delly →
0.8.1-3 →
armhf → 2020-01-10 23:59:42
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| delly 0.8.1-3 (armhf) Fri, 10 Jan 2020 23:36:36 +0000 |
+==============================================================================+
Package: delly
Version: 0.8.1-3
Source Version: 0.8.1-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-ba89f9ca-f5eb-4b83-8aa9-0c6bc15ff39f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 30s (822 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'delly' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/delly.git
Please use:
git clone https://salsa.debian.org/med-team/delly.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 78.5 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main delly 0.8.1-3 (dsc) [2074 B]
Get:2 http://172.17.0.1/private bullseye-staging/main delly 0.8.1-3 (tar) [72.6 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main delly 0.8.1-3 (diff) [3852 B]
Fetched 78.5 kB in 0s (251 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/delly-CYktsi/delly-0.8.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/delly-CYktsi' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1ZvU3r/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1ZvU3r/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2874 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12242 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath
Filtered Build-Depends: debhelper-compat (= 12), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath
dpkg-deb: building package 'sbuild-build-depends-delly-dummy' in '/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive/sbuild-build-depends-delly-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-delly-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Sources [558 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ Packages [636 B]
Fetched 2527 B in 1s (3378 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install delly build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.67-dev libboost-date-time1.67.0
libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev
libboost-iostreams1.67.0 libboost-program-options-dev
libboost-program-options1.67-dev libboost-program-options1.67.0
libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev
libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev
libboost-system1.67.0 libboost1.67-dev libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu-dev libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-locale1.67-dev libboost-log1.67-dev
libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev
libboost-numpy1.67-dev libboost-python1.67-dev libboost-random1.67-dev
libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.67-dev libboost-date-time1.67.0
libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev
libboost-iostreams1.67.0 libboost-program-options-dev
libboost-program-options1.67-dev libboost-program-options1.67.0
libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev
libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev
libboost-system1.67.0 libboost1.67-dev libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu-dev libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-delly-dummy sensible-utils zlib1g-dev
0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
Need to get 48.9 MB of archives.
After this operation, 292 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1ZvU3r/apt_archive ./ sbuild-build-depends-delly-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-1 [29.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.67.0 armhf 1.67.0-17 [237 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.67.0 armhf 1.67.0-17 [301 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.67-dev armhf 1.67.0-17 [369 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.67-dev armhf 1.67.0-17 [249 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time-dev armhf 1.67.0.2+b9 [4248 B]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67.0 armhf 1.67.0-17 [229 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67.0 armhf 1.67.0-17 [255 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67-dev armhf 1.67.0-17 [231 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67-dev armhf 1.67.0-17 [261 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.67.0.2+b9 [4284 B]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67.0 armhf 1.67.0-17 [452 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67-dev armhf 1.67.0-17 [555 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67.0 armhf 1.67.0-17 [246 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67-dev armhf 1.67.0-17 [254 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.67.0.2+b9 [4232 B]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67.0 armhf 1.67.0-17 [333 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67-dev armhf 1.67.0-17 [378 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.67.0.2+b9 [4264 B]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.67.0.2+b9 [4384 B]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-1 [78.0 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-2 [327 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-2 [4784 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 48.9 MB in 17s (2830 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12242 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 chrpath_0.16-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libboost-date-time-dev_1.67.0.2+b9 libboost-date-time1.67-dev_1.67.0-17 libboost-date-time1.67.0_1.67.0-17 libboost-filesystem-dev_1.67.0.2+b9 libboost-filesystem1.67-dev_1.67.0-17 libboost-filesystem1.67.0_1.67.0-17 libboost-iostreams-dev_1.67.0.2+b9 libboost-iostreams1.67-dev_1.67.0-17 libboost-iostreams1.67.0_1.67.0-17 libboost-program-options-dev_1.67.0.2+b9 libboost-program-options1.67-dev_1.67.0-17 libboost-program-options1.67.0_1.67.0-17 libboost-regex1.67-dev_1.67.0-17 libboost-regex1.67.0_1.67.0-17 libboost-serialization1.67-dev_1.67.0-17 libboost-serialization1.67.0_1.67.0-17 libboost-system-dev_1.67.0.2+b9 libboost-system1.67-dev_1.67.0-17 libboost-system1.67.0_1.67.0-17 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdeflate0_1.5-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-2 libhts3_1.10.2-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-1 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-delly-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Dec 27 06:33:58 2019 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./delly_0.8.1-3.dsc
