bitshuffle →
0.3.5-3+b1 →
armhf → 2020-03-30 02:11:43
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| bitshuffle 0.3.5-3+b1 (armhf) Mon, 30 Mar 2020 02:00:07 +0000 |
+==============================================================================+
Package: bitshuffle
Version: 0.3.5-3+b1
Source Version: 0.3.5-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-bc48a2f0-874d-4a81-8ae1-76ac6dc3e84f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 11s (2321 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/alteholz/bitshuffle.git
Please use:
git clone https://salsa.debian.org/alteholz/bitshuffle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 120 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (dsc) [2166 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (tar) [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-3 (diff) [5036 B]
Fetched 120 kB in 0s (552 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bitshuffle-4LLP63/bitshuffle-0.3.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitshuffle-4LLP63' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-BJyeZD/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-BJyeZD/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-BJyeZD/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (7444 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (54.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12229 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
Filtered Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
dpkg-deb: building package 'sbuild-build-depends-bitshuffle-dummy' in '/<<BUILDDIR>>/resolver-BJyeZD/apt_archive/sbuild-build-depends-bitshuffle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bitshuffle-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Sources [568 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ Packages [650 B]
Fetched 2551 B in 0s (9438 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bitshuffle build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 cython3 debhelper dh-autoreconf dh-exec dh-python
dh-strip-nondeterminism diffstat dwz file gcc-10-base gcc-8 gcc-8-base
gettext gettext-base gfortran-8 groff-base ibverbs-providers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libatomic1 libblas3
libbrotli1 libbsd0 libcbor0 libcc1-0 libcroco3 libcurl4 libdebhelper-perl
libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev
libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
libexpat1 libexpat1-dev libfido2-1 libfile-stripnondeterminism-perl
libgcc-8-dev libgcc-s1 libgcc1 libgfortran-8-dev libgfortran5 libglib2.0-0
libgomp1 libgssapi-krb5-2 libhdf5-openmpi-103 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu63
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libnl-3-200
libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3
libpciaccess0 libpipeline1 libpmix2 libprocps8 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib librhash0 librtmp1 libsigsegv2
libssh2-1 libssl1.1 libstdc++6 libsub-override-perl libsz2 libtinfo5 libtool
libubsan1 libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxml2 libxnvctrl0 m4 man-db mime-support mpi-default-bin
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.7 python3.7-dev python3.7-minimal python3.8
python3.8-dev python3.8-minimal quilt sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales cython-doc dh-make gcc-8-doc
gettext-doc libasprintf-dev libgettextpo-dev gfortran-8-doc libcoarrays-dev
groff lrzip krb5-doc krb5-user libhdf5-doc libtool-doc openmpi-doc pciutils
gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran
| fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python-h5py-doc
gfortran python-numpy-doc python3-pytest python3-numpy-dbg
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
python3.8-venv python3.8-doc default-mta | mail-transport-agent graphviz
procmail
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev
publicsuffix xauth libmail-sendmail-perl psmisc less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 cython3 debhelper dh-autoreconf dh-exec dh-python
dh-strip-nondeterminism diffstat dwz file gcc-8 gcc-8-base gettext
gettext-base gfortran-8 groff-base ibverbs-providers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libbrotli1
libbsd0 libcbor0 libcroco3 libcurl4 libdebhelper-perl libedit2 libelf1
libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfido2-1 libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev
libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-openmpi-103
libhdf5-openmpi-dev libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev
libibverbs1 libicu63 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3
libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libncurses6
libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librhash0 librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libsz2 libtinfo5
libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxml2 libxnvctrl0 m4 man-db mime-support mpi-default-bin
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal
python3-mpi4py python3-numpy python3-pkg-resources python3-setuptools
python3-six python3.7 python3.7-dev python3.7-minimal python3.8
python3.8-dev python3.8-minimal quilt sbuild-build-depends-bitshuffle-dummy
sensible-utils zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libstdc++6
libubsan1
8 upgraded, 152 newly installed, 0 to remove and 17 not upgraded.
