Raspbian Package Auto-Building

Build log for bedtools (2.24.0-2) on armhf

bedtools2.24.0-2armhf → 2015-07-22 05:59:26

sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ bedtools 2.24.0-2 (armhf)                                  22 Jul 2015 05:30 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: bedtools
Version: 2.24.0-2
Source Version: 2.24.0-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/bedtools-6kCQPi/bedtools-2.24.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bedtools-6kCQPi' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-c8d2b843-f419-4a22-8cba-45e30a2e8df9' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8120 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.0 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.1 MB in 33s (538 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bedtools.git
Need to get 18.4 MB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main bedtools 2.24.0-2 (dsc) [2071 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main bedtools 2.24.0-2 (tar) [18.4 MB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bedtools 2.24.0-2 (diff) [9256 B]
Fetched 18.4 MB in 4s (4276 kB/s)
Download complete and in download only mode

Check architectures
───────────────────


Check dependencies
──────────────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-z4mwiA/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 84 not upgraded.
Need to get 0 B/812 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python, zlib1g-dev, samtools
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python, zlib1g-dev, samtools
dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-Za2m3t/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bedtools build dependencies (apt-based resolver)                     │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
  libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0 libmagic1
  libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
  po-debconf python python-minimal python2.7 python2.7-minimal samtools
  zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
  libmail-box-perl python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info xdg-user-dirs xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
  libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0 libmagic1
  libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
  po-debconf python python-minimal python2.7 python2.7-minimal samtools
  sbuild-build-depends-bedtools-dummy zlib1g-dev
0 upgraded, 31 newly installed, 0 to remove and 84 not upgraded.
Need to get 14.3 MB/14.3 MB of archives.
After this operation, 44.6 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.4-1 [31.5 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-3 [380 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-3 [1163 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.58 [36.0 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.10.2-1 [389 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-3 [1815 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-3 [259 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.4-1 [117 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.4-1 [1168 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150628 [817 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main samtools armhf 0.1.19-1 [523 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 14.3 MB in 3s (4007 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.4.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.0-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.0.2-5_armhf.deb ...
Unpacking man-db (2.7.0.2-5) ...
Selecting previously unselected package libasprintf0c2:armhf.
Preparing to unpack .../libasprintf0c2_0.19.4-1_armhf.deb ...
Unpacking libasprintf0c2:armhf (0.19.4-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.22+15-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.22+15-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.10-3_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.10-3) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.10-3_armhf.deb ...
Unpacking python2.7-minimal (2.7.10-3) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.9-1_armhf.deb ...
Unpacking python-minimal (2.7.9-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.58_all.deb ...
Unpacking mime-support (3.58) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-6_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-6) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.1-2_armhf.deb ...
Unpacking libffi6:armhf (3.1-2) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.10.2-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.10.2-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.2d-1_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.2d-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.10-3_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.10-3) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.10-3_armhf.deb ...
Unpacking python2.7 (2.7.10-3) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.9-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.9-1) ...
Setting up libpython2.7-minimal:armhf (2.7.10-3) ...
Setting up python2.7-minimal (2.7.10-3) ...
Setting up python-minimal (2.7.9-1) ...
Selecting previously unselected package python.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13398 files and directories currently installed.)
Preparing to unpack .../python_2.7.9-1_armhf.deb ...
Unpacking python (2.7.9-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.44.1-1.1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.44.1-1.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.22+15-2_armhf.deb ...
Unpacking file (1:5.22+15-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.4-1_armhf.deb ...
Unpacking gettext-base (0.19.4-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.4-1_armhf.deb ...
Unpacking gettext (0.19.4-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.2) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150628_all.deb ...
Unpacking debhelper (9.20150628) ...
Selecting previously unselected package samtools.
Preparing to unpack .../samtools_0.1.19-1_armhf.deb ...
Unpacking samtools (0.1.19-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.4-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up mime-support (3.58) ...
Setting up libexpat1:armhf (2.1.0-6) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libsqlite3-0:armhf (3.8.10.2-1) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.10-3) ...
Setting up python2.7 (2.7.10-3) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.4-1) ...
Setting up gettext (0.19.4-1) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150628) ...
Setting up samtools (0.1.19-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150628 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.4-1 gettext-base_0.19.4-1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10 libasprintf0c2_0.19.4-1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libisl10_0.12.2-2 libklibc_2.0.4-2+rpi1 libkmod2_18-3 liblocale-gettext-perl_1.05-8+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libreadline6_6.3-8 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-6 libsqlite3-0_3.8.10.2-1 libss2_1.42.12-1.1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-17 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1 libubsan0_4.9.2-10 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.58 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-3 python2.7-minimal_2.7.10-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 samtools_0.1.19-1 sbuild-build-depends-bedtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 udev_215-17 util-linux_2.25.2-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Jul 16 12:38:26 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bedtools_2.24.0-2.dsc
dpkg-source: info: extracting bedtools in bedtools-2.24.0
dpkg-source: info: unpacking bedtools_2.24.0.orig.tar.gz
dpkg-source: info: unpacking bedtools_2.24.0-2.debian.tar.xz
dpkg-source: info: applying gzstream.h.patch
dpkg-source: info: applying fix_test_script.patch
dpkg-source: info: applying 0001-settle-on-uint32_t-signature-for-QuickString.-Resolv.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-c8d2b843-f419-4a22-8cba-45e30a2e8df9
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package bedtools
dpkg-buildpackage: source version 2.24.0-2
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build bedtools-2.24.0
dpkg-buildpackage: host architecture armhf
dpkg-source: info: using options from bedtools-2.24.0/debian/source/options: --single-debian-patch
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
	make -j1 clean
make[1]: Entering directory '/«PKGBUILDDIR»'
 * Cleaning-up BamTools API
 * Cleaning up.
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_clean
	rm -f debian/bedtools.substvars
	rm -f debian/bedtools.*.debhelper
	rm -rf debian/bedtools/
	rm -f debian/bedtools-test.substvars
	rm -f debian/bedtools-test.*.debhelper
	rm -rf debian/bedtools-test/
	rm -rf debian/.debhelper/
	rm -f debian/*.debhelper.log
	rm -f debian/files
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
	rm -f *-stamp
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/«PKGBUILDDIR»'
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.24.0
CURRENT_VERSION  = 
Updating version file.
 * Creating BamTools API
- Building in src/utils/bedFile
  * compiling bedFile.cpp
- Building in src/utils/BinTree
  * compiling BinTree.cpp
- Building in src/utils/version
  * compiling version.cpp
- Building in src/utils/bedGraphFile
  * compiling bedGraphFile.cpp
- Building in src/utils/chromsweep
  * compiling chromsweep.cpp
- Building in src/utils/Contexts
  * compiling ContextBase.cpp
  * compiling ContextIntersect.cpp
  * compiling ContextFisher.cpp
  * compiling ContextMap.cpp
  * compiling ContextSample.cpp
  * compiling ContextSpacing.cpp
  * compiling ContextMerge.cpp
  * compiling ContextJaccard.cpp
  * compiling ContextClosest.cpp
  * compiling ContextSubtract.cpp
  * compiling ContextCoverage.cpp
- Building in src/utils/FileRecordTools
  * compiling FileRecordMgr.cpp
  * compiling FileRecordMergeMgr.cpp
- Building in FileReaders
  * compiling FileReader.cpp
  * compiling SingleLineDelimTextFileReader.cpp
  * compiling BamFileReader.cpp
  * compiling BufferedStreamMgr.cpp
  * compiling InputStreamMgr.cpp
- Building in Records
  * compiling Record.cpp
  * compiling EmptyRecord.cpp
  * compiling Bed3Interval.cpp
  * compiling Bed4Interval.cpp
  * compiling BedGraphInterval.cpp
  * compiling Bed5Interval.cpp
  * compiling Bed6Interval.cpp
  * compiling BedPlusInterval.cpp
  * compiling Bed12Interval.cpp
  * compiling BamRecord.cpp
  * compiling VcfRecord.cpp
  * compiling GffRecord.cpp
  * compiling BlockMgr.cpp
  * compiling StrandQueue.cpp
  * compiling RecordMgr.cpp
  * compiling RecordList.cpp
  * compiling RecordKeyList.cpp
  * compiling RecordKeyVector.cpp
- Building in src/utils/FileRecordTools/FileReaders
make[2]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools/Records
make[2]: Nothing to be done for 'all'.
- Building in src/utils/general
  * compiling QuickString.cpp
  * compiling ParseTools.cpp
ParseTools.cpp: In function 'int str2chrPos(const char*, size_t)':
ParseTools.cpp:31:7: warning: unused variable 'hasExponent' [-Wunused-variable]
  bool hasExponent = false;
       ^
  * compiling PushBackStreamBuf.cpp
  * compiling CompressionTools.cpp
  * compiling Tokenizer.cpp
  * compiling CommonHelp.cpp
- Building in src/utils/gzstream
g++ -Wall -O2 -D_FILE_OFFSET_BITS=64 -fPIC -Isrc/utils/bedFile -Isrc/utils/BinTree -Isrc/utils/version -Isrc/utils/bedGraphFile -Isrc/utils/chromsweep -Isrc/utils/Contexts -Isrc/utils/FileRecordTools -Isrc/utils/FileRecordTools/FileReaders -Isrc/utils/FileRecordTools/Records -Isrc/utils/general -Isrc/utils/gzstream -Isrc/utils/fileType -Isrc/utils/bedFilePE -Isrc/utils/KeyListOps -Isrc/utils/NewChromsweep -Isrc/utils/sequenceUtilities -Isrc/utils/tabFile -Isrc/utils/BamTools -Isrc/utils/BamTools/include -Isrc/utils/BamTools/src -Isrc/utils/BamTools-Ancillary -Isrc/utils/BlockedIntervals -Isrc/utils/Fasta -Isrc/utils/VectorOps -Isrc/utils/GenomeFile -Isrc/utils/RecordOutputMgr -Isrc/utils/ToolBase -Isrc/utils/aux  -c -o ../../../obj//gzstream.o gzstream.C -I.
- Building in src/utils/fileType
  * compiling fileType.cpp
  * compiling FileRecordTypeChecker.cpp
- Building in src/utils/bedFilePE
  * compiling bedFilePE.cpp
- Building in src/utils/KeyListOps
  * compiling KeyListOps.cpp
  * compiling KeyListOpsMethods.cpp
- Building in src/utils/NewChromsweep
  * compiling NewChromsweep.cpp
  * compiling CloseSweep.cpp
- Building in src/utils/sequenceUtilities
  * compiling sequenceUtils.cpp
- Building in src/utils/tabFile
  * compiling tabFile.cpp
- Building in src/utils/BamTools
 * compiling BamAlignment.cpp
 * compiling BamMultiReader.cpp
 * compiling BamReader.cpp
 * compiling BamWriter.cpp
 * compiling SamHeader.cpp
 * compiling SamProgram.cpp
 * compiling SamProgramChain.cpp
 * compiling SamReadGroup.cpp
 * compiling SamReadGroupDictionary.cpp
 * compiling SamSequence.cpp
 * compiling SamSequenceDictionary.cpp
 * compiling BamHeader_p.cpp
 * compiling BamMultiReader_p.cpp
 * compiling BamRandomAccessController_p.cpp
 * compiling BamReader_p.cpp
 * compiling BamWriter_p.cpp
 * compiling BamIndexFactory_p.cpp
 * compiling BamStandardIndex_p.cpp
 * compiling BamToolsIndex_p.cpp
 * compiling BamDeviceFactory_p.cpp
 * compiling BamFile_p.cpp
 * compiling BamFtp_p.cpp
 * compiling BamHttp_p.cpp
 * compiling BamPipe_p.cpp
 * compiling BgzfStream_p.cpp
 * compiling ByteArray_p.cpp
 * compiling HostAddress_p.cpp
 * compiling HostInfo_p.cpp
 * compiling HttpHeader_p.cpp
 * compiling ILocalIODevice_p.cpp
 * compiling RollingBuffer_p.cpp
 * compiling TcpSocketEngine_p.cpp
 * compiling TcpSocketEngine_unix_p.cpp
 * compiling TcpSocket_p.cpp
 * compiling SamFormatParser_p.cpp
 * compiling SamFormatPrinter_p.cpp
 * compiling SamHeaderValidator_p.cpp
 * compiling BamException_p.cpp
 * linking lib/libbamtools.a
ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o
ranlib lib/libbamtools.a
- Building in src/utils/BamTools-Ancillary
  * compiling BamAncillary.cpp
  * compiling BamAncillary.cpp
- Building in src/utils/BlockedIntervals
  * compiling BlockedIntervals.cpp
- Building in src/utils/Fasta
  * compiling Fasta.cpp
  * compiling split.cpp
- Building in src/utils/VectorOps
  * compiling VectorOps.cpp
- Building in src/utils/GenomeFile
  * compiling GenomeFile.cpp
GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
                     long c2;
                          ^
  * compiling NewGenomeFile.cpp
- Building in src/utils/RecordOutputMgr
  * compiling RecordOutputMgr.cpp
- Building in src/utils/ToolBase
  * compiling ToolBase.cpp
- Building in src/utils/aux
  * compiling BedtoolsDriver.cpp
- Building in src/annotateBed
  * compiling annotateMain.cpp
annotateMain.cpp: In function 'int annotate_main(int, char**)':
annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
     bool haveTitles     = false;
