bitshuffle →
0.3.5-4 →
armhf → 2022-02-13 12:59:48
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| bitshuffle 0.3.5-4 (armhf) Sun, 13 Feb 2022 12:48:54 +0000 |
+==============================================================================+
Package: bitshuffle
Version: 0.3.5-4
Source Version: 0.3.5-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-737efc80-a18b-4b21-b4eb-c0e427b6d579' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.8 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 10s (2725 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/alteholz/bitshuffle.git
Please use:
git clone https://salsa.debian.org/alteholz/bitshuffle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 122 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main bitshuffle 0.3.5-4 (dsc) [2214 B]
Get:2 http://172.17.4.1/private bookworm-staging/main bitshuffle 0.3.5-4 (tar) [112 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main bitshuffle 0.3.5-4 (diff) [7080 B]
Fetched 122 kB in 0s (2901 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bitshuffle-8jk3DY/bitshuffle-0.3.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitshuffle-8jk3DY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Sk18mB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Sk18mB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Sk18mB/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (9414 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (61.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14442 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-serial-dev, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py-mpi, quilt, cmake, pkg-config, cython3, liblzf-dev, liblz4-dev
Filtered Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-serial-dev, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py-mpi, quilt, cmake, pkg-config, cython3, liblzf-dev, liblz4-dev
dpkg-deb: building package 'sbuild-build-depends-bitshuffle-dummy' in '/<<BUILDDIR>>/resolver-Sk18mB/apt_archive/sbuild-build-depends-bitshuffle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bitshuffle-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Sources [592 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ Packages [670 B]
Fetched 2595 B in 0s (11.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bitshuffle build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
cpp-11 cython3 debhelper dh-autoreconf dh-elpa-helper dh-exec dh-python
dh-strip-nondeterminism diffstat dwz ed emacsen-common file g++-11 gcc-11
gcc-11-base gettext gettext-base gfortran-11 groff-base hdf5-helpers
ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libarchive13 libasan6 libatomic1 libblas3 libbrotli1 libbsd0 libcbor0.8
libcc1-0 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl
libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev
libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
libexpat1 libexpat1-dev libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgcc-11-dev libgcc-s1 libgfortran-11-dev
libgfortran5 libglib2.0-0 libgomp1 libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libhdf5-openmpi-103-1 libhdf5-openmpi-cpp-103-1
libhdf5-openmpi-dev libhdf5-openmpi-fortran-102 libhdf5-openmpi-hl-100
libhdf5-openmpi-hl-cpp-100 libhdf5-openmpi-hl-fortran-100 libhwloc-dev
libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 libltdl-dev
libltdl7 liblz4-dev liblzf-dev liblzf1 libmagic-mgc libmagic1 libmd0
libmpdec3 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libprocps8
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librdmacm1
librhash0 librtmp1 libsigsegv2 libssh2-1 libssl-dev libstdc++-11-dev
libstdc++6 libsub-override-perl libsz2 libtool libubsan1 libuchardet0 libuv1
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0
m4 man-db media-types mpi-default-bin ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client pkg-config po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-h5py-mpi
python3-h5py-serial python3-lib2to3 python3-minimal python3-mpi4py
python3-numpy python3-pkg-resources python3-setuptools python3.9
python3.9-dev python3.9-minimal quilt zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build
cmake-format gcc-11-locales cython-doc dh-make flit python3-build
python3-tomli python3-installer gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-11-doc libcoarrays-dev groff lrzip libcurl4-doc
libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc
libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils libssl-doc
libstdc++-11-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd
gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python3-h5py
python-h5py-doc gfortran python-numpy-doc python3-pytest
python-setuptools-doc python3.9-venv python3.9-doc binfmt-support
default-mta | mail-transport-agent graphviz procmail
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common libgpm2
libcoarrays-openmpi-dev publicsuffix xauth libmail-sendmail-perl psmisc less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
cython3 debhelper dh-autoreconf dh-elpa-helper dh-exec dh-python
dh-strip-nondeterminism diffstat dwz ed emacsen-common file gettext
gettext-base gfortran-11 groff-base hdf5-helpers ibverbs-providers
intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3
libbrotli1 libbsd0 libcbor0.8 libcurl3-gnutls libcurl4 libcurl4-openssl-dev
libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgfortran-11-dev libgfortran5
libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
libhdf5-openmpi-103-1 libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-dev
libhdf5-openmpi-fortran-102 libhdf5-openmpi-hl-100
libhdf5-openmpi-hl-cpp-100 libhdf5-openmpi-hl-fortran-100 libhwloc-dev
libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 libltdl-dev
libltdl7 liblz4-dev liblzf-dev liblzf1 libmagic-mgc libmagic1 libmd0
libmpdec3 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libprocps8
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librdmacm1
librhash0 librtmp1 libsigsegv2 libssh2-1 libssl-dev libsub-override-perl
libsz2 libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db media-types mpi-default-bin
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py-mpi python3-h5py-serial python3-lib2to3
python3-minimal python3-mpi4py python3-numpy python3-pkg-resources
python3-setuptools python3.9 python3.9-dev python3.9-minimal quilt
sbuild-build-depends-bitshuffle-dummy zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-11-dev
libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6 libubsan1
13 upgraded, 164 newly installed, 0 to remove and 6 not upgraded.
Need to get 111 MB of archives.
After this operation, 299 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Sk18mB/apt_archive ./ sbuild-build-depends-bitshuffle-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-1+rpi1 [794 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-16+rpi1 [37.7 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-16+rpi1 [207 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-16+rpi1 [36.2 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-16+rpi1 [87.9 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-16+rpi1 [8180 B]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-16+rpi1 [1946 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-16+rpi1 [798 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-16+rpi1 [7914 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-16+rpi1 [1963 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-16+rpi1 [696 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-16+rpi1 [14.0 MB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-16+rpi1 [7074 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-16+rpi1 [466 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.4-1 [82.4 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-1+rpi1 [1595 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1+b4 [38.7 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf media-types all 5.0.0 [32.5 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-1+rpi1 [1611 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.10-1+rpi1 [488 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1+b4 [21.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1+b4 [38.3 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.0-2 [1356 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-2 [79.6 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-6 [60.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-6 [476 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libcbor0.8 armhf 0.8.0-2 [22.8 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfido2-1 armhf 1.10.0-1 [65.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf openssh-client armhf 1:8.7p1-4 [882 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.5.2-1 [301 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.81.0-1 [318 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-3 [66.6 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.43.0-1 [122 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.10 [11.3 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.22.1-1 [1905 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.22.1-1+b1 [3478 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.24-2 [1234 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf dh-exec armhf 0.23.4 [25.7 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220119 [110 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf diffstat armhf 1.64-1 [32.6 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf ed armhf 1.17-1 [55.0 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-16+rpi1 [235 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-16+rpi1 [280 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-16+rpi1 [7578 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-4+rpi1 [42.9 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libibverbs1 armhf 39.0-1 [53.6 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf ibverbs-providers armhf 39.0-1 [28.6 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.81.0-1 [394 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [167 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [100 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.7 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libevent-dev armhf 2.1.12-stable-1 [281 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.4-1 [135 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf librdmacm1 armhf 39.0-1 [60.4 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-3 [310 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.3-1 [1209 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-4+rpi1 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-4+rpi1 [97.0 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-4+rpi1 [53.9 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-4+rpi1 [40.1 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 1.1.1m-1 [1576 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-4+rpi1 [2211 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.7.0-2 [127 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-3 [51.2 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.103.01-1 [26.1 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.7.0-2 [20.3 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc6-1 [481 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-5+rpi1+b1 [1776 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-103-1 armhf 1.10.7+repack-4+rpi1 [1293 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-cpp-103-1 armhf 1.10.7+repack-4+rpi1 [133 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-fortran-102 armhf 1.10.7+repack-4+rpi1 [97.2 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-hl-fortran-100 armhf 1.10.7+repack-4+rpi1 [53.7 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-hl-cpp-100 armhf 1.10.7+repack-4+rpi1 [40.1 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf openmpi-common all 4.1.2~rc1-5+rpi1 [180 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libibverbs-dev armhf 39.0-1 [188 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libnuma1 armhf 2.0.14-3 [21.8 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libnuma-dev armhf 2.0.14-3 [34.7 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libltdl-dev armhf 2.4.6-15 [159 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-dev armhf 2.7.0-2 [199 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libpmix-dev armhf 4.1.1~rc6-1 [645 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.0+dfsg-1 [250 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf openmpi-bin armhf 4.1.2~rc1-5+rpi1+b1 [209 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi-dev armhf 4.1.2~rc1-5+rpi1+b1 [937 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-openmpi-dev armhf 1.10.7+repack-4+rpi1 [2264 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf liblz4-dev armhf 1.9.3-2 [71.0 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf liblzf-dev armhf 3.6-3 [18.0 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.10-1+rpi1 [1419 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.10-1+rpi1 [3015 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.7-1+b4 [22.1 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.7-1+b4 [1068 B]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf mpi-default-bin armhf 1.14 [4752 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1+b4 [1060 B]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.10-1+rpi1 [501 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.7-1+b4 [25.3 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.7-1+b4 [1076 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-mpi4py armhf 3.1.3-1+rpi1 [388 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.6.0-2 [688 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-mpi armhf 3.6.0-2 [693 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf quilt all 0.66-2.1 [319 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libgcc-s1:armhf (11.2.0-16+rpi1) ...
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Unpacking g++-11 (11.2.0-16+rpi1) over (11.2.0-14+rpi1) ...
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Unpacking libstdc++-11-dev:armhf (11.2.0-16+rpi1) over (11.2.0-14+rpi1) ...
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Unpacking libgcc-11-dev:armhf (11.2.0-16+rpi1) over (11.2.0-14+rpi1) ...
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Unpacking gcc-11 (11.2.0-16+rpi1) over (11.2.0-14+rpi1) ...
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Unpacking cpp-11 (11.2.0-16+rpi1) over (11.2.0-14+rpi1) ...
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Setting up libstdc++6:armhf (11.2.0-16+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
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Setting up python3-minimal (3.9.7-1+b4) ...
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Setting up media-types (5.0.0) ...
Setting up libpipeline1:armhf (1.5.5-1) ...
Setting up cpp-11 (11.2.0-16+rpi1) ...
Setting up libpciaccess0:armhf (0.16-3) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.3-1) ...
Setting up hdf5-helpers (1.10.7+repack-4+rpi1) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.70.3-1) ...
No schema files found: doing nothing.
Setting up libcbor0.8:armhf (0.8.0-2) ...
Setting up libdebhelper-perl (13.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.41-2) ...
Setting up libgomp1:armhf (11.2.0-16+rpi1) ...
Setting up libaec0:armhf (1.0.6-1) ...
Setting up libasan6:armhf (11.2.0-16+rpi1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libuv1:armhf (1.43.0-1) ...
Setting up libexpat1-dev:armhf (2.4.4-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up emacsen-common (3.0.4) ...
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Setting up ed (1.17-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up dh-elpa-helper (2.0.10) ...
Setting up libncurses6:armhf (6.3-2) ...
Setting up liblzf1:armhf (3.6-3) ...
Setting up libsigsegv2:armhf (2.14-1) ...
Setting up diffstat (1.64-1) ...
Setting up libssl-dev:armhf (1.1.1m-1) ...
Setting up libhwloc15:armhf (2.7.0-2) ...
Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libatomic1:armhf (11.2.0-16+rpi1) ...
Setting up libevent-2.1-7:armhf (2.1.12-stable-1) ...
