bedops →
2.4.32+dfsg-2 →
armhf → 2018-04-01 04:56:26
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| bedops 2.4.32+dfsg-2 (armhf) Sun, 01 Apr 2018 04:38:23 +0000 |
+==============================================================================+
Package: bedops
Version: 2.4.32+dfsg-2
Source Version: 2.4.32+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-12a62da9-107f-4317-aa5e-b363e87ed809' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.1 MB in 15s (1558 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bedops' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/debian-med/bedops.git
Please use:
git clone https://anonscm.debian.org/debian-med/bedops.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 15.3 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bedops 2.4.32+dfsg-2 (dsc) [2129 B]
Get:2 http://172.17.0.1/private buster-staging/main bedops 2.4.32+dfsg-2 (tar) [15.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main bedops 2.4.32+dfsg-2 (diff) [6916 B]
Fetched 15.3 MB in 7s (2162 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bedops-M1ZaNF/bedops-2.4.32+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bedops-M1ZaNF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-bR8DSS/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-bR8DSS/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-bR8DSS/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Packages [435 B]
Fetched 2111 B in 0s (10.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (69.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15657 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), help2man, libbz2-dev, libjansson-dev, libjs-mathjax, python3-distutils, python3-sphinx, zlib1g-dev
Filtered Build-Depends: debhelper (>= 11~), help2man, libbz2-dev, libjansson-dev, libjs-mathjax, python3-distutils, python3-sphinx, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-bedops-dummy' in '/<<BUILDDIR>>/resolver-bR8DSS/apt_archive/sbuild-build-depends-bedops-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bedops-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Sources [545 B]
Get:5 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ Packages [628 B]
Fetched 2506 B in 0s (12.6 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bedops build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libbsd0 libbz2-dev libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjansson-dev
libjansson4 libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore
liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf
python-babel-localedata python3 python3-alabaster python3-babel
python3-certifi python3-chardet python3-distutils python3-docutils
python3-idna python3-imagesize python3-jinja2 python3-lib2to3
python3-markupsafe python3-minimal python3-pkg-resources python3-pygments
python3-requests python3-roman python3-six python3-sphinx python3-tz
python3-urllib3 python3.6 python3.6-minimal sgml-base sphinx-common xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv docutils-doc
fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-jinja2-doc
python3-setuptools ttf-bitstream-vera python3-cryptography python3-openssl
python3-socks python3-sphinx-rtd-theme dvipng texlive-latex-extra
texlive-fonts-recommended texlive-generic-extra latexmk imagemagick-6.q16
sphinx-doc python3.6-venv python3.6-doc binfmt-support sgml-base-doc
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common libltdl-dev
libmail-sendmail-perl libpaper-utils python3-pil
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libbsd0 libbz2-dev libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjansson-dev
libjansson4 libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore
liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf
python-babel-localedata python3 python3-alabaster python3-babel
python3-certifi python3-chardet python3-distutils python3-docutils
python3-idna python3-imagesize python3-jinja2 python3-lib2to3
python3-markupsafe python3-minimal python3-pkg-resources python3-pygments
python3-requests python3-roman python3-six python3-sphinx python3-tz
python3-urllib3 python3.6 python3.6-minimal
sbuild-build-depends-bedops-dummy sgml-base sphinx-common xml-core
zlib1g-dev
0 upgraded, 75 newly installed, 0 to remove and 9 not upgraded.
Need to get 28.9 MB/38.0 MB of archives.
