Raspbian Package Auto-Building

Build log for centrifuge (1.0.3-8) on armhf

centrifuge → 1.0.3-8 → armhf → 2020-12-14 22:33:19 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03

+==============================================================================+
| centrifuge 1.0.3-8 (armhf)                   Mon, 14 Dec 2020 22:19:11 +0000 |
+==============================================================================+

Package: centrifuge
Version: 1.0.3-8
Source Version: 1.0.3-8
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-208acb6b-691b-4a4e-95b4-c633ed90f920' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 25s (997 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'centrifuge' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/centrifuge.git
Please use:
git clone https://salsa.debian.org/med-team/centrifuge.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 716 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main centrifuge 1.0.3-8 (dsc) [2033 B]
Get:2 http://172.17.0.1/private bullseye-staging/main centrifuge 1.0.3-8 (tar) [701 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main centrifuge 1.0.3-8 (diff) [12.4 kB]
Fetched 716 kB in 0s (3955 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/centrifuge-apKJVg/centrifuge-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/centrifuge-apKJVg' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-qhN1FX/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-qhN1FX/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-qhN1FX/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2754 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils krb5-locales libnss-nis libnss-nisplus netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12757 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish
Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish
dpkg-deb: building package 'sbuild-build-depends-centrifuge-dummy' in '/<<BUILDDIR>>/resolver-qhN1FX/apt_archive/sbuild-build-depends-centrifuge-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-centrifuge-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Sources [518 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ Packages [599 B]
Fetched 2450 B in 1s (2971 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install centrifuge build dependencies (apt-based resolver)
----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libnss-nis libnss-nisplus netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  intltool-debian jellyfish libarchive-zip-perl libbrotli1 libcroco3
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libhts3 libicu67
  libjellyfish-2.0-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
  libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4
  mailcap man-db media-types mime-support po-debconf python3 python3-distutils
  python3-lib2to3 python3-minimal python3.9 python3.9-minimal
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv
  python3.9-doc binfmt-support
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  intltool-debian jellyfish libarchive-zip-perl libbrotli1 libcroco3
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libhts3 libicu67
  libjellyfish-2.0-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
  libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4
  mailcap man-db media-types mime-support po-debconf python3 python3-distutils
  python3-lib2to3 python3-minimal python3.9 python3.9-minimal
  sbuild-build-depends-centrifuge-dummy
0 upgraded, 56 newly installed, 0 to remove and 5 not upgraded.
Need to get 25.5 MB of archives.
After this operation, 94.6 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qhN1FX/apt_archive ./ sbuild-build-depends-centrifuge-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1-1+rpi1 [789 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1-1+rpi1 [1625 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-4 [37.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1-1+rpi1 [1654 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1-1+rpi1 [461 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-4 [21.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-4 [64.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3 [188 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-5 [8288 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3 [1009 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-1 [141 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libjellyfish-2.0-2 armhf 2.3.0-8 [56.1 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf jellyfish armhf 2.3.0-8 [621 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12757 files and directories currently installed.)
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Setting up libpython3.9-minimal:armhf (3.9.1-1+rpi1) ...
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Setting up python3-minimal (3.9.0-4) ...
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Setting up autotools-dev (20180224.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.9.0-1) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libpython3.9-stdlib:armhf (3.9.1-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.0-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
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Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up python3.9 (3.9.1-1+rpi1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3 (3.9.0-4) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up jellyfish (2.3.0-8) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
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Processing triggers for libc-bin (2.31-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-4+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-5+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-4+rpi1 binutils-arm-linux-gnueabihf_2.35.1-4+rpi1 binutils-common_2.35.1-4+rpi1 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.3 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 jellyfish_2.3.0-8 krb5-locales_1.18.3-4 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-4+rpi1 libblkid1_2.36.1-2 libboost-iostreams1.71.0_1.71.0-7+b1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-5+rpi1 libc6_2.31-5+rpi1 libc6-dev_2.31-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-4+rpi1 libctf0_2.35.1-4+rpi1 libcurl3-gnutls_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.3 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libisl23_0.23-1 libjellyfish-2.0-2_2.3.0-8 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.35-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libpython3-stdlib_3.9.0-4 libpython3.9-minimal_3.9.1-1+rpi1 libpython3.9-stdlib_3.9.1-1+rpi1 libreadline8_8.1~rc3-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssh2-1_1.9.0-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.9.0-4 python3-distutils_3.8.6-1 python3-lib2to3_3.8.6-1 python3-minimal_3.9.0-4 python3.9_3.9.1-1+rpi1 python3.9-minimal_3.9.1-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc3-1 sbuild-build-depends-centrifuge-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020d-1 util-linux_2.36.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.u09Im_P3/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov  9 17:01:32 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./centrifuge_1.0.3-8.dsc