Setting up autopoint (0.21-4) ...
Setting up libjsoncpp25:armhf (1.9.5-3) ...
Setting up liblz4-dev:armhf (1.9.3-2) ...
Setting up pkg-config (0.29.2-1) ...
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Setting up libltdl7:armhf (2.4.6-15) ...
Setting up libgfortran5:armhf (11.2.0-16+rpi1) ...
Setting up libubsan1:armhf (11.2.0-16+rpi1) ...
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Setting up libnuma1:armhf (2.0.14-3) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
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Setting up libedit2:armhf (3.1-20210910-1) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
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Setting up m4 (1.4.18-5) ...
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Setting up autoconf (2.71-2) ...
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Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
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Setting up gcc-11 (11.2.0-16+rpi1) ...
Setting up groff-base (1.22.4-8) ...
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Setting up python3.9 (3.9.10-1+rpi1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (39.0-1) ...
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Setting up g++-11 (11.2.0-16+rpi1) ...
Setting up openssh-client (1:8.7p1-4) ...
update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode
update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode
update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
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Setting up python3 (3.9.7-1+b4) ...
Setting up man-db (2.10.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxnvctrl0:armhf (470.103.01-1) ...
Setting up dh-autoreconf (20) ...
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Setting up cython3 (0.29.24-2) ...
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Setting up python3.9-dev (3.9.10-1+rpi1) ...
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Setting up cmake (3.22.1-1+b1) ...
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Setting up python3-lib2to3 (3.9.10-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
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Setting up python3-distutils (3.9.10-1) ...
Setting up dh-python (5.20220119) ...
Setting up librdmacm1:armhf (39.0-1) ...
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Setting up python3-setuptools (59.6.0-1.2) ...
Setting up python3-all (3.9.7-1+b4) ...
Setting up debhelper (13.6) ...
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Setting up libhwloc-plugins:armhf (2.7.0-2) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libpython3-all-dev:armhf (3.9.7-1+b4) ...
Setting up python3-dev (3.9.7-1+b4) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-numpy (1:1.21.5-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-all-dev (3.9.7-1+b4) ...
Setting up libfabric1:armhf (1.11.0-3) ...
Setting up libpmix2:armhf (4.1.1~rc6-1) ...
Setting up libopenmpi3:armhf (4.1.2~rc1-5+rpi1+b1) ...
Setting up python3-h5py-serial (3.6.0-2) ...
Setting up libhdf5-dev (1.10.7+repack-4+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpmix-dev:armhf (4.1.1~rc6-1) ...
Setting up openmpi-bin (4.1.2~rc1-5+rpi1+b1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libhdf5-openmpi-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up mpi-default-bin (1.14) ...
Setting up python3-mpi4py (3.1.3-1+rpi1) ...
Setting up libhdf5-openmpi-fortran-102:armhf (1.10.7+repack-4+rpi1) ...
Setting up libhdf5-openmpi-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libopenmpi-dev:armhf (4.1.2~rc1-5+rpi1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-cpp-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up libhdf5-openmpi-hl-cpp-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libhdf5-openmpi-hl-fortran-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-h5py-mpi (3.6.0-2) ...
