deepnano →
0.0+git20170813.e8a621e-3.1+b13 →
armhf → 2022-04-20 23:08:21
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| deepnano 0.0+git20170813.e8a621e-3.1+b13 (armhf) Wed, 20 Apr 2022 22:52:14 +0000 |
+==============================================================================+
Package: deepnano
Version: 0.0+git20170813.e8a621e-3.1+b13
Source Version: 0.0+git20170813.e8a621e-3.1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-6d632f8b-2da1-4e22-b9b4-55585b7e807c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.8 MB in 28s (942 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'deepnano' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/deepnano.git
Please use:
git clone https://salsa.debian.org/med-team/deepnano.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 100 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (dsc) [2269 B]
Get:2 http://172.17.4.1/private bookworm-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (tar) [100.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main deepnano 0.0+git20170813.e8a621e-3.1 (diff) [11.6 kB]
Fetched 100 MB in 10s (10.2 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/deepnano-P3Z7u0/deepnano-0.0+git20170813.e8a621e' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/deepnano-P3Z7u0' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JhBTu8/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JhBTu8/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JhBTu8/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2544 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 51 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano
Filtered Build-Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano
dpkg-deb: building package 'sbuild-build-depends-deepnano-dummy' in '/<<BUILDDIR>>/resolver-JhBTu8/apt_archive/sbuild-build-depends-deepnano-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-deepnano-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Sources [517 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ Packages [603 B]
Fetched 2453 B in 1s (3396 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install deepnano build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gcc-12-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas-dev
libblas3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu67 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc
libmagic1 libmpdec3 libpipeline1 libpython3-dev libpython3-stdlib
libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsmartcols1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-decorator python3-dev
python3-distutils python3-importlib-metadata python3-lib2to3
python3-markdown python3-minimal python3-more-itertools python3-numpy
python3-pkg-resources python3-scipy python3-six python3-theano python3-zipp
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-minimal
zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-markdown-doc gfortran python-numpy-doc python3-pytest
python3-setuptools python-scipy-doc nvidia-cuda-toolkit python3-pycuda
theano-doc python3.10-venv python3.10-doc binfmt-support python3.9-venv
python3.9-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common ca-certificates
libltdl-dev libmail-sendmail-perl python3-pygments python3-yaml python3-pil
python3-pydot python3-nose python3-parameterized python3-pygpu
libgpuarray-dev cython3 graphviz
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gcc-12-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas-dev
libblas3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu67 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc
libmagic1 libmpdec3 libpipeline1 libpython3-dev libpython3-stdlib
libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-all python3-decorator python3-dev python3-distutils
python3-importlib-metadata python3-lib2to3 python3-markdown python3-minimal
python3-more-itertools python3-numpy python3-pkg-resources python3-scipy
python3-six python3-theano python3-zipp python3.10 python3.10-dev
python3.10-minimal python3.9 python3.9-minimal
sbuild-build-depends-deepnano-dummy zlib1g-dev
The following packages will be upgraded:
libsmartcols1 zlib1g
2 upgraded, 75 newly installed, 0 to remove and 49 not upgraded.
Need to get 56.3 MB of archives.
