bitshuffle →
0.3.5-3 →
armhf → 2019-12-07 06:27:46
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| bitshuffle 0.3.5-3 (armhf) Sat, 07 Dec 2019 06:00:49 +0000 |
+==============================================================================+
Package: bitshuffle
Version: 0.3.5-3
Source Version: 0.3.5-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-ac5e1b82-57d2-4092-9eb3-cb81268818f7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 26s (929 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/alteholz/bitshuffle.git
Please use:
git clone https://salsa.debian.org/alteholz/bitshuffle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 120 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (dsc) [2166 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (tar) [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (diff) [5036 B]
Fetched 120 kB in 0s (1014 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bitshuffle-iZ3S0i/bitshuffle-0.3.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitshuffle-iZ3S0i' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-UBnd8i/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-UBnd8i/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-UBnd8i/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2703 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-UBnd8i/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12227 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
Filtered Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
dpkg-deb: building package 'sbuild-build-depends-bitshuffle-dummy' in '/<<BUILDDIR>>/resolver-UBnd8i/apt_archive/sbuild-build-depends-bitshuffle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bitshuffle-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Sources [568 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Packages [651 B]
Fetched 2552 B in 1s (3285 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-UBnd8i/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install bitshuffle build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 cpp-9 cython3 debhelper dh-autoreconf dh-exec dh-python
dh-strip-nondeterminism diffstat dwz file g++-9 gcc-8 gcc-8-base gcc-9
gcc-9-base gettext gettext-base gfortran-8 groff-base ibverbs-providers
intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasan5
libatomic1 libblas3 libbrotli1 libbsd0 libcc1-0 libcroco3 libcurl4
libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-8-dev libgcc-9-dev libgcc1
libgfortran-8-dev libgfortran5 libglib2.0-0 libgomp1 libgssapi-krb5-2
libhdf5-openmpi-103 libhdf5-openmpi-dev libhwloc-dev libhwloc-plugins
libhwloc15 libibverbs-dev libibverbs1 libicu63 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 libltdl-dev libltdl7 libmagic-mgc libmagic1
libmpdec2 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0
libpipeline1 libpmix2 libprocps7 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal
libpython3.7-stdlib librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libstdc++-9-dev libstdc++6 libsub-override-perl libsz2 libtinfo5 libtool
libubsan1 libuchardet0 libuv1 libxml2 m4 man-db mime-support mpi-default-bin
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.7 python3.7-dev python3.7-minimal quilt sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales gcc-9-locales cython-doc
dh-make gcc-9-doc libstdc++6-9-dbg gcc-8-doc libgcc1-dbg libgomp1-dbg
libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg
libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
libgettextpo-dev gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff lrzip
krb5-doc krb5-user libhdf5-doc libtool-doc openmpi-doc pciutils
libstdc++-9-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran
| fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python-h5py-doc
gfortran python-numpy-doc python3-pytest python3-numpy-dbg
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
default-mta | mail-transport-agent graphviz procmail
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev
publicsuffix xauth libmail-sendmail-perl psmisc less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 cython3 debhelper dh-autoreconf dh-exec dh-python
dh-strip-nondeterminism diffstat dwz file gcc-8 gcc-8-base gettext
gettext-base gfortran-8 groff-base ibverbs-providers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libbrotli1
libbsd0 libcroco3 libcurl4 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev libgfortran5
libglib2.0-0 libgssapi-krb5-2 libhdf5-openmpi-103 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu63
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libnl-3-200
libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3
libpciaccess0 libpipeline1 libpmix2 libprocps7 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib librhash0 librtmp1 libsigsegv2
libssh2-1 libssl1.1 libsub-override-perl libsz2 libtinfo5 libtool
libuchardet0 libuv1 libxml2 m4 man-db mime-support mpi-default-bin
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.7 python3.7-dev python3.7-minimal quilt
sbuild-build-depends-bitshuffle-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libatomic1 libcc1-0 libgcc-9-dev
libgcc1 libgomp1 libstdc++-9-dev libstdc++6 libubsan1
13 upgraded, 136 newly installed, 0 to remove and 21 not upgraded.
Need to get 138 MB of archives.