After this operation, 169 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-bR8DSS/apt_archive ./ sbuild-build-depends-bedops-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b2 [18.3 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.2-1 [1145 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.5~rc1-1 [565 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.5~rc1-1 [1234 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.5~rc1-1 [1585 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5~rc1-1 [79.0 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5~rc1-1 [147 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.5~rc1-1 [229 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.4-1 [19.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180326 [93.2 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.4-1 [22.3 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.0-4 [2749 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.5 [1007 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-3 [204 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.3+dfsg-1 [2209 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf help2man armhf 1.47.6 [169 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libjansson4 armhf 2.11-1 [26.3 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libjansson-dev armhf 2.11-1 [26.4 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.3+dfsg-1 [5656 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.6.7-2 [85.5 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 39.0.1-1 [142 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.3-2 [26.8 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python3-babel all 2.4.0+dfsg.1-2 [83.7 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.1.18-2 [144 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-1 [80.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:52 http://172.17.0.1/private buster-staging/main armhf python3-docutils all 0.14+dfsg-3 [377 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf python3-imagesize all 0.7.1-1 [3886 B]
Get:55 http://172.17.0.1/private buster-staging/main armhf python3-markupsafe armhf 1.0-1+b1 [14.1 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf python3-jinja2 all 2.10-1 [106 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf python3-pygments all 2.2.0+dfsg-1 [588 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.11.0-2 [15.2 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.22-1 [97.9 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.18.4-2 [77.1 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.6.7-2 [420 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf python3-sphinx all 1.6.7-2 [459 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up python3-requests (2.18.4-2) ...
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Processing triggers for libc-bin (2.27-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-8+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-2+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180321-1+rpi1 linux-libc-dev_4.15.11-1+rpi1
Package versions: adduser_3.117 apt_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4.18-1.1 binutils_2.30-8+rpi1 binutils-arm-linux-gnueabihf_2.30-8+rpi1 binutils-common_2.30-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.1.5 debianutils_4.8.4 dh-autoreconf_17 dh-python_3.20180326 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 docutils-common_0.14+dfsg-3 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.0-1 e2fsprogs_1.44.0-1 e2fsprogs-l10n_1.44.0-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.32-2 findutils_4.6.0+git+20171230-2 fonts-mathjax_2.7.3+dfsg-1 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8-20180321-1+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 help2man_1.47.6 hostname_3.20 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8-20180321-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-8+rpi1 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-2+rpi1 libc-dev-bin_2.27-2+rpi1 libc6_2.27-2+rpi1 libc6-dev_2.27-2+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180321-1+rpi1 libcilkrts5_7.3.0-12 libcom-err2_1.44.0-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.241 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libexpat1_2.2.5-3 libext2fs2_1.44.0-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.3.0-12 libgcc1_1:8-20180321-1+rpi1 libgcrypt20_1.8.1-4 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.0-4 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180321-1+rpi1 libgpg-error0_1.28-2 libhogweed4_3.4-1 libicu57_57.1-9 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libjansson-dev_2.11-1 libjansson4_2.11-1 libjs-jquery_3.2.1-1 libjs-mathjax_2.7.3+dfsg-1 libjs-sphinxdoc_1.6.7-2 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblocale-gettext-perl_1.07-3+b2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpdec2_2.4.2-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnpth0_1.5-3 libnss-systemd_238-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-3 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-4 libpython3-stdlib_3.6.4-1 libpython3.6-minimal_3.6.5~rc1-1 libpython3.6-stdlib_3.6.5~rc1-1 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.22.0-2 libss2_1.44.0-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180321-1+rpi1 libsystemd0_238-3 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtool_2.4.6-2 libubsan0_7.3.0-12 libudev1_238-3 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.15.11-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.2-1 