Raspbian Package Auto-Building

Build log for centrifuge (1.0.3-11+b1) on armhf

centrifuge → 1.0.3-11+b1 → armhf → 2022-10-28 10:41:48 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| centrifuge 1.0.3-11+b1 (armhf)               Fri, 28 Oct 2022 10:23:00 +0000 |
+==============================================================================+

Package: centrifuge
Version: 1.0.3-11+b1
Source Version: 1.0.3-11
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-362b8c3f-8674-4897-8509-82722bd91f2e' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 28s (971 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'centrifuge' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/centrifuge.git
Please use:
git clone https://salsa.debian.org/med-team/centrifuge.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 719 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main centrifuge 1.0.3-11 (dsc) [2037 B]
Get:2 http://172.17.4.1/private bookworm-staging/main centrifuge 1.0.3-11 (tar) [701 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main centrifuge 1.0.3-11 (diff) [15.2 kB]
Fetched 719 kB in 0s (3603 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/centrifuge-46aK7Z/centrifuge-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/centrifuge-46aK7Z' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-phHIWx/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-phHIWx/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-phHIWx/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2748 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13104 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish
Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish
dpkg-deb: building package 'sbuild-build-depends-centrifuge-dummy' in '/<<BUILDDIR>>/resolver-phHIWx/apt_archive/sbuild-build-depends-centrifuge-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-centrifuge-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Sources [518 B]
Get:5 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ Packages [595 B]
Fetched 2446 B in 1s (2962 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install centrifuge build dependencies (apt-based resolver)
----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian jellyfish libarchive-zip-perl
  libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71
  libjellyfish-2.0-2 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14
  libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal
  libpython3.10-stdlib librtmp1 libssh2-1 libsub-override-perl libtool
  libuchardet0 libxml2 m4 man-db media-types po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.10
  python3.10-minimal
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
  python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
  groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv
  python3.10-venv python3.10-doc binfmt-support
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl publicsuffix
  libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian jellyfish libarchive-zip-perl
  libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71
  libjellyfish-2.0-2 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14
  libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal
  libpython3.10-stdlib librtmp1 libssh2-1 libsub-override-perl libtool
  libuchardet0 libxml2 m4 man-db media-types po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.10
  python3.10-minimal sbuild-build-depends-centrifuge-dummy
0 upgraded, 54 newly installed, 0 to remove and 27 not upgraded.
Need to get 24.9 MB of archives.
After this operation, 98.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-phHIWx/apt_archive ./ sbuild-build-depends-centrifuge-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.7-2 [769 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.9-1 [83.3 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.7-2 [1477 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.7-2 [1597 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.7-2 [502 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10 [79.8 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10 [940 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.7-1 [79.9 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.7-1 [141 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libjellyfish-2.0-2 armhf 2.3.0-15 [57.0 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf jellyfish armhf 2.3.0-15 [623 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 24.9 MB in 2s (10.5 MB/s)
Selecting previously unselected package libpython3.10-minimal:armhf.
(Reading database ... 13104 files and directories currently installed.)
Preparing to unpack .../libpython3.10-minimal_3.10.7-2_armhf.deb ...
Unpacking libpython3.10-minimal:armhf (3.10.7-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.4.9-1_armhf.deb ...
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Preparing to unpack .../python3.10-minimal_3.10.7-2_armhf.deb ...
Unpacking python3.10-minimal (3.10.7-2) ...
Setting up libpython3.10-minimal:armhf (3.10.7-2) ...
Setting up libexpat1:armhf (2.4.9-1) ...
Setting up python3.10-minimal (3.10.7-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13407 files and directories currently installed.)
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Setting up python3-minimal (3.10.6-1) ...
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Setting up autotools-dev (20220109.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up autopoint (0.21-9) ...
Setting up autoconf (2.71-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-9) ...
Setting up libtool (2.4.7-4) ...