          ^
  * compiling annotateBed.cpp
- Building in src/bamToBed
  * compiling bamToBed.cpp
bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
     bool useAlignmentScore = false;
          ^
- Building in src/bamToFastq
  * compiling bamToFastqMain.cpp
bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
     bool haveFastq2    = false;
          ^
  * compiling bamToFastq.cpp
- Building in src/bedToBam
  * compiling bedToBam.cpp
bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
     bool haveMapQual     = false;
          ^
- Building in src/bedpeToBam
  * compiling bedpeToBam.cpp
bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
     bool haveMapQual     = false;
          ^
- Building in src/bedToIgv
  * compiling bedToIgv.cpp
- Building in src/bed12ToBed6
  * compiling bed12ToBed6.cpp
- Building in src/closestFile
  * compiling closestHelp.cpp
  * compiling closestFile.cpp
- Building in src/clusterBed
  * compiling clusterMain.cpp
clusterMain.cpp: In function 'int cluster_main(int, char**)':
clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
     bool haveMaxDistance = false;
          ^
  * compiling clusterBed.cpp
- Building in src/complementBed
  * compiling complementMain.cpp
  * compiling complementBed.cpp
- Building in src/coverageFile
  * compiling coverageHelp.cpp
  * compiling coverageFile.cpp
- Building in src/expand
  * compiling expand.cpp
- Building in src/fastaFromBed
  * compiling fastaFromBedMain.cpp
  * compiling fastaFromBed.cpp
- Building in src/flankBed
  * compiling flankBedMain.cpp
  * compiling flankBed.cpp
- Building in src/genomeCoverageBed
  * compiling genomeCoverageMain.cpp
  * compiling genomeCoverageBed.cpp
- Building in src/getOverlap
  * compiling getOverlap.cpp
getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
     bool haveColumns = false;
          ^
- Building in src/groupBy
  * compiling groupBy.cpp
groupBy.cpp: In function 'int groupby_main(int, char**)':
groupBy.cpp:80:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
     bool haveOps           = true;
          ^
- Building in src/intersectFile
  * compiling intersectHelp.cpp
  * compiling intersectFile.cpp
- Building in src/fisher
  * compiling fisherHelp.cpp
  * compiling fisher.cpp
  * compiling kfunc.cpp
- Building in src/jaccard
  * compiling jaccardHelp.cpp
  * compiling jaccard.cpp
- Building in src/linksBed
  * compiling linksMain.cpp
  * compiling linksBed.cpp
- Building in src/maskFastaFromBed
  * compiling maskFastaFromBedMain.cpp
  * compiling maskFastaFromBed.cpp
- Building in src/mapFile
  * compiling mapHelp.cpp
  * compiling mapFile.cpp
- Building in src/mergeFile
  * compiling mergeHelp.cpp
  * compiling mergeFile.cpp
- Building in src/multiBamCov
  * compiling multiBamCovMain.cpp
multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
     bool haveBed           = false;
          ^
multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
     bool haveBams          = false;
          ^
multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
     bool haveFraction       = false;
          ^
  * compiling multiBamCov.cpp
- Building in src/multiIntersectBed
  * compiling multiIntersectBedMain.cpp
multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
     bool haveFiles         = false;
          ^
multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
     bool haveGenome        = false;
          ^
multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
     bool haveFiller        = true;
          ^
  * compiling multiIntersectBed.cpp
- Building in src/nekSandbox1
  * compiling nekSandboxMain.cpp
- Building in src/nucBed
  * compiling nucBedMain.cpp
  * compiling nucBed.cpp
- Building in src/pairToBed
  * compiling pairToBedMain.cpp
pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
     bool haveFraction       = false;
          ^
  * compiling pairToBed.cpp
pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
     CHRPOS spanLength = 0;
            ^
pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
     int spanLength = 0;
         ^
- Building in src/pairToPair
  * compiling pairToPairMain.cpp
pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
     bool haveFraction = false;
          ^
  * compiling pairToPair.cpp
pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
         bool found1 = false;
              ^
pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
         bool found2 = false;
              ^
- Building in src/randomBed
  * compiling randomBedMain.cpp
  * compiling randomBed.cpp
- Building in src/regressTest
compiling RegressTest.cpp
compiling regressTestMain.cpp
- Building in src/reldist
  * compiling reldistMain.cpp
  * compiling reldist.cpp
reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
                (float) freqItr->second / (float) _tot_queries);
                                                              ^
reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
- Building in src/sampleFile
  * compiling sampleHelp.cpp
  * compiling sampleFile.cpp
- Building in src/shuffleBed
  * compiling shuffleBedMain.cpp
  * compiling shuffleBed.cpp
- Building in src/slopBed
  * compiling slopBedMain.cpp
  * compiling slopBed.cpp
slopBed.cpp: In member function 'void BedSlop::AddSlop(BED&)':
slopBed.cpp:86:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if ( ((int)bed.end + (int)_leftSlop) <= chromSize )
                                              ^
slopBed.cpp:100:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if ( ((int)bed.end + (int)_rightSlop) <= chromSize )
                                               ^
- Building in src/sortBed
  * compiling sortMain.cpp
  * compiling sortBed.cpp
- Building in src/spacingFile
  * compiling spacingHelp.cpp
  * compiling spacingFile.cpp
- Building in src/split
  * compiling splitBed.cpp
  * compiling splitBedMain.cpp
- Building in src/subtractFile
  * compiling subtractHelp.cpp
  * compiling subtractFile.cpp
- Building in src/tagBam
  * compiling tagBamMain.cpp
  * compiling tagBam.cpp
- Building in src/unionBedGraphs
  * compiling unionBedGraphsMain.cpp
unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
     bool haveFiles         = false;
          ^
unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
     bool haveGenome        = false;
          ^
unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
     bool haveFiller        = true;
          ^
  * compiling unionBedGraphs.cpp
- Building in src/windowBed
  * compiling windowMain.cpp
  * compiling windowBed.cpp
- Building in src/windowMaker
  * compiling windowMakerMain.cpp
  * compiling windowMaker.cpp
- Building main bedtools binary.
done.
- Creating executables for old CLI.
done.
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_auto_test -a
	make -j1 test
make[1]: Entering directory '/«PKGBUILDDIR»'
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.24.0
CURRENT_VERSION  = v2.24.0
 * Creating BamTools API
- Building in src/utils/bedFile
make[2]: '../../../obj//bedFile.o' is up to date.
- Building in src/utils/BinTree
make[2]: '../../../obj//BinTree.o' is up to date.
- Building in src/utils/version
make[2]: Nothing to be done for 'all'.
- Building in src/utils/bedGraphFile
make[2]: '../../../obj//bedGraphFile.o' is up to date.
- Building in src/utils/chromsweep
make[2]: '../../../obj//chromsweep.o' is up to date.
- Building in src/utils/Contexts
make[2]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools
- Building in FileReaders
make[3]: Nothing to be done for 'all'.
- Building in Records
make[3]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools/FileReaders
make[2]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools/Records
make[2]: Nothing to be done for 'all'.
- Building in src/utils/general
make[2]: Nothing to be done for 'all'.
- Building in src/utils/gzstream
make[2]: '../../../obj//gzstream.o' is up to date.
- Building in src/utils/fileType
make[2]: Nothing to be done for 'all'.
- Building in src/utils/bedFilePE
make[2]: '../../../obj//bedFilePE.o' is up to date.
- Building in src/utils/KeyListOps
make[2]: Nothing to be done for 'all'.
- Building in src/utils/NewChromsweep
make[2]: Nothing to be done for 'all'.
- Building in src/utils/sequenceUtilities
make[2]: '../../../obj//sequenceUtils.o' is up to date.
- Building in src/utils/tabFile
make[2]: '../../../obj//tabFile.o' is up to date.
- Building in src/utils/BamTools
make[2]: Nothing to be done for 'all'.
- Building in src/utils/BamTools-Ancillary
make[2]: Nothing to be done for 'all'.
- Building in src/utils/BlockedIntervals
make[2]: Nothing to be done for 'all'.
- Building in src/utils/Fasta
make[2]: Nothing to be done for 'all'.
- Building in src/utils/VectorOps
make[2]: '../../../obj//VectorOps.o' is up to date.
- Building in src/utils/GenomeFile
make[2]: '../../../obj//NewGenomeFile.o' is up to date.
- Building in src/utils/RecordOutputMgr
make[2]: '../../../obj//RecordOutputMgr.o' is up to date.
- Building in src/utils/ToolBase
make[2]: '../../../obj//ToolBase.o' is up to date.
- Building in src/utils/aux
make[2]: Nothing to be done for 'all'.
- Building in src/annotateBed
make[2]: Nothing to be done for 'all'.
- Building in src/bamToBed
make[2]: Nothing to be done for 'all'.
- Building in src/bamToFastq
make[2]: Nothing to be done for 'all'.
- Building in src/bedToBam
make[2]: Nothing to be done for 'all'.
- Building in src/bedpeToBam
make[2]: Nothing to be done for 'all'.
- Building in src/bedToIgv
make[2]: Nothing to be done for 'all'.
- Building in src/bed12ToBed6
make[2]: Nothing to be done for 'all'.
- Building in src/closestFile
make[2]: Nothing to be done for 'all'.
- Building in src/clusterBed
make[2]: Nothing to be done for 'all'.
- Building in src/complementBed
make[2]: Nothing to be done for 'all'.
- Building in src/coverageFile
make[2]: Nothing to be done for 'all'.
- Building in src/expand
make[2]: Nothing to be done for 'all'.
- Building in src/fastaFromBed
make[2]: Nothing to be done for 'all'.
- Building in src/flankBed
make[2]: Nothing to be done for 'all'.
- Building in src/genomeCoverageBed
make[2]: Nothing to be done for 'all'.
- Building in src/getOverlap
make[2]: Nothing to be done for 'all'.
- Building in src/groupBy
make[2]: Nothing to be done for 'all'.
- Building in src/intersectFile
make[2]: Nothing to be done for 'all'.
- Building in src/fisher
make[2]: Nothing to be done for 'all'.
- Building in src/jaccard
make[2]: Nothing to be done for 'all'.
- Building in src/linksBed
make[2]: Nothing to be done for 'all'.
- Building in src/maskFastaFromBed
make[2]: Nothing to be done for 'all'.
- Building in src/mapFile
make[2]: Nothing to be done for 'all'.
- Building in src/mergeFile
make[2]: Nothing to be done for 'all'.
- Building in src/multiBamCov
make[2]: Nothing to be done for 'all'.
- Building in src/multiIntersectBed
make[2]: Nothing to be done for 'all'.
- Building in src/nekSandbox1
make[2]: Nothing to be done for 'all'.
- Building in src/nucBed
make[2]: Nothing to be done for 'all'.
- Building in src/pairToBed
make[2]: Nothing to be done for 'all'.
- Building in src/pairToPair
make[2]: Nothing to be done for 'all'.
- Building in src/randomBed
make[2]: Nothing to be done for 'all'.
- Building in src/regressTest
compiling RegressTest.cpp
compiling regressTestMain.cpp
- Building in src/reldist
make[2]: Nothing to be done for 'all'.
- Building in src/sampleFile
make[2]: Nothing to be done for 'all'.
- Building in src/shuffleBed
make[2]: Nothing to be done for 'all'.
- Building in src/slopBed
make[2]: Nothing to be done for 'all'.
- Building in src/sortBed
make[2]: Nothing to be done for 'all'.
- Building in src/spacingFile
make[2]: Nothing to be done for 'all'.
- Building in src/split
make[2]: Nothing to be done for 'all'.
- Building in src/subtractFile
make[2]: Nothing to be done for 'all'.
- Building in src/tagBam
make[2]: Nothing to be done for 'all'.
- Building in src/unionBedGraphs
make[2]: Nothing to be done for 'all'.
- Building in src/windowBed
make[2]: Nothing to be done for 'all'.
- Building in src/windowMaker
make[2]: Nothing to be done for 'all'.
- Building main bedtools binary.
done.
- Creating executables for old CLI.
done.
 Performing general tests:
    general.t01...\c
ok
    general.t02...\c
ok
    general.t03...\c
ok
    general.t04...\c
ok
    general.t05...\c
ok
    general.t06...\c
ok
    general.t07...\c
ok
    general.t08...\c
ok
    general.t09...\c
ok
    general.t10...\c
ok
    general.t11...\c
ok
    general.t12...\c
ok
    general.t13...\c
ok
    general.t14...\c
ok
    general.15...\c
ok
    general.t16...\c
ok
    general.t17...\c
ok
    general.t18...\c
ok
    general.t19...\c
ok
    general.t20...\c
ok
    general.t21...\c
ok
    general.22...\c
ok
    general.t23...\c
ok
    general.t24...\c
ok
    general.t25...\c
ok
    general.t26...\c
ok
    general.t27...\c
ok
    general.t28...\c
ok
    general.29...\c
ok
    general.t30...\c
ok
    general.t31...\c
ok
    general.t32...\c
ok
    general.t33...\c
ok
    general.t34...\c
ok
    general.t35...\c
ok
    general.36...\c
ok
    general.t37...\c
ok
    general.t38...\c
ok
    general.t39...\c
ok
    general.t40...\c
ok
    general.t41...\c
ok
    general.t42...\c
ok
 Testing bedtools bed12tobed6:
    bed12tobed6.t1...\c
ok
    bed12tobed6.t2...\c
ok
    bed12tobed6.t3...\c
ok
    bed12tobed6.t4...\c
ok
    bed12tobed6.t5...\c
ok
 Testing bedtools bamtobed:
    bamtobed.t1...\c
ok
    bamtobed.t2...\c
ok
    bamtobed.t3...\c
ok
    bamtobed.t4...\c
ok
    bamtobed.t5...\c
ok
    bamtobed.t6...\c
ok
    bamtobed.t7...\c
ok
    bamtobed.t8...\c
ok
    bamtobed.t9...\c
ok
    bamtobed.t10...\c
ok
    bamtobed.t9...\c
ok
    bamtobed.t11...\c
ok
 Testing bedtools closest:
    closest.t1...\c
ok
    closest.t2...\c
ok
    closest.t3...\c
ok
    closest.t4...\c
ok
    closest.t5...\c
ok
    closest.t6...\c
ok
    closest.t7...\c
ok
    closest.t8...\c
ok
    closest.t9...\c
ok
    closest.t10...\c
ok
    closest.t11...\c
ok
    closest.t13...\c
ok
    closest.t14...\c
ok
    closest.t15...\c
ok
    closest.t16...\c
ok
    closest.t17...\c
ok
    closest.t18...\c
ok
    closest.t19...\c
ok
    closest.t20...\c
ok
    closest.t21...\c
ok
    closest.t22...\c
ok
    closest.t23...\c
ok
    closest.t24...\c
ok
    closest.t25...\c
ok
    closest.t26...\c
ok
    closest.t27...\c
ok
    closest.t28...\c
ok
    closest.t29...\c
ok
    closest.t30...\c
ok
    closest.t31...\c
ok
    closest.t32...\c
ok
    closest.t33...\c
ok
    closest.t34...\c
ok
    closest.t35...\c
ok
    closest.t36...\c
ok
    closest.t37...\c
ok
    closest.t38...\c
ok
    closest.t39...\c
ok
    closest.t40...\c
ok
    closest.t41...\c
ok
    closest.t42...\c
ok
    closest.t43...\c
ok
    closest.t44...\c
ok
    closest.t45...\c
ok
    closest.t46...\c
ok
    closest.t47...\c
ok
    closest.t48...\c
ok
    closest.t49...\c
ok
    closest.t50...\c
ok
    closest.t51...\c
ok
    closest.t52...\c
ok
    closest.t53...\c
ok
    closest.t54...\c
ok
    closest.t55...\c
ok
    closest.t56...\c
ok
    closest.t57...\c
ok
    closest.t58...\c
ok
    closest.t59...\c
ok

