bitshuffle →
0.3.5-1 →
armhf → 2019-08-29 11:29:56
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| bitshuffle 0.3.5-1 (armhf) Thu, 29 Aug 2019 10:55:26 +0000 |
+==============================================================================+
Package: bitshuffle
Version: 0.3.5-1
Source Version: 0.3.5-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c5ede471-55cc-4a8e-b073-0eef6176d483' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.5 MB in 28s (875 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/alteholz/bitshuffle.git
Please use:
git clone https://salsa.debian.org/alteholz/bitshuffle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 119 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-1 (dsc) [2166 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-1 (tar) [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bitshuffle 0.3.5-1 (diff) [4616 B]
Fetched 119 kB in 0s (2418 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bitshuffle-ftHSek/bitshuffle-0.3.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitshuffle-ftHSek' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-opU0hD/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-opU0hD/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-opU0hD/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2805 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 90 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
Filtered Build-Depends: debhelper (>= 12), dh-exec, dh-python, python3-all-dev, python3-numpy, libhdf5-openmpi-dev, openmpi-bin, python3-setuptools, python3-h5py, quilt, cmake, pkg-config, cython3
dpkg-deb: building package 'sbuild-build-depends-bitshuffle-dummy' in '/<<BUILDDIR>>/resolver-opU0hD/apt_archive/sbuild-build-depends-bitshuffle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bitshuffle-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Sources [568 B]
Get:5 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ Packages [650 B]
Fetched 2551 B in 1s (3230 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bitshuffle build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cython3 debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism
diffstat dwz file gcc-9-base gettext gettext-base groff-base
ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libarchive13 libblas3 libbsd0 libcroco3 libcurl4 libedit2 libelf1
libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgssapi-krb5-2 libhdf5-103 libhdf5-openmpi-103 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmpdec2 libncurses6 libncursesw6 libnghttp2-14
libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps7 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libreadline8
librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl
libsz2 libtinfo5 libtinfo6 libtool libuchardet0 libuv1 libxml2 m4 man-db
mime-support ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
pkg-config po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal python3-numpy
python3-pkg-resources python3-setuptools python3-six python3.7 python3.7-dev
python3.7-minimal quilt sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libhdf5-doc
libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd
gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python-h5py-doc
gfortran python-numpy-doc python3-pytest python3-numpy-dbg
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
default-mta | mail-transport-agent graphviz procmail
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev
publicsuffix xauth libmail-sendmail-perl psmisc less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cython3 debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism
diffstat dwz file gcc-9-base gettext gettext-base groff-base
ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libarchive13 libblas3 libbsd0 libcroco3 libcurl4 libedit2 libelf1
libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgssapi-krb5-2 libhdf5-103 libhdf5-openmpi-103 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libnl-3-200
libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3
libpciaccess0 libpipeline1 libpmix2 libprocps7 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libreadline8 librhash0 librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libsz2 libtinfo5
libtool libuchardet0 libuv1 libxml2 m4 man-db mime-support
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf procps python3 python3-all python3-all-dev python3-dev
python3-distutils python3-h5py python3-lib2to3 python3-minimal python3-numpy
python3-pkg-resources python3-setuptools python3-six python3.7 python3.7-dev
python3.7-minimal quilt sbuild-build-depends-bitshuffle-dummy sensible-utils
zlib1g-dev
The following packages will be upgraded:
libncursesw6 libtinfo6
2 upgraded, 126 newly installed, 0 to remove and 88 not upgraded.
Need to get 98.5 MB of archives.
