Raspbian Package Auto-Building

Build log for bedtools (2.17.0-1) on armhf

bedtools2.17.0-1armhf → 2013-05-20 21:24:22

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on debian-armhf

╔══════════════════════════════════════════════════════════════════════════════╗
║ bedtools 2.17.0-1 (armhf)                                  20 May 2013 21:04 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: bedtools
Version: 2.17.0-1
Source Version: 2.17.0-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/bedtools-RJu4Ov/bedtools-2.17.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bedtools-RJu4Ov' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-eb36b8f5-845b-4521-9b7a-44066bf113ca' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Hit http://172.17.0.1 jessie-staging Release.gpg
Hit http://172.17.0.1 jessie-staging Release
Hit http://172.17.0.1 jessie-staging/main Sources
Hit http://172.17.0.1 jessie-staging/main armhf Packages
Ign http://172.17.0.1 jessie-staging/main Translation-en
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/bedtools.git
Need to get 1216 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main bedtools 2.17.0-1 (dsc) [1951 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main bedtools 2.17.0-1 (tar) [1209 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bedtools 2.17.0-1 (diff) [5663 B]
Fetched 1216 kB in 1s (705 kB/s)
Download complete and in download only mode

Check arch
──────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-VG0S5M/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11288 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-UjdgcP/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bedtools build dependencies (apt-based resolver)                     │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
  libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libsqlite3-0
  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
  python-minimal python2.7 python2.7-minimal quilt zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
  www-browser libmail-box-perl python-doc python-tk python2.7-doc
  binfmt-support procmail graphviz default-mta mail-transport-agent
Recommended packages:
  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
  xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
  libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libsqlite3-0
  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
  python-minimal python2.7 python2.7-minimal quilt
  sbuild-build-depends-bedtools-dummy zlib1g-dev
0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
Need to get 16.0 MB/16.0 MB of archives.
After this operation, 44.4 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpcre3 armhf 1:8.30-5 [242 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.1-1 [35.0 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-2+rpi1 [1049 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 5.11-2 [199 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.7.13-1+deb7u1 [414 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [822 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libffi5 armhf 3.0.10-3+b3 [22.9 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.33.12+really2.32.4-5 [1689 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.6-2 [119 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-1 [117 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libgettextpo0 armhf 0.18.1.1-9 [130 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.3 [207 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.21-9 [1071 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.2-1 [1027 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main file armhf 5.11-2 [51.4 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.1.1-9 [138 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.52-2 [35.2 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.3-6 [1664 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.3-6 [2706 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main python-minimal all 2.7.3-5 [41.8 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main python all 2.7.3-5 [184 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main cdbs all 0.4.121 [80.5 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main html2text armhf 1.3.2a-15 [98.5 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.1.1-9 [1879 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20120909 [705 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main diffstat armhf 1.55-3 [28.6 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main quilt all 0.60-8 [381 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.7.dfsg-13 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 16.0 MB in 18s (865 kB/s)
Selecting previously unselected package libpcre3:armhf.
(Reading database ... 11288 files and directories currently installed.)
Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ...
Selecting previously unselected package libpipeline1:armhf.
Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ...
Selecting previously unselected package libssl1.0.0:armhf.
Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1e-2+rpi1_armhf.deb) ...
Selecting previously unselected package libasprintf0c2:armhf.
Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package libmagic1:armhf.
Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ...
Selecting previously unselected package libsqlite3-0:armhf.
Unpacking libsqlite3-0:armhf (from .../libsqlite3-0_3.7.13-1+deb7u1_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-7+nmu1_armhf.deb) ...
Selecting previously unselected package libffi5:armhf.
Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.33.12+really2.32.4-5_armhf.deb) ...
Selecting previously unselected package libcroco3:armhf.
Unpacking libcroco3:armhf (from .../libcroco3_0.6.6-2_armhf.deb) ...
Selecting previously unselected package libexpat1:armhf.
Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ...
Selecting previously unselected package libgettextpo0:armhf.
Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ...
Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-2_armhf.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package mime-support.
Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
Selecting previously unselected package python2.7-minimal.
Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-6_armhf.deb) ...
Selecting previously unselected package python2.7.
Unpacking python2.7 (from .../python2.7_2.7.3-6_armhf.deb) ...
Selecting previously unselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.7.3-5_all.deb) ...
Selecting previously unselected package python.
Unpacking python (from .../python_2.7.3-5_all.deb) ...
Selecting previously unselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ...
Selecting previously unselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
Selecting previously unselected package diffstat.
Unpacking diffstat (from .../diffstat_1.55-3_armhf.deb) ...
Selecting previously unselected package quilt.
Unpacking quilt (from .../archives/quilt_0.60-8_all.deb) ...
Selecting previously unselected package zlib1g-dev:armhf.
Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armhf.deb) ...
Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
Unpacking sbuild-build-depends-bedtools-dummy (from .../sbuild-build-depends-bedtools-dummy.deb) ...
Setting up libpcre3:armhf (1:8.30-5) ...
Setting up libpipeline1:armhf (1.2.1-1) ...
Setting up libssl1.0.0:armhf (1.0.1e-2+rpi1) ...
Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
Setting up libmagic1:armhf (5.11-2) ...
Setting up libsqlite3-0:armhf (3.7.13-1+deb7u1) ...
Setting up libxml2:armhf (2.8.0+dfsg1-7+nmu1) ...
Setting up libffi5:armhf (3.0.10-3+b3) ...
Setting up libglib2.0-0:armhf (2.33.12+really2.32.4-5) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.6-2) ...
Setting up libexpat1:armhf (2.1.0-1) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libgettextpo0:armhf (0.18.1.1-9) ...
Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up groff-base (1.21-9) ...
Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-2) ...
Setting up gettext-base (0.18.1.1-9) ...
Setting up mime-support (3.52-2) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up python2.7-minimal (2.7.3-6) ...
Setting up python2.7 (2.7.3-6) ...
Setting up python-minimal (2.7.3-5) ...
Setting up python (2.7.3-5) ...
Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120909) ...
Setting up diffstat (1.55-3) ...
Setting up quilt (0.60-8) ...
Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ...
Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.9.1-imx4 armhf (armv7l)
Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.3-14+rpi1 gcc-4.6_4.6.3-14+rpi1 libc6-dev_2.13-38+rpi2 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.3 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.5 cpio_2.11+dfsg-0.1 cpp_4:4.6.3-8 cpp-4.6_4.6.3-14+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20120909 debianutils_4.3.2 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 g++_4:4.6.3-8 g++-4.6_4.6.3-14+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-14+rpi1 gcc-4.6-base_4.6.3-14+rpi1 gcc-4.7-base_4.7.2-5+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initramfs-tools_0.112 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libc-bin_2.13-38+rpi2 libc-dev-bin_2.13-38+rpi2 libc6_2.13-38+rpi2 libc6-dev_2.13-38+rpi2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdb5.1_5.1.29-5 libdbus-1-3_1.6.8-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5+rpi1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncursesw5_5.9-10 libnih-dbus1_1.0.3-4.1 libnih1_1.0.3-4.1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-9 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libprocps0_1:3.3.3-3 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsqlite3-0_3.7.13-1+deb7u1 libss2_1.42.5-1.1 libssl1.0.0_1.0.1e-2+rpi1 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-10 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libxml2_2.8.0+dfsg1-7+nmu1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-92 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-2 mount_2.20.1-5.3 mountall_2.46 multiarch-support_2.13-38+rpi2 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.5.1-5 po-debconf_1.0.16+nmu2 procps_1:3.3.3-3 python_2.7.3-5 python-minimal_2.7.3-5 python2.7_2.7.3-6 python2.7-minimal_2.7.3-6 quilt_0.60-8 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-bedtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tzdata_2013b-2 udev_175-7.2 util-linux_2.20.1-5.3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
dpkg-source: info: extracting bedtools in bedtools-2.17.0
dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
dpkg-source: info: applying gzstream.h.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-eb36b8f5-845b-4521-9b7a-44066bf113ca
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 53109 22
SSH_CONNECTION=192.168.1.2 53109 192.168.1.45 22
SSH_TTY=/dev/pts/1
TERM=xterm
USER=root
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1369081280.146676-2082782793
_=/etc/init.d/buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package bedtools
dpkg-buildpackage: source version 2.17.0-1
dpkg-buildpackage: source changed by Charles Plessy <plessy@debian.org>
 dpkg-source --before-build bedtools-2.17.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
make[1]: Entering directory `/«PKGBUILDDIR»'
 * Cleaning-up BamTools API
 * Cleaning up.