dpkg-source: info: extracting centrifuge in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking centrifuge_1.0.3.orig.tar.gz
dpkg-source: info: unpacking centrifuge_1.0.3-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_auto_ptr_usage_in_gcc-7.patch
dpkg-source: info: applying 0002-Fix-build-with-rank.patch
dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying no_msse2.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying fix_arm_build.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-208acb6b-691b-4a4e-95b4-c633ed90f920
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package centrifuge
dpkg-buildpackage: info: source version 1.0.3-8
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \
centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \
centrifuge-src.zip centrifuge-bin.zip
rm -f core.* .tmp.head
rm -rf *.dSYM
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- BITS=32 BITS_FLAG=
	make -j4 "INSTALL=install --strip-program=true" BITS=32 BITS_FLAG=
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/g++  -O3   -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
 \
-o centrifuge-build-bin centrifuge_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \
-lpthread 
/usr/bin/g++  -O3   -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now  -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
  \
-o centrifuge-class centrifuge.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \
-lpthread  
/usr/bin/g++  -O3   -funroll-loops -g3 \
-DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \
 -I . \
-o centrifuge-inspect-bin centrifuge_inspect.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \
-lpthread 
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
In file included from bt2_idx.h:44,
                 from centrifuge.cpp:34:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from centrifuge_build.cpp:27:
bt2_idx.h: In instantiation of 'void Ebwt<index_t>::buildToDisk(InorderBlockwiseSA<TStr>&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList<RefRecord>&, int) [with TStr = SString<char>; index_t = long long unsigned int; std::ostream = std::basic_ostream<char>]':
bt2_idx.h:1492:16:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3452 |                     for(size_t k = 0; k < kmer_size; k++) {
      |                                       ~~^~~~~~~~~~~
bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3641 |       for(size_t k = 0; k < kmer_size; k++) {
      |                         ~~^~~~~~~~~~~
bt2_idx.h: In instantiation of 'void Ebwt<index_t>::buildToDisk(InorderBlockwiseSA<TStr>&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList<RefRecord>&, int) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ostream = std::basic_ostream<char>]':
bt2_idx.h:1492:16:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:706:54:   required from here
bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3452 |                     for(size_t k = 0; k < kmer_size; k++) {
      |                                       ~~^~~~~~~~~~~
bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3641 |       for(size_t k = 0; k < kmer_size; k++) {
      |                         ~~^~~~~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
diff_sample.h: In instantiation of 'void DifferenceCoverSample<T>::build(int) [with TStr = SString<char>]':
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  813 |                     sanityCheckOrderedSufs(t, t.length(), sPrimeArr, sPrimeSz, v);
      |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
diff_sample.h: In instantiation of 'void DifferenceCoverSample<T>::build(int) [with TStr = S2bDnaString]':
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = S2bDnaString]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = S2bDnaString]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:706:54:   required from here
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList<unsigned int>*) [with T = SString<char>; TIndexOffU = long long unsigned int; size_t = unsigned int]':
diff_sample.h:772:30:   required from 'void DifferenceCoverSample<T>::build(int) [with TStr = SString<char>]'
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
multikey_qsort.h:661:25: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  661 |   sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
blockwise_sa.h: In instantiation of 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]':
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
blockwise_sa.h:460:15: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  460 |   mkeyQSortSuf(t, s, slen, 4,
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  461 |                this->verbose(), this->sanityCheck());
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h:460:15: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList<unsigned int>*) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
diff_sample.h:772:30:   required from 'void DifferenceCoverSample<T>::build(int) [with TStr = S2bDnaString]'
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = S2bDnaString]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = S2bDnaString]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:706:54:   required from here
multikey_qsort.h:661:25: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  661 |   sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = SString<char>; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:460:15:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const string&, EList<std::__cxx11::basic_string<char> >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:686:60:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from centrifuge.cpp:47:
classifier.h: In instantiation of 'int Classifier<index_t, local_index_t>::go(const Scoring&, const Ebwt<index_t>&, const Ebwt<index_t>&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap<index_t>&) [with index_t = long long unsigned int; local_index_t = short unsigned int]':
centrifuge.cpp:2660:94:   required from here
classifier.h:411:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  411 |                     if(i + 1 < _hitMap.size()) {
      |                        ~~~~~~^~~~~~~~~~~~~~~~
classifier.h:432:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  432 |                         if(_hitMap[i].rank + 1 >= _hitMap[i].path.size()) {
      |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
classifier.h:442:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  442 |                     uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]);