Need to get 172 MB of archives.
After this operation, 458 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BJyeZD/apt_archive ./ sbuild-build-depends-bitshuffle-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10-20200324-1+rpi1 [8216 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10-20200324-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200324-1+rpi1 [196 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10-20200324-1+rpi1 [408 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10-20200324-1+rpi1 [82.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200324-1+rpi1 [36.1 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10-20200324-1+rpi1 [36.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10-20200324-1+rpi1 [31.7 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-2 [37.5 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-2 [20.7 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-2 [62.6 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf gcc-8-base armhf 8.4.0-1+rpi1 [194 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-4 [59.8 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-4 [238 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfido2-1 armhf 1.3.1-1 [42.2 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7 [61.4 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7 [112 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7 [320 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7 [135 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.2p1-4 [781 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-1 [1628 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-2 [292 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.34.2-1 [114 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-1 [2648 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf cpp-8 armhf 8.4.0-1+rpi1 [6810 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1+b1 [1902 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libgcc-8-dev armhf 8.4.0-1+rpi1 [594 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf gcc-8 armhf 8.4.0-1+rpi1 [7273 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.10 [184 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2+b2 [25.7 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf diffstat armhf 1.63-1 [31.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200324-1+rpi1 [230 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-8-dev armhf 8.4.0-1+rpi1 [249 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf gfortran-8 armhf 8.4.0-1+rpi1 [7227 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 28.0-1 [47.6 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 28.0-1 [24.2 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [98.7 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [59.7 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.11-stable-1 [279 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.1.0+dfsg-4+rpi1 [112 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-5 [133 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 440.64-1 [25.1 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-3 [35.9 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.1.0+dfsg-4+rpi1 [18.7 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.5-1 [377 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.2-5+rpi1 [1679 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-11 [1329 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.2-5+rpi1 [168 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 28.0-1 [199 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-14 [159 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.1.0+dfsg-4+rpi1 [173 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.2-5+rpi1 [185 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.2-5+rpi1 [905 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-dev armhf 1.10.4+repack-11 [2194 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-2 [20.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.7-1 [1253 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.7-1 [40.2 MB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-2 [1072 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-2 [1060 B]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-2 [1168 B]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.7-1 [517 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-2 [1076 B]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-4 [697 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py armhf 2.10.0-2+b1 [1185 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf quilt all 0.65-3 [318 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up sensible-utils (0.0.12+nmu1) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-3) ...
Setting up librhash0:armhf (1.3.9-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up openmpi-common (4.0.2-5+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.16.3-1) ...
Setting up libkrb5-3:armhf (1.17-7) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up cpp-8 (8.4.0-1+rpi1) ...
Setting up libpython3.8-stdlib:armhf (3.8.2-1) ...
Setting up libfido2-1:armhf (1.3.1-1) ...
Setting up python3.8 (3.8.2-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-4) ...
Setting up libcc1-0:armhf (10-20200324-1+rpi1) ...
Setting up libprocps8:armhf (2:3.3.16-4) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libpython3-stdlib:armhf (3.8.2-2) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.11-stable-1) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libpython3.7-stdlib:armhf (3.7.7-1) ...
Setting up libevent-extra-2.1-7:armhf (2.1.11-stable-1) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.13.1-5) ...
Setting up libpython3.7:armhf (3.7.7-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.0-2) ...
Setting up libpython3.7-dev:armhf (3.7.7-1) ...
Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libevent-openssl-2.1-7:armhf (2.1.11-stable-1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-2) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up python3-six (1.14.0-2) ...
Setting up libpython3.8:armhf (3.8.2-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libevent-dev (2.1.11-stable-1) ...
Setting up libhwloc15:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libgssapi-krb5-2:armhf (1.17-7) ...
Setting up cython3 (0.29.14-0.1+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libgcc-8-dev:armhf (8.4.0-1+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-4) ...
Setting up procps (2:3.3.16-4) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libx11-6:armhf (2:1.6.9-2) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up libgfortran-8-dev:armhf (8.4.0-1+rpi1) ...
Setting up python3.7 (3.7.7-1) ...
