deepnano →
0.0+git20170813.e8a621e-3.1+b8 →
armhf → 2020-04-26 05:18:37
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| deepnano 0.0+git20170813.e8a621e-3.1+b8 (armhf) Sun, 26 Apr 2020 05:02:43 +0000 |
+==============================================================================+
Package: deepnano
Version: 0.0+git20170813.e8a621e-3.1+b8
Source Version: 0.0+git20170813.e8a621e-3.1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d7d95320-e743-473c-84fb-fcc37e54a87d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 25s (977 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'deepnano' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/deepnano.git
Please use:
git clone https://salsa.debian.org/med-team/deepnano.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 100 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (dsc) [2269 B]
Get:2 http://172.17.0.1/private bullseye-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (tar) [100.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (diff) [11.6 kB]
Fetched 100 MB in 8s (12.8 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/deepnano-Ojdmv3/deepnano-0.0+git20170813.e8a621e' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/deepnano-Ojdmv3' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-wiLpd9/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-wiLpd9/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-wiLpd9/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2659 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (17.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12224 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano
Filtered Build-Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano
dpkg-deb: building package 'sbuild-build-depends-deepnano-dummy' in '/<<BUILDDIR>>/resolver-wiLpd9/apt_archive/sbuild-build-depends-deepnano-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-deepnano-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Sources [517 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ Packages [599 B]
Fetched 2449 B in 1s (3180 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install deepnano build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gcc-10-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1
libblas-dev libblas3 libbsd0 libcc1-0 libcroco3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgcc-s1 libgcc1
libgfortran5 libglib2.0-0 libgomp1 libicu63 liblapack3 liblbfgsb0
libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-dev
libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2
libssl1.1 libstdc++6 libsub-override-perl libtinfo5 libtool libubsan1
libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-decorator python3-dev python3-distutils python3-lib2to3
python3-markdown python3-minimal python3-numpy python3-packaging
python3-pkg-resources python3-pyparsing python3-scipy python3-six
python3-theano python3.7 python3.7-minimal python3.8 python3.8-dev
python3.8-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-markdown-doc gfortran python-numpy-doc python3-pytest
python3-numpy-dbg python3-setuptools python-pyparsing-doc python-scipy-doc
nvidia-cuda-toolkit python3-pycuda theano-doc python3.7-venv python3.7-doc
binfmt-support python3.8-venv python3.8-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-pygments
python3-yaml python3-pil python3-pydot python3-nose python3-parameterized
python3-pygpu libgpuarray-dev cython3 graphviz
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas-dev
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython3-dev libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib
libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib
libsigsegv2 libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0
libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-decorator python3-dev python3-distutils python3-lib2to3
python3-markdown python3-minimal python3-numpy python3-packaging
python3-pkg-resources python3-pyparsing python3-scipy python3-six
python3-theano python3.7 python3.7-minimal python3.8 python3.8-dev
python3.8-minimal sbuild-build-depends-deepnano-dummy sensible-utils
zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libstdc++6
libubsan1
8 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
Need to get 99.4 MB of archives.