Setting up libhdf5-openmpi-dev (1.10.7+repack-4+rpi1) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-bitshuffle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37.90.20220130-2+rpi2 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220130-2+rpi2 binutils-arm-linux-gnueabihf_2.37.90.20220130-2+rpi2 binutils-common_2.37.90.20220130-2+rpi2 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.24-2 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-exec_0.23.4 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffstat_1.64-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 ed_1.17-1 emacsen-common_3.0.4 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran-11_11.2.0-16+rpi1 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4+rpi1 hostname_3.23 ibverbs-providers_39.0-1 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37.90.20220130-2+rpi2 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcap-ng0_0.7.9-2.2+b1 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libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.3-2+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libuv1_1.43.0-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.103.01-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.0-2 mawk_1.3.4.20200120-3 media-types_5.0.0 mount_2.37.3-1 mpi-default-bin_1.14 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 openmpi-bin_4.1.2~rc1-5+rpi1+b1 openmpi-common_4.1.2~rc1-5+rpi1 openssh-client_1:8.7p1-4 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 python3_3.9.7-1+b4 python3-all_3.9.7-1+b4 python3-all-dev_3.9.7-1+b4 python3-dev_3.9.7-1+b4 python3-distutils_3.9.10-1 python3-h5py-mpi_3.6.0-2 python3-h5py-serial_3.6.0-2 python3-lib2to3_3.9.10-1 python3-minimal_3.9.7-1+b4 python3-mpi4py_3.1.3-1+rpi1 python3-numpy_1:1.21.5-1 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.9_3.9.10-1+rpi1 python3.9-dev_3.9.10-1+rpi1 python3.9-minimal_3.9.10-1+rpi1 quilt_0.66-2.1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-bitshuffle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.dEMqlSWz/trustedkeys.kbx': General error
gpgv: Signature made Mon Feb 7 23:02:55 2022 UTC
gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847
gpgv: issuer "debian@alteholz.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./bitshuffle_0.3.5-4.dsc
dpkg-source: info: extracting bitshuffle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz
dpkg-source: info: unpacking bitshuffle_0.3.5-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-old-api.patch
dpkg-source: info: applying change-build-flags.patch
dpkg-source: info: applying fix-deprecated.patch
dpkg-source: info: applying 0003-use-the-system-liblzf.patch
dpkg-source: info: applying 0005-use-the-system-lz4.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-737efc80-a18b-4b21-b4eb-c0e427b6d579
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bitshuffle
dpkg-buildpackage: info: source version 0.3.5-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf lzf/lzf
rm -rf lz4
dh_auto_clean
I: pybuild base:237: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
CC=mpicc dh_auto_build
I: pybuild base:237: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/h5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling bitshuffle/ext.pyx because it changed.
Compiling bitshuffle/h5.pyx because it changed.
[1/2] Cythonizing bitshuffle/ext.pyx
[2/2] Cythonizing bitshuffle/h5.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/bitshuffle
creating build/temp.linux-armhf-3.9/src
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c bitshuffle/ext.c -o build/temp.linux-armhf-3.9/bitshuffle/ext.o -O3 -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:666:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2292:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
2292 | __pyx_t_1 = (bshuf_using_NEON() != 0);
| ^~~~~~~~~~~~~~~~
| bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -O3 -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
src/bitshuffle.c: In function 'bshuf_compress_lz4_block':
src/bitshuffle.c:61:5: warning: 'LZ4_compress' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations]
61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:697:75: note: declared here
697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize);
| ^~~~~~~~~~~~
src/bitshuffle.c: In function 'bshuf_decompress_lz4_block':
src/bitshuffle.c:100:5: warning: 'LZ4_decompress_fast' is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations]
100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:754:16: note: declared here
754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize);
| ^~~~~~~~~~~~~~~~~~~
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -O3 -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -O3 -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/bitshuffle/ext.o build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/iochain.o -llz4 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c bitshuffle/h5.c -o build/temp.linux-armhf-3.9/bitshuffle/h5.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
src/bitshuffle.c: In function 'bshuf_compress_lz4_block':
src/bitshuffle.c:61:5: warning: 'LZ4_compress' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations]
61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:697:75: note: declared here
697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize);
| ^~~~~~~~~~~~
src/bitshuffle.c: In function 'bshuf_decompress_lz4_block':
src/bitshuffle.c:100:5: warning: 'LZ4_decompress_fast' is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations]
100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:754:16: note: declared here
754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize);
| ^~~~~~~~~~~~~~~~~~~
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/bitshuffle/h5.o build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o build/temp.linux-armhf-3.9/src/iochain.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -llz4 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
src/bitshuffle.c: In function 'bshuf_compress_lz4_block':