###########################################################
#  
#  CHROMOSOME SORT ORDER AND NAMING CONVENTIONS 
#
###########################################################

    closest.t01...\c
ok
    closest.t02...\c
ok
    closest.t03...\c
ok
    closest.t04...\c
ok
    closest.t05...\c
ok
    closest.t06...\c
ok
    closest.t07...\c
ok
    closest.t08...\c
ok
    closest.t09...\c
ok
    closest.t10...\c
ok
    closest.t11...\c
ok
    closest.t12...\c
ok
    closest.t13...\c
ok
    closest.t14...\c
ok
    closest.t15...\c
ok
    closest.t16...\c
ok
    closest.t17...\c
ok
    closest.t18...\c
ok
    closest.t19...\c
ok
    closest.20...\c
ok
    closest.21...\c
ok
    closest.22...\c
ok
    closest.23...\c
ok

###########################################################
#  
#  K CLOSEST HITS TESTS
#
###########################################################

    kclosest.t1...\c
ok
    kclosest.t2...\c
ok
    kclosest.t3...\c
ok
    kclosest.t4...\c
ok
    kclosest.t5...\c
ok
    kclosest.t6...\c
ok
    kclosest.t7...\c
ok
    kclosest.t8...\c
ok
    kclosest.t9...\c
ok
    kclosest.t10...\c
ok
    kclosest.t11...\c
ok
    kclosest.t12...\c
ok
    kclosest.t13...\c
ok
    kclosest.t14...\c
ok
    kclosest.t15...\c
ok
    kclosest.t16...\c
ok
    kclosest.t17...\c
ok
    kclosest.t18...\c
ok
    kclosest.t19...\c
ok
    kclosest.t20...\c
ok
    kclosest.t21...\c
ok
    kclosest.t22...\c
ok
    kclosest.t23...\c
ok
    kclosest.t24...\c
ok
    kclosest.t25...\c
ok
    kclosest.t26...\c
ok
    kclosest.t27...\c
ok
    kclosest.t28...\c
ok
    kclosest.t29...\c
ok
    kclosest.t30...\c
ok
    kclosest.t31...\c
ok
    kclosest.t32...\c
ok
    kclosest.t33...\c
ok
    kclosest.t34...\c
ok
    kclosest.t35...\c
ok
    kclosest.t36...\c
ok
    kclosest.t37...\c
ok
    kclosest.t38...\c
ok
 Testing bedtools cluster:
    cluster.t1...\c
ok
    cluster.t2...\c
ok
 Testing bedtools coverage:
    coverage.t1...\c
ok
    coverage.t2...\c
ok
    coverage.t3...\c
ok
    coverage.t4...\c
ok
    coverage.t5...\c
ok
    coverage.t6...\c
ok
    coverage.t7...\c
ok
    coverage.t8...\c
ok
    coverage.t9...\c
ok
    coverage.t10...\c
ok
 Testing bedtools expand:
    expand.t1...\c
ok
    expand.t2...\c
ok
    expand.t3...\c
ok
 Testing bedtools flank:
    flank.t1...\c
ok
    flank.t2...\c
ok
    flank.t3...\c
ok
    flank.t4...\c
ok
    flank.t5...\c
ok
    flank.t6...\c
ok
    flank.t7...\c
ok
    flank.t8...\c
ok
    flank.t9...\c
ok
    flank.t10...\c
ok
    flank.t11...\c
ok
 Testing bedtools fisher:
    fisher.t1...\c
ok
    fisher.t2...\c
ok
    fisher.t3...\c
ok
    fisher.t4...\c
ok
 Testing bedtools genomecov:
    genomecov.t1...\c
ok
    genomecov.t2...\c
ok
    genomecov.t3...\c
ok
    genomecov.t4...\c
ok
    genomecov.t5...\c
ok
    genomecov.t6...\c
ok
    genomecov.t7...\c
ok
 Testing bedtools getfasta:
    getfasta.t01...\c
ok
    getfasta.t02...\c
ok
    getfasta.t03...\c
ok
    getfasta.t04...\c
ok
    getfasta.t05...\c
ok
    getfasta.t06...\c
ok
    getfasta.t07...\c
ok
    getfasta.t08...\c
index file test.iupac.fa.fai not found, generating...
ok
    getfasta.t09...\c
index file test.iupac.fa.fai not found, generating...
ok
    getfasta.t10...\c
index file test.fa.fai not found, generating...
ok
 Testing bedtools intersect:
    intersect.t01...\c
ok
    intersect.t02...\c
ok
    intersect.t03...\c
ok
    intersect.t04...\c
ok
    intersect.t05...\c
ok
    intersect.t06...\c
ok
    intersect.t07...\c
ok
    intersect.t08...\c
ok
    intersect.t09...\c
ok
    intersect.t10...\c
ok
    intersect.t11...\c
ok
    intersect.t12...\c
ok
    intersect.t13...\c
ok
    intersect.t14...\c
ok
    intersect.t15...\c
ok
    intersect.t16...\c
ok
    intersect.t17...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t18...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t19...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t20...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t21...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t22...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t22.a...\c
ok
    intersect.t22.b...\c
ok
    intersect.t22.c...\c
ok
    intersect.t22.d...\c
ok
    intersect.t22.e...\c
ok
    intersect.t22.f...\c
ok
    intersect.t22.g...\c
ok
    intersect.t23...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t24...\c
[bam_header_read] EOF marker is absent. The input is probably truncated.
ok
    intersect.t25...\c
ok
    intersect.t26...\c
ok
    intersect.t27...\c
ok
    intersect.t28...\c
ok
    intersect.t29...\c
ok
    intersect.t30...\c
ok
    intersect.t31...\c
ok
    intersect.t32...\c
ok
    intersect.t33...\c
ok
    intersect.t34...\c
ok
    intersect.t35...\c
ok
    intersect.t36...\c
ok
    intersect.t37...\c
ok
    intersect.t38...\c
ok
    intersect.t39...\c
ok
    intersect.t40...\c
ok
    intersect.t41...\c
ok
    intersect.t42...\c
ok
    intersect.t43...\c
ok
    intersect.t44...\c
ok
    intersect.t45...\c
ok
    intersect.t46...\c
ok
    intersect.t47...\c
ok
    intersect.t48...\c
Error: Unable to open file bug223_d.vcf. Exiting.
1,4d0
< chr1	1	a	G	<DEL>	70.90
< chr1	1	a	G	<DEL>	70.90
< chr1	4	a	G	<DEL>	70.90
< chr1	4	a	G	<DEL>	70.90
fail
    intersect.t49...\c
ok
    intersect.t50...\c
ok

###########################################################
#  
#  MULTIPLE DATABASE INTERSECTION
#
###########################################################

    intersect.t01...\c
ok
    intersect.t02...\c
ok
    intersect.t03...\c
ok
    intersect.t04...\c
ok
    intersect.t05...\c
ok
    intersect.t06...\c
ok
    intersect.t07...\c
ok
    intersect.t08...\c
ok
    intersect.t09...\c
ok
    intersect.t10...\c
ok
    intersect.t11...\c
ok
    intersect.t12...\c
ok
    intersect.t13...\c
ok
    intersect.t13...\c
ok
    intersect.t14...\c
ok
    intersect.t15...\c
ok
    intersect.t16...\c
ok
    intersect.t17...\c
ok
    intersect.t18...\c
ok
    intersect.t19...\c
ok

###########################################################
#  
#  CHROMOSOME SORT ORDER AND NAMING CONVENTIONS 
#
###########################################################