After this operation, 271 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-opU0hD/apt_archive ./ sbuild-build-depends-bitshuffle-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.6.1-1 [1248 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-3 [584 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-1 [77.2 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.4-3 [1462 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20190803-1 [104 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libreadline8 armhf 8.0-3 [138 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-3 [1673 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-3 [340 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.2.1-4+rpi1 [192 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20190324-1 [78.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.0p1-4 [692 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.3.3-4 [270 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.65.3-1 [300 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.30.1-1 [102 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.5.0-1 [14.1 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.5.3 [1036 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2 [25.3 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf diffstat armhf 1.62-1 [29.9 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 24.0-2 [44.1 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 24.0-2 [20.5 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-4+rpi1 [231 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-1 [128 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1259 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-9 [387 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libhwloc5 armhf 1.11.13-1+rpi1 [87.4 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.7 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 1.11.13-1+rpi1 [16.1 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.4-1 [433 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 3.1.3-11+rpi1 [1813 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1306 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 3.1.3-11+rpi1 [164 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 24.0-2 [187 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-9 [159 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 1.11.13-1+rpi1 [143 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 3.1.3-11+rpi1 [197 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 3.1.3-11+rpi1 [964 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-dev armhf 1.10.4+repack-10 [2181 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.4-3 [1251 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.4-3 [47.2 MB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.4-3 [513 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.3-1 [1064 B]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.1.0-1 [154 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.16.2-1 [1873 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py armhf 2.9.0-3 [673 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.1.0-1 [307 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf quilt all 0.65-3 [318 kB]
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Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libpciaccess0:armhf (0.14-1) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
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Setting up libglib2.0-0:armhf (2.60.6-2) ...
No schema files found: doing nothing.
Setting up libprocps7:armhf (2:3.3.15-2) ...
Setting up libreadline8:armhf (8.0-3) ...
Setting up libnghttp2-14:armhf (1.39.2-1) ...
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Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.37-5) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.30.1-1) ...
Setting up libexpat1-dev:armhf (2.2.7-1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up diffstat (1.62-1) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up pkg-config (0.29-6) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libltdl7:armhf (2.4.6-9) ...
Setting up libevent-core-2.1-6:armhf (2.1.8-stable-4) ...
Setting up libevent-2.1-6:armhf (2.1.8-stable-4) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-2) ...
Setting up librhash0:armhf (1.3.8-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up procps (2:3.3.15-2) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up openmpi-common (3.1.3-11+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.13.4-1) ...
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Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up gcc-9-base:armhf (9.2.1-4+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.5.0-1) ...
Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ...
Setting up libpython3.7-stdlib:armhf (3.7.4-3) ...
Setting up libpython3.7:armhf (3.7.4-3) ...
Setting up libtool (2.4.6-9) ...
Setting up libarchive13:armhf (3.3.3-4) ...
Setting up libhwloc5:armhf (1.11.13-1+rpi1) ...
Setting up libpython3.7-dev:armhf (3.7.4-3) ...
Setting up libedit2:armhf (3.1-20190324-1) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libhwloc-plugins:armhf (1.11.13-1+rpi1) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libgfortran5:armhf (9.2.1-4+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
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Setting up groff-base (1.22.4-3) ...
Setting up libcurl4:armhf (7.65.3-1) ...
Setting up libpython3-stdlib:armhf (3.7.3-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.4-3) ...
Setting up libibverbs1:armhf (24.0-2) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libpython3-dev:armhf (3.7.3-1) ...
Setting up libpmix2:armhf (3.1.4-1) ...
Setting up ibverbs-providers:armhf (24.0-2) ...
Setting up openssh-client (1:8.0p1-4) ...
Setting up libopenmpi3:armhf (3.1.3-11+rpi1) ...
Setting up python3 (3.7.3-1) ...
Setting up quilt (0.65-3) ...
Setting up man-db (2.8.6.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.4-3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.12.0-1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-9) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ...
Setting up libpython3-all-dev:armhf (3.7.3-1) ...
Setting up libhdf5-103:armhf (1.10.4+repack-10) ...
Setting up cython3 (0.29.2-2) ...
Setting up cmake (3.13.4-1) ...
Setting up libhwloc-dev:armhf (1.11.13-1+rpi1) ...
Setting up python3-lib2to3 (3.7.4-3) ...
Setting up openmpi-bin (3.1.3-11+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up python3-pkg-resources (41.1.0-1) ...
Setting up python3-distutils (3.7.4-3) ...
Setting up dh-python (4.20190722) ...
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up python3-setuptools (41.1.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.3-1) ...
Setting up libibverbs-dev:armhf (24.0-2) ...
Setting up python3-dev (3.7.3-1) ...
Setting up python3-numpy (1:1.16.2-1) ...
