bitshuffle →
0.3.5-3.1+b1 →
armhf → 2020-12-10 01:23:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| bitshuffle 0.3.5-3.1+b1 (armhf) Thu, 10 Dec 2020 01:01:36 +0000 |
+==============================================================================+
Package: bitshuffle
Version: 0.3.5-3.1+b1
Source Version: 0.3.5-3.1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-51d1b22b-a701-4338-9659-ef3ee5620634' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 26s (970 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/alteholz/bitshuffle.git
Please use:
git clone https://salsa.debian.org/alteholz/bitshuffle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 120 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3.1 (dsc) [1694 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3.1 (tar) [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3.1 (diff) [5680 B]
Fetched 120 kB in 1s (202 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bitshuffle-jDKaQJ/bitshuffle-0.3.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitshuffle-jDKaQJ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-oDsNp9/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-oDsNp9/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-oDsNp9/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2780 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 62 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (21.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12744 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py-mpi, quilt, cmake, pkg-config, cython3
Filtered Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py-mpi, quilt, cmake, pkg-config, cython3
dpkg-deb: building package 'sbuild-build-depends-bitshuffle-dummy' in '/<<BUILDDIR>>/resolver-oDsNp9/apt_archive/sbuild-build-depends-bitshuffle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bitshuffle-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Sources [569 B]
Get:5 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ Packages [655 B]
Fetched 2557 B in 1s (3129 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bitshuffle build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data cpp-10 cpp-9
cython3 debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism
diffstat dwz ed file g++-10 gcc-10 gcc-10-base gcc-9 gcc-9-base gettext
gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libasan5 libasan6
libatomic1 libblas3 libbrotli1 libbsd0 libcbor0 libcc1-0 libcroco3 libcurl4
libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfido2-1
libfile-stripnondeterminism-perl libgcc-10-dev libgcc-9-dev libgcc-s1
libgfortran-9-dev libgfortran5 libglib2.0-0 libgomp1 libhdf5-103-1
libhdf5-hl-100 libhdf5-openmpi-103-1 libhdf5-openmpi-cpp-103-1
libhdf5-openmpi-dev libhdf5-openmpi-fortran-102 libhdf5-openmpi-hl-100
libhdf5-openmpi-hl-cpp-100 libhdf5-openmpi-hl-fortran-100 libhwloc-dev
libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67 libisl23
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui
libjsoncpp1 liblapack3 libltdl-dev libltdl7 liblzf1 libmagic-mgc libmagic1
libncurses6 libncursesw6 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libprocps8
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1
libsigsegv2 libssh2-1 libstdc++-10-dev libstdc++6 libsub-override-perl
libsz2 libtinfo6 libtool libubsan1 libuchardet0 libuv1 libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 mailcap man-db
media-types mime-support mpi-default-bin node-jquery ocl-icd-libopencl1
openmpi-bin openmpi-common openssh-client pkg-config po-debconf procps
python3 python3-all python3-all-dev python3-dev python3-distutils
python3-h5py-mpi python3-h5py-serial python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.9 python3.9-dev python3.9-minimal quilt zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build
gcc-10-locales gcc-9-locales cython-doc dh-make gcc-10-doc gcc-9-doc
gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-doc libcoarrays-dev
groff lrzip libhdf5-doc libjs-jquery-ui-docs libtool-doc openmpi-doc
pciutils libstdc++-10-doc gcj-jdk m4-doc apparmor less www-browser
opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere
ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv
python-h5py-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg
python-setuptools-doc python3.9-venv python3.9-doc binfmt-support
default-mta | mail-transport-agent graphviz procmail
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common libgpm2
libcoarrays-openmpi-dev publicsuffix libjs-sizzle xauth
libmail-sendmail-perl psmisc less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data cpp-9 cython3
debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism diffstat
dwz ed file gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base
ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libarchive13 libasan5 libblas3 libbrotli1 libbsd0 libcbor0 libcroco3
libcurl4 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfido2-1
libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5
libglib2.0-0 libhdf5-103-1 libhdf5-hl-100 libhdf5-openmpi-103-1
libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-dev libhdf5-openmpi-fortran-102
libhdf5-openmpi-hl-100 libhdf5-openmpi-hl-cpp-100
libhdf5-openmpi-hl-fortran-100 libhwloc-dev libhwloc-plugins libhwloc15
libibverbs-dev libibverbs1 libicu67 libisl23 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjsoncpp1 liblapack3
libltdl-dev libltdl7 liblzf1 libmagic-mgc libmagic1 libncurses6
libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
libpmix-dev libpmix2 libprocps8 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librhash0 librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libsz2 libtool libuchardet0 libuv1 libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 mailcap man-db
media-types mime-support mpi-default-bin node-jquery ocl-icd-libopencl1
openmpi-bin openmpi-common openssh-client pkg-config po-debconf procps
python3 python3-all python3-all-dev python3-dev python3-distutils
python3-h5py-mpi python3-h5py-serial python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.9 python3.9-dev python3.9-minimal quilt
sbuild-build-depends-bitshuffle-dummy zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgomp1 libncursesw6 libstdc++-10-dev libstdc++6 libtinfo6
libubsan1
15 upgraded, 155 newly installed, 0 to remove and 47 not upgraded.