After this operation, 327 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UBnd8i/apt_archive ./ sbuild-build-depends-bitshuffle-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 9.2.1-19+rpi1 [38.1 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.2.1-19+rpi1 [194 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:9.2.1-19+rpi1 [36.9 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 9.2.1-19+rpi1 [73.7 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 9.2.1-19+rpi1 [8160 B]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.2.1-19+rpi1 [348 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 9.2.1-19+rpi1 [112 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.2.1-19+rpi1 [7627 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.2.1-19+rpi1 [1707 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.2.1-19+rpi1 [640 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.2.1-19+rpi1 [7284 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.2.1-19+rpi1 [6913 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 9.2.1-19+rpi1 [415 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.5-2 [584 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.5-2 [1527 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-1 [36.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.5-2 [1668 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.5-2 [347 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-1 [20.1 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-1 [61.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gcc-8-base armhf 8.3.0-24+rpi1 [193 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191025-1 [79.3 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.1p1-1 [713 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-1+b1 [292 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1+b1 [297 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.33.1-2 [112 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf cpp-8 armhf 8.3.0-24+rpi1 [6488 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgcc-8-dev armhf 8.3.0-24+rpi1 [593 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf gcc-8 armhf 8.3.0-24+rpi1 [6901 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-4 [140 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.3-2 [1137 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2 [25.3 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf diffstat armhf 1.63-1 [31.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-19+rpi1 [230 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-8-dev armhf 8.3.0-24+rpi1 [249 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf gfortran-8 armhf 8.3.0-24+rpi1 [6858 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 26.0-2 [47.1 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 26.0-2 [23.8 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [98.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [59.7 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.11-stable-1 [279 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-11 [387 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.1.0+dfsg-2+rpi1 [112 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.7 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.1.0+dfsg-2+rpi1 [17.0 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.4-1+b1 [370 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.2-4+rpi1+b1 [1680 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1306 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.2-4+rpi1 [168 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 26.0-2 [165 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-11 [159 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.1.0+dfsg-2+rpi1 [172 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.2-4+rpi1+b1 [183 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.2-4+rpi1+b1 [906 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-dev armhf 1.10.4+repack-10 [2181 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.5-2 [1252 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.5-2 [40.2 MB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-1 [20.1 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-1 [1068 B]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-1 [1064 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.5-2 [513 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-1 [1272 B]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-1 [1064 B]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.2.0-1 [154 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.16.5-1 [1908 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.13.0-1 [16.2 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-1 [413 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py armhf 2.10.0-2 [720 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.2.0-1 [307 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf quilt all 0.65-3 [318 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-4) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libcurl4:armhf (7.66.0-1+b1) ...
Setting up libpython3-stdlib:armhf (3.7.5-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gcc-9 (9.2.1-19+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.3.0-24+rpi1) ...
Setting up python3.7 (3.7.5-2) ...
Setting up libibverbs1:armhf (26.0-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up gcc-8 (8.3.0-24+rpi1) ...
Setting up libpython3-dev:armhf (3.7.5-1) ...
Setting up libstdc++-9-dev:armhf (9.2.1-19+rpi1) ...
Setting up ibverbs-providers:armhf (26.0-2) ...
Setting up openssh-client (1:8.1p1-1) ...
Setting up gfortran-8 (8.3.0-24+rpi1) ...
Setting up python3 (3.7.5-1) ...
Setting up quilt (0.65-3) ...
Setting up libhwloc-plugins:armhf (2.1.0+dfsg-2+rpi1) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.5-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.13.0-1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-11) ...
Setting up libpython3-all-dev:armhf (3.7.5-1) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up g++-9 (9.2.1-19+rpi1) ...
Setting up cmake (3.13.4-1) ...
Setting up libhwloc-dev:armhf (2.1.0+dfsg-2+rpi1) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-pkg-resources (41.2.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-setuptools (41.2.0-1) ...
Setting up libpmix2:armhf (3.1.4-1+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up libopenmpi3:armhf (4.0.2-4+rpi1+b1) ...
Setting up python3-all (3.7.5-1) ...
Setting up libibverbs-dev:armhf (26.0-2) ...
Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ...
Setting up python3-dev (3.7.5-1) ...
