clustalo →
1.2.0-1 →
armhf → 2013-07-18 01:44:06
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ clustalo 1.2.0-1 (armhf) 18 Jul 2013 01:26 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: clustalo
Version: 1.2.0-1
Source Version: 1.2.0-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/clustalo-8eHOtD/clustalo-1.2.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/clustalo-8eHOtD' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-823d0c70-a22b-4222-855c-3e65ce8f9fd0' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6672 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7818 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.5 MB in 2min 9s (112 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'clustalo' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/clustalo/trunk/
Need to get 1163 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main clustalo 1.2.0-1 (dsc) [2100 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main clustalo 1.2.0-1 (tar) [1157 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main clustalo 1.2.0-1 (diff) [3730 B]
Fetched 1163 kB in 4s (251 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8gcpbj/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
Need to get 0 B/706 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11338 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libargtable2-dev, doxygen, graphviz
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libargtable2-dev, doxygen, graphviz
dpkg-deb: building package `sbuild-build-depends-clustalo-dummy' in `/«BUILDDIR»/resolver-0dLpXo/apt_archive/sbuild-build-depends-clustalo-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install clustalo build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper doxygen file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian
libargtable2-0 libargtable2-dev libargtable2-docs libasprintf0c2 libcairo2
libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
libfreetype6 libgd3 libglib2.0-0 libgraph4 libgraphite2-3 libgvc5 libgvpr1
libharfbuzz0a libice6 libjbig0 libjpeg8 libltdl7 libmagic1 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1
libpixman-1-0 libpng12-0 libsm6 libthai-data libthai0 libtiff4 libunistring0
libvpx1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4 libxrender1
libxt6 man-db po-debconf ttf-dejavu-core ucf x11-common
Suggested packages:
wamerican wordlist whois vacation dh-make doxygen-doc doxygen-gui
gettext-doc gsfonts graphviz-doc groff libgd-tools ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl
Recommended packages:
doxygen-latex curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
ttf-liberation libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper doxygen file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian
libargtable2-0 libargtable2-dev libargtable2-docs libasprintf0c2 libcairo2
libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
libfreetype6 libgd3 libglib2.0-0 libgraph4 libgraphite2-3 libgvc5 libgvpr1
libharfbuzz0a libice6 libjbig0 libjpeg8 libltdl7 libmagic1 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1
libpixman-1-0 libpng12-0 libsm6 libthai-data libthai0 libtiff4 libunistring0
libvpx1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4 libxrender1
libxt6 man-db po-debconf sbuild-build-depends-clustalo-dummy ttf-dejavu-core
ucf x11-common
0 upgraded, 71 newly installed, 0 to remove and 32 not upgraded.
Need to get 23.9 MB/24.0 MB of archives.
After this operation, 52.4 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.2.1-1 [28.4 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-2 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-3 [117 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.10.2-2 [306 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.26.0-4 [413 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.0-1 [191 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.0-1 [857 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.9.1-3 [16.8 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.9.1-3 [10.4 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.14-4 [936 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.3-3 [1905 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.6-2 [27.0 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libtiff4 armhf 3.9.7-1 [188 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libvpx1 armhf 1.1.0-1+rpi1 [201 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libxpm4 armhf 1:3.5.10-1 [44.9 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libgd3 armhf 2.1.0-2 [157 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.3-1 [55.0 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0a armhf 0.9.18-3 [394 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+3 [284 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libltdl7 armhf 2.4.2-1.3 [349 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.19-2 [156 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.19-2 [40.5 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.10.2-2 [374 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.32.5-5 [251 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.32.5-5 [186 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.32.5-5 [176 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.3-1+deb7u1 [181 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.1-1 [59.1 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libxaw7 armhf 2:1.0.11-1 [195 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.2.1-1 [131 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.2.1-1 [1932 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130630 [710 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main doxygen armhf 1.8.4-1 [2502 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libcdt4 armhf 2.26.3-15 [57.5 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libcgraph5 armhf 2.26.3-15 [80.2 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libgraph4 armhf 2.26.3-15 [69.6 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libpathplan4 armhf 2.26.3-15 [62.8 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libxdot4 armhf 2.26.3-15 [53.3 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libgvc5 armhf 2.26.3-15 [483 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libgvpr1 armhf 2.26.3-15 [232 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main graphviz armhf 2.26.3-15 [349 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libargtable2-0 armhf 12-1 [17.0 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libargtable2-docs all 12-1 [2958 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libargtable2-dev armhf 12-1 [57.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.2.4-1) ...
Setting up groff-base (1.22.2-3) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.2.1-1) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-2) ...
Setting up libexpat1:armhf (2.1.0-3) ...
Setting up libfreetype6:armhf (2.4.9-1.1) ...
Setting up ucf (3.0027+nmu1) ...
Setting up fonts-dejavu-core (2.33+svn2514-3) ...