Need to get 213 MB of archives.
After this operation, 74.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oDsNp9/apt_archive ./ sbuild-build-depends-bitshuffle-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libisl23 armhf 0.23-1 [497 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-19+rpi1 [38.4 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-19+rpi1 [200 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-19+rpi1 [36.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-19+rpi1 [83.7 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-19+rpi1 [8180 B]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-19+rpi1 [300 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-19+rpi1 [115 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-19+rpi1 [41.4 MB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-19+rpi1 [1751 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-19+rpi1 [682 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-19+rpi1 [44.4 MB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-19+rpi1 [38.5 MB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-19+rpi1 [409 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1~rc1-2+rpi1 [789 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1~rc1-2+rpi1 [1624 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-4 [37.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.2+20201114-1 [328 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.2+20201114-1 [105 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1~rc1-2+rpi1 [1653 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1~rc1-2+rpi1 [460 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-4 [21.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-4 [64.1 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.3.0-19+rpi1 [198 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-1 [79.5 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libfido2-1 armhf 1.5.0-2 [46.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.4p1-3+b2 [793 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1 [3113 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.3.0-19+rpi1 [7468 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.3.0-19+rpi1 [348 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.3.0-19+rpi1 [639 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.3.0-19+rpi1 [7750 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2+b3 [25.7 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf diffstat armhf 1.63-1 [31.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf ed armhf 1.16-1 [54.4 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-19+rpi1 [231 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-19+rpi1 [278 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-19+rpi1 [8113 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 32.0-1+b1 [52.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 32.0-1+b1 [24.7 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [167 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [100 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.7 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.12-stable-1 [281 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.4.0+dfsg-2 [122 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 450.80.02-1 [25.3 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.13-1 [36.5 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.4.0+dfsg-2 [19.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.2.1-1 [369 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.5-7+rpi1 [1582 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103-1 armhf 1.10.6+repack-2 [1231 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-fortran-102 armhf 1.10.6+repack-2 [93.3 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-100 armhf 1.10.6+repack-2 [78.0 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-fortran-100 armhf 1.10.6+repack-2 [49.6 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-cpp-100 armhf 1.10.6+repack-2 [37.0 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.5-7+rpi1 [71.4 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 32.0-1+b1 [179 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libnuma1 armhf 2.0.12-1 [22.5 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libnuma-dev armhf 2.0.12-1 [35.6 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-14 [159 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.4.0+dfsg-2 [189 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-3 [396 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-3 [3996 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libpmix-dev armhf 3.2.1-1 [496 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.5-7+rpi1 [96.4 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.5-7+rpi1 [1041 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-dev armhf 1.10.6+repack-2 [2230 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.1~rc1-2+rpi1 [1412 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.1~rc1-2+rpi1 [3057 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.0-4 [21.2 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.0-4 [1068 B]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.0-4 [1056 B]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.1~rc1-2+rpi1 [501 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.0-4 [1164 B]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.0-4 [1060 B]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b2 [2930 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-serial armhf 2.10.0-9+b1 [580 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-7 [585 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-mpi armhf 2.10.0-9+b1 [584 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf quilt all 0.66-2.1 [319 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 213 MB in 32s (6710 kB/s)
Selecting previously unselected package libisl23:armhf.