Setting up python3-numpy (1:1.16.5-1) ...
Setting up openmpi-bin (4.0.2-4+rpi1+b1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up python3-all-dev (3.7.5-1) ...
Setting up mpi-default-bin (1.13) ...
Setting up python3-mpi4py (3.0.3-1) ...
Setting up python3-h5py (2.10.0-2) ...
Setting up libopenmpi-dev:armhf (4.0.2-4+rpi1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.1) ...
Setting up dh-exec (0.23.2) ...
Setting up sbuild-build-depends-bitshuffle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-19+rpi1 gcc-8_8.3.0-24+rpi1 gcc-9_9.2.1-19+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-19+rpi1 libstdc++6_9.2.1-19+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2+rpi1 binutils-arm-linux-gnueabihf_2.33.1-2+rpi1 binutils-common_2.33.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-8_8.3.0-24+rpi1 cpp-9_9.2.1-19+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-exec_0.23.2 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-1 diffstat_1.63-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-4 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-19+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-8_8.3.0-24+rpi1 gcc-8-base_8.3.0-24+rpi1 gcc-9_9.2.1-19+rpi1 gcc-9-base_9.2.1-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-8_8.3.0-24+rpi1 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.23 ibverbs-providers_26.0-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-19+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-19+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcurl4_7.66.0-1+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libedit2_3.1-20191025-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-8-dev_8.3.0-24+rpi1 libgcc-9-dev_9.2.1-19+rpi1 libgcc1_1:9.2.1-19+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-8-dev_8.3.0-24+rpi1 libgfortran5_9.2.1-19+rpi1 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-19+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhdf5-openmpi-103_1.10.4+repack-10 libhdf5-openmpi-dev_1.10.4+repack-10 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-2+rpi1 libhwloc-plugins_2.1.0+dfsg-2+rpi1 libhwloc15_2.1.0+dfsg-2+rpi1 libibverbs-dev_26.0-2 libibverbs1_26.0-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 libltdl-dev_2.4.6-11 libltdl7_2.4.6-11 liblz4-1_1.9.2-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libopenmpi-dev_4.0.2-4+rpi1+b1 libopenmpi3_4.0.2-4+rpi1+b1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpmix2_3.1.4-1+b1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-all-dev_3.7.5-1 libpython3-dev_3.7.5-1 libpython3-stdlib_3.7.5-1 libpython3.7_3.7.5-2 libpython3.7-dev_3.7.5-2 libpython3.7-minimal_3.7.5-2 libpython3.7-stdlib_3.7.5-2 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-19+rpi1 libstdc++6_9.2.1-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libsz2_1.0.4-1 libtasn1-6_4.14-3 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-19+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-2 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 mpi-default-bin_1.13 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.6 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_4.0.2-4+rpi1+b1 openmpi-common_4.0.2-4+rpi1 openssh-client_1:8.1p1-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.15-2 python3_3.7.5-1 python3-all_3.7.5-1 python3-all-dev_3.7.5-1 python3-dev_3.7.5-1 python3-distutils_3.8.0-1 python3-h5py_2.10.0-2 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-1 python3-mpi4py_3.0.3-1 python3-numpy_1:1.16.5-1 python3-pkg-resources_41.2.0-1 python3-setuptools_41.2.0-1 python3-six_1.13.0-1 python3.7_3.7.5-2 python3.7-dev_3.7.5-2 python3.7-minimal_3.7.5-2 quilt_0.65-3 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-bitshuffle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Dec 1 18:44:11 2019 UTC
gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847
gpgv: issuer "debian@alteholz.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bitshuffle_0.3.5-3.dsc
dpkg-source: info: extracting bitshuffle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz
dpkg-source: info: unpacking bitshuffle_0.3.5-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-old-api.patch
dpkg-source: info: applying change-build-flags.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ac5e1b82-57d2-4092-9eb3-cb81268818f7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bitshuffle
dpkg-buildpackage: info: source version 0.3.5-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
running build_ext
Compiling bitshuffle/ext.pyx because it changed.
Compiling bitshuffle/h5.pyx because it changed.