Setting up ttf-dejavu-core (2.33+svn2514-3) ...
Setting up fontconfig-config (2.10.2-2) ...
Setting up libfontconfig1:armhf (2.10.2-2) ...
Setting up libpixman-1-0:armhf (0.26.0-4) ...
Setting up libpng12-0:armhf (1.2.49-4) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
Setting up libxcb1:armhf (1.9.1-3) ...
Setting up libx11-data (2:1.6.0-1) ...
Setting up libx11-6:armhf (2:1.6.0-1) ...
Setting up libxcb-render0:armhf (1.9.1-3) ...
Setting up libxcb-shm0:armhf (1.9.1-3) ...
Setting up libxext6:armhf (2:1.3.2-1) ...
Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.12.14-4) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.3-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libdatrie1:armhf (0.2.6-2) ...
Setting up libjpeg8:armhf (8d-1) ...
Setting up libjbig0:armhf (2.0-2) ...
Setting up libtiff4:armhf (3.9.7-1) ...
Setting up libvpx1:armhf (1.1.0-1+rpi1) ...
Setting up libxpm4:armhf (1:3.5.10-1) ...
Setting up libgd3:armhf (2.1.0-2) ...
Setting up libgraphite2-3:armhf (1.2.3-1) ...
Setting up libharfbuzz0a:armhf (0.9.18-3) ...
Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up libltdl7:armhf (2.4.2-1.3) ...
Setting up libthai-data (0.1.19-2) ...
Setting up libthai0:armhf (0.1.19-2) ...
Setting up fontconfig (2.10.2-2) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:armhf (1.32.5-5) ...
Setting up libpangoft2-1.0-0:armhf (1.32.5-5) ...
Setting up libpangocairo-1.0-0:armhf (1.32.5-5) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libxt6:armhf (1:1.1.3-1+deb7u1) ...
Setting up libxmu6:armhf (2:1.1.1-1) ...
Setting up libxaw7:armhf (2:1.0.11-1) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.2.1-1) ...
Setting up gettext (0.18.2.1-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130630) ...
Setting up doxygen (1.8.4-1) ...
Setting up libcdt4 (2.26.3-15) ...
Setting up libcgraph5 (2.26.3-15) ...
Setting up libgraph4 (2.26.3-15) ...
Setting up libpathplan4 (2.26.3-15) ...
Setting up libxdot4 (2.26.3-15) ...
Setting up libgvc5 (2.26.3-15) ...
Setting up libgvpr1 (2.26.3-15) ...
Setting up graphviz (2.26.3-15) ...
Setting up libargtable2-0 (12-1) ...
Setting up libargtable2-docs (12-1) ...
Setting up libargtable2-dev (12-1) ...
Setting up sbuild-build-depends-clustalo-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.9.8-imx5 armhf (armv7l)
Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-3 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 coreutils_8.13-3.5 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debianutils_4.3.4 diffutils_1:3.2-8 doxygen_1.8.4-1 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 fontconfig_2.10.2-2 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.0-7+rpi1 gettext_0.18.2.1-1 gettext-base_0.18.2.1-1 gnupg_1.4.12-7 gpgv_1.4.12-7 graphviz_2.26.3-15 grep_2.14-2 groff-base_1.22.2-3 gzip_1.5-1.1 hostname_3.12 initramfs-tools_0.112 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libargtable2-0_12-1 libargtable2-dev_12-1 libargtable2-docs_12-1 libasprintf0c2_0.18.2.1-1 libattr1_1:2.4.47-1 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libc-bin_2.17-3 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libcdt4_2.26.3-15 libcgraph5_2.26.3-15 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdbus-1-3_1.6.10-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7+rpi1 libgd3_2.1.0-2 libgdbm3_1.8.3-12 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-1 libgomp1_4.8.0-7+rpi1 libgraph4_2.26.3-15 libgraphite2-3_1.2.3-1 libgvc5_2.26.3-15 libgvpr1_2.26.3-15 libharfbuzz0a_0.9.18-3 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblocale-gettext-perl_1.05-7 libltdl7_2.4.2-1.3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.4 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncursesw5_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.32.5-5 libpangocairo-1.0-0_1.32.5-5 libpangoft2-1.0-0_1.32.5-5 libpathplan4_2.26.3-15 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libprocps0_1:3.3.4-2 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff4_3.9.7-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130504-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libvpx1_1.1.0-1+rpi1 libx11-6_2:1.6.0-1 libx11-data_2:1.6.0-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.11-1 libxcb-render0_1.9.1-3 libxcb-shm0_1.9.1-3 libxcb1_1.9.1-3 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-15 libxext6_2:1.3.2-1 libxml2_2.9.1+dfsg1-2 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrender1_1:0.9.8-1 libxt6_1:1.1.3-1+deb7u1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.4 multiarch-support_2.17-3 ncurses-base_5.9+20130504-1 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-clustalo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-6 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013c-2 ucf_3.0027+nmu1 udev_175-7.2 util-linux_2.20.1-5.4 x11-common_1:7.7+3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Jul 6 07:30:50 2013 UTC using RSA key ID 326D8438
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./clustalo_1.2.0-1.dsc
dpkg-source: info: extracting clustalo in clustalo-1.2.0
dpkg-source: info: unpacking clustalo_1.2.0.orig.tar.gz
dpkg-source: info: unpacking clustalo_1.2.0-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
MAIL=/var/mail/buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/var/lib/buildd
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-823d0c70-a22b-4222-855c-3e65ce8f9fd0
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
TERM=xterm
USER=buildd
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1373317570.632329-1088147074
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package clustalo
dpkg-buildpackage: source version 1.2.0-1
dpkg-source --before-build clustalo-1.2.0
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_clean
rm -f _configs.sed
rm -rf doc
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