(Reading database ... 12744 files and directories currently installed.)
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Unpacking libisl23:armhf (0.23-1) ...
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Unpacking libcc1-0:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
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Unpacking gcc-10-base:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Setting up gcc-10-base:armhf (10.2.0-19+rpi1) ...
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Setting up libgcc-s1:armhf (10.2.0-19+rpi1) ...
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Unpacking g++-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../5-libstdc++-10-dev_10.2.0-19+rpi1_armhf.deb ...
Unpacking libstdc++-10-dev:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
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Unpacking libgcc-10-dev:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
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Unpacking gcc-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
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Unpacking cpp-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
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Unpacking libstdc++6:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Setting up libstdc++6:armhf (10.2.0-19+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking libuchardet0:armhf (0.0.7-1) ...
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Unpacking groff-base (1.22.4-5) ...
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Unpacking libpipeline1:armhf (1.5.3-1) ...
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Unpacking libexpat1:armhf (2.2.10-1) ...
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Setting up libpython3.9-minimal:armhf (3.9.1~rc1-2+rpi1) ...
Setting up libexpat1:armhf (2.2.10-1) ...
Setting up python3.9-minimal (3.9.1~rc1-2+rpi1) ...
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Unpacking mailcap (3.67) ...
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Unpacking mime-support (3.66) ...
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Unpacking libtinfo6:armhf (6.2+20201114-1) over (6.2+20200918-1) ...
Setting up libtinfo6:armhf (6.2+20201114-1) ...
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Unpacking libncursesw6:armhf (6.2+20201114-1) over (6.2+20200918-1) ...
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Selecting previously unselected package libpython3.9-stdlib:armhf.
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Setting up python3-minimal (3.9.0-4) ...
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Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpciaccess0:armhf (0.16-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-2) ...
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Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libcbor0:armhf (0.5.0+dfsg-2) ...
Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libgomp1:armhf (10.2.0-19+rpi1) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up libasan6:armhf (10.2.0-19+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libuv1:armhf (1.40.0-1) ...
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up libx11-data (2:1.6.12-1) ...
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Setting up ed (1.16-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-1) ...
Setting up liblzf1:armhf (3.6-3) ...
Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libatomic1:armhf (10.2.0-19+rpi1) ...
Setting up libevent-2.1-7:armhf (2.1.12-stable-1) ...
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Setting up pkg-config (0.29.2-1) ...
Setting up libltdl7:armhf (2.4.6-14) ...
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Setting up libnuma1:armhf (2.0.12-1) ...
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Setting up librhash0:armhf (1.4.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up openmpi-common (4.0.5-7+rpi1) ...
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Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
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Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
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Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
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update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (32.0-1+b1) ...
Setting up gettext (0.19.8.1-10) ...
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Setting up g++-10 (10.2.0-19+rpi1) ...
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Setting up openssh-client (1:8.4p1-3+b2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
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Setting up python3 (3.9.0-4) ...
Setting up quilt (0.66-2.1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxnvctrl0:armhf (450.80.02-1) ...
Setting up python3-six (1.15.0-2) ...
Setting up libgcc-9-dev:armhf (9.3.0-19+rpi1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-14) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-7) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up python3.9-dev (3.9.1~rc1-2+rpi1) ...
Setting up cmake (3.18.4-1+rpi1) ...
Setting up libhwloc-dev:armhf (2.4.0+dfsg-2) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up gcc-9 (9.3.0-19+rpi1) ...
Setting up libpython3-dev:armhf (3.9.0-4) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libgfortran-9-dev:armhf (9.3.0-19+rpi1) ...
Setting up python3-all (3.9.0-4) ...
Setting up libibverbs-dev:armhf (32.0-1+b1) ...
Setting up libhwloc-plugins:armhf (2.4.0+dfsg-2) ...
Setting up libpython3-all-dev:armhf (3.9.0-4) ...
Setting up python3-dev (3.9.0-4) ...
Setting up python3-numpy (1:1.19.4-1+b2) ...
Setting up python3-all-dev (3.9.0-4) ...