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_clean 
	rm -f debian/bedtools.substvars
	rm -f debian/bedtools.*.debhelper
	rm -rf debian/bedtools/
	rm -f debian/*.debhelper.log
	rm -f debian/files
	find .  \( \( -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} \; \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
	rm -f *-stamp
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ -d "." ]; then \
	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
	fi
Removing patch gzstream.h.patch
Restoring src/utils/gzstream/gzstream.C

No patches applied
rm -rf ./.pc
rm -f debian/stamp-patch*
 debian/rules build-arch
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
Applying patch gzstream.h.patch
patching file src/utils/gzstream/gzstream.C

Now at patch gzstream.h.patch
touch debian/stamp-patched
/usr/bin/make -f debian/rules update-config
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
/usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
make[1]: Entering directory `/«PKGBUILDDIR»'
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.17.0
CURRENT_VERSION  = 
Updating version file.
 * Creating BamTools API
- Building in src/utils/bedFile
  * compiling bedFile.cpp
- Building in src/utils/version
  * compiling version.cpp
- Building in src/utils/bedGraphFile
  * compiling bedGraphFile.cpp
- Building in src/utils/chromsweep
  * compiling chromsweep.cpp
- Building in src/utils/gzstream
g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
- Building in src/utils/fileType
  * compiling fileType.cpp
- Building in src/utils/bedFilePE
  * compiling bedFilePE.cpp
- Building in src/utils/sequenceUtilities
  * compiling sequenceUtils.cpp
- Building in src/utils/tabFile
  * compiling tabFile.cpp
- Building in src/utils/BamTools
 * compiling BamAlignment.cpp
 * compiling BamMultiReader.cpp
 * compiling BamReader.cpp
 * compiling BamWriter.cpp
 * compiling SamHeader.cpp
 * compiling SamProgram.cpp
 * compiling SamProgramChain.cpp
 * compiling SamReadGroup.cpp
 * compiling SamReadGroupDictionary.cpp
 * compiling SamSequence.cpp
 * compiling SamSequenceDictionary.cpp
 * compiling BamHeader_p.cpp
 * compiling BamMultiReader_p.cpp
 * compiling BamRandomAccessController_p.cpp
 * compiling BamReader_p.cpp
 * compiling BamWriter_p.cpp
 * compiling BamIndexFactory_p.cpp
 * compiling BamStandardIndex_p.cpp
 * compiling BamToolsIndex_p.cpp
 * compiling BamDeviceFactory_p.cpp
 * compiling BamFile_p.cpp
 * compiling BamFtp_p.cpp
 * compiling BamHttp_p.cpp
 * compiling BamPipe_p.cpp
 * compiling BgzfStream_p.cpp
 * compiling ByteArray_p.cpp
 * compiling HostAddress_p.cpp
 * compiling HostInfo_p.cpp
 * compiling HttpHeader_p.cpp
 * compiling ILocalIODevice_p.cpp
 * compiling RollingBuffer_p.cpp
 * compiling TcpSocketEngine_p.cpp
 * compiling TcpSocketEngine_unix_p.cpp
 * compiling TcpSocket_p.cpp
 * compiling SamFormatParser_p.cpp
 * compiling SamFormatPrinter_p.cpp
 * compiling SamHeaderValidator_p.cpp
 * compiling BamException_p.cpp
 * linking lib/libbamtools.a
ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o
ranlib lib/libbamtools.a
- Building in src/utils/BamTools-Ancillary
  * compiling BamAncillary.cpp
  * compiling BamAncillary.cpp
- Building in src/utils/BlockedIntervals
  * compiling BlockedIntervals.cpp
  * compiling BlockedIntervals.cpp
- Building in src/utils/Fasta
  * compiling Fasta.cpp
Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
  * compiling Fasta.cpp
Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
  * compiling split.cpp
  * compiling split.cpp
- Building in src/utils/VectorOps
  * compiling VectorOps.cpp
- Building in src/utils/genomeFile