configure: WARNING: unrecognized options: --disable-maintainer-mode
configure:
Welcome to Clustal Omega - version 1.2.0 (AndreaGiacomo)
+NMMMMMMMMMS=
MMMMM? :MMMMM8
IMMMMS MMMMM,
~MMMMN ,MMMMM
=MMMMM MMMMM
?MMMMM +MMMMM
MMMMMS MMMMM
MMMMM MMMMM:
MMMMM MMMMM+
MMMMM MMMMM~
MMMMM MMMMM
MMMMMZ MMMMM
MMMMM ,MMMMZ
MMMM8 MMMM+
MMMMS MMMM,
MMMMO MMMM
,N SMMM MMM8 +8
,M7 M+ M+ :M8
,MMMMMMMMMMMMI MMMMMMMMMMMM8
,MMMMMMMMMMMM8 MMMMMMMMMMMM8
,MMMMMMMMMMMMN MMMMMMMMMMMM8
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) none
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to run the C++ preprocessor... g++ -E
checking for ANSI C header files... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for memory.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for inline... inline
checking for log in -lm... yes
checking for log2 in -lm... yes
checking argtable2.h usability... yes
checking argtable2.h presence... yes
checking for argtable2.h... yes
checking for arg_parse in -largtable2... yes
checking for OpenMP flag of C compiler... -fopenmp
checking whether byte ordering is bigendian... no
checking for ntohs... yes
checking for ntohl... yes
checking for ntons... no
checking for ntonl... no
checking size of unsigned short... 2
checking size of unsigned int... 4
checking size of unsigned long... 4
checking size of unsigned long long... 8
checking for stroul... no
checking for strtoull... yes
checking for ftello... yes
checking for fseeko... yes
checking for ftello64... yes
checking for fseeko64... yes
checking for ftell64... no
checking for fseek64... no
checking for off_t... yes
checking size of fpos_t... 12
checking if malloc debugging is wanted... no
checking whether to build with debug information... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating clustalo.pc
config.status: creating Doxyfile
config.status: creating src/clustal/Makefile
config.status: creating src/hhalign/Makefile
config.status: creating src/kmpp/Makefile
config.status: creating src/squid/Makefile
config.status: creating src/config.h
config.status: executing src/clustal-omega-config.h commands
config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making all in src
make[2]: Entering directory `/«PKGBUILDDIR»/src'
make all-recursive
make[3]: Entering directory `/«PKGBUILDDIR»/src'
Making all in hhalign
make[4]: Entering directory `/«PKGBUILDDIR»/src/hhalign'
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c hhalign.cpp -o hhalign.o >/dev/null 2>&1
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libtool: link: ar cru .libs/libhhalign.a .libs/hhalign.o
libtool: link: ranlib .libs/libhhalign.a
libtool: link: ( cd ".libs" && rm -f "libhhalign.la" && ln -s "../libhhalign.la" "libhhalign.la" )
make[4]: Leaving directory `/«PKGBUILDDIR»/src/hhalign'
Making all in squid
make[4]: Entering directory `/«PKGBUILDDIR»/src/squid'
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/a2m.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c a2m.c -o a2m.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/aligneval.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c aligneval.c -o aligneval.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/alignio.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c alignio.c -o alignio.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o clustal.lo clustal.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/clustal.o
clustal.c: In function 'WriteClustal':
clustal.c:395:15: warning: extra tokens at end of #ifdef directive [enabled by default]
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c clustal.c -o clustal.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o cluster.lo cluster.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/cluster.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c cluster.c -o cluster.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o dayhoff.lo dayhoff.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/dayhoff.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c dayhoff.c -o dayhoff.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/eps.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c eps.c -o eps.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o file.lo file.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/file.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c file.c -o file.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o getopt.lo getopt.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/getopt.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c getopt.c -o getopt.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gki.lo gki.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/gki.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gki.c -o gki.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gsi.lo gsi.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gsi.c -fPIC -DPIC -o .libs/gsi.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gsi.c -o gsi.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gsi64.lo gsi64.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gsi64.c -fPIC -DPIC -o .libs/gsi64.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gsi64.c -o gsi64.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hsregex.lo hsregex.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/hsregex.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c hsregex.c -o hsregex.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o iupac.lo iupac.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/iupac.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c iupac.c -o iupac.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/msa.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c msa.c -o msa.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c msf.c -fPIC -DPIC -o .libs/msf.