Setting up gfortran-9 (9.3.0-19+rpi1) ...
Setting up libpmix2:armhf (3.2.1-1) ...
Setting up libopenmpi3:armhf (4.0.5-7+rpi1) ...
Setting up python3-h5py-serial (2.10.0-9+b1) ...
Setting up libpmix-dev:armhf (3.2.1-1) ...
Setting up openmpi-bin (4.0.5-7+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libhdf5-openmpi-103-1:armhf (1.10.6+repack-2) ...
Setting up mpi-default-bin (1.13) ...
Setting up python3-mpi4py (3.0.3-7) ...
Setting up libhdf5-openmpi-fortran-102:armhf (1.10.6+repack-2) ...
Setting up libhdf5-openmpi-hl-100:armhf (1.10.6+repack-2) ...
Setting up libopenmpi-dev:armhf (4.0.5-7+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libhdf5-openmpi-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libhdf5-openmpi-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up python3-h5py-mpi (2.10.0-9+b1) ...
Setting up libhdf5-openmpi-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up debhelper (13.2.1) ...
Setting up dh-exec (0.23.2+b3) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-bitshuffle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 gcc-9_9.3.0-19+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 cmake_3.18.4-1+rpi1 cmake-data_3.18.4-1+rpi1 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 cpp-9_9.3.0-19+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-exec_0.23.2+b3 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffstat_1.63-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 ed_1.16-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gcc-9_9.3.0-19+rpi1 gcc-9-base_9.3.0-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-9_9.3.0-19+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 ibverbs-providers_32.0-1+b1 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 krb5-locales_1.17-10 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan5_9.3.0-19+rpi1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcbor0_0.5.0+dfsg-2 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl4_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libedit2_3.1-20191231-1 libelf1_0.182-1 libevent-2.1-7_2.1.12-stable-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfido2-1_1.5.0-2 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-9-dev_9.3.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran-9-dev_9.3.0-19+rpi1 libgfortran5_10.2.0-19+rpi1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhdf5-103-1_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-openmpi-103-1_1.10.6+repack-2 libhdf5-openmpi-cpp-103-1_1.10.6+repack-2 libhdf5-openmpi-dev_1.10.6+repack-2 libhdf5-openmpi-fortran-102_1.10.6+repack-2 libhdf5-openmpi-hl-100_1.10.6+repack-2 libhdf5-openmpi-hl-cpp-100_1.10.6+repack-2 libhdf5-openmpi-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libhwloc-dev_2.4.0+dfsg-2 libhwloc-plugins_2.4.0+dfsg-2 libhwloc15_2.4.0+dfsg-2 libibverbs-dev_32.0-1+b1 libibverbs1_32.0-1+b1 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libisl23_0.23-1 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libjs-jquery_3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui_1.12.1+dfsg-7 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1 libldap-common_2.4.56+dfsg-1+rpi1 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzf1_3.6-3 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-1 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libnuma-dev_2.0.12-1 libnuma1_2.0.12-1 libopenmpi-dev_4.0.5-7+rpi1 libopenmpi3_4.0.5-7+rpi1 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.16-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpmix-dev_3.2.1-1 libpmix2_3.2.1-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-all-dev_3.9.0-4 libpython3-dev_3.9.0-4 libpython3-stdlib_3.9.0-4 libpython3.9_3.9.1~rc1-2+rpi1 libpython3.9-dev_3.9.1~rc1-2+rpi1 libpython3.9-minimal_3.9.1~rc1-2+rpi1 libpython3.9-stdlib_3.9.1~rc1-2+rpi1 libreadline8_8.1~rc2-2 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libuv1_1.40.0-1 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-6.3 libxnvctrl0_450.80.02-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 mpi-default-bin_1.13 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 node-jquery_3.5.1+dfsg+~3.5.4-3 ocl-icd-libopencl1_2.2.13-1 openmpi-bin_4.0.5-7+rpi1 openmpi-common_4.0.5-7+rpi1 openssh-client_1:8.4p1-3+b2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 procps_2:3.3.16-5 python3_3.9.0-4 python3-all_3.9.0-4 python3-all-dev_3.9.0-4 python3-dev_3.9.0-4 python3-distutils_3.8.6-1 python3-h5py-mpi_2.10.0-9+b1 python3-h5py-serial_2.10.0-9+b1 python3-lib2to3_3.8.6-1 python3-minimal_3.9.0-4 python3-mpi4py_3.0.3-7 python3-numpy_1:1.19.4-1+b2 python3-pkg-resources_50.3.0-1 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3.9_3.9.1~rc1-2+rpi1 python3.9-dev_3.9.1~rc1-2+rpi1 python3.9-minimal_3.9.1~rc1-2+rpi1 quilt_0.66-2.1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-bitshuffle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0b6Hev5r/trustedkeys.kbx': General error
gpgv: Signature made Tue Apr 7 19:13:21 2020 UTC
gpgv: using RSA key A0939BCC0AC3134E56B48C91EFE86C6C7FFECF83
gpgv: issuer "pini@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bitshuffle_0.3.5-3.1.dsc
dpkg-source: info: extracting bitshuffle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz
dpkg-source: info: unpacking bitshuffle_0.3.5-3.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-old-api.patch
dpkg-source: info: applying change-build-flags.patch
dpkg-source: info: applying fix-deprecated.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.5-3.1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-51d1b22b-a701-4338-9659-ef3ee5620634
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bitshuffle
dpkg-buildpackage: info: source version 0.3.5-3.1+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/h5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling bitshuffle/ext.pyx because it changed.
Compiling bitshuffle/h5.pyx because it changed.
[1/2] Cythonizing bitshuffle/ext.pyx
[2/2] Cythonizing bitshuffle/h5.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/bitshuffle
creating build/temp.linux-armhf-3.9/lz4
creating build/temp.linux-armhf-3.9/src
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c bitshuffle/ext.c -o build/temp.linux-armhf-3.9/bitshuffle/ext.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:653:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2283:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
2283 | __pyx_t_1 = (bshuf_using_NEON() != 0);
| ^~~~~~~~~~~~~~~~
| bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lz4/lz4.c -o build/temp.linux-armhf-3.9/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/bitshuffle/ext.o build/temp.linux-armhf-3.9/lz4/lz4.o build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/iochain.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c bitshuffle/h5.c -o build/temp.linux-armhf-3.9/bitshuffle/h5.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c lz4/lz4.c -o build/temp.linux-armhf-3.9/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/bitshuffle/h5.o build/temp.linux-armhf-3.9/lz4/lz4.o build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o build/temp.linux-armhf-3.9/src/iochain.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c lz4/lz4.c -o build/temp.linux-armhf-3.9/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-armhf-3.9/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.9/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.9/src/bshuf_h5plugin.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-armhf-3.9/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/lz4/lz4.o build/temp.linux-armhf-3.9/src/bitshuffle.o build/temp.linux-armhf-3.9/src/bitshuffle_core.o build/temp.linux-armhf-3.9/src/bshuf_h5filter.o build/temp.linux-armhf-3.9/src/bshuf_h5plugin.o build/temp.linux-armhf-3.9/src/iochain.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.9/lzf
creating build/temp.linux-armhf-3.9/lzf/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c lzf/lzf/lzf_c.c -o build/temp.linux-armhf-3.9/lzf/lzf/lzf_c.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c lzf/lzf/lzf_d.c -o build/temp.linux-armhf-3.9/lzf/lzf/lzf_d.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.9/lzf/lzf_filter.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/include/python3.9 -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.9/src/lzf_h5plugin.o -fno-strict-aliasing -ffast-math -std=c99 -O3 -fPIC -pthread -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/lzf/lzf/lzf_c.o build/temp.linux-armhf-3.9/lzf/lzf/lzf_d.o build/temp.linux-armhf-3.9/lzf/lzf_filter.o build/temp.linux-armhf-3.9/src/lzf_h5plugin.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-arm-linux-gnueabihf.so -fopenmp
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
set -e; \
for py in `py3versions -s -v`; do \
mpirun -n 1 pybuild --test -i python{version} -p $py; \
done
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build; python3.9 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... ok
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... ok
----------------------------------------------------------------------
Ran 61 tests in 22.306s
OK
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/bitshuffle
running install
running build
running build_py
running build_ext
#################################
# Compiling with OpenMP support #
#################################
running install_lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_ext.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5filter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5plugin.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__pycache__/test_regression.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-39.pyc
running install_egg_info
running egg_info
creating bitshuffle.egg-info
writing bitshuffle.egg-info/PKG-INFO
writing dependency_links to bitshuffle.egg-info/dependency_links.txt
writing requirements to bitshuffle.egg-info/requires.txt
writing top-level names to bitshuffle.egg-info/top_level.txt
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'setup.cfg'
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
Copying bitshuffle.egg-info to /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle-0.3.5.egg-info
Skipping SOURCES.txt
running install_scripts
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'bitshuffle-dbgsym' in '../bitshuffle-dbgsym_0.3.5-3.1+b1_armhf.deb'.