Setting up libopenmpi-dev:armhf (3.1.3-11+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up python3-all-dev (3.7.3-1) ...
Setting up python3-h5py (2.9.0-3) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.5.0-1) ...
Setting up debhelper (12.5.3) ...
Setting up dh-exec (0.23.2) ...
Setting up sbuild-build-depends-bitshuffle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 cython3_0.29.2-2 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.5.3 debianutils_4.8.6.1 dh-autoreconf_19 dh-exec_0.23.2 dh-python_4.20190722 dh-strip-nondeterminism_1.5.0-1 diffstat_1.62-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.37-5 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gcc-9-base_9.2.1-4+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 ibverbs-providers_24.0-2 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.13-1 libcurl4_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libedit2_3.1-20190324-1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.7-1 libexpat1-dev_2.2.7-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_9.2.1-4+rpi1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-6+b1 libhdf5-103_1.10.4+repack-10 libhdf5-openmpi-103_1.10.4+repack-10 libhdf5-openmpi-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libhwloc-dev_1.11.13-1+rpi1 libhwloc-plugins_1.11.13-1+rpi1 libhwloc5_1.11.13-1+rpi1 libibverbs-dev_24.0-2 libibverbs1_24.0-2 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 libltdl-dev_2.4.6-9 libltdl7_2.4.6-9 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libopenmpi-dev_3.1.3-11+rpi1 libopenmpi3_3.1.3-11+rpi1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpmix2_3.1.4-1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-all-dev_3.7.3-1 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.4-3 libpython3.7-dev_3.7.4-3 libpython3.7-minimal_3.7.4-3 libpython3.7-stdlib_3.7.4-3 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_241-5+rpi1 libsz2_1.0.4-1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libuv1_1.30.1-1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17 mime-support_3.63 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11+rpi1 openmpi-common_3.1.3-11+rpi1 openssh-client_1:8.0p1-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.15-2 python3_3.7.3-1 python3-all_3.7.3-1 python3-all-dev_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.4-3 python3-h5py_2.9.0-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3-numpy_1:1.16.2-1 python3-pkg-resources_41.1.0-1 python3-setuptools_41.1.0-1 python3-six_1.12.0-1 python3.7_3.7.4-3 python3.7-dev_3.7.4-3 python3.7-minimal_3.7.4-3 quilt_0.65-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-bitshuffle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 20 17:45:05 2019 UTC
gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847
gpgv: issuer "debian@alteholz.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bitshuffle_0.3.5-1.dsc
dpkg-source: info: extracting bitshuffle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz
dpkg-source: info: unpacking bitshuffle_0.3.5-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-old-api.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c5ede471-55cc-4a8e-b073-0eef6176d483
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bitshuffle
dpkg-buildpackage: info: source version 0.3.5-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
copying bitshuffle/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/make_regression_tdata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_ext.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_regression.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
copying bitshuffle/tests/test_h5plugin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
copying bitshuffle/tests/data/regression_0.1.3.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/data
running build_ext
Compiling bitshuffle/ext.pyx because it changed.
Compiling bitshuffle/h5.pyx because it changed.