mawk_1.3.3-17 mime-support_3.60 mount_2.31.1-0.5 multiarch-support_2.27-2+rpi1 nano_2.9.4-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-4 python-babel-localedata_2.4.0+dfsg.1-2 python3_3.6.4-1 python3-alabaster_0.7.8-1 python3-babel_2.4.0+dfsg.1-2 python3-certifi_2018.1.18-2 python3-chardet_3.0.4-1 python3-distutils_3.6.5~rc1-1 python3-docutils_0.14+dfsg-3 python3-idna_2.6-1 python3-imagesize_0.7.1-1 python3-jinja2_2.10-1 python3-lib2to3_3.6.5~rc1-1 python3-markupsafe_1.0-1+b1 python3-minimal_3.6.4-1 python3-pkg-resources_39.0.1-1 python3-pygments_2.2.0+dfsg-1 python3-requests_2.18.4-2 python3-roman_2.0.0-3 python3-six_1.11.0-2 python3-sphinx_1.6.7-2 python3-tz_2018.3-2 python3-urllib3_1.22-1 python3.6_3.6.5~rc1-1 python3.6-minimal_3.6.5~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-bedops-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.6.7-2 systemd_238-3 systemd-sysv_238-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_238-3 util-linux_2.31.1-0.5 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Mar 27 08:41:18 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bedops_2.4.32+dfsg-2.dsc
dpkg-source: info: extracting bedops in /<<BUILDDIR>>/bedops-2.4.32+dfsg
dpkg-source: info: unpacking bedops_2.4.32+dfsg.orig.tar.xz
dpkg-source: info: unpacking bedops_2.4.32+dfsg-2.debian.tar.xz
dpkg-source: info: applying use_debian_libs
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-12a62da9-107f-4317-aa5e-b363e87ed809
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bedops
dpkg-buildpackage: info: source version 2.4.32+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bedops-2.4.32+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with sphinxdoc
dh_auto_clean
make -j4 -O clean
make clean -j 8 -f system.mk/Makefile.linux
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[2]: warning: -jN forced in submake: disabling jobserver mode.
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make -C applications/bed/bedmap/src -f Makefile clean
make -C applications/bed/sort-bed/src -f Makefile clean
make -C applications/bed/bedops/src -f Makefile clean
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
rm -rf bin
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make -C applications/bed/closestfeats/src -f Makefile clean
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
rm -rf bin
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make -C applications/bed/bedextract/src -f Makefile clean
make -C applications/bed/starch/src -f Makefile clean
make -C applications/bed/conversion/src -f Makefile clean
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
rm -rf bin
rm -rf modules
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
rm -rf objects_typical
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
rm -rf objects_typical
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
rm -rf objects_typical
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
rm -rf objects_typical
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
rm -rf objects-typical
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
rm -rf ../bin
rm -rf objects
rm -rf *.so *~
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
make[3]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
rm -rf ../lib
rm -f ../lib/libstarch_debug.a
rm -f ../lib/libstarch_gprof.a
rm -rf objects
rm -rf ../bin
make[3]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
rm -rf third-party/bzip2-1.0.6
rm -f third-party/bzip2
rm -rf third-party/jansson-2.6
rm -f third-party/jansson
rm -rf third-party/zlib-1.2.7
rm -f third-party/zlib
rm -rf bin
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
dh_clean
debian/rules build-arch
dh build-arch --with sphinxdoc
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 -O "INSTALL=install --strip-program=true"
make -j 8 -f system.mk/Makefile.linux
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[2]: warning: -jN forced in submake: disabling jobserver mode.
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#bzcat | tar -x -C third-party
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#cd third-party/jansson-2.6 && ./configure --prefix=/<<BUILDDIR>>/bedops-2.4.32+dfsg/third-party/jansson-2.6 && make && make install && cd /<<BUILDDIR>>/bedops-2.4.32+dfsg && rm -f jansson && ln -sf jansson-2.6 third-party/jansson
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#bzcat | tar -x -C third-party
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#cd third-party/bzip2-1.0.6 && make libbz2.a && cd /<<BUILDDIR>>/bedops-2.4.32+dfsg && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2
make[2]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#bzcat | tar -x -C third-party
make[2]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
#cd third-party/zlib-1.2.7 && ./configure --static && make && cd /<<BUILDDIR>>/bedops-2.4.32+dfsg && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib
make build -f /<<BUILDDIR>>/bedops-2.4.32+dfsg/system.mk/Makefile.linux
make -C applications/bed/bedmap/src -f Makefile build
make -C applications/bed/sort-bed/src -f Makefile build
make -C applications/bed/bedops/src -f Makefile build
make -C applications/bed/closestfeats/src -f Makefile build
make -C applications/bed/bedextract/src -f Makefile build
make -C applications/bed/starch/src -f Makefile build
make -C applications/bed/conversion/src -f Makefile build
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects-typical/starchConstants.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../..