    intersect.t01...\c
ok
    intersect.t02...\c
ok
    intersect.t03...\c
ok
    intersect.t04...\c
ok
    intersect.t05...\c
ok
    intersect.t06...\c
ok
    intersect.t07...\c
ok
    intersect.t08...\c
ok
    intersect.t09...\c
ok
    intersect.t10...\c
ok
    intersect.t11...\c
ok
    intersect.t12...\c
ok
    intersect.t13...\c
ok
    intersect.t14...\c
ok
    intersect.t15...\c
ok
    intersect.t16...\c
ok
    intersect.t17...\c
ok
    intersect.t18...\c
ok
    intersect.t19...\c
ok
    intersect.20...\c
ok
    intersect.21...\c
ok
    intersect.22...\c
ok
    intersect.23...\c
ok
    intersect.new.t01...\c
ok
    intersect.new.t02...\c
ok
    intersect.new.t03...\c
ok
    intersect.new.t04...\c
ok
    intersect.new.t05...\c
ok
    intersect.new.t06...\c
ok
    intersect.new.t07...\c
ok
    intersect.new.t08...\c
ok
    intersect.new.t09...\c
ok
    intersect.new.t10...\c
ok
    intersect.new.t11...\c
ok
    intersect.new.t12...\c
ok
    intersect.new.t13...\c
ok
    intersect.new.t14...\c
ok
    intersect.new.t15...\c
ok
    intersect.new.t16...\c
ok
    intersect.new.t17...\c
ok
    intersect.new.t18...\c
ok
    intersect.new.t19...\c
ok
    intersect.new.t20...\c
ok
    intersect.new.t20.b...\c
ok
    intersect.new.t20.c...\c
ok
    intersect.new.t21...\c
ok
    intersect.new.t22...\c
ok
    intersect.new.t23...\c
ok
    intersect.new.t24...\c
ok
    intersect.new.t25...\c
ok
    intersect.new.t26...\c
ok
    intersect.new.t27...\c
ok
    intersect.new.t28...\c
ok
    intersect.new.t29...\c
ok
    intersect.new.t30...\c
ok
    intersect.new.t31...\c
ok
    intersect.new.t32...\c
ok
    intersect.new.t33...\c
ok
    intersect.new.t34...\c
ok
    intersect.new.t35...\c
ok
    intersect.new.t36...\c
ok
    intersect.new.t37...\c
ok
    intersect.new.t38...\c
ok
    intersect.new.t39...\c
ok
    intersect.new.t40...\c
ok
    intersect.new.t41...\c
ok
    intersect.new.t42...\c
ok
    intersect.new.t43...\c
ok
    intersect.new.t44...\c
ok
    intersect.new.t45...\c
ok
    intersect.new.t46...\c
ok
    intersect.new.t47...\c
ok
    intersect.new.t48...\c
ok
    intersect.new.t49...\c
ok
    intersect.new.t50...\c
ok
    intersect.new.t51...\c
ok
    intersect.new.t52...\c
ok
    intersect.new.t53...\c
ok
    intersect.new.t54...\c
ok
    intersect.new.t55...\c
ok
    intersect.new.t56...\c
ok
    intersect.new.t57...\c
ok
    intersect.new.t58...\c
ok
    intersect.new.t59...\c
ok
    intersect.new.t60...\c
ok
    intersect.new.t61...\c
new_test-intersect.sh: line 731: bgzip: command not found
Error: Unable to open file dummy.txt.gz. Exiting.
0a1
> #Random Header
fail
rm: cannot remove 'dummy.txt.gz': No such file or directory
    intersect.new.t62...\c
ok
    intersect.new.t63...\c
ok
    intersect.new.t64...\c
ok
    intersect.new.t65...\c
ok
    intersect.new.t66...\c
ok
    intersect.new.t67...\c
ok
    intersect.new.t68...\c
ok
 Testing bedtools jaccard:
    jaccard.t01...\c
ok
    jaccard.t02...\c
ok
    jaccard.t03...\c
ok
    jaccard.t05...\c
ok
    jaccard.t06...\c
ok
    jaccard.t07...\c
ok
    jaccard.t08...\c
ok
    jaccard.t09...\c
ok
    jaccard.t10...\c
ok
    jaccard.t11...\c
ok
    jaccard.t12...\c
ok
    jaccard.t13...\c
ok
 Testing bedtools map:
    map.t01...\c
ok
    map.t02...\c
ok
    map.t03...\c
ok
    map.t04...\c
ok
    map.t05...\c
ok
    map.t06...\c
ok
    map.t07...\c
ok
    map.t08...\c
ok
    map.t09...\c
ok
    map.t10...\c
ok
    map.t11...\c
ok
    map.t12...\c
ok
    map.t13...\c
ok
    map.t14...\c
ok
    map.t15...\c
ok
    map.t16...\c
ok
    map.t17...\c
ok
    map.t18...\c
ok
    map.t19...\c
ok
    map.t20...\c
ok
    map.t21...\c
ok
    map.t22..\c
ok
    map.t23..\c
ok
    map.t24..\c
ok
    map.t25..\c
ok
    map.t26..\c
ok
    map.t27..\c
ok
    map.t28..\c
ok
    map.t29..\c
ok
    map.t30..\c
ok
    map.t31..\c
ok
    map.t32..\c
ok
    map.t33..\c
ok
    map.t33..\c
ok
    map.t33..\c
ok
    map.t34..\c
ok
    map.t35..\c
ok
    map.t36..\c
ok
    map.t37..\c
ok
    map.t38..\c
ok
    map.t39..\c
ok
    map.t40..\c
ok
    map.t41..\c
ok
    map.t42..\c
ok
    map.t43..\c
ok
    map.t44...\c
ok
    map.t45...\c
ok
    map.t46...\c
ok
    map.t47...\c
ok
    map.t48...\c
ok
    map.t49...\c
ok
    map.t50...\c
ok
    map.t51...\c
ok
    map.t52...\c
ok
    map.t53...\c
ok
 Testing bedtools merge:
    merge.t1...\c
ok
    merge.t2...\c
ok
    merge.t3...\c
ok
    merge.t4...\c
ok
    merge.t5...\c
ok
    merge.t6...\c
ok
    merge.t7...\c
ok
    merge.t8...\c
ok
    merge.t9...\c
ok
    merge.t10...\c
ok
    merge.t11...\c
ok
    merge.t12...\c
ok
    merge.t13...\c
ok
    merge.t14...\c
ok
    merge.t15...\c
ok
    merge.t16...\c
ok
    merge.t17...\c
ok
    merge.t18...\c
ok
    merge.t19...\c
ok
    merge.t20...\c
ok
    merge.t21...\c
ok
    merge.t22...\c
ok
    merge.t23a...\c
ok
    merge.t23b...\c
ok
    merge.t24...\c
ok
    merge.t25...\c
ok
    merge.t26...\c
ok
    merge.t27...\c
ok
    merge.t28...\c
ok
    merge.t29...\c
ok
    merge.t30...\c
ok
    merge.t31...\c
ok
    merge.t32...\c
ok
    merge.t33...\c
ok
    merge.t34...\c
ok
    merge.t35...\c
ok
    merge.t36...\c
ok
    merge.t37...\c
ok
    merge.t38...\c
ok
    merge.t39...\c
ok
    merge.t40...\c
ok
    merge.t41...\c
ok
    merge.t42...\c
ok
    merge.t43...\c
ok
    merge.t44...\c
ok
    merge.t45...\c
ok
    merge.t46...\c
ok
    merge.t47...\c
ok
 Testing bedtools multicov:
    multicov.t1...\c
ok
    multicov.t2...\c
ok
    multicov.t3...\c
ok
    multicov.t4...\c
ok
    multicov.t5...\c
ok
    multicov.t6...\c
ok
    multicov.t7...\c
ok
    multicov.t8...\c
ok
    multicov.t9...\c
ok
 Testing bedtools reldist:
    reldist.t01...\c
2c2
< 0.00	43423	43423	1.000
---
> 0.00	43424	43424	1.000
fail
    reldist.t02...\c
ok
    reldist.t03...\c
ok
 Testing bedtools slop:
    slop.t1...\c
ok
    slop.t2...\c
ok
    slop.t3...\c
ok
    slop.t4...\c
ok
    slop.t5...\c
ok
    slop.t6...\c
ok
    slop.t7...\c
ok
    slop.t8...\c
ok
    slop.t9...\c
ok
    slop.t10...\c
ok
    slop.t11...\c
ok
    slop.t12...\c
ok
    slop.t13...\c
ok
    slop.t14...\c
ok
    slop.t15...\c
ok
 Testing bedtools shuffle:
    shuffle.t1...\c
1,10c1,10
< chr4	18120316	18120784	trf	789
< chr21	7219372	7219545	trf	346
< chr3	44696764	44697004	trf	434
< chr4	174464900	174465122	trf	273
< chr12	94822425	94822602	trf	187
< chr8	95576893	95577058	trf	199
< chr14	83751413	83751551	trf	242
< chr8	85463512	85463547	trf	70
< chr6	120627488	120627585	trf	79
< chr8	48095009	48095050	trf	73
---
> chr9	108600879	108601347	trf	789
> chr12	9186177	9186350	trf	346
> chr8	89726287	89726527	trf	434
> chr8	40323278	40323500	trf	273
> chr8	69904335	69904512	trf	187
> chr5	138240459	138240624	trf	199
> chr11	96382483	96382621	trf	242
> chr8	105834146	105834181	trf	70
> chrX	105921488	105921585	trf	79
> chrX	125331456	125331497	trf	73
fail
    shuffle.t2...\c
1,20c1,20
< chr3	592740	593208	trf	789
< chr5	283241	283414	trf	346
< chr1	1146758	1146998	trf	434
< chr1	1614940	1615162	trf	273
< chr1	2523743	2523920	trf	187
< chr3	643143	643308	trf	199
< chr1	474504	474642	trf	242
< chr3	529762	529797	trf	70
< chr4	169448	169545	trf	79
< chr3	161259	161300	trf	73
< chr1	3976352	3976384	trf	64
< chr5	801033	801138	trf	149
< chr3	349579	349617	trf	58
< chr3	496504	496974	trf	278
< chr1	2520176	2520646	trf	339
< chr5	548307	548735	trf	202
< chr1	2185314	2185357	trf	59
< chr3	580280	580320	trf	62
< chr3	346921	346956	trf	52
< chr5	648960	649137	trf	302
---
> chr3	542223	542691	trf	789
> chr5	444343	444516	trf	346
> chr1	2520601	2520841	trf	434
> chr5	194760	194982	trf	273
> chr1	2121545	2121722	trf	187
> chr1	2246343	2246508	trf	199
> chr1	2724117	2724255	trf	242
> chr4	304892	304927	trf	70
> chr2	332618	332715	trf	79
> chr5	822410	822451	trf	73
> chr1	1450982	1451014	trf	64
> chr1	3218361	3218466	trf	149
> chr4	338952	338990	trf	58
> chr3	713207	713677	trf	278
> chr1	4378307	4378777	trf	339
> chr1	4451988	4452416	trf	202
> chr1	1545567	1545610	trf	59
> chr1	573175	573215	trf	62
> chr4	931201	931236	trf	52
> chr1	4215777	4215954	trf	302
fail
    shuffle.t3...\c
1,20c1,20
< chr2	128881	129349	trf	789
< chr2	146758	146931	trf	346
< chr2	800535	800775	trf	434
< chr4	643143	643365	trf	273
< chr3	233696	233873	trf	187
< chr3	169448	169613	trf	199
< chr4	313867	314005	trf	242
< chr3	801033	801068	trf	70
< chr3	541169	541266	trf	79
< chr5	520176	520217	trf	73
< chr4	112916	112948	trf	64
< chr5	580280	580385	trf	149
< chr5	195221	195259	trf	58
< chr1	527447	527917	trf	278
< chr1	4001951	4002421	trf	339
< chr2	391843	392271	trf	202
< chr1	2069454	2069497	trf	59
< chr5	877263	877303	trf	62
< chr5	743195	743230	trf	52
< chr1	3931688	3931865	trf	302
---
> chr5	310009	310477	trf	789
> chr4	520601	520774	trf	346
> chr2	130650	130890	trf	434
> chr1	3246343	3246565	trf	273
> chr2	968160	968337	trf	187
> chr3	332618	332783	trf	199
> chr4	638727	638865	trf	242
> chr3	218361	218396	trf	70
> chr1	2259217	2259314	trf	79
> chr3	378307	378348	trf	73
> chr4	447387	447419	trf	64
> chr3	573175	573280	trf	149
> chr2	106791	106829	trf	58
> chr3	618697	619167	trf	278
> chr2	211901	212371	trf	339
> chr5	656883	657311	trf	202
> chr2	993338	993381	trf	59
> chr2	713531	713571	trf	62
> chr2	428268	428303	trf	52
> chr4	590632	590809	trf	302
fail
    shuffle.t4...\c
ok
    shuffle.t5...\c
1,10c1,10
< chr4	18120316	18120784	trf	789
< chr3	44696764	44697004	trf	434
< chr1	124123417	124123522	trf	149
< chr1	124123417	124123522	trf	149
< chr1	202671963	202672001	trf	58
< chr1	202671963	202672001	trf	58
< chr2	14591939	14592409	trf	339
< chr2	8329659	8329699	trf	62
< chr1	120971344	120971521	trf	302
< chr1	120971344	120971521	trf	302
---
> chr1	150415830	150415862	trf	64
> chr1	150415830	150415862	trf	64
> chr5	78078743	78079213	trf	339
> chr4	84711820	84712248	trf	202
> chr4	61777751	61777794	trf	59
> chr3	28583223	28583400	trf	302
> chr1	55933709	55934092	trf	712
> chr1	55933709	55934092	trf	712
> chr1	39686691	39686725	trf	68
> chr2	2555287	2555330	trf	86
fail
 Testing bedtools subtract:
    subtract.t1...\c
ok
    subtract.t2...\c
ok
    subtract.t3...\c
ok
    subtract.t4...\c
ok
    subtract.t5...\c
ok
    subtract.t6...\c
ok
    subtract.t7...\c
ok
    subtract.t8...\c
ok
    subtract.t9...\c
ok
    subtract.t10...\c
ok
    subtract.t11...\c
ok
    subtract.t12...\c
ok
    subtract.t13...\c
ok
    subtract.t14...\c
ok
    subtract.t15...\c
ok
    subtract.t16...\c
ok
    subtract.t17...\c
ok
    subtract.t18...\c
ok
    subtract.t19...\c
ok
    subtract.t20...\c
ok
    subtract.t21...\c
ok
 Testing bedtools sample:
    sample.t01...\c
ok
    sample.new.t02...\c
ok
    sample.new.t03...\c
ok
    sample.new.t04...\c
ok
    sample.new.t05...\c
ok
    sample.new.t06...\c
ok
    sample.new.t07...\c
ok
    sample.new.t08...\c
ok
    sample.new.t09...\c
ok
 Testing bedtools split:
    slpit.size...\c
_tmp.00001.bed	10008118	201
_tmp.00002.bed	10008239	200
_tmp.00003.bed	10008196	200
_tmp.00004.bed	10008134	200
_tmp.00005.bed	10008211	200
_tmp.00006.bed	10008245	200
_tmp.00007.bed	10008130	200
_tmp.00008.bed	10008183	200
_tmp.00009.bed	10008140	200
_tmp.00010.bed	10008112	202
_tmp.00011.bed	10008115	201
_tmp.00012.bed	10008109	202
_tmp.00013.bed	10008118	200
_tmp.00014.bed	10008177	200
_tmp.00015.bed	10008186	200
_tmp.00016.bed	10008095	200
_tmp.00017.bed	10008244	200
_tmp.00018.bed	10008109	200
_tmp.00019.bed	10008186	200
_tmp.00020.bed	10008094	200
_tmp.00021.bed	10008089	200
_tmp.00022.bed	10008142	200
_tmp.00023.bed	10008075	200
_tmp.00024.bed	10008078	200
_tmp.00025.bed	10008102	201
_tmp.00026.bed	10008094	200
_tmp.00027.bed	10008267	200
_tmp.00028.bed	10008110	201
_tmp.00029.bed	10008106	200
_tmp.00030.bed	10008253	200
_tmp.00031.bed	10007982	200
_tmp.00032.bed	10007914	199
_tmp.00033.bed	10008248	200
_tmp.00034.bed	10008262	200
_tmp.00035.bed	10008130	200
_tmp.00036.bed	10008090	200
_tmp.00037.bed	10008135	200
_tmp.00038.bed	10007914	199
_tmp.00039.bed	10007947	199
_tmp.00040.bed	10008173	200
_tmp.00041.bed	10008158	200
_tmp.00042.bed	10007952	199
_tmp.00043.bed	10007973	199
_tmp.00044.bed	10007919	199
_tmp.00045.bed	10008243	200
_tmp.00046.bed	10007990	199
_tmp.00047.bed	10008101	200
_tmp.00048.bed	10008203	200
_tmp.00049.bed	10008177	200
_tmp.00050.bed	10007992	199
    slpit.simple...\c
_tmp.00001.bed	10383293	200
_tmp.00002.bed	9689504	200
_tmp.00003.bed	9979394	200
_tmp.00004.bed	10044700	200
_tmp.00005.bed	10037664	200
_tmp.00006.bed	9927024	200
_tmp.00007.bed	9523076	200
_tmp.00008.bed	9755327	200
_tmp.00009.bed	10472367	200
_tmp.00010.bed	9957740	200
_tmp.00011.bed	9788244	200
_tmp.00012.bed	10206478	200