      |                                              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
classifier.h:475:63: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  475 |                         uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]);
      |                                                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
In file included from centrifuge.cpp:47:
classifier.h: In instantiation of 'void Classifier<index_t, local_index_t>::searchForwardAndReverse(index_t, const Ebwt<index_t>&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long long unsigned int; local_index_t = short unsigned int]':
classifier.h:238:13:   required from 'int Classifier<index_t, local_index_t>::go(const Scoring&, const Ebwt<index_t>&, const Ebwt<index_t>&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap<index_t>&) [with index_t = long long unsigned int; local_index_t = short unsigned int]'
centrifuge.cpp:2660:94:   required from here
classifier.h:850:50: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'const THitInt' {aka 'const long long int'} [-Wsign-compare]
  850 |                        hit.size() + rchit.size() > rp.ihits) {
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
classifier.h:647:16: warning: variable 'cur' set but not used [-Wunused-but-set-variable]
  647 |         size_t cur[2] = {0, 0} ;
      |                ^~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
In file included from centrifuge.cpp:41:
aln_sink.h: In instantiation of 'void AlnSinkSam<index_t>::appendMate(Ebwt<index_t>&, BTString&, const Read&, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable<char, 1024, 2>; TReadId = long long unsigned int; size_t = unsigned int]':
aln_sink.h:1407:9:   required from 'void AlnSinkSam<index_t>::append(BTString&, size_t, const Read*, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, bool, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable<char, 1024, 2>; size_t = unsigned int; TReadId = long long unsigned int]'
aln_sink.h:1392:15:   required from here
aln_sink.h:2302:18: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
 2302 |  for (int i=0; i < this->tab_fmt_cols_.size(); ++i) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from /usr/include/c++/10/set:60,
                 from centrifuge_inspect.cpp:24:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
                 from bt2_idx.h:34,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
/usr/include/c++/10/bits/stl_map.h: In constructor 'Ebwt<index_t>::Ebwt(const string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
In file included from /usr/include/c++/10/map:60,
                 from bt2_idx.h:34,
                 from centrifuge_build.cpp:27:
/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
 2193 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
In file included from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
In file included from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
In file included from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  491 |                this->verbose(), this->sanityCheck());
      |                                                    ^
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:491:52: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:63: note: in expansion of macro 'OFF_MASK'
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                               ^~~~~~~~
In file included from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |  if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:491:52:   required from here
multikey_qsort.h:496:40: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |  if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26,
                 from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:49: note: in expansion of macro 'OFF_MASK'
 1155 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:49: note: in expansion of macro 'OFF_MASK'
 1164 |    sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                 ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:485:56:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:10: note: in expansion of macro 'OFF_MASK'
  914 |    off = OFF_MASK;
      |          ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:29: note: in expansion of macro 'OFF_MASK'
  923 |                             OFF_MASK, begin, end);
      |                             ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:48: note: in expansion of macro 'OFF_MASK'
 1007 |   sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                ^~~~~~~~
In file included from diff_sample.cpp:20:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |      ^~
diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |      if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                ^~~~~
diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |      ^~
diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |      if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                ^~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- prefix=/usr/lib/centrifuge
	make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge
make[2]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/bin
mkdir -p /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices
install -m 0644 indices/Makefile /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices
install -d -m 0755 /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc
install -m 0644 doc/* /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc
for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \
	install -m 0755 $file /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/bin ; \
done
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/
rmdir debian/centrifuge/usr/lib/centrifuge/bin
# move documentation to correct location
mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html
mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \
   debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css  \
   debian/centrifuge/usr/share/doc/centrifuge/html
# remove useless stuff in documentation dir
rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc
find debian -name manual.inc.html | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_python3 -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-class contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin debian/centrifuge/usr/lib/centrifuge/centrifuge-class were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined
dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined
dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.3-8_armhf.deb'.
dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.3-8_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../centrifuge_1.0.3-8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-14T22:33:05Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