  * compiling genomeFile.cpp
genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
- Building in src/annotateBed
  * compiling annotateMain.cpp
annotateMain.cpp: In function 'int annotate_main(int, char**)':
annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
  * compiling annotateBed.cpp
- Building in src/bamToBed
  * compiling bamToBed.cpp
bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
- Building in src/bamToFastq
  * compiling bamToFastqMain.cpp
bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
  * compiling bamToFastq.cpp
- Building in src/bedToBam
  * compiling bedToBam.cpp
bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
- Building in src/bedpeToBam
  * compiling bedpeToBam.cpp
bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
- Building in src/bedToIgv
  * compiling bedToIgv.cpp
- Building in src/bed12ToBed6
  * compiling bed12ToBed6.cpp
- Building in src/closestBed
  * compiling closestMain.cpp
  * compiling closestBed.cpp
- Building in src/clusterBed
  * compiling clusterMain.cpp
clusterMain.cpp: In function 'int cluster_main(int, char**)':
clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
  * compiling clusterBed.cpp
- Building in src/complementBed
  * compiling complementMain.cpp
  * compiling complementBed.cpp
- Building in src/coverageBed
  * compiling coverageMain.cpp
  * compiling coverageBed.cpp
- Building in src/expand
  * compiling expand.cpp
- Building in src/fastaFromBed
  * compiling fastaFromBedMain.cpp
  * compiling fastaFromBed.cpp
- Building in src/flankBed
  * compiling flankBedMain.cpp
  * compiling flankBed.cpp
- Building in src/genomeCoverageBed
  * compiling genomeCoverageMain.cpp
  * compiling genomeCoverageBed.cpp
- Building in src/getOverlap
  * compiling getOverlap.cpp
getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
- Building in src/groupBy
  * compiling groupBy.cpp
groupBy.cpp: In function 'int groupby_main(int, char**)':
groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
- Building in src/intersectBed
  * compiling intersectMain.cpp
  * compiling intersectBed.cpp
- Building in src/jaccard
  * compiling jaccardMain.cpp
  * compiling jaccard.cpp
- Building in src/linksBed
  * compiling linksMain.cpp
  * compiling linksBed.cpp
- Building in src/maskFastaFromBed
  * compiling maskFastaFromBedMain.cpp
  * compiling maskFastaFromBed.cpp
- Building in src/mapBed
  * compiling mapMain.cpp
mapMain.cpp: In function 'int map_main(int, char**)':
mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
  * compiling mapBed.cpp
- Building in src/mergeBed
  * compiling mergeMain.cpp
mergeMain.cpp: In function 'int merge_main(int, char**)':
mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
  * compiling mergeBed.cpp
- Building in src/multiBamCov
  * compiling multiBamCovMain.cpp
multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
  * compiling multiBamCov.cpp
- Building in src/multiIntersectBed
  * compiling multiIntersectBedMain.cpp
multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
  * compiling multiIntersectBed.cpp
- Building in src/nucBed
  * compiling nucBedMain.cpp
  * compiling nucBed.cpp
- Building in src/pairToBed
  * compiling pairToBedMain.cpp
pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
  * compiling pairToBed.cpp
pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
- Building in src/pairToPair
  * compiling pairToPairMain.cpp
pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
  * compiling pairToPair.cpp
pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
- Building in src/randomBed
  * compiling randomBedMain.cpp