Setting up libibverbs1:armhf (28.0-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up gcc-8 (8.4.0-1+rpi1) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up ibverbs-providers:armhf (28.0-1) ...
Setting up openssh-client (1:8.2p1-4) ...
Setting up gfortran-8 (8.4.0-1+rpi1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up python3-all (3.8.2-2) ...
Setting up quilt (0.65-3) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.7-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxnvctrl0:armhf (440.64-1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-14) ...
Setting up libpython3.8-dev:armhf (3.8.2-1) ...
Setting up python3-numpy (1:1.17.4-5+b1) ...
Setting up python3.8-dev (3.8.2-1) ...
Setting up cmake (3.16.3-1) ...
Setting up libhwloc-dev:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libpython3-dev:armhf (3.8.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libibverbs-dev:armhf (28.0-1) ...
Setting up libhwloc-plugins:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libpython3-all-dev:armhf (3.8.2-2) ...
Setting up python3-dev (3.8.2-2) ...
Setting up python3-all-dev (3.8.2-2) ...
Setting up libpmix2:armhf (3.1.5-1) ...
Setting up libopenmpi3:armhf (4.0.2-5+rpi1) ...
Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-11) ...
Setting up openmpi-bin (4.0.2-5+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up mpi-default-bin (1.13) ...
Setting up python3-mpi4py (3.0.3-4) ...
Setting up python3-h5py (2.10.0-2+b1) ...
Setting up libopenmpi-dev:armhf (4.0.2-5+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-dev (1.10.4+repack-11) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.10) ...
Setting up dh-exec (0.23.2+b2) ...
Setting up sbuild-build-depends-bitshuffle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-3+rpi1 gcc-8_8.4.0-1+rpi1 gcc-9_9.3.0-3+rpi1 libc6-dev_2.30-2+rpi1 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200324-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.0+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-8_8.4.0-1+rpi1 cpp-9_9.3.0-3+rpi1 cython3_0.29.14-0.1+b1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2+b2 dh-python_4.20200315 dh-strip-nondeterminism_1.6.3-2 diffstat_1.63-1 diffutils_1:3.7-3 dirmngr_2.2.19-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-3+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200324-1+rpi1 gcc-8_8.4.0-1+rpi1 gcc-8-base_8.4.0-1+rpi1 gcc-9_9.3.0-3+rpi1 gcc-9-base_9.3.0-3+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-8_8.4.0-1+rpi1 gnupg_2.2.19-3 gnupg-l10n_2.2.19-3 gnupg-utils_2.2.19-3 gpg_2.2.19-3 gpg-agent_2.2.19-3 gpg-wks-client_2.2.19-3 gpg-wks-server_2.2.19-3 gpgconf_2.2.19-3 gpgsm_2.2.19-3 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 ibverbs-providers_28.0-1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.0.0+b1 libarchive-zip-perl_1.68-1 libarchive13_3.4.0-2 libasan5_9.3.0-3+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200324-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-5+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-2+rpi1 libc-dev-bin_2.30-2+rpi1 libc6_2.30-2+rpi1 libc6-dev_2.30-2+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcbor0_0.5.0+dfsg-2 libcc1-0_10-20200324-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.10 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfido2-1_1.3.1-1 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-8-dev_8.4.0-1+rpi1 libgcc-9-dev_9.3.0-3+rpi1 libgcc-s1_10-20200324-1+rpi1 libgcc1_1:10-20200324-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-8-dev_8.4.0-1+rpi1 libgfortran5_10-20200324-1+rpi1 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200324-1+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7 libhdf5-openmpi-103_1.10.4+repack-11 libhdf5-openmpi-dev_1.10.4+repack-11 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-4+rpi1 libhwloc-plugins_2.1.0+dfsg-4+rpi1 libhwloc15_2.1.0+dfsg-4+rpi1 libibverbs-dev_28.0-1 libibverbs1_28.0-1 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-7 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7 libkrb5support0_1.17-7 libksba8_1.3.5-2 liblapack3_3.9.0-1 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libopenmpi-dev_4.0.2-5+rpi1 libopenmpi3_4.0.2-5+rpi1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpmix2_3.1.5-1 libprocps8_2:3.3.16-4 libpsl5_0.21.0-1 libpython3-all-dev_3.8.2-2 libpython3-dev_3.8.2-2 libpython3-stdlib_3.8.2-2 libpython3.7_3.7.7-1 libpython3.7-dev_3.7.7-1 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 libpython3.8_3.8.2-1 libpython3.8-dev_3.8.2-1 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200324-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200324-1+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.34.2-1 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-5 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-4 libxnvctrl0_440.64-1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 mpi-default-bin_1.13 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 ocl-icd-libopencl1_2.2.12-3 openmpi-bin_4.0.2-5+rpi1 openmpi-common_4.0.2-5+rpi1 openssh-client_1:8.2p1-4 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.16-4 python3_3.8.2-2 python3-all_3.8.2-2 python3-all-dev_3.8.2-2 python3-dev_3.8.2-2 python3-distutils_3.8.2-2 python3-h5py_2.10.0-2+b1 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-2 python3-mpi4py_3.0.3-4 python3-numpy_1:1.17.4-5+b1 python3-pkg-resources_44.0.0-1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3.7_3.7.7-1 python3.7-dev_3.7.7-1 python3.7-minimal_3.7.7-1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 quilt_0.65-3 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-bitshuffle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Dec 1 18:44:11 2019 UTC
gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847
gpgv: issuer "debian@alteholz.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bitshuffle_0.3.5-3.dsc
dpkg-source: info: extracting bitshuffle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz
dpkg-source: info: unpacking bitshuffle_0.3.5-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-old-api.patch
dpkg-source: info: applying change-build-flags.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.5-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-bc48a2f0-874d-4a81-8ae1-76ac6dc3e84f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bitshuffle
dpkg-buildpackage: info: source version 0.3.5-3+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
I: pybuild base:217: python3.8 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.7 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
running build_ext
Compiling bitshuffle/ext.pyx because it changed.
Compiling bitshuffle/h5.pyx because it changed.
[1/2] Cythonizing bitshuffle/ext.pyx
[2/2] Cythonizing bitshuffle/h5.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/bitshuffle
creating build/temp.linux-armhf-3.7/src
creating build/temp.linux-armhf-3.7/lz4
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c bitshuffle/ext.c -o build/temp.linux-armhf-3.7/bitshuffle/ext.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:641:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2274:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
2274 | __pyx_t_1 = (bshuf_using_NEON() != 0);
| ^~~~~~~~~~~~~~~~
| bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/ext.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c bitshuffle/h5.c -o build/temp.linux-armhf-3.7/bitshuffle/h5.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/h5.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.7/lzf
creating build/temp.linux-armhf-3.7/lzf/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.7/src/lzf_h5plugin.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.7/lzf/lzf_filter.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_c.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_d.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -O3 -std=c99 -fPIC -ffast-math -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/lzf_h5plugin.o build/temp.linux-armhf-3.7/lzf/lzf_filter.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so -fopenmp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/h5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/data
running build_ext
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/bitshuffle
creating build/temp.linux-armhf-3.8/src
creating build/temp.linux-armhf-3.8/lz4
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c bitshuffle/ext.c -o build/temp.linux-armhf-3.8/bitshuffle/ext.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:641:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2274:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
2274 | __pyx_t_1 = (bshuf_using_NEON() != 0);
| ^~~~~~~~~~~~~~~~
| bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/bitshuffle.c -o build/temp.linux-armhf-3.8/src/bitshuffle.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.8/src/bitshuffle_core.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/iochain.c -o build/temp.linux-armhf-3.8/src/iochain.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c lz4/lz4.c -o build/temp.linux-armhf-3.8/lz4/lz4.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/bitshuffle/ext.o build/temp.linux-armhf-3.8/src/bitshuffle.o build/temp.linux-armhf-3.8/src/bitshuffle_core.o build/temp.linux-armhf-3.8/src/iochain.o build/temp.linux-armhf-3.8/lz4/lz4.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/ext.cpython-38-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c bitshuffle/h5.c -o build/temp.linux-armhf-3.8/bitshuffle/h5.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.8/src/bshuf_h5filter.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bitshuffle.c -o build/temp.linux-armhf-3.8/src/bitshuffle.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.8/src/bitshuffle_core.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/iochain.c -o build/temp.linux-armhf-3.8/src/iochain.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c lz4/lz4.c -o build/temp.linux-armhf-3.8/lz4/lz4.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/bitshuffle/h5.o build/temp.linux-armhf-3.8/src/bshuf_h5filter.o build/temp.linux-armhf-3.8/src/bitshuffle.o build/temp.linux-armhf-3.8/src/bitshuffle_core.o build/temp.linux-armhf-3.8/src/iochain.o build/temp.linux-armhf-3.8/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/h5.cpython-38-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.8/src/bshuf_h5plugin.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.8/src/bshuf_h5filter.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bitshuffle.c -o build/temp.linux-armhf-3.8/src/bitshuffle.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.8/src/bitshuffle_core.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/iochain.c -o build/temp.linux-armhf-3.8/src/iochain.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c lz4/lz4.c -o build/temp.linux-armhf-3.8/lz4/lz4.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/bshuf_h5plugin.o build/temp.linux-armhf-3.8/src/bshuf_h5filter.o build/temp.linux-armhf-3.8/src/bitshuffle.o build/temp.linux-armhf-3.8/src/bitshuffle_core.o build/temp.linux-armhf-3.8/src/iochain.o build/temp.linux-armhf-3.8/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-38-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.8/lzf