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects-typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects-typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function 'int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, starch::Metadata**, starch::CompressionType*, starch::ArchiveVersion**, char**, char**, uint64_t*, starch::Boolean*, starch::Boolean, starch::Boolean)':
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:982:24: warning: comparison is always true due to limited range of data type [-Wtype-limits]
} while (currC != EOF);
^
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects-typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function 'int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, starch::Metadata**, starch::CompressionType*, starch::ArchiveVersion**, char**, char**, uint64_t*, starch::Boolean*, starch::Boolean, starch::Boolean)':
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:982:24: warning: comparison is always true due to limited range of data type [-Wtype-limits]
} while (currC != EOF);
^
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderedBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:1974:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:2663:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c: In function 'int starch::STARCH2_transformHeaderlessBEDInput(const FILE*, starch::Metadata**, starch::CompressionType, const char*, const char*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
../../../../interfaces/src/data/starch/starchHelpers.c:3130:77: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
../../../../interfaces/src/data/starch/starchHelpers.c:3837:57: warning: left shift count >= width of type [-Wshift-count-overflow]
bzBytesWritten = (size_t) bzBytesWrittenHi32 << 32 | bzBytesWrittenLo32;
^~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../..
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p objects
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../..
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
cp starchcluster_sge.tcsh ../bin/starchcluster_sge-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
cp starch-diff.py ../bin/starch-diff-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../lib
ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starch.o -o ../bin/starch-typical ../lib/libstarch.a -ljansson -lz -lbz2 -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects-typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3 -iquote"/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src" -iquote"../../../../interfaces/general-headers" convert2bed.c -o ../bin/convert2bed-typical -lpthread
convert2bed.c: In function 'c2b_process_intermediate_bytes_by_lines':
convert2bed.c:5842:103: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'long unsigned int' [-Wformat=]
fprintf(stderr, "Error: Could not find newline in intermediate buffer; check input [%zu | %zu | %zu]\n", (unsigned long) src_bytes_read, (unsigned long) remainder_length, (unsigned long) src_buffer_capacity);
~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
%lu
convert2bed.c:5842:109: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr, "Error: Could not find newline in intermediate buffer; check input [%zu | %zu | %zu]\n", (unsigned long) src_bytes_read, (unsigned long) remainder_length, (unsigned long) src_buffer_capacity);
~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
%lu
convert2bed.c:5842:115: warning: format '%zu' expects argument of type 'size_t', but argument 5 has type 'long unsigned int' [-Wformat=]
fprintf(stderr, "Error: Could not find newline in intermediate buffer; check input [%zu | %zu | %zu]\n", (unsigned long) src_bytes_read, (unsigned long) remainder_length, (unsigned long) src_buffer_capacity);
~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
%lu
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
rm -rf objects
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/conversion/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects-typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects-typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/unstarch.o -o ../bin/unstarch-typical ../lib/libstarch.a -ljansson -lz -lbz2 -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects-typical/Sort.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchstrip.o -o ../bin/starchstrip-typical ../lib/libstarch.a -ljansson -lz -lbz2 -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p objects_typical && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
mkdir -p ../bin
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../..