  * compiling randomBed.cpp
- Building in src/shuffleBed
  * compiling shuffleBedMain.cpp
  * compiling shuffleBed.cpp
- Building in src/slopBed
  * compiling slopBedMain.cpp
  * compiling slopBed.cpp
- Building in src/sortBed
  * compiling sortMain.cpp
  * compiling sortBed.cpp
- Building in src/subtractBed
  * compiling subtractMain.cpp
subtractMain.cpp: In function 'int subtract_main(int, char**)':
subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
  * compiling subtractBed.cpp
- Building in src/tagBam
  * compiling tagBamMain.cpp
tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
  * compiling tagBam.cpp
- Building in src/unionBedGraphs
  * compiling unionBedGraphsMain.cpp
unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
  * compiling unionBedGraphs.cpp
- Building in src/windowBed
  * compiling windowMain.cpp
  * compiling windowBed.cpp
- Building in src/windowMaker
  * compiling windowMakerMain.cpp
  * compiling windowMaker.cpp
- Building main bedtools binary.
done.
- Creating executables for old CLI.
done.
make[1]: Leaving directory `/«PKGBUILDDIR»'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
 fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep 
	rm -f debian/bedtools.substvars
	rm -f debian/bedtools.*.debhelper
	rm -rf debian/bedtools/
dh_installdirs -A 
	install -d debian/bedtools
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
DEB_MAKE_CHECK_TARGET unset, not running checks
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
Adding cdbs dependencies to debian/bedtools.substvars
dh_installdirs -pbedtools 
dh_installdocs -pbedtools 
	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
	chown -R 0:0 debian/bedtools/usr/share/doc
	chmod -R go=rX debian/bedtools/usr/share/doc
	chmod -R u\+rw debian/bedtools/usr/share/doc
	install -g 0 -o 0 -m 644 -p debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright
dh_installexamples -pbedtools 
dh_installman -pbedtools  
dh_installinfo -pbedtools  
dh_installmenu -pbedtools 
dh_installcron -pbedtools 
dh_installinit -pbedtools  
dh_installdebconf -pbedtools 
	install -o 0 -g 0 -d debian/bedtools/DEBIAN
dh_installemacsen -pbedtools   
dh_installcatalogs -pbedtools 
	grep -s -v '^misc:Depends=' debian/bedtools.substvars > debian/bedtools.substvars.new || true
	mv debian/bedtools.substvars.new debian/bedtools.substvars
dh_installpam -pbedtools 
dh_installlogrotate -pbedtools 
dh_installlogcheck -pbedtools 
dh_installchangelogs -pbedtools  RELEASE_HISTORY 
	install -o 0 -g 0 -p -m644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian
	install -o 0 -g 0 -p -m644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog
dh_installudev -pbedtools 
dh_lintian -pbedtools 
dh_bugfiles -pbedtools 
dh_install -pbedtools  
	install -d debian/bedtools/usr/bin
	cp -a ./bin/annotateBed debian/bedtools/usr/bin/
	cp -a ./bin/bamToBed debian/bedtools/usr/bin/
	cp -a ./bin/bamToFastq debian/bedtools/usr/bin/
	cp -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/
	cp -a ./bin/bedpeToBam debian/bedtools/usr/bin/
	cp -a ./bin/bedToBam debian/bedtools/usr/bin/
	cp -a ./bin/bedToIgv debian/bedtools/usr/bin/
	cp -a ./bin/bedtools debian/bedtools/usr/bin/
	cp -a ./bin/closestBed debian/bedtools/usr/bin/
	cp -a ./bin/clusterBed debian/bedtools/usr/bin/
	cp -a ./bin/complementBed debian/bedtools/usr/bin/
	cp -a ./bin/coverageBed debian/bedtools/usr/bin/
	cp -a ./bin/expandCols debian/bedtools/usr/bin/
	cp -a ./bin/fastaFromBed debian/bedtools/usr/bin/
	cp -a ./bin/flankBed debian/bedtools/usr/bin/
	cp -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/
	cp -a ./bin/getOverlap debian/bedtools/usr/bin/