After this operation, 254 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JhBTu8/apt_archive ./ sbuild-build-depends-deepnano-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.4-1 [811 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1 [38.6 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf media-types all 7.1.0 [33.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1 [21.7 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1 [38.1 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7 [195 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7 [1070 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-2 [114 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf python3-markdown all 3.3.6-1 [71.7 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2+b1 [13.0 MB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-theano armhf 1.0.5+dfsg-5 [2021 kB]
debconf: delaying package configuration, since apt-utils is not installed
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblas-dev_3.10.0-2 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.7 libdpkg-perl_1.21.2+rpi1 libelf1_0.186-1 libexpat1_2.4.8-1 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libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpython3-dev_3.10.4-1 libpython3-stdlib_3.10.4-1 libpython3.10_3.10.4-1 libpython3.10-dev_3.10.4-1 libpython3.10-minimal_3.10.4-1 libpython3.10-stdlib_3.10.4-1 libpython3.9-minimal_3.9.12-1+rpi1 libpython3.9-stdlib_3.9.12-1+rpi1 libreadline8_8.1.2-1 libsasl2-2_2.1.28+dfsg-2+b1 libsasl2-modules-db_2.1.28+dfsg-2+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.1-1 libss2_1.46.5-2 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-3 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.4.9+dfsg-1+rpi1 linux-libc-dev_5.16.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_7.1.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.10.4-1 python3-all_3.10.4-1 python3-decorator_4.4.2-2 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-importlib-metadata_4.6.4-1 python3-lib2to3_3.9.12-1 python3-markdown_3.3.6-1 python3-minimal_3.10.4-1 python3-more-itertools_8.10.0-2 python3-numpy_1:1.21.5-1+b1 python3-pkg-resources_59.6.0-1.2 python3-scipy_1.7.3-2+b1 python3-six_1.16.0-3 python3-theano_1.0.5+dfsg-5 python3-zipp_1.0.0-3 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-deepnano-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.wQUsh2dx/trustedkeys.kbx': General error
gpgv: Signature made Sun Nov 3 17:06:14 2019 UTC
gpgv: using RSA key A0B1A9F3508956130E7A425CD416AD15AC6B43FE
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./deepnano_0.0+git20170813.e8a621e-3.1.dsc
dpkg-source: info: extracting deepnano in /<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e
dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e.orig.tar.xz
dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying she_bang.patch
dpkg-source: info: applying path_align_2d.patch
dpkg-source: info: applying py3-compat.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.0+git20170813.e8a621e-3.1+b13
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-6d632f8b-2da1-4e22-b9b4-55585b7e807c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package deepnano
dpkg-buildpackage: info: source version 0.0+git20170813.e8a621e-3.1+b13
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3
dh_clean
debian/rules build-arch
dh build-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_auto_build
python3 -m markdown -f README.html README.md
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x align_2d.cc -o align_2d
align_2d.cc: In function 'Prob LoadProb(int)':
align_2d.cc:16:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
16 | scanf("%lf %lf %lf %lf %lf", &p.p[0], &p.p[1], &p.p[2], &p.p[3], &p.n);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align_2d.cc: In function 'Prob LoadProbC(int)':
align_2d.cc:26:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
26 | scanf("%lf %lf %lf %lf %lf", &p.p[3], &p.p[2], &p.p[1], &p.p[0], &p.n);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align_2d.cc: In function 'int main()':
align_2d.cc:37:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
37 | scanf("%d", &tc);
| ~~~~~^~~~~~~~~~~
align_2d.cc:44:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
44 | scanf("%d", &cc);
| ~~~~~^~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from align_2d.cc:2:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Prob}; _Tp = Prob; _Alloc = std::allocator<Prob>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Prob>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Prob}; _Tp = Prob; _Alloc = std::allocator<Prob>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Prob*, std::vector<Prob> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x training/realign.cc -o realign
training/realign.cc: In function 'int main()':
training/realign.cc:58:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
58 | scanf("%s\n", ss);
| ~~~~~^~~~~~~~~~~~
make[1]: Leaving directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3
dh_testroot -a
dh_prep -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_python3 -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms-arch
make[1]: Entering directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_fixperms -a
for bin in debian/bin/* ; do \
script=`basename ${bin} | sed 's/^deepnano_//'`.py ; \
chmod +x debian/*/usr/share/*/${script} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/deepnano-0.0+git20170813.e8a621e'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/deepnano/usr/lib/deepnano/realign debian/deepnano/usr/lib/deepnano/align_2d were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'deepnano-dbgsym' in '../deepnano-dbgsym_0.0+git20170813.e8a621e-3.1+b13_armhf.deb'.
dpkg-deb: building package 'deepnano' in '../deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.deb'.
dpkg-genbuildinfo --build=any -O../deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-20T23:08:15Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.changes:
-------------------------------------------------------
Format: 1.8
Date: Sun, 03 Nov 2019 17:22:33 +0100
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Binary: deepnano deepnano-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.0+git20170813.e8a621e-3.1+b13
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
deepnano - alternative basecaller for MinION reads of genomic sequences
Changes:
deepnano (0.0+git20170813.e8a621e-3.1+b13) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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Files:
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8dd7c7e61a948d531d6b8893ebb9631b 6940 science optional deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.buildinfo
1a096de77fe9bc62f248e7e3329bebd0 19744 science optional deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
deepnano-dbgsym_0.0+git20170813.e8a621e-3.1+b13_armhf.deb
---------------------------------------------------------
new Debian package, version 2.0.
size 140256 bytes: control archive=660 bytes.