Setting up libcurl3-gnutls:armhf (7.85.0-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libpython3.10-stdlib:armhf (3.10.7-2) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up libpython3-stdlib:armhf (3.10.6-1) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up python3.10 (3.10.7-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.10.6-1) ...
Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up jellyfish (2.3.0-15) ...
Setting up python3-lib2to3 (3.10.7-1) ...
Setting up python3-distutils (3.10.7-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up debhelper (13.10) ...
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Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 jellyfish_2.3.0-15 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblkid1_2.38.1-1.1 libboost-iostreams1.74.0_1.74.0-17 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl3-gnutls_7.85.0-1 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.4.9-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjellyfish-2.0-2_2.3.0-15 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-2+rpi1 libldap-common_2.5.13+dfsg-2+rpi1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.7-2 libpython3.10-stdlib_3.10.7-2 libreadline8_8.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsigc++-2.0-0v5_2.10.8-1 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-1.1 libxapian30_1.4.21-1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-distutils_3.10.7-1 python3-lib2to3_3.10.7-1 python3-minimal_3.10.6-1 python3.10_3.10.7-2 python3.10-minimal_3.10.7-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-centrifuge-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BTGem94Q/trustedkeys.kbx': General error
gpgv: Signature made Mon Oct 10 05:56:45 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./centrifuge_1.0.3-11.dsc
dpkg-source: info: extracting centrifuge in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking centrifuge_1.0.3.orig.tar.gz
dpkg-source: info: unpacking centrifuge_1.0.3-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Makefile-Use-consistent-build-time-and-build-host.patch
dpkg-source: info: applying fix_auto_ptr_usage_in_gcc-7.patch
dpkg-source: info: applying 0002-Fix-build-with-rank.patch
dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying no_msse2.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying fix_arm_build.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.0.3-11+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-362b8c3f-8674-4897-8509-82722bd91f2e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package centrifuge
dpkg-buildpackage: info: source version 1.0.3-11+b1
dpkg-buildpackage: info: source distribution bookworm-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \
centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \
centrifuge-src.zip centrifuge-bin.zip
rm -f core.* .tmp.head
rm -rf *.dSYM
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- BITS=32 BITS_FLAG=
	make -j4 "INSTALL=install --strip-program=true" BITS=32 BITS_FLAG=
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/g++  -O3   -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
 \
-o centrifuge-build-bin centrifuge_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \
-lpthread 
/usr/bin/g++  -O3   -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now  -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
  \
-o centrifuge-class centrifuge.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \
-lpthread  
/usr/bin/g++  -O3   -funroll-loops -g3 \
-DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
-fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++  -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -DBOWTIE_MM  -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \
 -I . \
-o centrifuge-inspect-bin centrifuge_inspect.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \
-lpthread 
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge.cpp:34:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from centrifuge_build.cpp:27:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from hier_idx.h:24,
                 from centrifuge_inspect.cpp:28:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
bt2_idx.h: In instantiation of 'void Ebwt<index_t>::buildToDisk(InorderBlockwiseSA<TStr>&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList<RefRecord>&, int) [with TStr = SString<char>; index_t = long long unsigned int; std::ostream = std::basic_ostream<char>]':
bt2_idx.h:1492:16:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3452 |                     for(size_t k = 0; k < kmer_size; k++) {
      |                                       ~~^~~~~~~~~~~
bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3641 |       for(size_t k = 0; k < kmer_size; k++) {
      |                         ~~^~~~~~~~~~~
bt2_idx.h: In instantiation of 'void Ebwt<index_t>::buildToDisk(InorderBlockwiseSA<TStr>&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList<RefRecord>&, int) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ostream = std::basic_ostream<char>]':
bt2_idx.h:1492:16:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:697:25:   required from here
bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3452 |                     for(size_t k = 0; k < kmer_size; k++) {
      |                                       ~~^~~~~~~~~~~
bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 3641 |       for(size_t k = 0; k < kmer_size; k++) {
      |                         ~~^~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
diff_sample.h: In instantiation of 'void DifferenceCoverSample<T>::build(int) [with TStr = SString<char>]':
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  813 |                     sanityCheckOrderedSufs(t, t.length(), sPrimeArr, sPrimeSz, v);
      |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from centrifuge.cpp:47:
classifier.h: In instantiation of 'int Classifier<index_t, local_index_t>::go(const Scoring&, const Ebwt<index_t>&, const Ebwt<index_t>&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap<index_t>&) [with index_t = long long unsigned int; local_index_t = short unsigned int]':
centrifuge.cpp:2660:34:   required from here
classifier.h:411:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  411 |                     if(i + 1 < _hitMap.size()) {