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c msf.c -o msf.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/phylip.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c phylip.c -o phylip.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/revcomp.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c revcomp.c -o revcomp.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/rk.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c rk.c -o rk.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/selex.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c selex.c -o selex.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/seqencode.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c seqencode.c -o seqencode.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/shuffle.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c shuffle.c -o shuffle.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/sqerror.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/squidcore.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c squidcore.c -o squidcore.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sre_math.c -o sre_math.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/sre_random.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sre_random.c -o sre_random.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sre_string.c -o sre_string.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/ssi.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c ssi.c -o ssi.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c stack.c -fPIC -DPIC -o .libs/stack.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c stack.c -o stack.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c stockholm.c -o stockholm.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/stopwatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c stopwatch.c -o stopwatch.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c translate.c -o translate.o >/dev/null 2>&1
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libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" )
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Making all in kmpp
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c pair_dist.c -fPIC -DPIC -o .libs/pair_dist.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c pair_dist.c -o pair_dist.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o progress.lo progress.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c progress.c -fPIC -DPIC -o .libs/progress.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c progress.c -o progress.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o seq.lo seq.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c seq.c -fPIC -DPIC -o .libs/seq.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c seq.c -o seq.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o symmatrix.lo symmatrix.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c symmatrix.c -fPIC -DPIC -o .libs/symmatrix.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c symmatrix.c -o symmatrix.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o tree.lo tree.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c tree.c -fPIC -DPIC -o .libs/tree.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c tree.c -o tree.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o util.lo util.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c util.c -fPIC -DPIC -o .libs/util.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c util.c -o util.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o weights.lo weights.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c weights.c -fPIC -DPIC -o .libs/weights.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c weights.c -o weights.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=link gcc -fopenmp -O3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm
libtool: link: ar cru .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o
libtool: link: ranlib .libs/libclustal.a
libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" )
make[4]: Leaving directory `/«PKGBUILDDIR»/src/clustal'
make[4]: Entering directory `/«PKGBUILDDIR»/src'
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o clustal-omega.lo clustal-omega.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c clustal-omega.c -o clustal-omega.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -static -Wl,-z,relro -o libclustalo.la -rpath /usr/lib/arm-linux-gnueabihf clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm
libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/«PKGBUILDDIR»/src/clustal/.libs/libclustal.a")
libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/«PKGBUILDDIR»/src/hhalign/.libs/libhhalign.a")
libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/«PKGBUILDDIR»/src/squid/.libs/libsquid.a")
libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/«PKGBUILDDIR»/src/kmpp/.libs/libkmpp.a")
libtool: link: ar cru .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o
libtool: link: ranlib .libs/libclustalo.a
libtool: link: rm -fr .libs/libclustalo.lax
libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" )
g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o main.o main.cpp
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c mymain.c
/bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm
libtool: link: g++ -O3 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/libargtable2.so -lm
make[4]: Leaving directory `/«PKGBUILDDIR»/src'
make[3]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_auto_test -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making check in src
make[2]: Entering directory `/«PKGBUILDDIR»/src'
Making check in hhalign
make[3]: Entering directory `/«PKGBUILDDIR»/src/hhalign'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/src/hhalign'
Making check in squid