dpkg-source: info: extracting delly in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking delly_0.8.1.orig.tar.xz
dpkg-source: info: unpacking delly_0.8.1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hts1.3
dpkg-source: info: applying hardening
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ba89f9ca-f5eb-4b83-8aa9-0c6bc15ff39f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package delly
dpkg-buildpackage: info: source version 0.8.1-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 distclean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi
rm -f .htslib src/delly .htslib.o src/delly.o .htslib
rm -f src/delly
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf src/dpe src/delly bin/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- BUILT_PROGRAMS="src/delly src/dpe" PARALLEL=1
make -j4 "INSTALL=install --strip-program=true" "BUILT_PROGRAMS=src/delly src/dpe" PARALLEL=1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
if [ -r src/htslib/Makefile ]; then cd src/htslib && make && make lib-static && cd ../../ && touch .htslib; fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /<<PKGBUILDDIR>>/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/<<PKGBUILDDIR>>/src/htslib/ -L/<<PKGBUILDDIR>>/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/<<PKGBUILDDIR>>/src/htslib/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /<<PKGBUILDDIR>>/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/dpe.cpp -o src/dpe -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/<<PKGBUILDDIR>>/src/htslib/ -L/<<PKGBUILDDIR>>/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/<<PKGBUILDDIR>>/src/htslib/
src/dpe.cpp: In function 'int dpeRun(const DoublePEConfig&)':
src/dpe.cpp:137:16: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
137 | bcf_hdr_write(ofile, hdr_out);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from src/delly.h:61,
from src/delly.cpp:38:
src/modvcf.h: In function 'void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = torali::Config; TStructuralVariantRecord = torali::StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<torali::JunctionCount> >; TReadCountMap = std::vector<std::vector<torali::ReadCount> >; TCountMap = std::vector<std::vector<torali::SpanningCount> >]':
src/modvcf.h:477:16: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
477 | bcf_hdr_write(fp, hdr);
| ~~~~~~~~~~~~~^~~~~~~~~
In file included from src/delly.cpp:39:
src/filter.h: In function 'int torali::filterRun(const TFilterConfig&) [with TFilterConfig = torali::FilterConfig]':
src/filter.h:108:16: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
108 | bcf_hdr_write(ofile, hdr_out);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from src/delly.cpp:40:
src/merge.h: In function 'void torali::_outputSelectedIntervals(torali::MergeConfig&, const TGenomeIntervals&, TContigMap&, int32_t) [with TGenomeIntervals = std::vector<std::vector<torali::IntervalScore> >; TContigMap = std::map<std::__cxx11::basic_string<char>, unsigned int>]':
src/merge.h:308:16: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
308 | bcf_hdr_write(fp, hdr_out);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
src/merge.h:330:24: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)', declared with attribute warn_unused_result [-Wunused-result]
330 | bcf_hdr_set_samples(hdr[file_c], NULL, false); // Do not read the sample information
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from src/delly.cpp:40:
src/merge.h: In function 'void torali::mergeBCFs(torali::MergeConfig&, const std::vector<boost::filesystem::path>&)':
src/merge.h:592:16: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
592 | bcf_hdr_write(fp, hdr_out);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from src/delly.h:29,
from src/delly.cpp:38:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void torali::vcfOutput(const TConfig&, const std::vector<Property>&, const TJunctionCountMap&, const TReadCountMap&, const TCountMap&) [with TConfig = torali::Config; TStructuralVariantRecord = torali::StructuralVariantRecord; TJunctionCountMap = std::vector<std::vector<torali::JunctionCount> >; TReadCountMap = std::vector<std::vector<torali::ReadCount> >; TCountMap = std::vector<std::vector<torali::SpanningCount> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
chrpath -d src/dpe src/delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# avoiding redundant compile of delly
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/delly/usr/bin/dpe contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/delly/usr/bin/delly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/delly/usr/bin/dpe debian/delly/usr/bin/delly were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_0.8.1-3_armhf.deb'.
dpkg-deb: building package 'delly' in '../delly_0.8.1-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../delly_0.8.1-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-01-10T23:59:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
delly_0.8.1-3_armhf.changes:
----------------------------
Format: 1.8
Date: Wed, 25 Dec 2019 11:22:47 +0100
Source: delly
Binary: delly delly-dbgsym
Architecture: armhf
Version: 0.8.1-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
delly - Structural variant discovery by read analysis
Changes:
delly (0.8.1-3) unstable; urgency=medium
.