src/bitshuffle.c:61:5: warning: 'LZ4_compress' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations]
61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:697:75: note: declared here
697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize);
| ^~~~~~~~~~~~
src/bitshuffle.c: In function 'bshuf_decompress_lz4_block':
src/bitshuffle.c:100:5: warning: 'LZ4_decompress_fast' is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations]
100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:754:16: note: declared here
754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize);
| ^~~~~~~~~~~~~~~~~~~
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.9/src/bshuf_h5plugin.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o build/temp.linux-armhf-3.9/src/bshuf_h5plugin.o build/temp.linux-armhf-3.9/src/iochain.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -llz4 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.9/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.9 -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.9/lzf/lzf_filter.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.9 -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.9/src/lzf_h5plugin.o -O3 -pthread -fPIC -fno-strict-aliasing -std=c99 -ffast-math -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/lzf/lzf_filter.o build/temp.linux-armhf-3.9/src/lzf_h5plugin.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -llzf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-arm-linux-gnueabihf.so -fopenmp
# build the hdf5 plugins for hdf5 flavours
for flavour in serial openmpi; do\
builddir=/<<PKGBUILDDIR>>/build-$flavour;\
mkdir -p $builddir;\
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -std=c99 -ffast-math -pthread -O3 -fPIC \
-DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 \
-I/<<PKGBUILDDIR>>/lzf src/lzf_h5plugin.c lzf/lzf_filter.c \
`pkg-config --cflags --libs hdf5-$flavour` \
`pkg-config --cflags --libs liblzf` \
-o $builddir/libh5LZF.so;\
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -std=c99 -ffast-math -pthread -O3 -fPIC \
-DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 \
-I/<<PKGBUILDDIR>>/src src/bshuf_h5plugin.c src/bshuf_h5filter.c src/bitshuffle.c src/bitshuffle_core.c src/iochain.c \
`pkg-config --cflags --libs hdf5-$flavour` \
`pkg-config --cflags --libs liblz4` \
-o $builddir/libh5bshuf.so;\
done
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
src/bitshuffle.c: In function 'bshuf_compress_lz4_block':
src/bitshuffle.c:61:5: warning: 'LZ4_compress' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations]
61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:697:75: note: declared here
697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize);
| ^~~~~~~~~~~~
src/bitshuffle.c: In function 'bshuf_decompress_lz4_block':
src/bitshuffle.c:100:5: warning: 'LZ4_decompress_fast' is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations]
100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:754:16: note: declared here
754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize);
| ^~~~~~~~~~~~~~~~~~~
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
src/bitshuffle.c: In function 'bshuf_compress_lz4_block':
src/bitshuffle.c:61:5: warning: 'LZ4_compress' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations]
61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:697:75: note: declared here
697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize);
| ^~~~~~~~~~~~
src/bitshuffle.c: In function 'bshuf_decompress_lz4_block':
src/bitshuffle.c:100:5: warning: 'LZ4_decompress_fast' is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations]
100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size);
| ^~~~~~
In file included from src/bitshuffle.c:15:
/usr/include/lz4.h:754:16: note: declared here
754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize);
| ^~~~~~~~~~~~~~~~~~~
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
set -e; \
for py in `py3versions -s -v`; do \
mpirun --allow-run-as-root -n 1 pybuild --test -i python{version} -p $py; \
done
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build; python3.9 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... ok
----------------------------------------------------------------------
Ran 61 tests in 6.506s
OK
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for flavour in serial openmpi; do\
pdir=/<<PKGBUILDDIR>>/debian/tmp/`pkg-config --variable=PluginDir hdf5-$flavour`;\
builddir=/<<PKGBUILDDIR>>/build-$flavour;\
install -d $pdir;\
install -t $pdir $builddir/*;\
done
dh_auto_install
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/bitshuffle
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running build_ext
#################################
# Compiling with OpenMP support #
#################################
running install_lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_ext.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5filter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5plugin.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_regression.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-39.pyc
running install_egg_info
running egg_info
creating bitshuffle.egg-info
writing bitshuffle.egg-info/PKG-INFO
writing dependency_links to bitshuffle.egg-info/dependency_links.txt
writing requirements to bitshuffle.egg-info/requires.txt
writing top-level names to bitshuffle.egg-info/top_level.txt
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.h' under directory 'lz4'
warning: no files found matching '*.c' under directory 'lz4'
warning: no previously-included files found matching 'setup.cfg'
adding license file 'LICENSE'
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
Copying bitshuffle.egg-info to /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle-0.3.5.egg-info
Skipping SOURCES.txt
running install_scripts
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
dh_install -p bitshuffle /usr
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'bitshuffle-dbgsym' in '../bitshuffle-dbgsym_0.3.5-4_armhf.deb'.