creating build/temp.linux-armhf-3.8/lzf/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.8/src/lzf_h5plugin.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.8/lzf/lzf_filter.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
85 | "lzf",
| ^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
86 | NULL,
| ^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
87 | (H5Z_set_local_func_t)(lzf_set_local),
| ^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
88 | (H5Z_func_t)(lzf_filter)
| ^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c lzf/lzf/lzf_c.c -o build/temp.linux-armhf-3.8/lzf/lzf/lzf_c.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.8 -c lzf/lzf/lzf_d.c -o build/temp.linux-armhf-3.8/lzf/lzf/lzf_d.o -fPIC -O3 -ffast-math -std=c99 -fno-strict-aliasing -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/lzf_h5plugin.o build/temp.linux-armhf-3.8/lzf/lzf_filter.o build/temp.linux-armhf-3.8/lzf/lzf/lzf_c.o build/temp.linux-armhf-3.8/lzf/lzf/lzf_d.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-38-arm-linux-gnueabihf.so -fopenmp
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build; python3.7 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:26: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:46: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py:68: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5plugin.py:37: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_regression.py:30: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(file_name)
ok
----------------------------------------------------------------------
Ran 61 tests in 7.280s
OK
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build; python3.8 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py:26: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py:46: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py:68: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5plugin.py:37: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(fname)
ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_regression.py:30: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
f = h5py.File(file_name)
ok
----------------------------------------------------------------------
Ran 61 tests in 7.189s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.7 setup.py install --root /<<PKGBUILDDIR>>/debian/bitshuffle
running install
running build
running build_py
running build_ext
#################################
# Compiling with OpenMP support #
#################################
running install_lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/data
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_ext.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5filter.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5plugin.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/__pycache__/test_regression.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/plugin
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-37.pyc
running install_egg_info
running egg_info
creating bitshuffle.egg-info
writing bitshuffle.egg-info/PKG-INFO
writing dependency_links to bitshuffle.egg-info/dependency_links.txt
writing requirements to bitshuffle.egg-info/requires.txt
writing top-level names to bitshuffle.egg-info/top_level.txt
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'setup.cfg'
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
Copying bitshuffle.egg-info to /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.7/dist-packages/bitshuffle-0.3.5.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/bitshuffle
running install
running build
running build_py
running build_ext
#################################
# Compiling with OpenMP support #
#################################
running install_lib
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/data
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__pycache__/test_ext.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5filter.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__pycache__/test_h5plugin.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/__pycache__/test_regression.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/ext.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/h5.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/plugin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/plugin
creating /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-38.pyc
running install_egg_info
running egg_info
writing bitshuffle.egg-info/PKG-INFO
writing dependency_links to bitshuffle.egg-info/dependency_links.txt
writing requirements to bitshuffle.egg-info/requires.txt
writing top-level names to bitshuffle.egg-info/top_level.txt
reading manifest file 'bitshuffle.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'setup.cfg'
writing manifest file 'bitshuffle.egg-info/SOURCES.txt'
Copying bitshuffle.egg-info to /<<PKGBUILDDIR>>/debian/bitshuffle/usr/lib/python3.8/dist-packages/bitshuffle-0.3.5.egg-info
Skipping SOURCES.txt
running install_scripts
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'bitshuffle-dbgsym' in '../bitshuffle-dbgsym_0.3.5-3+b1_armhf.deb'.