493 bytes, 12 lines control
300 bytes, 3 lines md5sums
Package: deepnano-dbgsym
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Version: 0.0+git20170813.e8a621e-3.1+b13
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 160
Depends: deepnano (= 0.0+git20170813.e8a621e-3.1+b13)
Section: debug
Priority: optional
Description: debug symbols for deepnano
Build-Ids: 6dd8da53df407bccd66c2bd5a9ae5fe9fb3f2c03 a40db047c233596bf409bb9feb27c590d8e6a0da
drwxr-xr-x root/root 0 2019-11-03 16:22 ./
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/6d/
-rw-r--r-- root/root 69424 2019-11-03 16:22 ./usr/lib/debug/.build-id/6d/d8da53df407bccd66c2bd5a9ae5fe9fb3f2c03.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.build-id/a4/
-rw-r--r-- root/root 64204 2019-11-03 16:22 ./usr/lib/debug/.build-id/a4/0db047c233596bf409bb9feb27c590d8e6a0da.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 15708 2019-11-03 16:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/deepnano.debug
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-11-03 16:22 ./usr/share/doc/deepnano-dbgsym -> deepnano
deepnano_0.0+git20170813.e8a621e-3.1+b13_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 19744 bytes: control archive=1500 bytes.
788 bytes, 17 lines control
1006 bytes, 14 lines md5sums
301 bytes, 12 lines * postinst #!/bin/sh
407 bytes, 12 lines * prerm #!/bin/sh
Package: deepnano
Source: deepnano (0.0+git20170813.e8a621e-3.1)
Version: 0.0+git20170813.e8a621e-3.1+b13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 89
Depends: python3:any, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), python3-h5py, python3-numpy, python3-dateutil, python3-theano, deepnano-data
Recommends: python3-watchdog
Section: science
Priority: optional
Homepage: https://bitbucket.org/vboza/deepnano
Description: alternative basecaller for MinION reads of genomic sequences
DeepNano is alternative basecaller for Oxford Nanopore MinION reads
based on deep recurrent neural networks.
.
Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a
postprocessor for Metrichor.
drwxr-xr-x root/root 0 2019-11-03 16:22 ./
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/bin/
-rwxr-xr-x root/root 92 2019-11-03 16:22 ./usr/bin/deepnano_basecall
lrwxrwxrwx root/root 0 2019-11-03 16:22 ./usr/bin/deepnano_basecall_no_metrichor -> deepnano_basecall
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/lib/deepnano/
-rwxr-xr-x root/root 13968 2019-11-03 16:22 ./usr/lib/deepnano/align_2d
-rwxr-xr-x root/root 13968 2019-11-03 16:22 ./usr/lib/deepnano/realign
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/deepnano/
-rwxr-xr-x root/root 6394 2019-11-03 16:22 ./usr/share/deepnano/basecall.py
-rwxr-xr-x root/root 8705 2019-11-03 16:22 ./usr/share/deepnano/basecall_no_metrichor.py
-rw-r--r-- root/root 12438 2019-11-03 16:22 ./usr/share/deepnano/basecall_no_metrichor_devel.py
-rw-r--r-- root/root 2497 2019-11-03 16:22 ./usr/share/deepnano/helpers.py
-rw-r--r-- root/root 3089 2017-08-13 17:03 ./usr/share/deepnano/rnn_fin.py
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drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/doc/deepnano/
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drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/man/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/man/man1/
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drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/python3/
drwxr-xr-x root/root 0 2019-11-03 16:22 ./usr/share/python3/runtime.d/
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 128224
Build-Time: 59
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 790
Job: deepnano_0.0+git20170813.e8a621e-3.1
Machine Architecture: armhf
Package: deepnano
Package-Time: 961
Source-Version: 0.0+git20170813.e8a621e-3.1
Space: 128224
Status: successful
Version: 0.0+git20170813.e8a621e-3.1+b13
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Finished at 2022-04-20T23:08:15Z
Build needed 00:16:01, 128224k disc space