starchcat.c:6672:5: warning: this use of "defined" may not be portable [-Wexpansion-to-defined]
#if CLANG_COMPILER
^~~~~~~~~~~~~~
starchcat.c:6678:5: warning: this use of "defined" may not be portable [-Wexpansion-to-defined]
#if CLANG_COMPILER
^~~~~~~~~~~~~~
starchcat.c: In function 'int starch::STARCHCAT2_rewriteInputRecordToOutput(starch::Metadata**, const char*, starch::CompressionType, const char*, const MetadataRecord*, size_t*, starch::Boolean, starch::Boolean, Bed::LineCountType)':
starchcat.c:2038:67: warning: left shift count >= width of type [-Wshift-count-overflow]
bzOutBytesWritten = (size_t) bzOutBytesWrittenHi32 << 32 | bzOutBytesWrittenLo32;
^~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchcat.o -o ../bin/starchcat-typical ../lib/libstarch.a -ljansson -lz -lbz2 -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
rm -rf objects
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/starch/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects-typical/SortDetails.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p objects-typical && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects-typical/CheckSort.o -iquote../../../../interfaces/general-headers
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
mkdir -p ../bin && g++ -o ../bin/sort-bed-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now objects-typical/starchConstants.o objects-typical/starchFileHelpers.o objects-typical/starchHelpers.o objects-typical/starchMetadataHelpers.o objects-typical/unstarchHelpers.o objects-typical/starchSha1Digest.o objects-typical/starchBase64Coding.o objects-typical/SortDetails.o objects-typical/Sort.o objects-typical/CheckSort.o -ljansson -lz -lbz2
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
rm -rf objects-typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/sort-bed/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
mkdir -p ../bin && g++ -o ../bin/bedextract-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now -ljansson -lz -lbz2 ExtractRows.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
rm -rf objects_typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedextract/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
mkdir -p ../bin && g++ -o ../bin/closest-features-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now -ljansson -lz -lbz2 ClosestFeature.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
rm -rf objects_typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/closestfeats/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
mkdir -p ../bin && g++ -o ../bin/bedops-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now -ljansson -lz -lbz2 Bedops.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
rm -rf objects_typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedops/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
mkdir -p ../bin && g++ -o ../bin/bedmap-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now -ljansson -lz -lbz2 Bedmap.cpp
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../../../../interfaces/general-headers/data/bed/BedDistances.hpp:28,
from ../../../../interfaces/general-headers/algorithm/WindowSweep.hpp:27,
from ../../../../interfaces/general-headers/algorithm/visitors/bed/BedBaseVisitor.hpp:31,
from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:27,
from Bedmap.cpp:35:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../../../../interfaces/general-headers/data/bed/BedDistances.hpp:28,
from ../../../../interfaces/general-headers/algorithm/WindowSweep.hpp:27,
from ../../../../interfaces/general-headers/algorithm/visitors/bed/BedBaseVisitor.hpp:31,
from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:27,
from Bedmap.cpp:35:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::nth_element(_RAIter, _RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algo.h:4750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
nth_element(_RandomAccessIterator __first, _RandomAccessIterator __nth,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:4750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4765:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__introselect(__first, __nth, __last,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/algorithm/visitors/NumericalVisitors.hpp:32:0,
from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:34,
from Bedmap.cpp:35:
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::Visitor<Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::Visitor<Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapMapping, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapMapping, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::Visitor<Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::Visitor<Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapMapping, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapMapping, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapReference, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapReference, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapReference, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapReference, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapBoth, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapBoth, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapBoth, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapBoth, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapEither, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapEither, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapEither, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::PercentOverlapEither, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::RangedDist, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::RangedDist, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::RangedDist, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::RangedDist, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::Overlapping, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::Overlapping, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::Overlapping, Bed::BasicCoords<true, true>, Bed::Bed5<Bed::Bed4<Bed::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp: In member function 'void Visitors::MedianAbsoluteDeviation<Process, BaseVisitor, ExceptionType>::DoneReference() [with Process = Visitors::BedHelpers::PrintScorePrecision; BaseVisitor = Visitors::BedBaseVisitor<Bed::Overlapping, Bed::NoPool::BasicCoords<true, true>, Bed::NoPool::Bed5<Bed::NoPool::Bed4<Bed::NoPool::BasicCoords<true, true>, true>, double, true> >; ExceptionType = Ext::Exception<Ext::Exception<std::exception, 3>, 2>]':