      |                        ~~~~~~^~~~~~~~~~~~~~~~
classifier.h:432:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  432 |                         if(_hitMap[i].rank + 1 >= _hitMap[i].path.size()) {
      |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
classifier.h:442:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  442 |                     uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]);
      |                                              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
classifier.h:475:63: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
  475 |                         uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]);
      |                                                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
diff_sample.h: In instantiation of 'void DifferenceCoverSample<T>::build(int) [with TStr = S2bDnaString]':
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = S2bDnaString]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = S2bDnaString]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:697:25:   required from here
diff_sample.h:813:43: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList<unsigned int>*) [with T = SString<char>; TIndexOffU = long long unsigned int; size_t = unsigned int]':
diff_sample.h:772:30:   required from 'void DifferenceCoverSample<T>::build(int) [with TStr = SString<char>]'
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
multikey_qsort.h:661:39: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  661 |                 sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In instantiation of 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]':
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
blockwise_sa.h:460:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  460 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  461 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h:460:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList<unsigned int>*) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
diff_sample.h:772:30:   required from 'void DifferenceCoverSample<T>::build(int) [with TStr = S2bDnaString]'
blockwise_sa.h:383:20:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = S2bDnaString]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = S2bDnaString]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:697:25:   required from here
multikey_qsort.h:661:39: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  661 |                 sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = SString<char>; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:460:15:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   required from 'void KarkkainenBlockwiseSA<TStr>::buildSamples() [with TStr = SString<char>]'
blockwise_sa.h:388:4:   required from 'void KarkkainenBlockwiseSA<TStr>::build() [with TStr = SString<char>]'
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = SString<char>; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:454:19:   required from 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = SString<char>]'
blockwise_sa.h:607:9:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
blockwise_sa.h:362:4:   required from 'void KarkkainenBlockwiseSA<TStr>::reset() [with TStr = SString<char>]'
blockwise_sa.h:215:29:   required from 'KarkkainenBlockwiseSA<TStr>::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString<char>; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>; std::ostream = std::basic_ostream<char>]'
bt2_idx.h:1488:33:   required from 'void Ebwt<index_t>::initFromVector(TStr&, EList<FileBuf*>&, EList<RefRecord>&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString<char>; index_t = long long unsigned int; std::ofstream = std::basic_ofstream<char>; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
bt2_idx.h:881:23:   required from 'Ebwt<index_t>::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList<FileBuf*>&, EList<RefRecord>&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString<char>; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string<char>; uint32_t = unsigned int]'
centrifuge_build.cpp:472:19:   required from 'void driver(const std::string&, EList<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString<char>; std::string = std::__cxx11::basic_string<char>]'
centrifuge_build.cpp:677:28:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
classifier.h: In instantiation of 'void Classifier<index_t, local_index_t>::searchForwardAndReverse(index_t, const Ebwt<index_t>&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long long unsigned int; local_index_t = short unsigned int]':
classifier.h:238:13:   required from 'int Classifier<index_t, local_index_t>::go(const Scoring&, const Ebwt<index_t>&, const Ebwt<index_t>&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap<index_t>&) [with index_t = long long unsigned int; local_index_t = short unsigned int]'
centrifuge.cpp:2660:34:   required from here
classifier.h:850:50: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'const THitInt' {aka 'const long long int'} [-Wsign-compare]
  850 |                        hit.size() + rchit.size() > rp.ihits) {
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
classifier.h:647:16: warning: variable 'cur' set but not used [-Wunused-but-set-variable]
  647 |         size_t cur[2] = {0, 0} ;
      |                ^~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
In file included from centrifuge.cpp:41:
aln_sink.h: In instantiation of 'void AlnSinkSam<index_t>::appendMate(Ebwt<index_t>&, BTString&, const Read&, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable<char, 1024, 2>; TReadId = long long unsigned int; size_t = unsigned int]':
aln_sink.h:1407:9:   required from 'void AlnSinkSam<index_t>::append(BTString&, size_t, const Read*, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, bool, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable<char, 1024, 2>; size_t = unsigned int; TReadId = long long unsigned int]'
aln_sink.h:1392:15:   required from here
aln_sink.h:2302:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
 2302 |         for (int i=0; i < this->tab_fmt_cols_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
In file included from /usr/include/c++/12/set:60,
                 from centrifuge_inspect.cpp:24:
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61,
                 from bt2_idx.h:34:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]',
    inlined from 'Ebwt<index_t>::Ebwt(const std::string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]' at bt2_idx.h:702:28:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]',
    inlined from 'Ebwt<index_t>::Ebwt(const std::string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]' at bt2_idx.h:743:36:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
In file included from blockwise_sa.h:29,
                 from bt2_idx.h:44,
                 from bt2_idx.cpp:25:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
blockwise_sa.h: In function 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  490 |                 mkeyQSortSuf(t, s, slen, 4,
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  491 |                              this->verbose(), this->sanityCheck());
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::qsort(EList<long long unsigned int>&) [with TStr = S2bDnaString]':
blockwise_sa.h:490:29: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
In file included from ds.h:32,
                 from sequence_io.h:28,
                 from multikey_qsort.h:24,
                 from diff_sample.h:26:
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:70: note: in expansion of macro 'OFF_MASK'
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                                                                      ^~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  764 |         if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h:764:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
multikey_qsort.h: In instantiation of 'void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]':
blockwise_sa.h:490:15:   required from here
multikey_qsort.h:496:47: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
  496 |         if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto);
      |                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
multikey_qsort.h: In instantiation of 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]':
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1155:70: note: in expansion of macro 'OFF_MASK'
 1155 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1164:70: note: in expansion of macro 'OFF_MASK'
 1164 |                         sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                                      ^~~~~~~~
multikey_qsort.h: In instantiation of 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1066:40: note: in expansion of macro 'OFF_MASK'
 1066 |                                        OFF_MASK, begin, end);
      |                                        ^~~~~~~~
multikey_qsort.h: In instantiation of 'void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]':
multikey_qsort.h:1062:33:   required from 'void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]'
multikey_qsort.h:1161:20:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
multikey_qsort.h:763:18:   required from 'void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample<T1>&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]'
blockwise_sa.h:484:19:   required from here
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:914:31: note: in expansion of macro 'OFF_MASK'
  914 |                         off = OFF_MASK;
      |                               ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:923:64: note: in expansion of macro 'OFF_MASK'
  923 |                                                                OFF_MASK, begin, end);
      |                                                                ^~~~~~~~
btypes.h:25:18: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '18446744073709551615' to '4294967295' [-Woverflow]
   25 | #define OFF_MASK 0xffffffffffffffff
      |                  ^~~~~~~~~~~~~~~~~~
multikey_qsort.h:1007:62: note: in expansion of macro 'OFF_MASK'
 1007 |                 sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end);
      |                                                              ^~~~~~~~
In file included from diff_sample.cpp:20:
diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)':
diff_sample.h:175:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                         ^~
diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  175 |                                         if(!diffs[d1]) diffCnt++; diffs[d1] = true;
      |                                                                   ^~~~~
diff_sample.h:176:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                         ^~
diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  176 |                                         if(!diffs[d2]) diffCnt++; diffs[d2] = true;
      |                                                                   ^~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- prefix=/usr/lib/centrifuge
	make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge
make[2]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/bin
mkdir -p /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices
install -m 0644 indices/Makefile /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices
install -d -m 0755 /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc
install -m 0644 doc/* /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc
for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \
	install -m 0755 $file /<<PKGBUILDDIR>>/debian/centrifuge/usr/lib/centrifuge/bin ; \
done
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/
rmdir debian/centrifuge/usr/lib/centrifuge/bin
# move documentation to correct location
mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html
mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \
   debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css  \
   debian/centrifuge/usr/share/doc/centrifuge/html
# remove useless stuff in documentation dir
rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc
find debian -name manual.inc.html | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_python3 -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-class contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/centrifuge/usr/lib/centrifuge/centrifuge-class debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.3-11+b1_armhf.deb'.
dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.3-11+b1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../centrifuge_1.0.3-11+b1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../centrifuge_1.0.3-11+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-28T10:41:41Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


centrifuge_1.0.3-11+b1_armhf.changes:
-------------------------------------

Format: 1.8
Date: Mon, 10 Oct 2022 07:52:41 +0200
Source: centrifuge (1.0.3-11)
Binary: centrifuge centrifuge-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.0.3-11+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 centrifuge - rapid and memory-efficient system for classification of DNA seque
Changes:
 centrifuge (1.0.3-11+b1) bookworm-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 3e0e524b01d41caef50d76f9dccad9f046dec91e 3420388 centrifuge-dbgsym_1.0.3-11+b1_armhf.deb
 b28c784b4b99abef880543573f5bd209d9658d0e 6387 centrifuge_1.0.3-11+b1_armhf.buildinfo
 b434792bcf582a1813151dc91466769d7ce2b3c8 462776 centrifuge_1.0.3-11+b1_armhf.deb
Checksums-Sha256:
 afafd5e52c6bdf85a74f6f5aec24ecde024b1b8eb153f022bc6686fcaa14a7cc 3420388 centrifuge-dbgsym_1.0.3-11+b1_armhf.deb
 75c2da95703840e7d236604502fa31b9a2cd0afe00b8d193068e52e7a5b33f21 6387 centrifuge_1.0.3-11+b1_armhf.buildinfo
 63b45afabd115caeb292e27dc67b2abc7663fcf0ca6b750afb205250f420b8b2 462776 centrifuge_1.0.3-11+b1_armhf.deb
Files:
 a87c8f189c2b1088e671bc1692e09f2c 3420388 debug optional centrifuge-dbgsym_1.0.3-11+b1_armhf.deb
 c2065d015047254d78f0510384ec79b7 6387 science optional centrifuge_1.0.3-11+b1_armhf.buildinfo
 e8fd0c7530bb0f7bf3bfeb567089c740 462776 science optional centrifuge_1.0.3-11+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


centrifuge-dbgsym_1.0.3-11+b1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 3420388 bytes: control archive=704 bytes.
     484 bytes,    12 lines      control              
     408 bytes,     4 lines      md5sums              
 Package: centrifuge-dbgsym
 Source: centrifuge (1.0.3-11)
 Version: 1.0.3-11+b1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3503
 Depends: centrifuge (= 1.0.3-11+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for centrifuge
 Build-Ids: 85d732a91685f56260b8777de16f7a896d5c3a89 9515783c5809b2ffad377debd39ecc9c94c1a679 9ed98b5c7e90790e5bb696c4b0ff997555979fa7

drwxr-xr-x root/root         0 2022-10-10 05:52 ./
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    818484 2022-10-10 05:52 ./usr/lib/debug/.build-id/85/d732a91685f56260b8777de16f7a896d5c3a89.debug
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.build-id/95/
-rw-r--r-- root/root   1549580 2022-10-10 05:52 ./usr/lib/debug/.build-id/95/15783c5809b2ffad377debd39ecc9c94c1a679.debug
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root    967140 2022-10-10 05:52 ./usr/lib/debug/.build-id/9e/d98b5c7e90790e5bb696c4b0ff997555979fa7.debug
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    235216 2022-10-10 05:52 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/centrifuge.debug
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-10-10 05:52 ./usr/share/doc/centrifuge-dbgsym -> centrifuge


centrifuge_1.0.3-11+b1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 462776 bytes: control archive=1832 bytes.