dpkg-deb: building package 'bitshuffle' in '../bitshuffle_0.3.5-3.1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bitshuffle_0.3.5-3.1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-10T01:22:55Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bitshuffle_0.3.5-3.1+b1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Tue, 07 Apr 2020 20:50:47 +0200
Source: bitshuffle (0.3.5-3.1)
Binary: bitshuffle bitshuffle-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.5-3.1+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
bitshuffle - filter for improving compression of typed binary data
Changes:
bitshuffle (0.3.5-3.1+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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b41954c4640b5d41318c66660c455d8794c434c2 9657 bitshuffle_0.3.5-3.1+b1_armhf.buildinfo
f549a85dfe6d7163516994320ed2c22e10403b60 159704 bitshuffle_0.3.5-3.1+b1_armhf.deb
Checksums-Sha256:
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9d371c64ee4edc1b9bf97dbbc2a3bea34c8285b0ddf1967401898f6b8a9756ab 9657 bitshuffle_0.3.5-3.1+b1_armhf.buildinfo
a23c1f762890266a784b3350bfa1dd2ae1f571fe8da97be5b381fdff9f4316ff 159704 bitshuffle_0.3.5-3.1+b1_armhf.deb
Files:
df16505959eb1eb418a4846271201f2c 730280 debug optional bitshuffle-dbgsym_0.3.5-3.1+b1_armhf.deb
a39762f1ee0fb0e284ead5d8f88dc634 9657 devel optional bitshuffle_0.3.5-3.1+b1_armhf.buildinfo
a23b86448d79be88c046075b8b9dc68c 159704 libs optional bitshuffle_0.3.5-3.1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bitshuffle-dbgsym_0.3.5-3.1+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 730280 bytes: control archive=732 bytes.
493 bytes, 12 lines control
514 bytes, 5 lines md5sums
Package: bitshuffle-dbgsym
Source: bitshuffle (0.3.5-3.1)
Version: 0.3.5-3.1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 804
Depends: bitshuffle (= 0.3.5-3.1+b1)
Section: debug
Priority: optional
Description: debug symbols for bitshuffle
Build-Ids: 12a5e0c00e359b858ae55d0fd46c0e99eca6d6ad 6d39696df6b58107a413f34d3a9157d3cf653e8f 6d77aca41fcc0e9c8dd5d07b8b151cdba0f15110 dbcab46307417fc0c8d9008ba5aabb8a00f0e742
drwxr-xr-x root/root 0 2020-04-07 18:50 ./
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root 355100 2020-04-07 18:50 ./usr/lib/debug/.build-id/12/a5e0c00e359b858ae55d0fd46c0e99eca6d6ad.debug
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.build-id/6d/
-rw-r--r-- root/root 128240 2020-04-07 18:50 ./usr/lib/debug/.build-id/6d/39696df6b58107a413f34d3a9157d3cf653e8f.debug
-rw-r--r-- root/root 295380 2020-04-07 18:50 ./usr/lib/debug/.build-id/6d/77aca41fcc0e9c8dd5d07b8b151cdba0f15110.debug
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 10888 2020-04-07 18:50 ./usr/lib/debug/.build-id/db/cab46307417fc0c8d9008ba5aabb8a00f0e742.debug
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 16576 2020-04-07 18:50 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/bitshuffle.debug
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/share/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-04-07 18:50 ./usr/share/doc/bitshuffle-dbgsym -> bitshuffle
bitshuffle_0.3.5-3.1+b1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 159704 bytes: control archive=2284 bytes.