dpkg-deb: building package 'bitshuffle' in '../bitshuffle_0.3.5-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bitshuffle_0.3.5-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-30T02:11:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bitshuffle_0.3.5-3+b1_armhf.changes:
------------------------------------
Format: 1.8
Date: Sun, 01 Dec 2019 19:03:38 +0100
Source: bitshuffle (0.3.5-3)
Binary: bitshuffle bitshuffle-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.5-3+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
bitshuffle - filter for improving compression of typed binary data
Changes:
bitshuffle (0.3.5-3+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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2e7d8f97b83f82399b66293bcf0497cba5981522 9006 bitshuffle_0.3.5-3+b1_armhf.buildinfo
eb0f68dcb54b56f4e9133bac8048c41b96af75d4 217340 bitshuffle_0.3.5-3+b1_armhf.deb
Checksums-Sha256:
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b784abaef78d47eb9e1004b66a335644a93ece5730f19ff8adad29707ba3269f 9006 bitshuffle_0.3.5-3+b1_armhf.buildinfo
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Files:
af12eb1984372e65e8d486333bd7740e 1334776 debug optional bitshuffle-dbgsym_0.3.5-3+b1_armhf.deb
004caa412bf4d6f329cfa64ddaecde41 9006 devel optional bitshuffle_0.3.5-3+b1_armhf.buildinfo
7131875ea65e4478b99148aad816c39a 217340 libs optional bitshuffle_0.3.5-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bitshuffle-dbgsym_0.3.5-3+b1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 1334776 bytes: control archive=844 bytes.
570 bytes, 12 lines control
726 bytes, 7 lines md5sums
Package: bitshuffle-dbgsym
Source: bitshuffle (0.3.5-3)
Version: 0.3.5-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 1468
Depends: bitshuffle (= 0.3.5-3+b1)
Section: debug
Priority: optional
Description: debug symbols for bitshuffle
Build-Ids: 183f435a6bc3319a62494cfbe1f94fc881f6deaa 3ebd9647d055e14889aa232b23622a6134f0c30f 7cee5d9c9bfbdbca525e049063dafcce53b8856a c1d62dde44246861d7c6ca008c6e98392ba56d37 d8852adda455cdb4885d0bfb59a7873757fce181 ee9199432c7585f75599e4e1a55c6e32980e776d
drwxr-xr-x root/root 0 2019-12-01 18:03 ./
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/18/
-rw-r--r-- root/root 10548 2019-12-01 18:03 ./usr/lib/debug/.build-id/18/3f435a6bc3319a62494cfbe1f94fc881f6deaa.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/3e/
-rw-r--r-- root/root 132984 2019-12-01 18:03 ./usr/lib/debug/.build-id/3e/bd9647d055e14889aa232b23622a6134f0c30f.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root 372924 2019-12-01 18:03 ./usr/lib/debug/.build-id/7c/ee5d9c9bfbdbca525e049063dafcce53b8856a.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root 334060 2019-12-01 18:03 ./usr/lib/debug/.build-id/c1/d62dde44246861d7c6ca008c6e98392ba56d37.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/d8/
-rw-r--r-- root/root 317388 2019-12-01 18:03 ./usr/lib/debug/.build-id/d8/852adda455cdb4885d0bfb59a7873757fce181.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.build-id/ee/
-rw-r--r-- root/root 277304 2019-12-01 18:03 ./usr/lib/debug/.build-id/ee/9199432c7585f75599e4e1a55c6e32980e776d.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 37700 2019-12-01 18:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/bitshuffle.debug
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-01 18:03 ./usr/share/doc/bitshuffle-dbgsym -> bitshuffle
bitshuffle_0.3.5-3+b1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 217340 bytes: control archive=2324 bytes.