centrifuge_1.0.3-8_armhf.changes:
---------------------------------

Format: 1.8
Date: Mon, 09 Nov 2020 17:36:30 +0100
Source: centrifuge
Binary: centrifuge centrifuge-dbgsym
Architecture: armhf
Version: 1.0.3-8
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 centrifuge - rapid and memory-efficient system for classification of DNA seque
Closes: 973977
Changes:
 centrifuge (1.0.3-8) unstable; urgency=medium
 .
   [ Helmut Grohne ]
   * Improve cross building: Don't detect -m64 from uname.
     Closes: #973977
 .
   [ Andreas Tille ]
   * Revert the patch from 1.0.3-6 in favour of above change
Checksums-Sha1:
 d30da376b845e531e10d91caa9b7fb1aaba7042b 3354196 centrifuge-dbgsym_1.0.3-8_armhf.deb
 a85e25cf1d9af02389cdc0202f7a2b0a7d13fa05 6076 centrifuge_1.0.3-8_armhf.buildinfo
 0197095c82a319cf32f0eb6f53da386d9bb49a35 458852 centrifuge_1.0.3-8_armhf.deb
Checksums-Sha256:
 7049ab54aeeae8b031fd3354d8923ed38c66a347ac5ec90fdf2f4bf066aa00c3 3354196 centrifuge-dbgsym_1.0.3-8_armhf.deb
 70b4cdfb9f36ca026d0e491413584dacece86fa546a331fb0aa5bc1c1053f40c 6076 centrifuge_1.0.3-8_armhf.buildinfo
 5e9038531948ec33f30e97aafb1d9870539c477be4fa74ee5c51e1f5fba79945 458852 centrifuge_1.0.3-8_armhf.deb
Files:
 3f65106a82e9a65d7bad755f6d876136 3354196 debug optional centrifuge-dbgsym_1.0.3-8_armhf.deb
 c3879522da9bce4265523acc087cdcf6 6076 science optional centrifuge_1.0.3-8_armhf.buildinfo
 05688e4cd15fb9e4a3404b9870a43d8e 458852 science optional centrifuge_1.0.3-8_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


centrifuge-dbgsym_1.0.3-8_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 3354196 bytes: control archive=700 bytes.
     465 bytes,    12 lines      control              
     408 bytes,     4 lines      md5sums              
 Package: centrifuge-dbgsym
 Source: centrifuge
 Version: 1.0.3-8
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3456
 Depends: centrifuge (= 1.0.3-8)
 Section: debug
 Priority: optional
 Description: debug symbols for centrifuge
 Build-Ids: 0e474fc4fae2f5d064b4f30a5875b8aabd183cf1 8518cd591f008253db1417983878ea41aae57a74 baf10dcc33e293bfbc26664c0fb8a1ee5b1a6409

drwxr-xr-x root/root         0 2020-11-09 16:36 ./
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.build-id/0e/
-rw-r--r-- root/root    793564 2020-11-09 16:36 ./usr/lib/debug/.build-id/0e/474fc4fae2f5d064b4f30a5875b8aabd183cf1.debug
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root   1535288 2020-11-09 16:36 ./usr/lib/debug/.build-id/85/18cd591f008253db1417983878ea41aae57a74.debug
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root    991728 2020-11-09 16:36 ./usr/lib/debug/.build-id/ba/f10dcc33e293bfbc26664c0fb8a1ee5b1a6409.debug
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    202392 2020-11-09 16:36 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/centrifuge.debug
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-11-09 16:36 ./usr/share/doc/centrifuge-dbgsym -> centrifuge


centrifuge_1.0.3-8_armhf.deb
----------------------------

 new Debian package, version 2.0.
 size 458852 bytes: control archive=1784 bytes.
    1153 bytes,    21 lines      control              
    2253 bytes,    30 lines      md5sums              
 Package: centrifuge
 Version: 1.0.3-8
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1383
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 9), python3, hisat2, jellyfish
 Section: science
 Priority: optional
 Homepage: https://ccb.jhu.edu/software/centrifuge/
 Description: rapid and memory-efficient system for classification of DNA sequences
  Centrifuge is a very rapid and memory-efficient system for the
  classification of DNA sequences from microbial samples, with better
  sensitivity than and comparable accuracy to other leading systems. The
  system uses a novel indexing scheme based on the Burrows-Wheeler
  transform (BWT) and the Ferragina-Manzini (FM) index, optimized
  specifically for the metagenomic classification problem. Centrifuge
  requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
  genomes) yet provides very fast classification speed, allowing it to
  process a typical DNA sequencing run within an hour. Together these
  advances enable timely and accurate analysis of large metagenomics data
  sets on conventional desktop computers.