_tmp.00013.bed	9447400	200
_tmp.00014.bed	9929217	200
_tmp.00015.bed	9659419	200
_tmp.00016.bed	9680232	200
_tmp.00017.bed	9945910	200
_tmp.00018.bed	9120039	200
_tmp.00019.bed	9477907	200
_tmp.00020.bed	10026804	200
_tmp.00021.bed	9852814	200
_tmp.00022.bed	10545264	200
_tmp.00023.bed	9873209	200
_tmp.00024.bed	10288087	200
_tmp.00025.bed	10260838	200
_tmp.00026.bed	9614691	200
_tmp.00027.bed	10147634	200
_tmp.00028.bed	10106631	200
_tmp.00029.bed	10081432	200
_tmp.00030.bed	9766114	200
_tmp.00031.bed	10208732	200
_tmp.00032.bed	10246139	200
_tmp.00033.bed	10038728	200
_tmp.00034.bed	9581968	200
_tmp.00035.bed	9828160	200
_tmp.00036.bed	10130412	200
_tmp.00037.bed	10324249	200
_tmp.00038.bed	10381756	200
_tmp.00039.bed	10525373	200
_tmp.00040.bed	10265223	200
_tmp.00041.bed	9888666	200
_tmp.00042.bed	9932109	200
_tmp.00043.bed	9905693	200
_tmp.00044.bed	10677499	200
_tmp.00045.bed	9905825	200
_tmp.00046.bed	10611583	200
_tmp.00047.bed	10711877	200
_tmp.00048.bed	10311105	200
_tmp.00049.bed	9705714	200
_tmp.00050.bed	9636696	200
    slpit.simple...\c
_tmp.00001.bed	468415	10
_tmp.00002.bed	470667	10
_tmp.00003.bed	576803	10
_tmp.00004.bed	442343	10
_tmp.00005.bed	434128	10
_tmp.00006.bed	374417	10
_tmp.00007.bed	502314	10
_tmp.00008.bed	588162	10
_tmp.00009.bed	540939	10
_tmp.00010.bed	422055	10
_tmp.00011.bed	625237	10
_tmp.00012.bed	417056	10
_tmp.00013.bed	527502	10
_tmp.00014.bed	504938	10
_tmp.00015.bed	532604	10
_tmp.00016.bed	521368	10
_tmp.00017.bed	622310	10
_tmp.00018.bed	545074	10
_tmp.00019.bed	459410	10
_tmp.00020.bed	398474	10
_tmp.00021.bed	403440	10
_tmp.00022.bed	616346	10
_tmp.00023.bed	564497	10
_tmp.00024.bed	650955	10
_tmp.00025.bed	427841	10
_tmp.00026.bed	506748	10
_tmp.00027.bed	387509	10
_tmp.00028.bed	594428	10
_tmp.00029.bed	551130	10
_tmp.00030.bed	616743	10
_tmp.00031.bed	531332	10
_tmp.00032.bed	574135	10
_tmp.00033.bed	524511	10
_tmp.00034.bed	364971	10
_tmp.00035.bed	472693	10
_tmp.00036.bed	518645	10
_tmp.00037.bed	541743	10
_tmp.00038.bed	495819	10
_tmp.00039.bed	414162	10
_tmp.00040.bed	460261	10
_tmp.00041.bed	397221	10
_tmp.00042.bed	505880	10
_tmp.00043.bed	463287	10
_tmp.00044.bed	608209	10
_tmp.00045.bed	561398	10
_tmp.00046.bed	553397	10
_tmp.00047.bed	523307	10
_tmp.00048.bed	561019	10
_tmp.00049.bed	538071	10
_tmp.00050.bed	561791	10
_tmp.00051.bed	489064	10
_tmp.00052.bed	439076	10
_tmp.00053.bed	654403	10
_tmp.00054.bed	625164	10
_tmp.00055.bed	493382	10
_tmp.00056.bed	463860	10
_tmp.00057.bed	407378	10
_tmp.00058.bed	328833	10
_tmp.00059.bed	535666	10
_tmp.00060.bed	450513	10
_tmp.00061.bed	576405	10
_tmp.00062.bed	522479	10
_tmp.00063.bed	537608	10
_tmp.00064.bed	494268	10
_tmp.00065.bed	536184	10
_tmp.00066.bed	479643	10
_tmp.00067.bed	506878	10
_tmp.00068.bed	439610	10
_tmp.00069.bed	445296	10
_tmp.00070.bed	402081	10
_tmp.00071.bed	601693	10
_tmp.00072.bed	433224	10
_tmp.00073.bed	593007	10
_tmp.00074.bed	329534	10
_tmp.00075.bed	723740	10
_tmp.00076.bed	303427	10
_tmp.00077.bed	360601	10
_tmp.00078.bed	630211	10
_tmp.00079.bed	632429	10
_tmp.00080.bed	518911	10
_tmp.00081.bed	628010	10
_tmp.00082.bed	545078	10
_tmp.00083.bed	354596	10
_tmp.00084.bed	546916	10
_tmp.00085.bed	461621	10
_tmp.00086.bed	499071	10
_tmp.00087.bed	518703	10
_tmp.00088.bed	578016	10
_tmp.00089.bed	618434	10
_tmp.00090.bed	463131	10
_tmp.00091.bed	629541	10
_tmp.00092.bed	316426	10
_tmp.00093.bed	476022	10
_tmp.00094.bed	637680	10
_tmp.00095.bed	372093	10
_tmp.00096.bed	594714	10
_tmp.00097.bed	537262	10
_tmp.00098.bed	480953	10
_tmp.00099.bed	543967	10
_tmp.00100.bed	593363	10
_tmp.00101.bed	476718	10
_tmp.00102.bed	567314	10
_tmp.00103.bed	648705	10
_tmp.00104.bed	554481	10
_tmp.00105.bed	501285	10
_tmp.00106.bed	361850	10
_tmp.00107.bed	504837	10
_tmp.00108.bed	690330	10
_tmp.00109.bed	345305	10
_tmp.00110.bed	479881	10
_tmp.00111.bed	465756	10
_tmp.00112.bed	395963	10
_tmp.00113.bed	476768	10
_tmp.00114.bed	647318	10
_tmp.00115.bed	422363	10
_tmp.00116.bed	479276	10
_tmp.00117.bed	460291	10
_tmp.00118.bed	441522	10
_tmp.00119.bed	288090	10
_tmp.00120.bed	551508	10
_tmp.00121.bed	607862	10
_tmp.00122.bed	491342	10
_tmp.00123.bed	498099	10
_tmp.00124.bed	605916	10
_tmp.00125.bed	411842	10
_tmp.00126.bed	518269	10
_tmp.00127.bed	428938	10
_tmp.00128.bed	495362	10
_tmp.00129.bed	443156	10
_tmp.00130.bed	547795	10
_tmp.00131.bed	507950	10
_tmp.00132.bed	411112	10
_tmp.00133.bed	554481	10
_tmp.00134.bed	445164	10
_tmp.00135.bed	333592	10
_tmp.00136.bed	467566	10
_tmp.00137.bed	625858	10
_tmp.00138.bed	421988	10
_tmp.00139.bed	496729	10
_tmp.00140.bed	486656	10
_tmp.00141.bed	533930	10
_tmp.00142.bed	585133	10
_tmp.00143.bed	437688	10
_tmp.00144.bed	615745	10
_tmp.00145.bed	338100	10
_tmp.00146.bed	607333	10
_tmp.00147.bed	662281	10
_tmp.00148.bed	566521	10
_tmp.00149.bed	487050	10
_tmp.00150.bed	435233	10
_tmp.00151.bed	579676	10
_tmp.00152.bed	643978	10
_tmp.00153.bed	491543	10
_tmp.00154.bed	446801	10
_tmp.00155.bed	311401	10
_tmp.00156.bed	441993	10
_tmp.00157.bed	455051	10
_tmp.00158.bed	567936	10
_tmp.00159.bed	636069	10
_tmp.00160.bed	469183	10
_tmp.00161.bed	401514	10
_tmp.00162.bed	552874	10
_tmp.00163.bed	431358	10
_tmp.00164.bed	333255	10
_tmp.00165.bed	442236	10
_tmp.00166.bed	317695	10
_tmp.00167.bed	486911	10
_tmp.00168.bed	440336	10
_tmp.00169.bed	420929	10
_tmp.00170.bed	435905	10
_tmp.00171.bed	536818	10
_tmp.00172.bed	537410	10
_tmp.00173.bed	391515	10
_tmp.00174.bed	551843	10
_tmp.00175.bed	591703	10
_tmp.00176.bed	387440	10
_tmp.00177.bed	724595	10
_tmp.00178.bed	431826	10
_tmp.00179.bed	586966	10
_tmp.00180.bed	330876	10
_tmp.00181.bed	441995	10
_tmp.00182.bed	527838	10
_tmp.00183.bed	465629	10
_tmp.00184.bed	418063	10
_tmp.00185.bed	518715	10
_tmp.00186.bed	599207	10
_tmp.00187.bed	601755	10
_tmp.00188.bed	650806	10
_tmp.00189.bed	507757	10
_tmp.00190.bed	660962	10
_tmp.00191.bed	357577	10
_tmp.00192.bed	406050	10
_tmp.00193.bed	403106	10
_tmp.00194.bed	583986	10
_tmp.00195.bed	551537	10
_tmp.00196.bed	662316	10
_tmp.00197.bed	386834	10
_tmp.00198.bed	478725	10
_tmp.00199.bed	677835	10
_tmp.00200.bed	409440	10
_tmp.00201.bed	393358	10
_tmp.00202.bed	637109	10
_tmp.00203.bed	434504	10
_tmp.00204.bed	533563	10
_tmp.00205.bed	494476	10
_tmp.00206.bed	757164	10
_tmp.00207.bed	542802	10
_tmp.00208.bed	500593	10
_tmp.00209.bed	483277	10
_tmp.00210.bed	531899	10
_tmp.00211.bed	480468	10
_tmp.00212.bed	568662	10
_tmp.00213.bed	448905	10
_tmp.00214.bed	359141	10
_tmp.00215.bed	418308	10
_tmp.00216.bed	503597	10
_tmp.00217.bed	477694	10
_tmp.00218.bed	393992	10
_tmp.00219.bed	596807	10
_tmp.00220.bed	492508	10
_tmp.00221.bed	391250	10
_tmp.00222.bed	482518	10
_tmp.00223.bed	447090	10
_tmp.00224.bed	405138	10
_tmp.00225.bed	443084	10
_tmp.00226.bed	580263	10
_tmp.00227.bed	525993	10
_tmp.00228.bed	411191	10
_tmp.00229.bed	698125	10
_tmp.00230.bed	424949	10
_tmp.00231.bed	616605	10
_tmp.00232.bed	544496	10
_tmp.00233.bed	444884	10
_tmp.00234.bed	459738	10
_tmp.00235.bed	385769	10
_tmp.00236.bed	499255	10
_tmp.00237.bed	565603	10
_tmp.00238.bed	433269	10
_tmp.00239.bed	412433	10
_tmp.00240.bed	561737	10
_tmp.00241.bed	591713	10
_tmp.00242.bed	545550	10
_tmp.00243.bed	562810	10
_tmp.00244.bed	583345	10
_tmp.00245.bed	562113	10
_tmp.00246.bed	479560	10
_tmp.00247.bed	527344	10
_tmp.00248.bed	535935	10
_tmp.00249.bed	410204	10
_tmp.00250.bed	492421	10
_tmp.00251.bed	483694	10
_tmp.00252.bed	395120	10
_tmp.00253.bed	501745	10
_tmp.00254.bed	410761	10
_tmp.00255.bed	640261	10
_tmp.00256.bed	572357	10
_tmp.00257.bed	407442	10
_tmp.00258.bed	475788	10
_tmp.00259.bed	575423	10
_tmp.00260.bed	678626	10
_tmp.00261.bed	482380	10
_tmp.00262.bed	453875	10
_tmp.00263.bed	374402	10
_tmp.00264.bed	508475	10
_tmp.00265.bed	404549	10
_tmp.00266.bed	456830	10
_tmp.00267.bed	558391	10
_tmp.00268.bed	557486	10
_tmp.00269.bed	392933	10
_tmp.00270.bed	449311	10
_tmp.00271.bed	507714	10
_tmp.00272.bed	627759	10
_tmp.00273.bed	689217	10
_tmp.00274.bed	450538	10
_tmp.00275.bed	596019	10
_tmp.00276.bed	474388	10
_tmp.00277.bed	652366	10
_tmp.00278.bed	415042	10
_tmp.00279.bed	461392	10
_tmp.00280.bed	524319	10
_tmp.00281.bed	540088	10
_tmp.00282.bed	449120	10
_tmp.00283.bed	555605	10
_tmp.00284.bed	529410	10
_tmp.00285.bed	357049	10
_tmp.00286.bed	536778	10
_tmp.00287.bed	354999	10
_tmp.00288.bed	655721	10
_tmp.00289.bed	587433	10
_tmp.00290.bed	323617	10
_tmp.00291.bed	584518	10
_tmp.00292.bed	619277	10
_tmp.00293.bed	498993	10
_tmp.00294.bed	742624	10
_tmp.00295.bed	644069	10
_tmp.00296.bed	571761	10
_tmp.00297.bed	543255	10
_tmp.00298.bed	560668	10
_tmp.00299.bed	499139	10
_tmp.00300.bed	349779	10
_tmp.00301.bed	557283	10
_tmp.00302.bed	442947	10
_tmp.00303.bed	467334	10
_tmp.00304.bed	469134	10
_tmp.00305.bed	416001	10
_tmp.00306.bed	417498	10
_tmp.00307.bed	460278	10
_tmp.00308.bed	302989	10
_tmp.00309.bed	465856	10
_tmp.00310.bed	406283	10
_tmp.00311.bed	578818	10
_tmp.00312.bed	637438	10
_tmp.00313.bed	296999	10
_tmp.00314.bed	506071	10
_tmp.00315.bed	519988	10
_tmp.00316.bed	544823	10
_tmp.00317.bed	572231	10
_tmp.00318.bed	380843	10
_tmp.00319.bed	556210	10
_tmp.00320.bed	616579	10
_tmp.00321.bed	421036	10
_tmp.00322.bed	552684	10
_tmp.00323.bed	600774	10
_tmp.00324.bed	303161	10
_tmp.00325.bed	459640	10
_tmp.00326.bed	464069	10
_tmp.00327.bed	439908	10
_tmp.00328.bed	557527	10
_tmp.00329.bed	514880	10
_tmp.00330.bed	485306	10
_tmp.00331.bed	479711	10
_tmp.00332.bed	304214	10
_tmp.00333.bed	473021	10
_tmp.00334.bed	543525	10
_tmp.00335.bed	589600	10
_tmp.00336.bed	395304	10
_tmp.00337.bed	542823	10
_tmp.00338.bed	524143	10
_tmp.00339.bed	672324	10
_tmp.00340.bed	477705	10
_tmp.00341.bed	634564	10
_tmp.00342.bed	429941	10
_tmp.00343.bed	561670	10
_tmp.00344.bed	521632	10
_tmp.00345.bed	478572	10
_tmp.00346.bed	600260	10
_tmp.00347.bed	564376	10
_tmp.00348.bed	491669	10
_tmp.00349.bed	493682	10
_tmp.00350.bed	482746	10
_tmp.00351.bed	673731	10
_tmp.00352.bed	450330	10
_tmp.00353.bed	559027	10
_tmp.00354.bed	542918	10
_tmp.00355.bed	361546	10
_tmp.00356.bed	566677	10
_tmp.00357.bed	556224	10
_tmp.00358.bed	449008	10
_tmp.00359.bed	521522	10
_tmp.00360.bed	569687	10
_tmp.00361.bed	510858	10
_tmp.00362.bed	510075	10
_tmp.00363.bed	486491	10
_tmp.00364.bed	380001	10
_tmp.00365.bed	518254	10
_tmp.00366.bed	532458	10
_tmp.00367.bed	413018	10
_tmp.00368.bed	454932	10
_tmp.00369.bed	489751	10
_tmp.00370.bed	421299	10
_tmp.00371.bed	531450	10
_tmp.00372.bed	488774	10
_tmp.00373.bed	491002	10
_tmp.00374.bed	503203	10
_tmp.00375.bed	558681	10
_tmp.00376.bed	456143	10
_tmp.00377.bed	406275	10
_tmp.00378.bed	571499	10
_tmp.00379.bed	476318	10
_tmp.00380.bed	564791	10
_tmp.00381.bed	627393	10
_tmp.00382.bed	488250	10
_tmp.00383.bed	512349	10
_tmp.00384.bed	531447	10
_tmp.00385.bed	639028	10
_tmp.00386.bed	738747	10
_tmp.00387.bed	498316	10
_tmp.00388.bed	601269	10
_tmp.00389.bed	576052	10
_tmp.00390.bed	582367	10
_tmp.00391.bed	484317	10
_tmp.00392.bed	571758	10
_tmp.00393.bed	568899	10
_tmp.00394.bed	523466	10
_tmp.00395.bed	297073	10
_tmp.00396.bed	559850	10
_tmp.00397.bed	561945	10
_tmp.00398.bed	420650	10
_tmp.00399.bed	594371	10
_tmp.00400.bed	599319	10
_tmp.00401.bed	569542	10
_tmp.00402.bed	515565	10
_tmp.00403.bed	463908	10
_tmp.00404.bed	267986	10
_tmp.00405.bed	492947	10
_tmp.00406.bed	296572	10
_tmp.00407.bed	401121	10
_tmp.00408.bed	430871	10
_tmp.00409.bed	514212	10
_tmp.00410.bed	348920	10
_tmp.00411.bed	460400	10
_tmp.00412.bed	455909	10
_tmp.00413.bed	545518	10
_tmp.00414.bed	374120	10
_tmp.00415.bed	557587	10
_tmp.00416.bed	433252	10
_tmp.00417.bed	638993	10
_tmp.00418.bed	486605	10
_tmp.00419.bed	474417	10
_tmp.00420.bed	495442	10
_tmp.00421.bed	315012	10
_tmp.00422.bed	517880	10
_tmp.00423.bed	568301	10
_tmp.00424.bed	658607	10
_tmp.00425.bed	491108	10
_tmp.00426.bed	619210	10
_tmp.00427.bed	643428	10
_tmp.00428.bed	528821	10
_tmp.00429.bed	394268	10
_tmp.00430.bed	437619	10
_tmp.00431.bed	415447	10
_tmp.00432.bed	519368	10
_tmp.00433.bed	542636	10
_tmp.00434.bed	436944	10
_tmp.00435.bed	620943	10
_tmp.00436.bed	653083	10
_tmp.00437.bed	435325	10
_tmp.00438.bed	356973	10
_tmp.00439.bed	534160	10
_tmp.00440.bed	496848	10
_tmp.00441.bed	486674	10
_tmp.00442.bed	512032	10
_tmp.00443.bed	492918	10
_tmp.00444.bed	535029	10
_tmp.00445.bed	546993	10
_tmp.00446.bed	662276	10
_tmp.00447.bed	730294	10
_tmp.00448.bed	557246	10
_tmp.00449.bed	280688	10
_tmp.00450.bed	439193	10
_tmp.00451.bed	527755	10
_tmp.00452.bed	456315	10
_tmp.00453.bed	580459	10
_tmp.00454.bed	500288	10
_tmp.00455.bed	413029	10
_tmp.00456.bed	447750	10
_tmp.00457.bed	497834	10
_tmp.00458.bed	465441	10
_tmp.00459.bed	673446	10
_tmp.00460.bed	541076	10