make[3]: Entering directory `/«PKGBUILDDIR»/src/squid'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/src/squid'
Making check in kmpp
make[3]: Entering directory `/«PKGBUILDDIR»/src/kmpp'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/src/kmpp'
Making check in clustal
make[3]: Entering directory `/«PKGBUILDDIR»/src/clustal'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/src/clustal'
make[3]: Entering directory `/«PKGBUILDDIR»/src'
make[3]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making install in src
make[2]: Entering directory `/«PKGBUILDDIR»/src'
Making install in hhalign
make[3]: Entering directory `/«PKGBUILDDIR»/src/hhalign'
make[4]: Entering directory `/«PKGBUILDDIR»/src/hhalign'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/include/clustalo/hhalign" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/hhalign"
/usr/bin/install -c -m 644 'general.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/hhalign/general.h'
/usr/bin/install -c -m 644 'hhfunc.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/hhalign/hhfunc.h'
make[4]: Leaving directory `/«PKGBUILDDIR»/src/hhalign'
make[3]: Leaving directory `/«PKGBUILDDIR»/src/hhalign'
Making install in squid
make[3]: Entering directory `/«PKGBUILDDIR»/src/squid'
make[4]: Entering directory `/«PKGBUILDDIR»/src/squid'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/include/clustalo/squid" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid"
/usr/bin/install -c -m 644 'gki.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/gki.h'
/usr/bin/install -c -m 644 'gsi64.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/gsi64.h'
/usr/bin/install -c -m 644 'msa.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/msa.h'
/usr/bin/install -c -m 644 'rk.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/rk.h'
/usr/bin/install -c -m 644 'squid.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/squid.h'
/usr/bin/install -c -m 644 'stopwatch.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/stopwatch.h'
/usr/bin/install -c -m 644 'sqfuncs.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/sqfuncs.h'
/usr/bin/install -c -m 644 'sre_random.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/sre_random.h'
/usr/bin/install -c -m 644 'ssi.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/ssi.h'
/usr/bin/install -c -m 644 'stockholm.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/stockholm.h'
/usr/bin/install -c -m 644 'vectorops.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/vectorops.h'
/usr/bin/install -c -m 644 'version.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/squid/version.h'
make[4]: Leaving directory `/«PKGBUILDDIR»/src/squid'
make[3]: Leaving directory `/«PKGBUILDDIR»/src/squid'
Making install in kmpp
make[3]: Entering directory `/«PKGBUILDDIR»/src/kmpp'
make[4]: Entering directory `/«PKGBUILDDIR»/src/kmpp'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/src/kmpp'
make[3]: Leaving directory `/«PKGBUILDDIR»/src/kmpp'
Making install in clustal
make[3]: Entering directory `/«PKGBUILDDIR»/src/clustal'
make[4]: Entering directory `/«PKGBUILDDIR»/src/clustal'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/include/clustalo/clustal" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal"
/usr/bin/install -c -m 644 'hhalign_wrapper.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/hhalign_wrapper.h'
/usr/bin/install -c -m 644 'ktuple_pair.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/ktuple_pair.h'
/usr/bin/install -c -m 644 'log.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/log.h'
/usr/bin/install -c -m 644 'mbed.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/mbed.h'
/usr/bin/install -c -m 644 'muscle_tree.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/muscle_tree.h'
/usr/bin/install -c -m 644 'pair_dist.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/pair_dist.h'
/usr/bin/install -c -m 644 'progress.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/progress.h'
/usr/bin/install -c -m 644 'seq.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/seq.h'
/usr/bin/install -c -m 644 'symmatrix.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/symmatrix.h'
/usr/bin/install -c -m 644 'tree.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/tree.h'
/usr/bin/install -c -m 644 'util.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/util.h'
/usr/bin/install -c -m 644 'weights.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/clustal/weights.h'
make[4]: Leaving directory `/«PKGBUILDDIR»/src/clustal'
make[3]: Leaving directory `/«PKGBUILDDIR»/src/clustal'
make[3]: Entering directory `/«PKGBUILDDIR»/src'
make[4]: Entering directory `/«PKGBUILDDIR»/src'
test -z "/usr/lib/arm-linux-gnueabihf" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf"
/bin/bash ../libtool --mode=install /usr/bin/install -c 'libclustalo.la' '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.la'
libtool: install: /usr/bin/install -c .libs/libclustalo.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.la
libtool: install: /usr/bin/install -c .libs/libclustalo.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/bin"
/bin/bash ../libtool --mode=install /usr/bin/install -c 'clustalo' '/«PKGBUILDDIR»/debian/tmp/usr/bin/clustalo'
libtool: install: /usr/bin/install -c clustalo /«PKGBUILDDIR»/debian/tmp/usr/bin/clustalo
test -z "/usr/include/clustalo/" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo/"
/usr/bin/install -c -m 644 'clustal-omega-config.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo//clustal-omega-config.h'
/usr/bin/install -c -m 644 'clustal-omega.h' '/«PKGBUILDDIR»/debian/tmp/usr/include/clustalo//clustal-omega.h'
make[4]: Leaving directory `/«PKGBUILDDIR»/src'