drwxr-xr-x root/root         0 2020-11-09 16:36 ./
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/bin/
-rwxr-xr-x root/root       312 2020-11-09 16:36 ./usr/bin/centrifuge
lrwxrwxrwx root/root         0 2020-11-09 16:36 ./usr/bin/centrifuge-build -> centrifuge
lrwxrwxrwx root/root         0 2020-11-09 16:36 ./usr/bin/centrifuge-compress -> centrifuge
lrwxrwxrwx root/root         0 2020-11-09 16:36 ./usr/bin/centrifuge-download -> centrifuge
lrwxrwxrwx root/root         0 2020-11-09 16:36 ./usr/bin/centrifuge-inspect -> centrifuge
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/centrifuge/
-rwxr-xr-x root/root     19883 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge
-rwxr-xr-x root/root     12126 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl
-rwxr-xr-x root/root       407 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl
-rwxr-xr-x root/root      1007 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-RemoveN.pl
-rwxr-xr-x root/root      2312 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-build
-rwxr-xr-x root/root    385660 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-build-bin
-rwxr-xr-x root/root    508648 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-class
-rwxr-xr-x root/root     13305 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-compress.pl
-rwxr-xr-x root/root     11670 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-download
-rwxr-xr-x root/root      1868 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-inspect
-rwxr-xr-x root/root    296708 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-inspect-bin
-rwxr-xr-x root/root      5231 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-kreport
-rwxr-xr-x root/root      3214 2020-11-09 16:36 ./usr/lib/centrifuge/centrifuge-sort-nt.pl
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/centrifuge/share/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/centrifuge/share/centrifuge/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/lib/centrifuge/share/centrifuge/indices/
-rw-r--r-- root/root     12887 2020-11-09 16:36 ./usr/lib/centrifuge/share/centrifuge/indices/Makefile
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/doc/centrifuge/
-rw-r--r-- root/root      1133 2020-11-09 16:36 ./usr/share/doc/centrifuge/changelog.Debian.gz
-rw-r--r-- root/root      1054 2020-11-09 16:36 ./usr/share/doc/centrifuge/copyright
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/
-rw-r--r-- root/root      1234 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/add.css
-rw-r--r-- root/root      1158 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/faq.shtml
-rw-r--r-- root/root       423 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/footer.inc.html
-rw-r--r-- root/root      2388 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/index.shtml.gz
-rw-r--r-- root/root     84288 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/manual.html
-rw-r--r-- root/root      1068 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/manual.shtml
-rw-r--r-- root/root      1348 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/sidebar.inc.shtml.gz
-rw-r--r-- root/root      7942 2020-11-09 16:36 ./usr/share/doc/centrifuge/html/style.css
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/man/
drwxr-xr-x root/root         0 2020-11-09 16:36 ./usr/share/man/man1/
-rw-r--r-- root/root       440 2020-11-09 16:36 ./usr/share/man/man1/centrifuge-build.1.gz
-rw-r--r-- root/root       404 2020-11-09 16:36 ./usr/share/man/man1/centrifuge-compress.1.gz
-rw-r--r-- root/root       847 2020-11-09 16:36 ./usr/share/man/man1/centrifuge-download.1.gz
-rw-r--r-- root/root       422 2020-11-09 16:36 ./usr/share/man/man1/centrifuge-inspect.1.gz
-rw-r--r-- root/root       398 2020-11-09 16:36 ./usr/share/man/man1/centrifuge.1.gz


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 33992
Build-Time: 485
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 301
Job: centrifuge_1.0.3-8
Machine Architecture: armhf
Package: centrifuge
Package-Time: 834
Source-Version: 1.0.3-8
Space: 33992
Status: successful
Version: 1.0.3-8
--------------------------------------------------------------------------------
Finished at 2020-12-14T22:33:05Z
Build needed 00:13:54, 33992k disc space