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:99:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:102:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:107:25: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
std::nth_element(vec.begin(), n, vec.end());
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
make[4]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
rm -rf objects_typical
make[4]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg/applications/bed/bedmap/src'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with sphinxdoc
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 -O install DESTDIR=/<<BUILDDIR>>/bedops-2.4.32\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
mkdir -p bin
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
cp applications/bed/conversion/src/wrappers/gvf2starch applications/bed/conversion/src/wrappers/bam2bed_gnuParallel applications/bed/conversion/src/wrappers/bam2starch_sge applications/bed/conversion/src/wrappers/bam2starch_slurm applications/bed/conversion/src/wrappers/psl2bed applications/bed/conversion/src/wrappers/bam2starch_gnuParallel applications/bed/conversion/src/wrappers/gff2starch applications/bed/conversion/src/wrappers/wig2bed applications/bed/conversion/src/wrappers/sam2bed applications/bed/conversion/src/wrappers/psl2starch applications/bed/conversion/src/wrappers/rmsk2bed applications/bed/conversion/src/wrappers/gtf2bed applications/bed/conversion/src/wrappers/vcf2bed applications/bed/conversion/src/wrappers/wig2starch applications/bed/conversion/src/wrappers/sam2starch applications/bed/conversion/src/wrappers/vcf2starch applications/bed/conversion/src/wrappers/rmsk2starch applications/bed/conversion/src/wrappers/bam2bed applications/bed/conversion/src/wrappers/gtf2starch applications/bed/conversion/src/wrappers/gff2bed applications/bed/conversion/src/wrappers/bam2starch applications/bed/conversion/src/wrappers/gvf2bed applications/bed/conversion/src/wrappers/bam2bed_sge applications/bed/conversion/src/wrappers/bam2bed_slurm bin
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
cp applications/bed/starch/bin/starchcluster_sge-typical bin/starchcluster_sge
cp applications/bed/starch/bin/starchcluster_gnuParallel-typical bin/starchcluster_gnuParallel
cp applications/bed/starch/bin/starchcluster_slurm-typical bin/starchcluster_slurm
cp applications/bed/starch/bin/starch-diff-typical bin/starch-diff
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
cp applications/bed/sort-bed/bin/sort-bed-typical bin/sort-bed
cp applications/bed/sort-bed/bin/update-sort-bed-slurm-typical bin/update-sort-bed-slurm
cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm-typical bin/update-sort-bed-starch-slurm
cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates-typical bin/update-sort-bed-migrate-candidates
cp applications/bed/bedops/bin/bedops-typical bin/bedops
cp applications/bed/closestfeats/bin/closest-features-typical bin/closest-features
cp applications/bed/bedmap/bin/bedmap-typical bin/bedmap
cp applications/bed/bedextract/bin/bedextract-typical bin/bedextract
cp applications/bed/starch/bin/starch-typical bin/starch
cp applications/bed/starch/bin/unstarch-typical bin/unstarch
cp applications/bed/starch/bin/starchcat-typical bin/starchcat
cp applications/bed/starch/bin/starchstrip-typical bin/starchstrip
cp applications/bed/conversion/bin/convert2bed-typical bin/convert2bed
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
dh_install -a
sed -i 's:/bin/tcsh:/usr/bin/tcsh:g' bin/*
mv bin/starch bin/bedops-starch
mkdir -p debian/bedops/usr/bin/
cp bin/* debian/bedops/usr/bin/
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
dh_installdocs -a
dh_sphinxdoc -a
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a
debian/rules override_dh_installman-arch
make[1]: Entering directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
cd bin && for f in * ; do help2man --no-discard-stderr --version-string="2.4.32+dfsg" -o $f.1 ./$f; done
help2man: can't get `--help' info from ./bam2bed_gnuParallel
help2man: can't get `--help' info from ./bam2bed_sge
help2man: can't get `--help' info from ./bam2bed_slurm
help2man: can't get `--help' info from ./bam2starch_gnuParallel
help2man: can't get `--help' info from ./bam2starch_sge
help2man: can't get `--help' info from ./bam2starch_slurm
help2man: can't get `--help' info from ./starchcluster_gnuParallel
help2man: can't get `--help' info from ./starchcluster_sge
help2man: can't get `--help' info from ./starchcluster_slurm
dh_installman -a
make[1]: Leaving directory '/<<BUILDDIR>>/bedops-2.4.32+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/bedops/usr/bin/bedops contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bedops/usr/bin/bedextract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bedops/usr/bin/sort-bed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bedops/usr/bin/closest-features contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bedops/usr/bin/bedmap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bedops/usr/bin/bedops-starch debian/bedops/usr/bin/bedops debian/bedops/usr/bin/bedextract debian/bedops/usr/bin/starchstrip debian/bedops/usr/bin/closest-features debian/bedops/usr/bin/starchcat debian/bedops/usr/bin/unstarch debian/bedops/usr/bin/bedmap were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'bedops-dbgsym' in '../bedops-dbgsym_2.4.32+dfsg-2_armhf.deb'.