_tmp.00461.bed	552669	10
_tmp.00462.bed	391019	10
_tmp.00463.bed	626859	10
_tmp.00464.bed	538411	10
_tmp.00465.bed	491443	10
_tmp.00466.bed	406723	10
_tmp.00467.bed	386118	10
_tmp.00468.bed	325841	10
_tmp.00469.bed	539035	10
_tmp.00470.bed	583824	10
_tmp.00471.bed	462445	10
_tmp.00472.bed	554317	10
_tmp.00473.bed	509792	10
_tmp.00474.bed	596355	10
_tmp.00475.bed	409750	10
_tmp.00476.bed	510654	10
_tmp.00477.bed	501901	10
_tmp.00478.bed	492747	10
_tmp.00479.bed	504411	10
_tmp.00480.bed	441578	10
_tmp.00481.bed	532125	10
_tmp.00482.bed	623605	10
_tmp.00483.bed	509163	10
_tmp.00484.bed	562294	10
_tmp.00485.bed	478115	10
_tmp.00486.bed	569855	10
_tmp.00487.bed	549413	10
_tmp.00488.bed	375527	10
_tmp.00489.bed	497300	10
_tmp.00490.bed	491616	10
_tmp.00491.bed	617480	10
_tmp.00492.bed	542525	10
_tmp.00493.bed	472398	10
_tmp.00494.bed	487275	10
_tmp.00495.bed	509424	10
_tmp.00496.bed	473194	10
_tmp.00497.bed	627521	10
_tmp.00498.bed	561659	10
_tmp.00499.bed	467350	10
_tmp.00500.bed	418593	10
_tmp.00501.bed	549769	10
_tmp.00502.bed	438947	10
_tmp.00503.bed	409737	10
_tmp.00504.bed	628426	10
_tmp.00505.bed	524920	10
_tmp.00506.bed	459820	10
_tmp.00507.bed	564534	10
_tmp.00508.bed	496054	10
_tmp.00509.bed	434066	10
_tmp.00510.bed	465609	10
_tmp.00511.bed	421063	10
_tmp.00512.bed	507161	10
_tmp.00513.bed	611465	10
_tmp.00514.bed	537975	10
_tmp.00515.bed	430320	10
_tmp.00516.bed	425086	10
_tmp.00517.bed	375885	10
_tmp.00518.bed	471829	10
_tmp.00519.bed	511214	10
_tmp.00520.bed	554009	10
_tmp.00521.bed	471172	10
_tmp.00522.bed	414550	10
_tmp.00523.bed	621905	10
_tmp.00524.bed	571141	10
_tmp.00525.bed	567036	10
_tmp.00526.bed	481211	10
_tmp.00527.bed	546226	10
_tmp.00528.bed	521600	10
_tmp.00529.bed	608490	10
_tmp.00530.bed	547431	10
_tmp.00531.bed	484716	10
_tmp.00532.bed	379023	10
_tmp.00533.bed	632315	10
_tmp.00534.bed	500629	10
_tmp.00535.bed	585216	10
_tmp.00536.bed	351339	10
_tmp.00537.bed	492968	10
_tmp.00538.bed	427513	10
_tmp.00539.bed	509776	10
_tmp.00540.bed	464867	10
_tmp.00541.bed	586146	10
_tmp.00542.bed	521644	10
_tmp.00543.bed	432330	10
_tmp.00544.bed	532824	10
_tmp.00545.bed	440486	10
_tmp.00546.bed	521031	10
_tmp.00547.bed	488575	10
_tmp.00548.bed	433290	10
_tmp.00549.bed	638049	10
_tmp.00550.bed	421549	10
_tmp.00551.bed	468533	10
_tmp.00552.bed	305367	10
_tmp.00553.bed	403130	10
_tmp.00554.bed	441855	10
_tmp.00555.bed	478118	10
_tmp.00556.bed	451140	10
_tmp.00557.bed	519912	10
_tmp.00558.bed	357090	10
_tmp.00559.bed	541659	10
_tmp.00560.bed	616889	10
_tmp.00561.bed	406941	10
_tmp.00562.bed	688152	10
_tmp.00563.bed	309774	10
_tmp.00564.bed	570119	10
_tmp.00565.bed	493753	10
_tmp.00566.bed	488457	10
_tmp.00567.bed	463637	10
_tmp.00568.bed	396497	10
_tmp.00569.bed	557422	10
_tmp.00570.bed	495064	10
_tmp.00571.bed	460684	10
_tmp.00572.bed	536867	10
_tmp.00573.bed	498835	10
_tmp.00574.bed	482101	10
_tmp.00575.bed	468850	10
_tmp.00576.bed	480246	10
_tmp.00577.bed	561866	10
_tmp.00578.bed	322592	10
_tmp.00579.bed	367768	10
_tmp.00580.bed	512874	10
_tmp.00581.bed	490091	10
_tmp.00582.bed	455617	10
_tmp.00583.bed	481759	10
_tmp.00584.bed	415856	10
_tmp.00585.bed	643578	10
_tmp.00586.bed	493451	10
_tmp.00587.bed	506624	10
_tmp.00588.bed	555882	10
_tmp.00589.bed	546428	10
_tmp.00590.bed	468364	10
_tmp.00591.bed	312805	10
_tmp.00592.bed	533889	10
_tmp.00593.bed	634522	10
_tmp.00594.bed	386990	10
_tmp.00595.bed	276214	10
_tmp.00596.bed	491641	10
_tmp.00597.bed	608872	10
_tmp.00598.bed	603995	10
_tmp.00599.bed	485139	10
_tmp.00600.bed	589334	10
_tmp.00601.bed	653829	10
_tmp.00602.bed	407809	10
_tmp.00603.bed	304811	10
_tmp.00604.bed	446785	10
_tmp.00605.bed	452582	10
_tmp.00606.bed	567991	10
_tmp.00607.bed	436929	10
_tmp.00608.bed	401205	10
_tmp.00609.bed	520770	10
_tmp.00610.bed	514332	10
_tmp.00611.bed	480544	10
_tmp.00612.bed	544689	10
_tmp.00613.bed	595042	10
_tmp.00614.bed	575822	10
_tmp.00615.bed	540316	10
_tmp.00616.bed	545906	10
_tmp.00617.bed	470160	10
_tmp.00618.bed	499860	10
_tmp.00619.bed	319851	10
_tmp.00620.bed	677867	10
_tmp.00621.bed	458156	10
_tmp.00622.bed	628761	10
_tmp.00623.bed	413128	10
_tmp.00624.bed	534041	10
_tmp.00625.bed	417556	10
_tmp.00626.bed	518711	10
_tmp.00627.bed	462923	10
_tmp.00628.bed	503183	10
_tmp.00629.bed	457021	10
_tmp.00630.bed	437422	10
_tmp.00631.bed	475946	10
_tmp.00632.bed	516033	10
_tmp.00633.bed	531953	10
_tmp.00634.bed	465139	10
_tmp.00635.bed	581411	10
_tmp.00636.bed	500447	10
_tmp.00637.bed	420728	10
_tmp.00638.bed	569082	10
_tmp.00639.bed	566361	10
_tmp.00640.bed	567649	10
_tmp.00641.bed	410416	10
_tmp.00642.bed	373126	10
_tmp.00643.bed	446496	10
_tmp.00644.bed	410682	10
_tmp.00645.bed	677452	10
_tmp.00646.bed	428251	10
_tmp.00647.bed	307852	10
_tmp.00648.bed	504937	10
_tmp.00649.bed	532326	10
_tmp.00650.bed	547931	10
_tmp.00651.bed	602723	10
_tmp.00652.bed	340810	10
_tmp.00653.bed	442200	10
_tmp.00654.bed	421210	10
_tmp.00655.bed	647687	10
_tmp.00656.bed	466150	10
_tmp.00657.bed	508758	10
_tmp.00658.bed	376702	10
_tmp.00659.bed	482675	10
_tmp.00660.bed	288608	10
_tmp.00661.bed	541373	10
_tmp.00662.bed	526499	10
_tmp.00663.bed	525305	10
_tmp.00664.bed	604145	10
_tmp.00665.bed	487074	10
_tmp.00666.bed	480293	10
_tmp.00667.bed	602734	10
_tmp.00668.bed	594414	10
_tmp.00669.bed	438997	10
_tmp.00670.bed	480903	10
_tmp.00671.bed	580636	10
_tmp.00672.bed	444613	10
_tmp.00673.bed	268446	10
_tmp.00674.bed	435898	10
_tmp.00675.bed	533135	10
_tmp.00676.bed	377939	10
_tmp.00677.bed	427584	10
_tmp.00678.bed	690107	10
_tmp.00679.bed	531165	10
_tmp.00680.bed	609025	10
_tmp.00681.bed	447459	10
_tmp.00682.bed	575835	10
_tmp.00683.bed	552131	10
_tmp.00684.bed	420639	10
_tmp.00685.bed	495958	10
_tmp.00686.bed	375396	10
_tmp.00687.bed	595342	10
_tmp.00688.bed	578627	10
_tmp.00689.bed	656713	10
_tmp.00690.bed	537650	10
_tmp.00691.bed	416098	10
_tmp.00692.bed	515464	10
_tmp.00693.bed	557720	10
_tmp.00694.bed	507466	10
_tmp.00695.bed	464854	10
_tmp.00696.bed	533375	10
_tmp.00697.bed	632411	10
_tmp.00698.bed	662668	10
_tmp.00699.bed	417943	10
_tmp.00700.bed	387408	10
_tmp.00701.bed	422872	10
_tmp.00702.bed	476511	10
_tmp.00703.bed	587841	10
_tmp.00704.bed	406372	10
_tmp.00705.bed	576835	10
_tmp.00706.bed	665426	10
_tmp.00707.bed	434539	10
_tmp.00708.bed	550741	10
_tmp.00709.bed	537123	10
_tmp.00710.bed	593960	10
_tmp.00711.bed	444844	10
_tmp.00712.bed	491906	10
_tmp.00713.bed	482476	10
_tmp.00714.bed	419459	10
_tmp.00715.bed	499188	10
_tmp.00716.bed	457259	10
_tmp.00717.bed	485180	10
_tmp.00718.bed	429116	10
_tmp.00719.bed	409025	10
_tmp.00720.bed	573387	10
_tmp.00721.bed	518508	10
_tmp.00722.bed	616351	10
_tmp.00723.bed	456412	10
_tmp.00724.bed	512558	10
_tmp.00725.bed	552375	10
_tmp.00726.bed	605754	10
_tmp.00727.bed	519663	10
_tmp.00728.bed	514941	10
_tmp.00729.bed	455820	10
_tmp.00730.bed	564514	10
_tmp.00731.bed	485577	10
_tmp.00732.bed	421840	10
_tmp.00733.bed	553098	10
_tmp.00734.bed	408702	10
_tmp.00735.bed	444156	10
_tmp.00736.bed	496785	10
_tmp.00737.bed	500941	10
_tmp.00738.bed	544707	10
_tmp.00739.bed	278907	10
_tmp.00740.bed	631230	10
_tmp.00741.bed	522897	10
_tmp.00742.bed	551106	10
_tmp.00743.bed	608097	10
_tmp.00744.bed	550958	10
_tmp.00745.bed	567351	10
_tmp.00746.bed	476682	10
_tmp.00747.bed	511396	10
_tmp.00748.bed	253424	10
_tmp.00749.bed	468372	10
_tmp.00750.bed	556408	10
_tmp.00751.bed	514948	10
_tmp.00752.bed	512053	10
_tmp.00753.bed	559906	10
_tmp.00754.bed	524706	10
_tmp.00755.bed	601023	10
_tmp.00756.bed	487255	10
_tmp.00757.bed	450159	10
_tmp.00758.bed	555748	10
_tmp.00759.bed	628450	10
_tmp.00760.bed	527474	10
_tmp.00761.bed	297217	10
_tmp.00762.bed	516235	10
_tmp.00763.bed	449172	10
_tmp.00764.bed	472116	10
_tmp.00765.bed	449036	10
_tmp.00766.bed	459040	10
_tmp.00767.bed	488336	10
_tmp.00768.bed	531589	10
_tmp.00769.bed	522189	10
_tmp.00770.bed	397716	10
_tmp.00771.bed	480249	10
_tmp.00772.bed	481824	10
_tmp.00773.bed	472702	10
_tmp.00774.bed	548801	10
_tmp.00775.bed	556516	10
_tmp.00776.bed	518202	10
_tmp.00777.bed	653419	10
_tmp.00778.bed	550630	10
_tmp.00779.bed	627752	10
_tmp.00780.bed	386180	10
_tmp.00781.bed	673011	10
_tmp.00782.bed	564281	10
_tmp.00783.bed	476851	10
_tmp.00784.bed	626669	10
_tmp.00785.bed	613158	10
_tmp.00786.bed	525257	10
_tmp.00787.bed	410813	10
_tmp.00788.bed	595223	10
_tmp.00789.bed	611457	10
_tmp.00790.bed	456764	10
_tmp.00791.bed	509686	10
_tmp.00792.bed	616696	10
_tmp.00793.bed	341511	10
_tmp.00794.bed	520776	10
_tmp.00795.bed	383338	10
_tmp.00796.bed	538637	10
_tmp.00797.bed	305880	10
_tmp.00798.bed	523481	10
_tmp.00799.bed	475123	10
_tmp.00800.bed	501190	10
_tmp.00801.bed	580827	10
_tmp.00802.bed	477932	10
_tmp.00803.bed	523721	10
_tmp.00804.bed	532822	10
_tmp.00805.bed	507636	10
_tmp.00806.bed	538763	10
_tmp.00807.bed	422836	10
_tmp.00808.bed	569798	10
_tmp.00809.bed	559992	10
_tmp.00810.bed	529161	10
_tmp.00811.bed	492957	10
_tmp.00812.bed	411849	10
_tmp.00813.bed	547904	10
_tmp.00814.bed	505875	10
_tmp.00815.bed	435418	10
_tmp.00816.bed	447507	10
_tmp.00817.bed	498838	10
_tmp.00818.bed	570366	10
_tmp.00819.bed	528662	10
_tmp.00820.bed	511817	10
_tmp.00821.bed	495781	10
_tmp.00822.bed	520340	10
_tmp.00823.bed	460452	10
_tmp.00824.bed	518795	10
_tmp.00825.bed	476305	10
_tmp.00826.bed	438897	10
_tmp.00827.bed	411006	10
_tmp.00828.bed	546494	10
_tmp.00829.bed	308543	10
_tmp.00830.bed	520924	10
_tmp.00831.bed	578668	10
_tmp.00832.bed	663854	10
_tmp.00833.bed	546892	10
_tmp.00834.bed	531078	10
_tmp.00835.bed	454674	10
_tmp.00836.bed	518472	10
_tmp.00837.bed	504843	10
_tmp.00838.bed	379467	10
_tmp.00839.bed	478992	10
_tmp.00840.bed	455260	10
_tmp.00841.bed	543554	10
_tmp.00842.bed	450718	10
_tmp.00843.bed	346672	10
_tmp.00844.bed	422116	10
_tmp.00845.bed	528823	10
_tmp.00846.bed	425088	10
_tmp.00847.bed	611312	10
_tmp.00848.bed	518031	10
_tmp.00849.bed	337405	10
_tmp.00850.bed	452511	10
_tmp.00851.bed	394121	10
_tmp.00852.bed	588008	10
_tmp.00853.bed	525751	10
_tmp.00854.bed	530973	10
_tmp.00855.bed	545988	10
_tmp.00856.bed	490729	10
_tmp.00857.bed	478456	10
_tmp.00858.bed	604601	10
_tmp.00859.bed	423848	10
_tmp.00860.bed	443448	10
_tmp.00861.bed	553019	10
_tmp.00862.bed	552515	10
_tmp.00863.bed	346887	10
_tmp.00864.bed	439016	10
_tmp.00865.bed	589232	10
_tmp.00866.bed	361675	10
_tmp.00867.bed	520317	10
_tmp.00868.bed	278112	10
_tmp.00869.bed	530152	10
_tmp.00870.bed	613316	10
_tmp.00871.bed	626839	10
_tmp.00872.bed	644369	10
_tmp.00873.bed	431108	10
_tmp.00874.bed	565188	10
_tmp.00875.bed	541529	10
_tmp.00876.bed	499335	10
_tmp.00877.bed	575114	10
_tmp.00878.bed	483891	10
_tmp.00879.bed	644650	10
_tmp.00880.bed	355204	10
_tmp.00881.bed	473227	10
_tmp.00882.bed	587028	10
_tmp.00883.bed	426257	10
_tmp.00884.bed	563541	10
_tmp.00885.bed	425074	10
_tmp.00886.bed	331034	10
_tmp.00887.bed	601949	10
_tmp.00888.bed	630565	10
_tmp.00889.bed	455839	10
_tmp.00890.bed	653321	10
_tmp.00891.bed	506663	10
_tmp.00892.bed	361767	10
_tmp.00893.bed	551785	10
_tmp.00894.bed	550714	10
_tmp.00895.bed	576150	10
_tmp.00896.bed	625065	10
_tmp.00897.bed	546279	10
_tmp.00898.bed	548844	10
_tmp.00899.bed	367177	10
_tmp.00900.bed	578821	10
_tmp.00901.bed	389469	10
_tmp.00902.bed	552356	10
_tmp.00903.bed	395874	10
_tmp.00904.bed	654722	10
_tmp.00905.bed	615642	10
_tmp.00906.bed	496437	10
_tmp.00907.bed	425541	10
_tmp.00908.bed	546732	10
_tmp.00909.bed	501681	10
_tmp.00910.bed	595078	10
_tmp.00911.bed	439009	10
_tmp.00912.bed	379310	10
_tmp.00913.bed	410860	10
_tmp.00914.bed	640838	10
_tmp.00915.bed	478675	10
_tmp.00916.bed	674616	10
_tmp.00917.bed	411713	10
_tmp.00918.bed	547288	10
_tmp.00919.bed	593619	10
_tmp.00920.bed	394120	10
_tmp.00921.bed	389988	10
_tmp.00922.bed	533772	10
_tmp.00923.bed	395408	10
_tmp.00924.bed	498847	10
_tmp.00925.bed	406098	10
_tmp.00926.bed	418589	10
_tmp.00927.bed	472611	10
_tmp.00928.bed	441765	10
_tmp.00929.bed	349678	10
_tmp.00930.bed	458247	10
_tmp.00931.bed	341756	10
_tmp.00932.bed	450611	10
_tmp.00933.bed	558683	10
_tmp.00934.bed	457386	10
_tmp.00935.bed	422763	10
_tmp.00936.bed	748174	10
_tmp.00937.bed	498764	10
_tmp.00938.bed	497410	10
_tmp.00939.bed	509502	10
_tmp.00940.bed	626007	10
_tmp.00941.bed	336845	10
_tmp.00942.bed	488338	10
_tmp.00943.bed	610148	10
_tmp.00944.bed	573943	10
_tmp.00945.bed	711655	10
_tmp.00946.bed	325169	10
_tmp.00947.bed	388004	10
_tmp.00948.bed	571733	10
_tmp.00949.bed	448412	10
_tmp.00950.bed	376320	10
_tmp.00951.bed	586966	10
_tmp.00952.bed	571290	10
_tmp.00953.bed	447992	10
_tmp.00954.bed	663390	10
_tmp.00955.bed	528777	10
_tmp.00956.bed	603175	10
_tmp.00957.bed	546131	10
_tmp.00958.bed	496705	10
_tmp.00959.bed	550388	10
_tmp.00960.bed	485058	10
_tmp.00961.bed	576772	10
_tmp.00962.bed	682812	10
_tmp.00963.bed	416105	10