2202 bytes, 42 lines control
1908 bytes, 19 lines md5sums
245 bytes, 12 lines * postinst #!/bin/sh
394 bytes, 12 lines * prerm #!/bin/sh
Package: bitshuffle
Source: bitshuffle (0.3.5-3.1)
Version: 0.3.5-3.1+b1
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 632
Depends: libc6 (>= 2.4), libgomp1 (>= 6), libhdf5-openmpi-103-1 (>= 1.8.13), cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-h5py-serial, python3-numpy, python3-pkg-resources, python3:any
Section: libs
Priority: optional
Homepage: https://github.com/kiyo-masui/bitshuffle
Description: filter for improving compression of typed binary data
Bitshuffle is an algorithm that rearranges typed, binary data for
improving compression, as well as a python/C package that implements
this algorithm within the Numpy framework.
.
The library can be used along side HDF5 to compress and decompress
datasets and is integrated through the dynamically loaded filters
framework. Bitshuffle is HDF5 filter number 32008.
.
Algorithmically, Bitshuffle is closely related to HDF5's Shuffle
filter except it operates at the bit level instead of the byte level.
Arranging a typed data array in to a matrix with the elements as the
rows and the bits within the elements as the columns, Bitshuffle
"transposes" the matrix, such that all the least-significant-bits
are in a row, etc. This transpose is performed within blocks of
data roughly 8kB long.
.
This does not in itself compress data, only rearranges it for more
efficient compression. To perform the actual compression you will
need a compression library. Bitshuffle has been designed to be well
matched Marc Lehmann's LZF as well as LZ4. Note that because
Bitshuffle modifies the data at the bit level, sophisticated entropy
reducing compression libraries such as GZIP and BZIP are unlikely to
achieve significantly better compression than simpler and faster
duplicate-string-elimination algorithms such as LZF and LZ4.
Bitshuffle thus includes routines (and HDF5 filter options) to apply
LZ4 compression to each block after shuffling.
.
The Bitshuffle algorithm relies on neighbouring elements of a dataset
being highly correlated to improve data compression. Any correlations
that span at least 24 elements of the dataset may be exploited to
improve compression.
drwxr-xr-x root/root 0 2020-04-07 18:50 ./
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/
-rw-r--r-- root/root 11525 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/requires.txt
-rw-r--r-- root/root 11 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/
-rw-r--r-- root/root 402 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/__init__.py
-rw-r--r-- root/root 199832 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/ext.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 173372 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/h5.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/plugin/
-rw-r--r-- root/root 9640 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/plugin/libh5LZF.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 75176 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/plugin/libh5bshuf.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/tests/
-rw-r--r-- root/root 0 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/tests/__init__.py
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/tests/data/
-rw-r--r-- root/root 114447 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/tests/data/regression_0.1.3.h5
-rw-r--r-- root/root 1166 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/tests/make_regression_tdata.py
-rw-r--r-- root/root 20892 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/tests/test_ext.py
-rw-r--r-- root/root 2525 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/tests/test_h5filter.py
-rw-r--r-- root/root 2567 2020-04-07 18:50 ./usr/lib/python3/dist-packages/bitshuffle/tests/test_h5plugin.py
-rw-r--r-- root/root 896 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/tests/test_regression.py
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/share/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-04-07 18:50 ./usr/share/doc/bitshuffle/
-rw-r--r-- root/root 223 2020-04-07 18:50 ./usr/share/doc/bitshuffle/changelog.Debian.armhf.gz
-rw-r--r-- root/root 681 2020-04-07 18:50 ./usr/share/doc/bitshuffle/changelog.Debian.gz
-rw-r--r-- root/root 6406 2019-08-20 17:29 ./usr/share/doc/bitshuffle/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 9752
Build-Time: 315
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 912
Job: bitshuffle_0.3.5-3.1
Machine Architecture: armhf
Package: bitshuffle
Package-Time: 1279
Source-Version: 0.3.5-3.1
Space: 9752
Status: successful
Version: 0.3.5-3.1+b1
--------------------------------------------------------------------------------
Finished at 2020-12-10T01:22:55Z
Build needed 00:21:19, 9752k disc space