After this operation, 303 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wiLpd9/apt_archive ./ sbuild-build-depends-deepnano-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10-20200411-1+rpi1 [8188 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10-20200411-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200411-1+rpi1 [197 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10-20200411-1+rpi1 [408 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10-20200411-1+rpi1 [82.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10-20200411-1+rpi1 [36.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10-20200411-1+rpi1 [31.8 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200411-1+rpi1 [36.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.10 [184 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-2 [113 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200411-1+rpi1 [231 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-2 [109 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-3 [16.7 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.3-1.2 [29.9 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf python3-markdown all 3.2.1-1 [65.1 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf python3-theano armhf 1.0.4+dfsg-2 [2015 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-10+rpi1 gcc-9_9.3.0-10+rpi1 libc6-dev_2.30-4+rpi1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200411-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-10+rpi1 dash_0.5.10.2-7 debconf_1.5.73 debhelper_12.10 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-10+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200411-1+rpi1 gcc-9_9.3.0-10+rpi1 gcc-9-base_9.3.0-10+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200411-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblas-dev_3.9.0-2 libblas3_3.9.0-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4+rpi1 libc-dev-bin_2.30-4+rpi1 libc6_2.30-4+rpi1 libc6-dev_2.30-4+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10-20200411-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.10 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 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make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.8.2-3 python3-all_3.8.2-3 python3-decorator_4.4.2-2 python3-dev_3.8.2-3 python3-distutils_3.8.2-2 python3-lib2to3_3.8.2-2 python3-markdown_3.2.1-1 python3-minimal_3.8.2-3 python3-numpy_1:1.17.4-5+b1 python3-packaging_20.3-1.2 python3-pkg-resources_44.0.0-1 python3-pyparsing_2.4.6-2 python3-scipy_1.3.3-3+b1 python3-six_1.14.0-3 python3-theano_1.0.4+dfsg-2 python3.7_3.7.7-1 python3.7-minimal_3.7.7-1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-deepnano-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Nov 3 17:06:14 2019 UTC
gpgv: using RSA key A0B1A9F3508956130E7A425CD416AD15AC6B43FE
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./deepnano_0.0+git20170813.e8a621e-3.1.dsc
dpkg-source: info: extracting deepnano in /<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e
dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e.orig.tar.xz
dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying she_bang.patch
dpkg-source: info: applying path_align_2d.patch
dpkg-source: info: applying py3-compat.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.0+git20170813.e8a621e-3.1+b8
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d7d95320-e743-473c-84fb-fcc37e54a87d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package deepnano
dpkg-buildpackage: info: source version 0.0+git20170813.e8a621e-3.1+b8
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3
dh_clean
debian/rules build-arch
dh build-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_auto_build
python3 -m markdown -f README.html README.md
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x align_2d.cc -o align_2d
align_2d.cc: In function 'Prob LoadProb(int)':
align_2d.cc:16:8: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
16 | scanf("%lf %lf %lf %lf %lf", &p.p[0], &p.p[1], &p.p[2], &p.p[3], &p.n);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align_2d.cc: In function 'Prob LoadProbC(int)':
align_2d.cc:26:8: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
26 | scanf("%lf %lf %lf %lf %lf", &p.p[3], &p.p[2], &p.p[1], &p.p[0], &p.n);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align_2d.cc: In function 'int main()':
align_2d.cc:37:8: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
37 | scanf("%d", &tc);
| ~~~~~^~~~~~~~~~~
align_2d.cc:44:8: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
44 | scanf("%d", &cc);
| ~~~~~^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from align_2d.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Prob}; _Tp = Prob; _Alloc = std::allocator<Prob>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Prob>::iterator' {aka '__gnu_cxx::__normal_iterator<Prob*, std::vector<Prob> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Prob}; _Tp = Prob; _Alloc = std::allocator<Prob>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Prob*, std::vector<Prob> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x training/realign.cc -o realign
training/realign.cc: In function 'int main()':
training/realign.cc:58:8: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
58 | scanf("%s\n", ss);
| ~~~~~^~~~~~~~~~~~
make[1]: Leaving directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3
dh_testroot -a
dh_prep -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_python3 -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms-arch
make[1]: Entering directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_fixperms -a
for bin in debian/bin/* ; do \
script=`basename ${bin} | sed 's/^deepnano_//'`.py ; \
chmod +x debian/*/usr/share/*/${script} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/deepnano/usr/lib/deepnano/realign debian/deepnano/usr/lib/deepnano/align_2d were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'deepnano-dbgsym' in '../deepnano-dbgsym_0.0+git20170813.e8a621e-3.1+b8_armhf.deb'.
dpkg-deb: building package 'deepnano' in '../deepnano_0.0+git20170813.e8a621e-3.1+b8_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../deepnano_0.0+git20170813.e8a621e-3.1+b8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-04-26T05:18:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
deepnano_0.0+git20170813.e8a621e-3.1+b8_armhf.changes:
------------------------------------------------------
Format: 1.8
Date: Sun, 03 Nov 2019 17:22:33 +0100
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Binary: deepnano deepnano-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.0+git20170813.e8a621e-3.1+b8
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
deepnano - alternative basecaller for MinION reads of genomic sequences
Changes:
deepnano (0.0+git20170813.e8a621e-3.1+b8) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
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5bfad0ae24885c5e3a6fb61187e6f064 6468 science optional deepnano_0.0+git20170813.e8a621e-3.1+b8_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
deepnano-dbgsym_0.0+git20170813.e8a621e-3.1+b8_armhf.deb
--------------------------------------------------------
new Debian package, version 2.0.
size 141344 bytes: control archive=656 bytes.