[1/2] Cythonizing bitshuffle/ext.pyx
[2/2] Cythonizing bitshuffle/h5.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/bitshuffle
creating build/temp.linux-armhf-3.7/src
creating build/temp.linux-armhf-3.7/lz4
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c bitshuffle/ext.c -o build/temp.linux-armhf-3.7/bitshuffle/ext.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bitshuffle/ext.c:656:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
bitshuffle/ext.c: In function '__pyx_pf_10bitshuffle_3ext_using_NEON':
bitshuffle/ext.c:2262:16: warning: implicit declaration of function 'bshuf_using_NEON'; did you mean 'bshuf_using_AVX2'? [-Wimplicit-function-declaration]
__pyx_t_1 = (bshuf_using_NEON() != 0);
^~~~~~~~~~~~~~~~
bshuf_using_AVX2
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/ext.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/ext.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.h5' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c bitshuffle/h5.c -o build/temp.linux-armhf-3.7/bitshuffle/h5.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/bitshuffle/h5.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/h5.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5bshuf' extension
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5plugin.c -o build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bshuf_h5filter.c -o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle.c -o build/temp.linux-armhf-3.7/src/bitshuffle.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/bitshuffle_core.c -o build/temp.linux-armhf-3.7/src/bitshuffle_core.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/iochain.c -o build/temp.linux-armhf-3.7/src/iochain.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -Ilz4/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lz4/lz4.c -o build/temp.linux-armhf-3.7/lz4/lz4.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/bshuf_h5plugin.o build/temp.linux-armhf-3.7/src/bshuf_h5filter.o build/temp.linux-armhf-3.7/src/bitshuffle.o build/temp.linux-armhf-3.7/src/bitshuffle_core.o build/temp.linux-armhf-3.7/src/iochain.o build/temp.linux-armhf-3.7/lz4/lz4.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-37m-arm-linux-gnueabihf.so -fopenmp
building 'bitshuffle.plugin.libh5LZF' extension
creating build/temp.linux-armhf-3.7/lzf
creating build/temp.linux-armhf-3.7/lzf/lzf
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c src/lzf_h5plugin.c -o build/temp.linux-armhf-3.7/src/lzf_h5plugin.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf_filter.c -o build/temp.linux-armhf-3.7/lzf/lzf_filter.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
lzf/lzf_filter.c: In function 'register_lzf':
lzf/lzf_filter.c:85:9: warning: initialization of 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion]
"lzf",
^~~~~
lzf/lzf_filter.c:85:9: note: (near initialization for 'filter_class.id')
lzf/lzf_filter.c:86:9: warning: initialization of 'unsigned int' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
NULL,
^~~~
lzf/lzf_filter.c:86:9: note: (near initialization for 'filter_class.encoder_present')
lzf/lzf_filter.c:87:9: warning: initialization of 'unsigned int' from 'herr_t (*)(hid_t, hid_t, hid_t)' {aka 'int (*)(long long int, long long int, long long int)'} makes integer from pointer without a cast [-Wint-conversion]
(H5Z_set_local_func_t)(lzf_set_local),
^
lzf/lzf_filter.c:87:9: note: (near initialization for 'filter_class.decoder_present')
lzf/lzf_filter.c:88:9: warning: initialization of 'const char *' from incompatible pointer type 'size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)' {aka 'unsigned int (*)(unsigned int, unsigned int, const unsigned int *, unsigned int, unsigned int *, void **)'} [-Wincompatible-pointer-types]
(H5Z_func_t)(lzf_filter)
^
lzf/lzf_filter.c:88:9: note: (near initialization for 'filter_class.name')
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_c.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -Ilzf/lzf/ -I/usr/include/openmpi -I/usr/include/hdf5/openmpi -I/usr/include/python3.7m -c lzf/lzf/lzf_d.c -o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -fno-strict-aliasing -ffast-math -std=c99 -fPIC -O3 -march=native -fopenmp
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/lzf_h5plugin.o build/temp.linux-armhf-3.7/lzf/lzf_filter.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_c.o build/temp.linux-armhf-3.7/lzf/lzf/lzf_d.o -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-37m-arm-linux-gnueabihf.so -fopenmp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/bitshuffle/h5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build; python3.7 -m unittest discover -v
test_circle (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_circle_with_compression (bitshuffle.tests.test_ext.TestBitShuffleCircle) ... ok
test_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_trans_byte_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_AVX (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_SSE (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_untrans_bit_elem_scal (bitshuffle.tests.test_ext.TestOddLengths) ... ok
test_00_copy (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01a_trans_byte_elem_scal_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01b_trans_byte_elem_scal_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01c_trans_byte_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01d_trans_byte_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01e_trans_byte_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01f_trans_byte_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01g_trans_byte_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01h_trans_byte_elem_96 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_01i_trans_byte_elem_80 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03a_trans_bit_byte (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03d_trans_bit_byte_SSE (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03f_trans_bit_byte_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_03g_trans_bit_byte_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04a_trans_bit_elem_AVX (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04b_trans_bit_elem_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04c_trans_bit_elem_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04d_trans_bit_elem_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04e_trans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04f_trans_bit_elem_SSE_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_04g_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06a_untrans_bit_elem_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06b_untrans_bit_elem_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06c_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06d_untrans_bit_elem_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06e_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06f_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_06g_untrans_bit_elem_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07a_trans_byte_bitrow_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07b_trans_byte_bitrow_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_07c_trans_byte_bitrow_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08a_shuffle_bit_eight_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08b_shuffle_bit_eight_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08c_shuffle_bit_eight_AVX_32 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08d_shuffle_bit_eight_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08e_shuffle_bit_eight_AVX_16 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_08f_shuffle_bit_eight_AVX_128 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09a_trans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09b_trans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09c_trans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09d_untrans_bit_elem_scal_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09e_untrans_bit_elem_SSE_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_09f_untrans_bit_elem_AVX_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10a_bitshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10b_bitunshuffle_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10c_compress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_10d_decompress_64 (bitshuffle.tests.test_ext.TestProfile) ... ok
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
#000: ../../../src/H5Pocpl.c line 1027 in H5Pget_filter_by_id2(): can't find object for ID
major: Object atom
minor: Unable to find atom information (already closed?)