dpkg-deb: building package 'bedops' in '../bedops_2.4.32+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bedops_2.4.32+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bedops-2.4.32+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-04-01T04:56:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bedops_2.4.32+dfsg-2_armhf.changes:
-----------------------------------
Format: 1.8
Date: Tue, 27 Mar 2018 10:10:36 +0200
Source: bedops
Binary: bedops bedops-doc
Architecture: armhf
Version: 2.4.32+dfsg-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
bedops - high-performance genomic feature operations
bedops-doc - high-performance genomic feature operations (documentation)
Closes: 894143 894156
Changes:
bedops (2.4.32+dfsg-2) unstable; urgency=medium
.
* Team upload.
.
[ Adrian Bunk ]
* less debug info to avoid running out of address space
Closes: #894156
.
[ Andreas Tille ]
* bedops-doc: Breaks: bedops (<= 2.4.32) (due to separated documentation)
Closes: #894143
Checksums-Sha1:
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bfbbd8ae16b7a4844c631f54e2e261181b42dc9e 6065 bedops_2.4.32+dfsg-2_armhf.buildinfo
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Checksums-Sha256:
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Files:
ea8fe05e8120b10a1a5bf96054604359 4164 debug optional bedops-dbgsym_2.4.32+dfsg-2_armhf.deb
bed40b5bd5d1103bdaa4a028a16c7d9d 6065 science optional bedops_2.4.32+dfsg-2_armhf.buildinfo
791dc08fc020f17f09231186d7bd5d4d 810760 science optional bedops_2.4.32+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bedops-dbgsym_2.4.32+dfsg-2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 4164 bytes: control archive=536 bytes.
377 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: bedops-dbgsym
Source: bedops
Version: 2.4.32+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 21
Depends: bedops (= 2.4.32+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for bedops
Build-Ids: cbc3372e275e3c631750af72be8923b33b0f6830
drwxr-xr-x root/root 0 2018-03-27 08:10 ./
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/lib/debug/.build-id/cb/
-rw-r--r-- root/root 10708 2018-03-27 08:10 ./usr/lib/debug/.build-id/cb/c3372e275e3c631750af72be8923b33b0f6830.debug
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-03-27 08:10 ./usr/share/doc/bedops-dbgsym -> bedops
bedops_2.4.32+dfsg-2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 810760 bytes: control archive=2580 bytes.
729 bytes, 15 lines control
4710 bytes, 76 lines md5sums
Package: bedops
Version: 2.4.32+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5932
Depends: libbz2-1.0, libc6 (>= 2.7), libgcc1 (>= 1:3.5), libjansson4 (>= 2.3), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), python, tcsh
Section: science
Priority: optional
Homepage: https://github.com/bedops/bedops
Description: high-performance genomic feature operations
BEDOPS is a suite of tools to address common questions raised in genomic
studies, mostly with regard to overlap and proximity relationships between
data sets.