[1/2] Cythonizing bitshuffle/ext.pyx
[2/2] Cythonizing bitshuffle/h5.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/bitshuffle
creating build/temp.linux-armhf-3.7/src
creating build/temp.linux-armhf-3.7/lz4
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c bitshuffle/ext.c -o build/temp.linux-armhf-3.7/bitshuffle/ext.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:641:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2274:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
2274 | __pyx_t_1 = (bshuf_using_NEON() != 0);
| ^~~~~~~~~~~~~~~~
| bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/ext.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c bitshuffle/h5.c -o build/temp.linux-armhf-3.7/bitshuffle/h5.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/h5.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.7/lzf
creating build/temp.linux-armhf-3.7/lzf/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.7/src/lzf_h5plugin.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.7/lzf/lzf_filter.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_c.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_d.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -std=c99 -fPIC -ffast-math -fno-strict-aliasing -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/lzf_h5plugin.o build/temp.linux-armhf-3.7/lzf/lzf_filter.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so -fopenmp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/h5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build; python3.7 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:26: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:46: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:68: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5plugin.py:37: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_regression.py:30: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(file_name)
ok
----------------------------------------------------------------------
Ran 61 tests in 14.185s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/bitshuffle
running install
running build
running build_py
running build_ext
#################################
# Compiling with OpenMP support #
#################################
running install_lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/data
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_ext.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5filter.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5plugin.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_regression.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-37.pyc
running install_egg_info
running egg_info
creating bitshuffle.egg-info
writing bitshuffle.egg-info/PKG-INFO
writing dependency_links to bitshuffle.egg-info/dependency_links.txt
writing requirements to bitshuffle.egg-info/requires.txt
writing top-level names to bitshuffle.egg-info/top_level.txt
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'setup.cfg'
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
Copying bitshuffle.egg-info to /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle-0.3.5.egg-info
Skipping SOURCES.txt
running install_scripts
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'bitshuffle-dbgsym' in '../bitshuffle-dbgsym_0.3.5-3_armhf.deb'.
dpkg-deb: building package 'bitshuffle' in '../bitshuffle_0.3.5-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bitshuffle_0.3.5-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-12-07T06:27:21Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bitshuffle_0.3.5-3_armhf.changes:
---------------------------------
Format: 1.8
Date: Sun, 01 Dec 2019 19:03:38 +0100
Source: bitshuffle
Binary: bitshuffle bitshuffle-dbgsym
Architecture: armhf
Version: 0.3.5-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Thorsten Alteholz <debian@alteholz.de>
Description:
bitshuffle - filter for improving compression of typed binary data
Changes:
bitshuffle (0.3.5-3) unstable; urgency=medium
.
* don't use -march=native when building the package
Checksums-Sha1:
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168805c58a2b0f98245ce43c05d63fef7f0a6b78 8072 bitshuffle_0.3.5-3_armhf.buildinfo
832e5671031402bfef4c03c3c688ae09fe357ec4 166780 bitshuffle_0.3.5-3_armhf.deb
Checksums-Sha256:
2954b1561076c7c2a398599a50dbf4bfbaf8c29407b3c81c02481deabe66b665 713684 bitshuffle-dbgsym_0.3.5-3_armhf.deb
72a162f66b9c9bc87b5f111a27aded1a75c03528111bd706923e224d70b11d32 8072 bitshuffle_0.3.5-3_armhf.buildinfo
027abae669cd455d3502a26165347eec71cc1cc52dd9b76948fb01b1b2d88e30 166780 bitshuffle_0.3.5-3_armhf.deb
Files:
b293a74a9aa1d6b33a8112f36904bdd1 713684 debug optional bitshuffle-dbgsym_0.3.5-3_armhf.deb
1144ff8e5d0d990e31ca469c4f054ee1 8072 devel optional bitshuffle_0.3.5-3_armhf.buildinfo
bdac933489cf0b2ec44a9e1110f8801f 166780 libs optional bitshuffle_0.3.5-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bitshuffle-dbgsym_0.3.5-3_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 713684 bytes: control archive=728 bytes.