make[3]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Leaving directory `/«PKGBUILDDIR»/src'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/doc/clustal-omega" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/share/doc/clustal-omega"
/usr/bin/install -c -m 644 'README' '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/clustal-omega/README'
test -z "/usr/lib/arm-linux-gnueabihf/pkgconfig" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig"
/usr/bin/install -c -m 644 'clustalo.pc' '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/clustalo.pc'
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_install
make[1]: Entering directory `/«PKGBUILDDIR»'
# Generate doxygen doc
mkdir -p doc
doxygen Doxyfile
Warning: Tag `SYMBOL_CACHE_SIZE' at line 289 of file Doxyfile has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Warning: Tag `SHOW_DIRECTORIES' at line 473 of file Doxyfile has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Warning: Tag `HTML_ALIGN_MEMBERS' at line 799 of file Doxyfile has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTPATH.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
/«PKGBUILDDIR»/src/clustal-omega.c:712: Warning: The following parameters of AlignmentOrder(int **piOrderLR_p, double **pdSeqWeights_p, mseq_t *prMSeq, int iPairDistType, char *pcDistmatInfile, char *pcDistmatOutfile, int iClusteringType, int iClustersizes, char *pcGuidetreeInfile, char *pcGuidetreeOutfile, char *pcClusterFile, bool bUseMbed, bool bPercID) are not documented:
parameter 'iClustersizes'
parameter 'pcClusterFile'
parameter 'bPercID'
/«PKGBUILDDIR»/src/clustal-omega.c:712: Warning: The following parameters of AlignmentOrder(int **piOrderLR_p, double **pdSeqWeights_p, mseq_t *prMSeq, int iPairDistType, char *pcDistmatInfile, char *pcDistmatOutfile, int iClusteringType, int iClustersizes, char *pcGuidetreeInfile, char *pcGuidetreeOutfile, char *pcClusterFile, bool bUseMbed, bool bPercID) are not documented:
parameter 'iClustersizes'
parameter 'pcClusterFile'
parameter 'bPercID'
/«PKGBUILDDIR»/src/clustal/mbed.c:640: Warning: The following parameters of BisectingKmeans(bisecting_kmeans_result_t **prKMeansResult_p, const int iNObjs, const int iDim, double **ppdVectors, const int iMinRequiredObjsPerCluster, const int iMaxAllowedObjsPerCluster, char ***ppcClusterSplits_p) are not documented:
parameter 'ppcClusterSplits_p'
/«PKGBUILDDIR»/src/clustal/mbed.c:1127: Warning: The following parameters of Mbed(tree_t **prMbedTree_p, mseq_t *prMSeq, const int iPairDistType, const char *pcGuidetreeOut, int iClustersizes, const char *pcClusterFile) are not documented:
parameter 'iClustersizes'
parameter 'pcClusterFile'
/«PKGBUILDDIR»/src/clustal/mbed.c:1127: Warning: The following parameters of Mbed(tree_t **prMbedTree_p, mseq_t *prMSeq, const int iPairDistType, const char *pcGuidetreeOut, int iClustersizes, const char *pcClusterFile) are not documented:
parameter 'iClustersizes'
parameter 'pcClusterFile'
/«PKGBUILDDIR»/src/clustal/pair_dist.c:259: Warning: Unsupported xml/html tag <j> found
/«PKGBUILDDIR»/src/clustal/pair_dist.c:265: Warning: Unsupported xml/html tag <j> found
/«PKGBUILDDIR»/src/clustal/pair_dist.c:244: Warning: The following parameters of PairDistances(symmatrix_t **distmat, mseq_t *mseq, int pairdist_type, bool bPercID, int istart, int iend, int jstart, int jend, char *fdist_in, char *fdist_out) are not documented:
parameter 'bPercID'
/«PKGBUILDDIR»/src/clustal/pair_dist.c:259: Warning: Unsupported xml/html tag <j> found
/«PKGBUILDDIR»/src/clustal/pair_dist.c:265: Warning: Unsupported xml/html tag <j> found
/«PKGBUILDDIR»/src/clustal/pair_dist.c:244: Warning: The following parameters of PairDistances(symmatrix_t **distmat, mseq_t *mseq, int pairdist_type, bool bPercID, int istart, int iend, int jstart, int jend, char *fdist_in, char *fdist_out) are not documented:
parameter 'bPercID'
/«PKGBUILDDIR»/src/clustal/seq.c:397: Warning: The following parameters of ReadSequences(mseq_t *prMSeq, char *seqfile, int iSeqType, int iSeqFmt, bool bIsProfile, int iMaxNumSeq, int iMaxSeqLen) are not documented:
parameter 'iSeqFmt'
parameter 'bIsProfile'
/«PKGBUILDDIR»/src/clustal/seq.c:1012: Warning: The following parameters of SeqsAreAligned(mseq_t *prMSeq, bool bIsProfile) are not documented:
parameter 'bIsProfile'
/«PKGBUILDDIR»/src/clustal/seq.c:777: Warning: The following parameters of WriteAlignment(mseq_t *mseq, const char *pcAlnOutfile, int outfmt, int iWrap, bool bResno) are not documented:
parameter 'bResno'
/«PKGBUILDDIR»/src/clustal/seq.c:397: Warning: The following parameters of ReadSequences(mseq_t *prMSeq, char *seqfile, int iSeqType, int iSeqFmt, bool bIsProfile, int iMaxNumSeq, int iMaxSeqLen) are not documented:
parameter 'iSeqFmt'
parameter 'bIsProfile'
/«PKGBUILDDIR»/src/clustal/seq.c:1012: Warning: The following parameters of SeqsAreAligned(mseq_t *prMSeq, bool bIsProfile) are not documented:
parameter 'bIsProfile'
/«PKGBUILDDIR»/src/clustal/seq.c:777: Warning: The following parameters of WriteAlignment(mseq_t *mseq, const char *pcAlnOutfile, int outfmt, int iWrap, bool bResno) are not documented:
parameter 'bResno'
/«PKGBUILDDIR»/src/clustal/symmatrix.c:262: Warning: The following parameters of SymMatrixPrint(symmatrix_t *symmat, char **labels, const char *path, bool bPercID) are not documented:
parameter 'bPercID'
/«PKGBUILDDIR»/src/clustal/symmatrix.c:262: Warning: The following parameters of SymMatrixPrint(symmatrix_t *symmat, char **labels, const char *path, bool bPercID) are not documented:
parameter 'bPercID'
dh_install
rm -rf debian/tmp/usr/lib/pkgconfig
rm -f debian/tmp/usr/lib/*/libclustalo.la
mv debian/tmp/usr/include debian/libclustalo-dev/usr
mv debian/tmp/usr/lib debian/libclustalo-dev/usr
mv debian/tmp/usr/bin debian/clustalo/usr
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libclustalo-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `libclustalo-dev' in `../libclustalo-dev_1.2.0-1_armhf.deb'.