491 bytes, 12 lines control
300 bytes, 3 lines md5sums
Package: deepnano-dbgsym
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Version: 0.0+git20170813.e8a621e-3.1+b8
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 161
Depends: deepnano (= 0.0+git20170813.e8a621e-3.1+b8)
Section: debug
Priority: optional
Description: debug symbols for deepnano
Build-Ids: ab63d4c7b701611fafe366a1851a8810f3dd78c3 c56e956b609f2b8ca5f7b86a6bd5c9334beddb42
drwxr-xr-x root/root 0 2019-11-03 16:22 ./
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root 69512 2019-11-03 16:22 ./usr/lib/debug/.build-id/ab/63d4c7b701611fafe366a1851a8810f3dd78c3.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/c5/
-rw-r--r-- root/root 64396 2019-11-03 16:22 ./usr/lib/debug/.build-id/c5/6e956b609f2b8ca5f7b86a6bd5c9334beddb42.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 16684 2019-11-03 16:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/deepnano.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-11-03 16:22 ./usr/share/doc/deepnano-dbgsym -> deepnano
deepnano_0.0+git20170813.e8a621e-3.1+b8_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 19912 bytes: control archive=1488 bytes.
788 bytes, 17 lines control
1006 bytes, 14 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
390 bytes, 12 lines * prerm #!/bin/sh
Package: deepnano
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Version: 0.0+git20170813.e8a621e-3.1+b8
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 85
Depends: python3:any, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), python3-h5py, python3-numpy, python3-dateutil, python3-theano, deepnano-data
Recommends: python3-watchdog
Section: science
Priority: optional
Homepage: https://bitbucket.org/vboza/deepnano
Description: alternative basecaller for MinION reads of genomic sequences
DeepNano is alternative basecaller for Oxford Nanopore MinION reads
based on deep recurrent neural networks.
.
Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a
postprocessor for Metrichor.
drwxr-xr-x root/root 0 2019-11-03 16:22 ./
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/bin/
-rwxr-xr-x root/root 92 2019-11-03 16:22 ./usr/bin/deepnano_basecall
lrwxrwxrwx root/root 0 2019-11-03 16:22 ./usr/bin/deepnano_basecall_no_metrichor -> deepnano_basecall
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/deepnano/
-rwxr-xr-x root/root 9872 2019-11-03 16:22 ./usr/lib/deepnano/align_2d
-rwxr-xr-x root/root 13968 2019-11-03 16:22 ./usr/lib/deepnano/realign
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/deepnano/
-rwxr-xr-x root/root 6394 2019-11-03 16:22 ./usr/share/deepnano/basecall.py
-rwxr-xr-x root/root 8705 2019-11-03 16:22 ./usr/share/deepnano/basecall_no_metrichor.py
-rw-r--r-- root/root 12438 2019-11-03 16:22 ./usr/share/deepnano/basecall_no_metrichor_devel.py
-rw-r--r-- root/root 2497 2019-11-03 16:22 ./usr/share/deepnano/helpers.py
-rw-r--r-- root/root 3089 2017-08-13 17:03 ./usr/share/deepnano/rnn_fin.py
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/doc/deepnano/
-rw-r--r-- root/root 238 2019-11-03 16:22 ./usr/share/doc/deepnano/changelog.Debian.armhf.gz
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-rw-r--r-- root/root 1837 2019-11-03 16:22 ./usr/share/doc/deepnano/copyright
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/man/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/man/man1/
-rw-r--r-- root/root 925 2019-11-03 16:22 ./usr/share/man/man1/deepnano_basecall.1.gz
-rw-r--r-- root/root 878 2019-11-03 16:22 ./usr/share/man/man1/deepnano_basecall_no_metrichor.1.gz
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/python3/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root 137 2019-11-03 16:22 ./usr/share/python3/runtime.d/deepnano.rtupdate
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 128252
Build-Time: 54
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 785
Job: deepnano_0.0+git20170813.e8a621e-3.1
Machine Architecture: armhf
Package: deepnano
Package-Time: 947
Source-Version: 0.0+git20170813.e8a621e-3.1
Space: 128252
Status: successful
Version: 0.0+git20170813.e8a621e-3.1+b8
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Finished at 2020-04-26T05:18:30Z
Build needed 00:15:47, 128252k disc space