dpkg-deb: building package 'bitshuffle' in '../bitshuffle_0.3.5-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../bitshuffle_0.3.5-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../bitshuffle_0.3.5-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-13T12:59:45Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bitshuffle_0.3.5-4_armhf.changes:
---------------------------------
Format: 1.8
Date: Mon, 07 Feb 2022 22:03:38 +0100
Source: bitshuffle
Binary: bitshuffle bitshuffle-dbgsym
Architecture: armhf
Version: 0.3.5-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Thorsten Alteholz <debian@alteholz.de>
Description:
bitshuffle - filter for improving compression of typed binary data
Closes: 958322
Changes:
bitshuffle (0.3.5-4) unstable; urgency=medium
.
[Picca Frédéric-Emmanuel]
* Bug fix: "Unvendor liblzf", thanks to Timo Röhling (Closes: #958322).
* Unvendor liblz4
* Built hdf5 plugins for serial and openmpi version of hdf5, and install
them at the expected default location.
.
[Thorsten Alteholz]
* debian/control: bump standard to 3.6.0
* debian/control: set Rules-Requires-Root: no
Checksums-Sha1:
ce38b36fcec8ccf61343e853c68e59607d35de96 455152 bitshuffle-dbgsym_0.3.5-4_armhf.deb
1850a54ff7cfb2b2b57d12daf73d93fba4bcbef1 9690 bitshuffle_0.3.5-4_armhf.buildinfo
3280948239ca9bcffd2878574936e36514d3abe1 142172 bitshuffle_0.3.5-4_armhf.deb
Checksums-Sha256:
371c998af1371f85c3db9da43f767fe27db21d69cb28e31d32d8f23ce5a15e1e 455152 bitshuffle-dbgsym_0.3.5-4_armhf.deb
744299191def81784629fb3f8d5fe5b3436e7dc63fb09f8e7042aff58821525d 9690 bitshuffle_0.3.5-4_armhf.buildinfo
b78cc13c841f775f9e80008c105fa78a49350b008977c09dd9cb68ad7f71707e 142172 bitshuffle_0.3.5-4_armhf.deb
Files:
4bb22a0b6f902461edd1ccb5d0a2e499 455152 debug optional bitshuffle-dbgsym_0.3.5-4_armhf.deb
847f67af5a9fd7c8bbad0ee4717cc5dd 9690 devel optional bitshuffle_0.3.5-4_armhf.buildinfo
7ab397d628b6c6e8d8c7b532fa8ef1a5 142172 libs optional bitshuffle_0.3.5-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bitshuffle-dbgsym_0.3.5-4_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 455152 bytes: control archive=932 bytes.