dpkg-deb: building package `clustalo' in `../clustalo_1.2.0-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../clustalo_1.2.0-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build clustalo-1.2.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130718-0143
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
clustalo_1.2.0-1_armhf.changes:
───────────────────────────────
Format: 1.8
Date: Sat, 06 Jul 2013 09:07:37 +0200
Source: clustalo
Binary: clustalo libclustalo-dev libclustalo-doc
Architecture: armhf
Version: 1.2.0-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
clustalo - General purpose multiple sequence alignment program for proteins
libclustalo-dev - library to embed Clustal Omega
libclustalo-doc - API documentation
Closes: 706000
Changes:
clustalo (1.2.0-1) unstable; urgency=low
.
* New upstream release
* Add DNA/RNA support in description (Closes: #706000).
* Fortify binaries
[Andreas Tille]
- Moved DOI+PMID to References
- BibTeX conform authors
Checksums-Sha1:
e84059b4f66292187398180ac21c7957aefe09a1 280412 clustalo_1.2.0-1_armhf.deb
23356f36de2efd80f5986e10c9c7d5404b1e4315 371186 libclustalo-dev_1.2.0-1_armhf.deb
Checksums-Sha256:
bd52fb94dc3aa800d0837e4ad3b1132fe550f9eed1ac4f57adbe144b4339a9fa 280412 clustalo_1.2.0-1_armhf.deb
b0f6f34ecfdaaea768b89f1a05bcb3529dc149ce2e95b32b7c989c56c496437d 371186 libclustalo-dev_1.2.0-1_armhf.deb
Files:
880c9bbf5d2805b2d412b0150c909d2d 280412 science optional clustalo_1.2.0-1_armhf.deb
1266c8adf96e8e9e1dd6be7a3f5f40f8 371186 libdevel optional libclustalo-dev_1.2.0-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
clustalo_1.2.0-1_armhf.deb
──────────────────────────
new debian package, version 2.0.
size 280412 bytes: control archive=769 bytes.
655 bytes, 14 lines control
399 bytes, 6 lines md5sums
Package: clustalo
Version: 1.2.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 525
Depends: libargtable2-0 (>= 7), libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.4.0)
Section: science
Priority: optional
Homepage: http://www.clustal.org/omega/
Description: General purpose multiple sequence alignment program for proteins
Clustal-Omega is a general purpose multiple sequence alignment (MSA)
program for dna/rna/proteins. It produces high quality MSAs and is capable of
handling data-sets of hundreds of thousands of sequences in reasonable
time.
drwxr-xr-x root/root 0 2013-07-18 01:42 ./
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/bin/
-rwxr-xr-x root/root 522892 2013-07-18 01:42 ./usr/bin/clustalo
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/doc/clustalo/
-rw-r--r-- root/root 1178 2012-05-02 08:52 ./usr/share/doc/clustalo/copyright
-rw-r--r-- root/root 10680 2013-06-12 11:52 ./usr/share/doc/clustalo/README.gz
-rw-r--r-- root/root 355 2013-07-06 07:22 ./usr/share/doc/clustalo/changelog.Debian.gz
-rw-r--r-- root/root 744 2012-06-27 14:48 ./usr/share/doc/clustalo/changelog.gz
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/man/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/man/man1/
-rw-r--r-- root/root 1083 2013-07-18 01:42 ./usr/share/man/man1/clustalo.1.gz
libclustalo-dev_1.2.0-1_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 371186 bytes: control archive=1482 bytes.