471 bytes, 12 lines control
514 bytes, 5 lines md5sums
Package: bitshuffle-dbgsym
Source: bitshuffle
Version: 0.3.5-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 788
Depends: bitshuffle (= 0.3.5-3)
Section: debug
Priority: optional
Description: debug symbols for bitshuffle
Build-Ids: 94e1519d7a3a557b0ab6db100a7fde60d66cb8c1 dfd486b6c44a673b24884e31c28a616c29a0a25a e33df48cf10a69dbcc2f56703a8b14852db25c51 f393890f98861d8f7a557101094ef50f0b17fb4a
drwxr-xr-x root/root 0 2019-12-01 18:03 ./
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root 279840 2019-12-01 18:03 ./usr/lib/debug/.build-id/94/e1519d7a3a557b0ab6db100a7fde60d66cb8c1.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 11088 2019-12-01 18:03 ./usr/lib/debug/.build-id/df/d486b6c44a673b24884e31c28a616c29a0a25a.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/e3/
-rw-r--r-- root/root 133284 2019-12-01 18:03 ./usr/lib/debug/.build-id/e3/3df48cf10a69dbcc2f56703a8b14852db25c51.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/f3/
-rw-r--r-- root/root 339596 2019-12-01 18:03 ./usr/lib/debug/.build-id/f3/93890f98861d8f7a557101094ef50f0b17fb4a.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 24936 2019-12-01 18:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/bitshuffle.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-01 18:03 ./usr/share/doc/bitshuffle-dbgsym -> bitshuffle
bitshuffle_0.3.5-3_armhf.deb
----------------------------
new Debian package, version 2.0.
size 166780 bytes: control archive=2232 bytes.
2156 bytes, 41 lines control
1827 bytes, 18 lines md5sums
246 bytes, 12 lines * postinst #!/bin/sh
395 bytes, 12 lines * prerm #!/bin/sh
Package: bitshuffle
Version: 0.3.5-3
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 671
Depends: libc6 (>= 2.4), libgomp1 (>= 6), libhdf5-openmpi-103 (>= 1.8.13), cython3, python3 (<< 3.8), python3 (>= 3.7~), python3-h5py, python3-numpy, python3-pkg-resources, python3:any
Section: libs
Priority: optional
Homepage: https://github.com/kiyo-masui/bitshuffle
Description: filter for improving compression of typed binary data
Bitshuffle is an algorithm that rearranges typed, binary data for
improving compression, as well as a python/C package that implements
this algorithm within the Numpy framework.
.
The library can be used along side HDF5 to compress and decompress
datasets and is integrated through the dynamically loaded filters
framework. Bitshuffle is HDF5 filter number 32008.
.
Algorithmically, Bitshuffle is closely related to HDF5's Shuffle
filter except it operates at the bit level instead of the byte level.
Arranging a typed data array in to a matrix with the elements as the
rows and the bits within the elements as the columns, Bitshuffle
"transposes" the matrix, such that all the least-significant-bits
are in a row, etc. This transpose is performed within blocks of
data roughly 8kB long.
.
This does not in itself compress data, only rearranges it for more
efficient compression. To perform the actual compression you will
need a compression library. Bitshuffle has been designed to be well
matched Marc Lehmann's LZF as well as LZ4. Note that because
Bitshuffle modifies the data at the bit level, sophisticated entropy
reducing compression libraries such as GZIP and BZIP are unlikely to
achieve significantly better compression than simpler and faster
duplicate-string-elimination algorithms such as LZF and LZ4.
Bitshuffle thus includes routines (and HDF5 filter options) to apply
LZ4 compression to each block after shuffling.
.
The Bitshuffle algorithm relies on neighbouring elements of a dataset
being highly correlated to improve data compression. Any correlations
that span at least 24 elements of the dataset may be exploited to
improve compression.
drwxr-xr-x root/root 0 2019-12-01 18:03 ./
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/
-rw-r--r-- root/root 11525 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/requires.txt
-rw-r--r-- root/root 11 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/top_level.txt
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 9784
Build-Time: 318
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1223
Job: bitshuffle_0.3.5-3
Machine Architecture: armhf
Package: bitshuffle
Package-Time: 1592
Source-Version: 0.3.5-3
Space: 9784
Status: successful
Version: 0.3.5-3
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Finished at 2019-12-07T06:27:21Z
Build needed 00:26:32, 9784k disc space