635 bytes, 12 lines control
938 bytes, 9 lines md5sums
Package: bitshuffle-dbgsym
Source: bitshuffle
Version: 0.3.5-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 557
Depends: bitshuffle (= 0.3.5-4)
Section: debug
Priority: optional
Description: debug symbols for bitshuffle
Build-Ids: 34bd4a25fac2b5a55874271af314a61ee347f837 3e64846710e974be352889cfd95c17472cfe31f0 4268850b1cc8e49a294c84adf99cf7fd198cf435 758904685c540d8cc1bf10f4059f488af7b56a79 b9e28029929539f5d6645fdc17a323fc01e4a5b9 c913f8da4ff8a7ba97c978f72e4b7fd4c99cf478 d7823cf2225d7ebdf2b757fccb8444cfaad27abf ff589eabe51b45cab86c5fea0bc5936a13cbc4a9
drwxr-xr-x root/root 0 2022-02-07 21:03 ./
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/debug/.build-id/34/
-rw-r--r-- root/root 21988 2022-02-07 21:03 ./usr/lib/debug/.build-id/34/bd4a25fac2b5a55874271af314a61ee347f837.debug
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/debug/.build-id/3e/
-rw-r--r-- root/root 193676 2022-02-07 21:03 ./usr/lib/debug/.build-id/3e/64846710e974be352889cfd95c17472cfe31f0.debug
drwxr-xr-x root/root 0 2022-02-07 21:03 ./usr/lib/debug/.build-id/42/
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bitshuffle_0.3.5-4_armhf.deb
----------------------------
new Debian package, version 2.0.
size 142172 bytes: control archive=2372 bytes.
2223 bytes, 41 lines control
2205 bytes, 22 lines md5sums
257 bytes, 12 lines * postinst #!/bin/sh
406 bytes, 12 lines * prerm #!/bin/sh
Package: bitshuffle
Version: 0.3.5-4
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 527
Depends: libc6 (>= 2.4), libgomp1 (>= 6), libhdf5-103-1, libhdf5-openmpi-103-1 (>= 1.8.13), liblz4-1 (>= 0.0~r114), liblzf1 (>= 1.5), cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-h5py-serial, python3-numpy, python3-pkg-resources, python3:any
Section: libs
Priority: optional
Homepage: https://github.com/kiyo-masui/bitshuffle
Description: filter for improving compression of typed binary data
Bitshuffle is an algorithm that rearranges typed, binary data for
improving compression, as well as a python/C package that implements
this algorithm within the Numpy framework.
.
The library can be used along side HDF5 to compress and decompress
datasets and is integrated through the dynamically loaded filters
framework. Bitshuffle is HDF5 filter number 32008.
.
Algorithmically, Bitshuffle is closely related to HDF5's Shuffle
filter except it operates at the bit level instead of the byte level.
Arranging a typed data array in to a matrix with the elements as the
rows and the bits within the elements as the columns, Bitshuffle
"transposes" the matrix, such that all the least-significant-bits
are in a row, etc. This transpose is performed within blocks of
data roughly 8kB long.
.
This does not in itself compress data, only rearranges it for more
efficient compression. To perform the actual compression you will
need a compression library. Bitshuffle has been designed to be well
matched Marc Lehmann's LZF as well as LZ4. Note that because
Bitshuffle modifies the data at the bit level, sophisticated entropy
reducing compression libraries such as GZIP and BZIP are unlikely to
achieve significantly better compression than simpler and faster
duplicate-string-elimination algorithms such as LZF and LZ4.
Bitshuffle thus includes routines (and HDF5 filter options) to apply
LZ4 compression to each block after shuffling.
.
The Bitshuffle algorithm relies on neighbouring elements of a dataset
being highly correlated to improve data compression. Any correlations
that span at least 24 elements of the dataset may be exploited to
improve compression.
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-rw-r--r-- root/root 6406 2022-02-07 15:05 ./usr/share/doc/bitshuffle/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 6684
Build-Time: 67
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 567
Job: bitshuffle_0.3.5-4
Machine Architecture: armhf
Package: bitshuffle
Package-Time: 651
Source-Version: 0.3.5-4
Space: 6684
Status: successful
Version: 0.3.5-4
--------------------------------------------------------------------------------
Finished at 2022-02-13T12:59:45Z
Build needed 00:10:51, 6684k disk space