* Team upload.
* debhelper-compat 12
* Standards-Version: 4.4.1
* debian/rules: build with openmp
* debian/upstream/metadata: added DOI
* debian/patches/hardening: Compile using CPPFLAGS
* debian/patches/hts1.3: small patch for libhts3 compat
Checksums-Sha1:
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e8f80fa03ff69f4df673bb0912df63f767dd62cb 6301 delly_0.8.1-3_armhf.buildinfo
b586dc7ddf75d943eef5eb70a3b81261542725e4 204224 delly_0.8.1-3_armhf.deb
Checksums-Sha256:
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c06d4cd16db73d4bf8ae2fe11bddd88bf47f3ad33f642a4ce9ddb57fdfda7f2a 6301 delly_0.8.1-3_armhf.buildinfo
91e4d0f15af28a9f736a4ce1a0360dd9477baa216b5d4dddfa07e64fd498b017 204224 delly_0.8.1-3_armhf.deb
Files:
0c38d23f460d3b29beb33e089307fe14 3628696 debug optional delly-dbgsym_0.8.1-3_armhf.deb
7ef0cf6d165bf44cc45c50b8a45dbb72 6301 science optional delly_0.8.1-3_armhf.buildinfo
e2afa82f00224239e7f61aced4250ae1 204224 science optional delly_0.8.1-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
delly-dbgsym_0.8.1-3_armhf.deb
------------------------------
new Debian package, version 2.0.
size 3628696 bytes: control archive=640 bytes.
404 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: delly-dbgsym
Source: delly
Version: 0.8.1-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3817
Depends: delly (= 0.8.1-3)
Section: debug
Priority: optional
Description: debug symbols for delly
Build-Ids: 17ebdff9efeebdd15cea0ca6de5489a02e773f77 f8d23ada498b47278b9ffef5919e32f77fc7288f
drwxr-xr-x root/root 0 2019-12-25 10:22 ./
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/lib/debug/.build-id/17/
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delly_0.8.1-3_armhf.deb
-----------------------
new Debian package, version 2.0.
size 204224 bytes: control archive=980 bytes.
928 bytes, 16 lines control
358 bytes, 6 lines md5sums
Package: delly
Version: 0.8.1-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 734
Depends: libboost-date-time1.67.0, libboost-filesystem1.67.0, libboost-iostreams1.67.0, libboost-program-options1.67.0, libc6 (>= 2.29), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libhts3 (>= 1.10), libstdc++6 (>= 9)
Section: science
Priority: optional
Homepage: https://github.com/dellytools/delly
Description: Structural variant discovery by read analysis
Delly performs Structural variant discovery by integrated paired-end and
split-read analysis. It discovers, genotypes and visualizes deletions,
tandem duplications, inversions and translocations at single-nucleotide
resolution in short-read massively parallel sequencing data. It uses
paired-ends, split-reads and read-depth to sensitively and accurately
delineate genomic rearrangements throughout the genome.
drwxr-xr-x root/root 0 2019-12-25 10:22 ./
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/bin/
-rwxr-xr-x root/root 554636 2019-12-25 10:22 ./usr/bin/delly
-rwxr-xr-x root/root 181900 2019-12-25 10:22 ./usr/bin/dpe
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/share/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/share/doc/delly/
-rw-r--r-- root/root 668 2019-12-25 10:22 ./usr/share/doc/delly/changelog.Debian.gz
-rw-r--r-- root/root 1149 2019-12-25 10:22 ./usr/share/doc/delly/copyright
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/share/man/
drwxr-xr-x root/root 0 2019-12-25 10:22 ./usr/share/man/man1/
-rw-r--r-- root/root 291 2019-12-25 10:22 ./usr/share/man/man1/delly.1.gz
-rw-r--r-- root/root 336 2019-12-25 10:22 ./usr/share/man/man1/dpe.1.gz
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| Summary |
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Build Architecture: armhf
Build-Space: 23660
Build-Time: 489
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 829
Job: delly_0.8.1-3
Machine Architecture: armhf
Package: delly
Package-Time: 1377
Source-Version: 0.8.1-3
Space: 23660
Status: successful
Version: 0.8.1-3
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Finished at 2020-01-10T23:59:33Z
Build needed 00:22:57, 23660k disc space