_tmp.00964.bed	517854	10
_tmp.00965.bed	412891	10
_tmp.00966.bed	664728	10
_tmp.00967.bed	506275	10
_tmp.00968.bed	334727	10
_tmp.00969.bed	403898	10
_tmp.00970.bed	481674	10
_tmp.00971.bed	592081	10
_tmp.00972.bed	421563	10
_tmp.00973.bed	501519	10
_tmp.00974.bed	565467	10
_tmp.00975.bed	628030	10
_tmp.00976.bed	455196	10
_tmp.00977.bed	445708	10
_tmp.00978.bed	402774	10
_tmp.00979.bed	467470	10
_tmp.00980.bed	481406	10
_tmp.00981.bed	437625	10
_tmp.00982.bed	644801	10
_tmp.00983.bed	341914	10
_tmp.00984.bed	353857	10
_tmp.00985.bed	305047	10
_tmp.00986.bed	312546	10
_tmp.00987.bed	556739	10
_tmp.00988.bed	509749	10
_tmp.00989.bed	594614	10
_tmp.00990.bed	399211	10
_tmp.00991.bed	426021	10
_tmp.00992.bed	484789	10
_tmp.00993.bed	438621	10
_tmp.00994.bed	382039	10
_tmp.00995.bed	418130	10
_tmp.00996.bed	481983	10
_tmp.00997.bed	646877	10
_tmp.00998.bed	475657	10
_tmp.00999.bed	543411	10
_tmp.01000.bed	443346	10
 Testing bedtools spacing:
    spacing.t01...\c
ok
make[1]: Leaving directory '/«PKGBUILDDIR»'
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
	rm -f debian/bedtools.substvars
	rm -f debian/bedtools.*.debhelper
	rm -rf debian/bedtools/
   dh_auto_install -a
	install -d debian/bedtools
	make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/«PKGBUILDDIR»'
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.24.0
CURRENT_VERSION  = v2.24.0
 * Creating BamTools API
- Building in src/utils/bedFile
make[2]: '../../../obj//bedFile.o' is up to date.
- Building in src/utils/BinTree
make[2]: '../../../obj//BinTree.o' is up to date.
- Building in src/utils/version
make[2]: Nothing to be done for 'all'.
- Building in src/utils/bedGraphFile
make[2]: '../../../obj//bedGraphFile.o' is up to date.
- Building in src/utils/chromsweep
make[2]: '../../../obj//chromsweep.o' is up to date.
- Building in src/utils/Contexts
make[2]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools
- Building in FileReaders
make[3]: Nothing to be done for 'all'.
- Building in Records
make[3]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools/FileReaders
make[2]: Nothing to be done for 'all'.
- Building in src/utils/FileRecordTools/Records
make[2]: Nothing to be done for 'all'.
- Building in src/utils/general
make[2]: Nothing to be done for 'all'.
- Building in src/utils/gzstream
make[2]: '../../../obj//gzstream.o' is up to date.
- Building in src/utils/fileType
make[2]: Nothing to be done for 'all'.
- Building in src/utils/bedFilePE
make[2]: '../../../obj//bedFilePE.o' is up to date.
- Building in src/utils/KeyListOps
make[2]: Nothing to be done for 'all'.
- Building in src/utils/NewChromsweep
make[2]: Nothing to be done for 'all'.
- Building in src/utils/sequenceUtilities
make[2]: '../../../obj//sequenceUtils.o' is up to date.
- Building in src/utils/tabFile
make[2]: '../../../obj//tabFile.o' is up to date.
- Building in src/utils/BamTools
make[2]: Nothing to be done for 'all'.
- Building in src/utils/BamTools-Ancillary
make[2]: Nothing to be done for 'all'.
- Building in src/utils/BlockedIntervals
make[2]: Nothing to be done for 'all'.
- Building in src/utils/Fasta
make[2]: Nothing to be done for 'all'.
- Building in src/utils/VectorOps
make[2]: '../../../obj//VectorOps.o' is up to date.
- Building in src/utils/GenomeFile
make[2]: '../../../obj//NewGenomeFile.o' is up to date.
- Building in src/utils/RecordOutputMgr
make[2]: '../../../obj//RecordOutputMgr.o' is up to date.
- Building in src/utils/ToolBase
make[2]: '../../../obj//ToolBase.o' is up to date.
- Building in src/utils/aux
make[2]: Nothing to be done for 'all'.
- Building in src/annotateBed
make[2]: Nothing to be done for 'all'.
- Building in src/bamToBed
make[2]: Nothing to be done for 'all'.
- Building in src/bamToFastq
make[2]: Nothing to be done for 'all'.
- Building in src/bedToBam
make[2]: Nothing to be done for 'all'.
- Building in src/bedpeToBam
make[2]: Nothing to be done for 'all'.
- Building in src/bedToIgv
make[2]: Nothing to be done for 'all'.
- Building in src/bed12ToBed6
make[2]: Nothing to be done for 'all'.
- Building in src/closestFile
make[2]: Nothing to be done for 'all'.
- Building in src/clusterBed
make[2]: Nothing to be done for 'all'.
- Building in src/complementBed
make[2]: Nothing to be done for 'all'.
- Building in src/coverageFile
make[2]: Nothing to be done for 'all'.
- Building in src/expand
make[2]: Nothing to be done for 'all'.
- Building in src/fastaFromBed
make[2]: Nothing to be done for 'all'.
- Building in src/flankBed
make[2]: Nothing to be done for 'all'.
- Building in src/genomeCoverageBed
make[2]: Nothing to be done for 'all'.
- Building in src/getOverlap
make[2]: Nothing to be done for 'all'.
- Building in src/groupBy
make[2]: Nothing to be done for 'all'.
- Building in src/intersectFile
make[2]: Nothing to be done for 'all'.
- Building in src/fisher
make[2]: Nothing to be done for 'all'.
- Building in src/jaccard
make[2]: Nothing to be done for 'all'.
- Building in src/linksBed
make[2]: Nothing to be done for 'all'.
- Building in src/maskFastaFromBed
make[2]: Nothing to be done for 'all'.
- Building in src/mapFile
make[2]: Nothing to be done for 'all'.
- Building in src/mergeFile
make[2]: Nothing to be done for 'all'.
- Building in src/multiBamCov
make[2]: Nothing to be done for 'all'.
- Building in src/multiIntersectBed
make[2]: Nothing to be done for 'all'.
- Building in src/nekSandbox1
make[2]: Nothing to be done for 'all'.
- Building in src/nucBed
make[2]: Nothing to be done for 'all'.
- Building in src/pairToBed
make[2]: Nothing to be done for 'all'.
- Building in src/pairToPair
make[2]: Nothing to be done for 'all'.
- Building in src/randomBed
make[2]: Nothing to be done for 'all'.
- Building in src/regressTest
compiling RegressTest.cpp
compiling regressTestMain.cpp
- Building in src/reldist
make[2]: Nothing to be done for 'all'.
- Building in src/sampleFile
make[2]: Nothing to be done for 'all'.
- Building in src/shuffleBed
make[2]: Nothing to be done for 'all'.
- Building in src/slopBed
make[2]: Nothing to be done for 'all'.
- Building in src/sortBed
make[2]: Nothing to be done for 'all'.
- Building in src/spacingFile
make[2]: Nothing to be done for 'all'.
- Building in src/split
make[2]: Nothing to be done for 'all'.
- Building in src/subtractFile
make[2]: Nothing to be done for 'all'.
- Building in src/tagBam
make[2]: Nothing to be done for 'all'.
- Building in src/unionBedGraphs
make[2]: Nothing to be done for 'all'.
- Building in src/windowBed
make[2]: Nothing to be done for 'all'.
- Building in src/windowMaker
make[2]: Nothing to be done for 'all'.
- Building main bedtools binary.
done.
- Creating executables for old CLI.
done.
mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/local/bin
for file in bin/* ; do \
	cp -f $file /«PKGBUILDDIR»/debian/tmp/usr/local/bin; \
done
make[1]: Leaving directory '/«PKGBUILDDIR»'
   debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_install
	install -d debian/bedtools/usr/bin
	cp --reflink=auto -a ./bin/annotateBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bamToBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bamToFastq debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bedpeToBam debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bedToBam debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bedToIgv debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/bedtools debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/closestBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/clusterBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/complementBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/coverageBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/expandCols debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/fastaFromBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/flankBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/getOverlap debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/groupBy debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/intersectBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/linksBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/mapBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/mergeBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/multiBamCov debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/multiIntersectBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/nucBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/pairToBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/pairToPair debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/randomBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/shuffleBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/slopBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/sortBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/subtractBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/tagBam debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/unionBedGraphs debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/windowBed debian/bedtools/usr/bin/
	cp --reflink=auto -a ./bin/windowMaker debian/bedtools/usr/bin/
	install -d debian/bedtools/usr/share/bedtools
	cp --reflink=auto -a ./genomes debian/bedtools/usr/share/bedtools/
	install -d debian/bedtools//usr/share/bash-completion/completions
	cp --reflink=auto -a ./debian/bash_completion/bedtools debian/bedtools//usr/share/bash-completion/completions/
rm -f /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
# make sure all *.sh files are featuring a '#!/bin/bash' as first line
# since there are at least two files (test/intersect/{new_test-intersect.sh,performanceTest.sh}
# requiring bash this is taken for all scripts instead of checking first via /bin/sh -n
for sh in `find /«PKGBUILDDIR»/debian -name "*.sh"` ; do \
    if ! head -n1 ${sh} | grep -q '^#! */bin/[ba]*sh' ; then \
        sed -i '1 i #!/bin/bash' ${sh} ; \
    fi ; \
done
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_installdocs -a
	install -d debian/bedtools/usr/share/doc/bedtools
	cp --reflink=auto -a README.md debian/bedtools/usr/share/doc/bedtools
	chown -R 0:0 debian/bedtools/usr/share/doc
	chmod -R go=rX debian/bedtools/usr/share/doc
	chmod -R u\+rw debian/bedtools/usr/share/doc
	install -p -m0644 debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installchangelogs RELEASE_HISTORY
	install -p -m0644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian
	install -p -m0644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_perl -a
   dh_link -a
   dh_compress -a
	cd debian/bedtools
	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
	cd '/«PKGBUILDDIR»'
   debian/rules override_dh_fixperms
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_fixperms
	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/bedtools/usr/share/doc -type f  ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/bedtools/usr/lib/arm-linux-gnueabihf/perl5/5.20 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/bedtools/usr/bin -type f  -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
chmod -x /«PKGBUILDDIR»/debian/bedtools/usr/share/bedtools/genomes/*.genome
find /«PKGBUILDDIR»/debian -name "*.bed" -executable -exec chmod -x \{\} \;
find /«PKGBUILDDIR»/debian -name "*.sh"  -not -executable -exec chmod +x \{\} \;
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_strip -a
	strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
   dh_makeshlibs -a
	rm -f debian/bedtools/DEBIAN/shlibs
   dh_shlibdeps -a
	install -d debian/bedtools/DEBIAN
	dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
dpkg-shlibdeps: warning: debian/bedtools/usr/bin/bedtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
	echo misc:Depends= >> debian/bedtools.substvars
	echo misc:Pre-Depends= >> debian/bedtools.substvars
	dpkg-gencontrol -pbedtools -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
	chmod 0644 debian/bedtools/DEBIAN/control
	chown 0:0 debian/bedtools/DEBIAN/control
   dh_md5sums -a
	(cd debian/bedtools >/dev/null ; find . -type f  ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 0644 debian/bedtools/DEBIAN/md5sums
	chown 0:0 debian/bedtools/DEBIAN/md5sums
   dh_builddeb -a
	dpkg-deb --build debian/bedtools ..
dpkg-deb: building package `bedtools' in `../bedtools_2.24.0-2_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bedtools_2.24.0-2_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build bedtools-2.24.0
dpkg-source: info: using options from bedtools-2.24.0/debian/source/options: --single-debian-patch
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150722-0559

