 10:17 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/delly.debug
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-05-02 10:17 ./usr/share/doc/delly-dbgsym -> delly
delly_1.0.3-1_armhf.deb
-----------------------
new Debian package, version 2.0.
size 261436 bytes: control archive=972 bytes.
939 bytes, 16 lines control
358 bytes, 6 lines md5sums
Package: delly
Version: 1.0.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 836
Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libhts3 (>= 1.10), libstdc++6 (>= 11)
Section: science
Priority: optional
Homepage: https://github.com/dellytools/delly
Description: Structural variant discovery by read analysis
Delly performs Structural variant discovery by integrated paired-end and
split-read analysis. It discovers, genotypes and visualizes deletions,
tandem duplications, inversions and translocations at single-nucleotide
resolution in short-read massively parallel sequencing data. It uses
paired-ends, split-reads and read-depth to sensitively and accurately
delineate genomic rearrangements throughout the genome.
drwxr-xr-x root/root 0 2022-05-02 10:17 ./
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/bin/
-rwxr-xr-x root/root 726676 2022-05-02 10:17 ./usr/bin/delly
-rwxr-xr-x root/root 112268 2022-05-02 10:17 ./usr/bin/dpe
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/doc/delly/
-rw-r--r-- root/root 1180 2022-05-02 10:17 ./usr/share/doc/delly/changelog.Debian.gz
-rw-r--r-- root/root 2645 2022-05-02 10:17 ./usr/share/doc/delly/copyright
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/man/
drwxr-xr-x root/root 0 2022-05-02 10:17 ./usr/share/man/man1/
-rw-r--r-- root/root 291 2022-05-02 10:17 ./usr/share/man/man1/delly.1.gz
-rw-r--r-- root/root 336 2022-05-02 10:17 ./usr/share/man/man1/dpe.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 30476
Build-Time: 262
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 408
Job: delly_1.0.3-1
Machine Architecture: armhf
Package: delly
Package-Time: 699
Source-Version: 1.0.3-1
Space: 30476
Status: successful
Version: 1.0.3-1
--------------------------------------------------------------------------------
Finished at 2022-05-07T05:44:24Z
Build needed 00:11:39, 30476k disk space