	cp -a ./bin/groupBy debian/bedtools/usr/bin/
	cp -a ./bin/intersectBed debian/bedtools/usr/bin/
	cp -a ./bin/linksBed debian/bedtools/usr/bin/
	cp -a ./bin/mapBed debian/bedtools/usr/bin/
	cp -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/
	cp -a ./bin/mergeBed debian/bedtools/usr/bin/
	cp -a ./bin/multiBamCov debian/bedtools/usr/bin/
	cp -a ./bin/multiIntersectBed debian/bedtools/usr/bin/
	cp -a ./bin/nucBed debian/bedtools/usr/bin/
	cp -a ./bin/pairToBed debian/bedtools/usr/bin/
	cp -a ./bin/pairToPair debian/bedtools/usr/bin/
	cp -a ./bin/randomBed debian/bedtools/usr/bin/
	cp -a ./bin/shuffleBed debian/bedtools/usr/bin/
	cp -a ./bin/slopBed debian/bedtools/usr/bin/
	cp -a ./bin/sortBed debian/bedtools/usr/bin/
	cp -a ./bin/subtractBed debian/bedtools/usr/bin/
	cp -a ./bin/tagBam debian/bedtools/usr/bin/
	cp -a ./bin/unionBedGraphs debian/bedtools/usr/bin/
	cp -a ./bin/windowBed debian/bedtools/usr/bin/
	cp -a ./bin/windowMaker debian/bedtools/usr/bin/
	install -d debian/bedtools/usr/share/bedtools
	cp -a ./genomes debian/bedtools/usr/share/bedtools/
	install -d debian/bedtools/usr/share/bedtools/test
	cp -a ./test/bamtobed debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/bed12tobed6 debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/closest debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/cluster debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/coverage debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/expand debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/flank debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/general debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/genomecov debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/getfasta debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/groupBy debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/intersect debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/jaccard debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
	install -d debian/bedtools/etc/bash_completion.d
	cp -a ./debian/bash_completion/bedtools debian/bedtools/etc/bash_completion.d/
dh_link -pbedtools  
dh_installmime -pbedtools 
dh_installgsettings -pbedtools 
dh_strip -pbedtools  
	strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
dh_compress -pbedtools -X test 
	cd debian/bedtools
	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
	cd '/«PKGBUILDDIR»'
dh_fixperms -pbedtools  
	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/bedtools/usr/share/doc -type f  ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/bedtools/usr/lib/perl5 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/bedtools/usr/bin -type f  -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pbedtools  
	rm -f debian/bedtools/DEBIAN/shlibs
rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
dh_installdeb -pbedtools 
	find debian/bedtools/etc -type f -printf '/etc/%P
' >> debian/bedtools/DEBIAN/conffiles
	chmod 644 debian/bedtools/DEBIAN/conffiles
dh_perl -pbedtools 
dh_shlibdeps -pbedtools    
	dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
dh_gencontrol -pbedtools  
	echo misc:Depends= >> debian/bedtools.substvars
	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
	chmod 644 debian/bedtools/DEBIAN/control
	chown 0:0 debian/bedtools/DEBIAN/control
dh_md5sums -pbedtools 
	(cd debian/bedtools >/dev/null ; find . -type f ! -path "./etc/bash_completion.d/bedtools"  ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/bedtools/DEBIAN/md5sums
	chown 0:0 debian/bedtools/DEBIAN/md5sums
dh_builddeb -pbedtools -- -Z xz
	dpkg-deb -Z xz --build debian/bedtools ..
dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_armhf.deb'.
 dpkg-genchanges -B >../bedtools_2.17.0-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build bedtools-2.17.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130520-2124

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


bedtools_2.17.0-1_armhf.changes:
────────────────────────────────

Format: 1.8
Date: Sun, 04 Nov 2012 17:59:41 +0900
Source: bedtools
Binary: bedtools
Architecture: armhf
Version: 2.17.0-1
Distribution: jessie-staging
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 bedtools   - suite of utilities for comparing genomic features
Changes: 
 bedtools (2.17.0-1) unstable; urgency=low
 .
   bb9012e Imported Upstream version 2.16.2.
   9006b23 Imported Upstream version 2.17.0.
   9112569 Documented BEDTools license as a whole.
   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
   a781b14 Conforms with Policy 3.9.4.
   84b1167 Use Debhelper 9.
   0bf572d Distribute the test suite.
   422cd34 Bash completion for BEDTools.
Checksums-Sha1: 
 8a3116385ead5b13b95cf305595c2d26b620ed41 378578 bedtools_2.17.0-1_armhf.deb
Checksums-Sha256: 
 97196ace7a87fbf191e7a60b2301b09cab827d1f5e231c6f48360c9ca1d1c353 378578 bedtools_2.17.0-1_armhf.deb
Files: 
 0c7d513a545e2693dd881d1cbbf16370 378578 science optional bedtools_2.17.0-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


bedtools_2.17.0-1_armhf.deb
───────────────────────────

 new debian package, version 2.0.
 size 378578 bytes: control archive=4110 bytes.
      32 bytes,     1 lines      conffiles            
     837 bytes,    18 lines      control              
    9605 bytes,   132 lines      md5sums              
 Package: bedtools
 Version: 2.17.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1304
 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
 Suggests: filo
 Section: science
 Priority: optional
 Homepage: http://code.google.com/p/bedtools/
 Description: suite of utilities for comparing genomic features
  The BEDTools utilities allow one to address common genomics tasks such as
  finding feature overlaps and computing coverage. The utilities are largely
  based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
  BEDTools, one can develop sophisticated pipelines that answer complicated
  research questions by streaming several BEDTools together.
  .
  The groupBy utility is distribued in the filo package.

drwxr-xr-x root/root         0 2013-05-20 21:23 ./
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/share/
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/share/doc/
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/share/doc/bedtools/
-rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
-rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
-rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/share/bedtools/
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/genomes/
-rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
-rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
-rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
-rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/share/bedtools/test/
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/bamtobed/
-rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
-rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
-rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/bed12tobed6/
-rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
-rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
-rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
-rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
-rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/closest/
-rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
-rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
-rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
-rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
-rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
-rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/cluster/
-rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
-rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/coverage/
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
-rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
-rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
-rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
-rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
-rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
-rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/expand/
-rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
-rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/flank/
-rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
-rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
-rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/general/
-rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/genomecov/
-rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
-rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
-rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
-rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
-rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
-rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/getfasta/
-rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
-rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
-rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
-rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
-rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/groupBy/
-rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
-rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/intersect/
-rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
-rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
-rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
-rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
-rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
-rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
-rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
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-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
-rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
-rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/jaccard/
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-rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
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drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/map/
-rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
-rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
-rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
-rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
-rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/merge/
-rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
-rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
-rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
-rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/multicov/
-rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
-rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
-rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
-rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
-rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/slop/
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-rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
drwxr-xr-x root/root         0 2013-05-20 21:07 ./usr/share/bedtools/test/subtract/
-rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
-rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
-rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
-rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
drwxr-xr-x root/root         0 2013-05-20 21:23 ./usr/bin/
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/annotateBed
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/bamToBed
-rwxr-xr-x root/root        43 2013-05-20 21:23 ./usr/bin/bamToFastq
-rwxr-xr-x root/root        44 2013-05-20 21:23 ./usr/bin/bed12ToBed6
-rwxr-xr-x root/root        43 2013-05-20 21:23 ./usr/bin/bedpeToBam
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/bedToBam
-rwxr-xr-x root/root        36 2013-05-20 21:23 ./usr/bin/bedToIgv
-rwxr-xr-x root/root        40 2013-05-20 21:23 ./usr/bin/closestBed
-rwxr-xr-x root/root        40 2013-05-20 21:23 ./usr/bin/clusterBed
-rwxr-xr-x root/root        43 2013-05-20 21:23 ./usr/bin/complementBed
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/coverageBed
-rwxr-xr-x root/root        39 2013-05-20 21:23 ./usr/bin/expandCols
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/fastaFromBed
-rwxr-xr-x root/root        38 2013-05-20 21:23 ./usr/bin/flankBed
-rwxr-xr-x root/root        42 2013-05-20 21:23 ./usr/bin/genomeCoverageBed
-rwxr-xr-x root/root        40 2013-05-20 21:23 ./usr/bin/getOverlap
-rwxr-xr-x root/root        42 2013-05-20 21:23 ./usr/bin/intersectBed
-rwxr-xr-x root/root        38 2013-05-20 21:23 ./usr/bin/linksBed
-rwxr-xr-x root/root        36 2013-05-20 21:23 ./usr/bin/mapBed
-rwxr-xr-x root/root        42 2013-05-20 21:23 ./usr/bin/maskFastaFromBed
-rwxr-xr-x root/root        38 2013-05-20 21:23 ./usr/bin/mergeBed
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/multiBamCov
-rwxr-xr-x root/root        43 2013-05-20 21:23 ./usr/bin/multiIntersectBed
-rwxr-xr-x root/root        36 2013-05-20 21:23 ./usr/bin/nucBed
-rwxr-xr-x root/root        42 2013-05-20 21:23 ./usr/bin/pairToBed
-rwxr-xr-x root/root        43 2013-05-20 21:23 ./usr/bin/pairToPair
-rwxr-xr-x root/root        39 2013-05-20 21:23 ./usr/bin/randomBed
-rwxr-xr-x root/root        40 2013-05-20 21:23 ./usr/bin/shuffleBed
-rwxr-xr-x root/root        37 2013-05-20 21:23 ./usr/bin/slopBed
-rwxr-xr-x root/root        37 2013-05-20 21:23 ./usr/bin/sortBed
-rwxr-xr-x root/root        41 2013-05-20 21:23 ./usr/bin/subtractBed
-rwxr-xr-x root/root        36 2013-05-20 21:23 ./usr/bin/tagBam
-rwxr-xr-x root/root        42 2013-05-20 21:23 ./usr/bin/unionBedGraphs
-rwxr-xr-x root/root        39 2013-05-20 21:23 ./usr/bin/windowBed
-rwxr-xr-x root/root        44 2013-05-20 21:23 ./usr/bin/windowMaker
-rwxr-xr-x root/root   1247484 2013-05-20 21:23 ./usr/bin/bedtools
drwxr-xr-x root/root         0 2013-05-20 21:23 ./etc/
drwxr-xr-x root/root         0 2013-05-20 21:23 ./etc/bash_completion.d/
-rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 77680
Build-Time: 1021
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 161
Job: bedtools_2.17.0-1
Machine Architecture: armhf
Package: bedtools
Package-Time: 1200
Source-Version: 2.17.0-1
Space: 77680
Status: successful
Version: 2.17.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130520-2124
Build needed 00:20:00, 77680k disc space