    1201 bytes,    22 lines      control              
    2338 bytes,    31 lines      md5sums              
 Package: centrifuge
 Source: centrifuge (1.0.3-11)
 Version: 1.0.3-11+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1462
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), python3:any, python3, hisat2, jellyfish
 Section: science
 Priority: optional
 Homepage: https://ccb.jhu.edu/software/centrifuge/
 Description: rapid and memory-efficient system for classification of DNA sequences
  Centrifuge is a very rapid and memory-efficient system for the
  classification of DNA sequences from microbial samples, with better
  sensitivity than and comparable accuracy to other leading systems. The
  system uses a novel indexing scheme based on the Burrows-Wheeler
  transform (BWT) and the Ferragina-Manzini (FM) index, optimized
  specifically for the metagenomic classification problem. Centrifuge
  requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
  genomes) yet provides very fast classification speed, allowing it to
  process a typical DNA sequencing run within an hour. Together these
  advances enable timely and accurate analysis of large metagenomics data
  sets on conventional desktop computers.

drwxr-xr-x root/root         0 2022-10-10 05:52 ./
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/bin/
-rwxr-xr-x root/root       312 2022-10-10 05:52 ./usr/bin/centrifuge
lrwxrwxrwx root/root         0 2022-10-10 05:52 ./usr/bin/centrifuge-build -> centrifuge
lrwxrwxrwx root/root         0 2022-10-10 05:52 ./usr/bin/centrifuge-compress -> centrifuge
lrwxrwxrwx root/root         0 2022-10-10 05:52 ./usr/bin/centrifuge-download -> centrifuge
lrwxrwxrwx root/root         0 2022-10-10 05:52 ./usr/bin/centrifuge-inspect -> centrifuge
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/centrifuge/
-rwxr-xr-x root/root     19883 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge
-rwxr-xr-x root/root     12126 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl
-rwxr-xr-x root/root       407 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl
-rwxr-xr-x root/root      1007 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-RemoveN.pl
-rwxr-xr-x root/root      2312 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-build
-rwxr-xr-x root/root    402044 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-build-bin
-rwxr-xr-x root/root    533224 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-class
-rwxr-xr-x root/root     13305 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-compress.pl
-rwxr-xr-x root/root     11670 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-download
-rwxr-xr-x root/root      1868 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-inspect
-rwxr-xr-x root/root    333572 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-inspect-bin
-rwxr-xr-x root/root      5231 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-kreport
-rwxr-xr-x root/root      3214 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-sort-nt.pl
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/centrifuge/share/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/indices/
-rw-r--r-- root/root     12887 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/indices/Makefile
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/doc/centrifuge/
-rw-r--r-- root/root       223 2022-10-10 05:52 ./usr/share/doc/centrifuge/changelog.Debian.armhf.gz
-rw-r--r-- root/root      1025 2022-10-10 05:52 ./usr/share/doc/centrifuge/changelog.Debian.gz
-rw-r--r-- root/root      1054 2022-10-10 05:52 ./usr/share/doc/centrifuge/copyright
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/
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-rw-r--r-- root/root     84288 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/manual.html
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drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/man/
drwxr-xr-x root/root         0 2022-10-10 05:52 ./usr/share/man/man1/
-rw-r--r-- root/root      1204 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-build.1.gz
-rw-r--r-- root/root       379 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-compress.1.gz
-rw-r--r-- root/root       854 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-download.1.gz
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 33112
Build-Time: 633
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 434
Job: centrifuge_1.0.3-11
Machine Architecture: armhf
Package: centrifuge
Package-Time: 1121
Source-Version: 1.0.3-11
Space: 33112
Status: successful
Version: 1.0.3-11+b1
--------------------------------------------------------------------------------
Finished at 2022-10-28T10:41:41Z
Build needed 00:18:41, 33112k disc space