#001: ../../../src/H5Pint.c line 3822 in H5P_object_verify(): property list is not a member of the class
major: Property lists
minor: Unable to register new atom
#002: ../../../src/H5Pint.c line 3772 in H5P_isa_class(): not a property list
major: Invalid arguments to routine
minor: Inappropriate type
ERROR
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
#000: ../../../src/H5Pocpl.c line 1027 in H5Pget_filter_by_id2(): can't find object for ID
major: Object atom
minor: Unable to find atom information (already closed?)
#001: ../../../src/H5Pint.c line 3822 in H5P_object_verify(): property list is not a member of the class
major: Property lists
minor: Unable to register new atom
#002: ../../../src/H5Pint.c line 3772 in H5P_isa_class(): not a property list
major: Invalid arguments to routine
minor: Inappropriate type
ERROR
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
#000: ../../../src/H5Pocpl.c line 1027 in H5Pget_filter_by_id2(): can't find object for ID
major: Object atom
minor: Unable to find atom information (already closed?)
#001: ../../../src/H5Pint.c line 3822 in H5P_object_verify(): property list is not a member of the class
major: Property lists
minor: Unable to register new atom
#002: ../../../src/H5Pint.c line 3772 in H5P_isa_class(): not a property list
major: Invalid arguments to routine
minor: Inappropriate type
ERROR
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... ok
test_regression (bitshuffle.tests.test_regression.TestAll) ... ok
======================================================================
ERROR: test_filter (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py", line 30, in test_filter
filter_opts=None)
File "bitshuffle/h5.pyx", line 175, in bitshuffle.h5.create_dataset
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5d.pyx", line 76, in h5py.h5d.create
ValueError: Unable to create dataset (error during user callback)
======================================================================
ERROR: test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py", line 50, in test_with_block_size
filter_opts=((680,), ()),
File "bitshuffle/h5.pyx", line 175, in bitshuffle.h5.create_dataset
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5d.pyx", line 76, in h5py.h5d.create
ValueError: Unable to create dataset (error during user callback)
======================================================================
ERROR: test_with_compression (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build/bitshuffle/tests/test_h5filter.py", line 72, in test_with_compression
filter_opts=((0, h5.H5_COMPRESS_LZ4),),
File "bitshuffle/h5.pyx", line 175, in bitshuffle.h5.create_dataset
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5d.pyx", line 76, in h5py.h5d.create
ValueError: Unable to create dataset (error during user callback)
----------------------------------------------------------------------
Ran 61 tests in 14.570s
FAILED (errors=3)
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bitshuffle/build; python3.7 -m unittest discover -v
dh_auto_test: pybuild --test -i python{version} -p 3.7 returned exit code 13
make: *** [debian/rules:25: build-arch] Error 255
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-08-29T11:29:51Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 262
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1741
Job: bitshuffle_0.3.5-1
Machine Architecture: armhf
Package: bitshuffle
Package-Time: 2065
Source-Version: 0.3.5-1
Space: 0
Status: failed
Version: 0.3.5-1
--------------------------------------------------------------------------------
Finished at 2019-08-29T11:29:51Z
Build needed 00:00:00, 0k disc space