2189 bytes, 42 lines control
2389 bytes, 23 lines md5sums
245 bytes, 12 lines * postinst #!/bin/sh
394 bytes, 12 lines * prerm #!/bin/sh
Package: bitshuffle
Source: bitshuffle (0.3.5-3)
Version: 0.3.5-3+b1
Architecture: armhf
Maintainer: Thorsten Alteholz <debian@alteholz.de>
Installed-Size: 1154
Depends: libc6 (>= 2.4), libgomp1 (>= 6), libhdf5-openmpi-103 (>= 1.8.13), cython3, python3 (<< 3.9), python3 (>= 3.7~), python3-h5py, python3-numpy, python3-pkg-resources, python3:any
Section: libs
Priority: optional
Homepage: https://github.com/kiyo-masui/bitshuffle
Description: filter for improving compression of typed binary data
Bitshuffle is an algorithm that rearranges typed, binary data for
improving compression, as well as a python/C package that implements
this algorithm within the Numpy framework.
.
The library can be used along side HDF5 to compress and decompress
datasets and is integrated through the dynamically loaded filters
framework. Bitshuffle is HDF5 filter number 32008.
.
Algorithmically, Bitshuffle is closely related to HDF5's Shuffle
filter except it operates at the bit level instead of the byte level.
Arranging a typed data array in to a matrix with the elements as the
rows and the bits within the elements as the columns, Bitshuffle
"transposes" the matrix, such that all the least-significant-bits
are in a row, etc. This transpose is performed within blocks of
data roughly 8kB long.
.
This does not in itself compress data, only rearranges it for more
efficient compression. To perform the actual compression you will
need a compression library. Bitshuffle has been designed to be well
matched Marc Lehmann's LZF as well as LZ4. Note that because
Bitshuffle modifies the data at the bit level, sophisticated entropy
reducing compression libraries such as GZIP and BZIP are unlikely to
achieve significantly better compression than simpler and faster
duplicate-string-elimination algorithms such as LZF and LZ4.
Bitshuffle thus includes routines (and HDF5 filter options) to apply
LZ4 compression to each block after shuffling.
.
The Bitshuffle algorithm relies on neighbouring elements of a dataset
being highly correlated to improve data compression. Any correlations
that span at least 24 elements of the dataset may be exploited to
improve compression.
drwxr-xr-x root/root 0 2019-12-01 18:03 ./
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/
-rw-r--r-- root/root 11525 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/requires.txt
-rw-r--r-- root/root 11 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle-0.3.5.egg-info/top_level.txt
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/
-rw-r--r-- root/root 402 2018-11-05 15:21 ./usr/lib/python3/dist-packages/bitshuffle/__init__.py
-rw-r--r-- root/root 224396 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 220324 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/ext.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 185644 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 181580 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/h5.cpython-38-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/plugin/
-rw-r--r-- root/root 9640 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so
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drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/lib/python3/dist-packages/bitshuffle/tests/
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drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-01 18:03 ./usr/share/doc/bitshuffle/
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-rw-r--r-- root/root 6406 2019-08-20 17:29 ./usr/share/doc/bitshuffle/copyright
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 18844
Build-Time: 201
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 472
Job: bitshuffle_0.3.5-3
Machine Architecture: armhf
Package: bitshuffle
Package-Time: 693
Source-Version: 0.3.5-3
Space: 18844
Status: successful
Version: 0.3.5-3+b1
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Finished at 2020-03-30T02:11:40Z
Build needed 00:11:33, 18844k disk space