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


bedtools_2.24.0-2_armhf.changes:
────────────────────────────────

Format: 1.8
Date: Thu, 16 Jul 2015 14:33:38 +0200
Source: bedtools
Binary: bedtools bedtools-test
Architecture: armhf
Version: 2.24.0-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 bedtools   - suite of utilities for comparing genomic features
 bedtools-test - test data for the bedtools package
Closes: 791830
Changes:
 bedtools (2.24.0-2) unstable; urgency=medium
 .
   * Tests need bgzip from tabix package
   * Add missing input files for tests
   * link to genomes files in autopkgtests to enable more tests passing
   * Fix MIPS build issue (Thanks for picking the patch from upstream
     Arturo Borrero Gonzalez <arturo.borrero.glez@gmail.com>)
     Closes: #791830
Checksums-Sha1:
 0f25e85b46574dd990715d58be987f52b0ddfba7 507594 bedtools_2.24.0-2_armhf.deb
Checksums-Sha256:
 7f3c6fbf07c72a19c57f5462ceb9c52a0c66c2c0893eb70dea04a5b91859742e 507594 bedtools_2.24.0-2_armhf.deb
Files:
 ceb1c0d333eeb4a30d83a611f22d644d 507594 science optional bedtools_2.24.0-2_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


bedtools_2.24.0-2_armhf.deb
───────────────────────────

 new debian package, version 2.0.
 size 507594 bytes: control archive=2145 bytes.
     836 bytes,    18 lines      control              
    2748 bytes,    47 lines      md5sums              
 Package: bedtools
 Version: 2.24.0-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1762
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.9), zlib1g (>= 1:1.2.3.3)
 Suggests: filo
 Section: science
 Priority: optional
 Homepage: http://code.google.com/p/bedtools/
 Description: suite of utilities for comparing genomic features
  The BEDTools utilities allow one to address common genomics tasks such as
  finding feature overlaps and computing coverage. The utilities are largely
  based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
  BEDTools, one can develop sophisticated pipelines that answer complicated
  research questions by streaming several BEDTools together.
  .
  The groupBy utility is distributed in the filo package.

drwxr-xr-x root/root         0 2015-07-22 05:58 ./
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/bin/
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/annotateBed
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/bamToBed
-rwxr-xr-x root/root        43 2015-07-22 05:58 ./usr/bin/bamToFastq
-rwxr-xr-x root/root        44 2015-07-22 05:58 ./usr/bin/bed12ToBed6
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/bedToBam
-rwxr-xr-x root/root        36 2015-07-22 05:58 ./usr/bin/bedToIgv
-rwxr-xr-x root/root        43 2015-07-22 05:58 ./usr/bin/bedpeToBam
-rwxr-xr-x root/root   1756400 2015-07-22 05:58 ./usr/bin/bedtools
-rwxr-xr-x root/root        40 2015-07-22 05:58 ./usr/bin/closestBed
-rwxr-xr-x root/root        40 2015-07-22 05:58 ./usr/bin/clusterBed
-rwxr-xr-x root/root        43 2015-07-22 05:58 ./usr/bin/complementBed
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/coverageBed
-rwxr-xr-x root/root        39 2015-07-22 05:58 ./usr/bin/expandCols
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/fastaFromBed
-rwxr-xr-x root/root        38 2015-07-22 05:58 ./usr/bin/flankBed
-rwxr-xr-x root/root        42 2015-07-22 05:58 ./usr/bin/genomeCoverageBed
-rwxr-xr-x root/root        40 2015-07-22 05:58 ./usr/bin/getOverlap
-rwxr-xr-x root/root        42 2015-07-22 05:58 ./usr/bin/intersectBed
-rwxr-xr-x root/root        38 2015-07-22 05:58 ./usr/bin/linksBed
-rwxr-xr-x root/root        36 2015-07-22 05:58 ./usr/bin/mapBed
-rwxr-xr-x root/root        42 2015-07-22 05:58 ./usr/bin/maskFastaFromBed
-rwxr-xr-x root/root        38 2015-07-22 05:58 ./usr/bin/mergeBed
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/multiBamCov
-rwxr-xr-x root/root        43 2015-07-22 05:58 ./usr/bin/multiIntersectBed
-rwxr-xr-x root/root        36 2015-07-22 05:58 ./usr/bin/nucBed
-rwxr-xr-x root/root        42 2015-07-22 05:58 ./usr/bin/pairToBed
-rwxr-xr-x root/root        43 2015-07-22 05:58 ./usr/bin/pairToPair
-rwxr-xr-x root/root        39 2015-07-22 05:58 ./usr/bin/randomBed
-rwxr-xr-x root/root        40 2015-07-22 05:58 ./usr/bin/shuffleBed
-rwxr-xr-x root/root        37 2015-07-22 05:58 ./usr/bin/slopBed
-rwxr-xr-x root/root        37 2015-07-22 05:58 ./usr/bin/sortBed
-rwxr-xr-x root/root        41 2015-07-22 05:58 ./usr/bin/subtractBed
-rwxr-xr-x root/root        36 2015-07-22 05:58 ./usr/bin/tagBam
-rwxr-xr-x root/root        42 2015-07-22 05:58 ./usr/bin/unionBedGraphs
-rwxr-xr-x root/root        39 2015-07-22 05:58 ./usr/bin/windowBed
-rwxr-xr-x root/root        44 2015-07-22 05:58 ./usr/bin/windowMaker
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/bash-completion/
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/bash-completion/completions/
-rw-r--r-- root/root       638 2015-07-16 12:33 ./usr/share/bash-completion/completions/bedtools
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/bedtools/
drwxr-xr-x root/root         0 2015-05-28 00:44 ./usr/share/bedtools/genomes/
-rw-r--r-- root/root       856 2015-05-28 00:44 ./usr/share/bedtools/genomes/human.hg18.genome
-rw-r--r-- root/root      1972 2015-05-28 00:44 ./usr/share/bedtools/genomes/human.hg19.genome
-rw-r--r-- root/root     11672 2015-05-28 00:44 ./usr/share/bedtools/genomes/human.hg38.genome
-rw-r--r-- root/root      1607 2015-05-28 00:44 ./usr/share/bedtools/genomes/mouse.mm10.genome.txt
-rw-r--r-- root/root       565 2015-05-28 00:44 ./usr/share/bedtools/genomes/mouse.mm8.genome
-rw-r--r-- root/root       585 2015-05-28 00:44 ./usr/share/bedtools/genomes/mouse.mm9.genome
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-07-22 05:58 ./usr/share/doc/bedtools/
-rw-r--r-- root/root      3346 2015-05-28 00:44 ./usr/share/doc/bedtools/README.md
-rw-r--r-- root/root      2274 2015-07-16 12:33 ./usr/share/doc/bedtools/changelog.Debian.gz
-rw-r--r-- root/root     15699 2015-05-28 00:44 ./usr/share/doc/bedtools/changelog.gz
-rw-r--r-- root/root      5353 2015-07-16 12:33 ./usr/share/doc/bedtools/copyright


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 65160
Build-Time: 1391
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 233
Job: bedtools_2.24.0-2
Machine Architecture: armhf
Package: bedtools
Package-Time: 1693
Source-Version: 2.24.0-2
Space: 65160
Status: successful
Version: 2.24.0-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20150722-0559
Build needed 00:28:13, 65160k disc space