504 bytes, 15 lines control
2409 bytes, 33 lines md5sums
Package: libclustalo-dev
Source: clustalo
Version: 1.2.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 884
Depends: libargtable2-dev, clustalo (= 1.2.0-1)
Suggests: libclustalo-doc
Section: libdevel
Priority: optional
Homepage: http://www.clustal.org/omega/
Description: library to embed Clustal Omega
This package contains headers and libraries to include
Clustal Omega in a program. It provides clustal usage
with an API.
drwxr-xr-x root/root 0 2013-07-18 01:42 ./
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/include/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/include/clustalo/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/include/clustalo/hhalign/
-rw-r--r-- root/root 2511 2013-07-18 01:42 ./usr/include/clustalo/hhalign/general.h
-rw-r--r-- root/root 832 2013-07-18 01:42 ./usr/include/clustalo/hhalign/hhfunc.h
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/include/clustalo/squid/
-rw-r--r-- root/root 1381 2013-07-18 01:42 ./usr/include/clustalo/squid/gki.h
-rw-r--r-- root/root 3473 2013-07-18 01:42 ./usr/include/clustalo/squid/gsi64.h
-rw-r--r-- root/root 13066 2013-07-18 01:42 ./usr/include/clustalo/squid/msa.h
-rw-r--r-- root/root 1264 2013-07-18 01:42 ./usr/include/clustalo/squid/rk.h
-rw-r--r-- root/root 19433 2013-07-18 01:42 ./usr/include/clustalo/squid/squid.h
-rw-r--r-- root/root 1937 2013-07-18 01:42 ./usr/include/clustalo/squid/stopwatch.h
-rw-r--r-- root/root 10390 2013-07-18 01:42 ./usr/include/clustalo/squid/sqfuncs.h
-rw-r--r-- root/root 489 2013-07-18 01:42 ./usr/include/clustalo/squid/sre_random.h
-rw-r--r-- root/root 7610 2013-07-18 01:42 ./usr/include/clustalo/squid/ssi.h
-rw-r--r-- root/root 1868 2013-07-18 01:42 ./usr/include/clustalo/squid/stockholm.h
-rw-r--r-- root/root 1434 2013-07-18 01:42 ./usr/include/clustalo/squid/vectorops.h
-rw-r--r-- root/root 333 2013-07-18 01:42 ./usr/include/clustalo/squid/version.h
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/include/clustalo/clustal/
-rw-r--r-- root/root 949 2013-07-18 01:42 ./usr/include/clustalo/clustal/hhalign_wrapper.h
-rw-r--r-- root/root 1251 2013-07-18 01:42 ./usr/include/clustalo/clustal/ktuple_pair.h
-rw-r--r-- root/root 1787 2013-07-18 01:42 ./usr/include/clustalo/clustal/log.h
-rw-r--r-- root/root 866 2013-07-18 01:42 ./usr/include/clustalo/clustal/mbed.h
-rw-r--r-- root/root 4112 2013-07-18 01:42 ./usr/include/clustalo/clustal/muscle_tree.h
-rw-r--r-- root/root 1275 2013-07-18 01:42 ./usr/include/clustalo/clustal/pair_dist.h
-rw-r--r-- root/root 1257 2013-07-18 01:42 ./usr/include/clustalo/clustal/progress.h
-rw-r--r-- root/root 3888 2013-07-18 01:42 ./usr/include/clustalo/clustal/seq.h
-rw-r--r-- root/root 2197 2013-07-18 01:42 ./usr/include/clustalo/clustal/symmatrix.h
-rw-r--r-- root/root 1066 2013-07-18 01:42 ./usr/include/clustalo/clustal/tree.h
-rw-r--r-- root/root 2308 2013-07-18 01:42 ./usr/include/clustalo/clustal/util.h
-rw-r--r-- root/root 741 2013-07-18 01:42 ./usr/include/clustalo/clustal/weights.h
-rw-r--r-- root/root 9402 2013-07-18 01:42 ./usr/include/clustalo/clustal-omega-config.h
-rw-r--r-- root/root 4379 2013-07-18 01:42 ./usr/include/clustalo/clustal-omega.h
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/lib/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 250 2013-07-18 01:42 ./usr/lib/arm-linux-gnueabihf/pkgconfig/clustalo.pc
-rw-r--r-- root/root 800156 2013-07-18 01:42 ./usr/lib/arm-linux-gnueabihf/libclustalo.a
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-07-18 01:42 ./usr/share/doc/libclustalo-dev/
-rw-r--r-- root/root 1178 2012-05-02 08:52 ./usr/share/doc/libclustalo-dev/copyright
-rw-r--r-- root/root 355 2013-07-06 07:22 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz
-rw-r--r-- root/root 744 2012-06-27 14:48 ./usr/share/doc/libclustalo-dev/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 24628
Build-Time: 466
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 378
Job: clustalo_1.2.0-1
Machine Architecture: armhf
Package: clustalo
Package-Time: 1002
Source-Version: 1.2.0-1
Space: 24628
Status: successful
Version: 1.2.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130718-0143
Build needed 00:16:42, 24628k disc space