It aims to be scalable and flexible, facilitating the efficient and accurate
analysis and management of large-scale genomic data.
drwxr-xr-x root/root 0 2018-03-27 08:10 ./
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/bin/
-rwxr-xr-x root/root 4711 2018-03-27 08:10 ./usr/bin/bam2bed
-rwxr-xr-x root/root 4505 2018-03-27 08:10 ./usr/bin/bam2bed_gnuParallel
-rwxr-xr-x root/root 5030 2018-03-27 08:10 ./usr/bin/bam2bed_sge
-rwxr-xr-x root/root 5025 2018-03-27 08:10 ./usr/bin/bam2bed_slurm
-rwxr-xr-x root/root 5842 2018-03-27 08:10 ./usr/bin/bam2starch
-rwxr-xr-x root/root 4511 2018-03-27 08:10 ./usr/bin/bam2starch_gnuParallel
-rwxr-xr-x root/root 5084 2018-03-27 08:10 ./usr/bin/bam2starch_sge
-rwxr-xr-x root/root 5018 2018-03-27 08:10 ./usr/bin/bam2starch_slurm
-rwxr-xr-x root/root 157112 2018-03-27 08:10 ./usr/bin/bedextract
-rwxr-xr-x root/root 4425168 2018-03-27 08:10 ./usr/bin/bedmap
-rwxr-xr-x root/root 325048 2018-03-27 08:10 ./usr/bin/bedops
-rwxr-xr-x root/root 75332 2018-03-27 08:10 ./usr/bin/bedops-starch
-rwxr-xr-x root/root 193980 2018-03-27 08:10 ./usr/bin/closest-features
-rwxr-xr-x root/root 100568 2018-03-27 08:10 ./usr/bin/convert2bed
-rwxr-xr-x root/root 3773 2018-03-27 08:10 ./usr/bin/gff2bed
-rwxr-xr-x root/root 4904 2018-03-27 08:10 ./usr/bin/gff2starch
-rwxr-xr-x root/root 3532 2018-03-27 08:10 ./usr/bin/gtf2bed
-rwxr-xr-x root/root 4663 2018-03-27 08:10 ./usr/bin/gtf2starch
-rwxr-xr-x root/root 3773 2018-03-27 08:10 ./usr/bin/gvf2bed
-rwxr-xr-x root/root 4904 2018-03-27 08:10 ./usr/bin/gvf2starch
-rwxr-xr-x root/root 3976 2018-03-27 08:10 ./usr/bin/psl2bed
-rwxr-xr-x root/root 5107 2018-03-27 08:10 ./usr/bin/psl2starch
-rwxr-xr-x root/root 3776 2018-03-27 08:10 ./usr/bin/rmsk2bed
-rwxr-xr-x root/root 4907 2018-03-27 08:10 ./usr/bin/rmsk2starch
-rwxr-xr-x root/root 4711 2018-03-27 08:10 ./usr/bin/sam2bed
-rwxr-xr-x root/root 5842 2018-03-27 08:10 ./usr/bin/sam2starch
-rwxr-xr-x root/root 185780 2018-03-27 08:10 ./usr/bin/sort-bed
-rwxr-xr-x root/root 10260 2018-03-27 08:10 ./usr/bin/starch-diff
-rwxr-xr-x root/root 140852 2018-03-27 08:10 ./usr/bin/starchcat
-rwxr-xr-x root/root 4303 2018-03-27 08:10 ./usr/bin/starchcluster_gnuParallel
-rwxr-xr-x root/root 4818 2018-03-27 08:10 ./usr/bin/starchcluster_sge
-rwxr-xr-x root/root 4720 2018-03-27 08:10 ./usr/bin/starchcluster_slurm
-rwxr-xr-x root/root 79364 2018-03-27 08:10 ./usr/bin/starchstrip
-rwxr-xr-x root/root 103860 2018-03-27 08:10 ./usr/bin/unstarch
-rwxr-xr-x root/root 32771 2018-03-27 08:10 ./usr/bin/update-sort-bed-migrate-candidates
-rwxr-xr-x root/root 20786 2018-03-27 08:10 ./usr/bin/update-sort-bed-slurm
-rwxr-xr-x root/root 22767 2018-03-27 08:10 ./usr/bin/update-sort-bed-starch-slurm
-rwxr-xr-x root/root 4675 2018-03-27 08:10 ./usr/bin/vcf2bed
-rwxr-xr-x root/root 5806 2018-03-27 08:10 ./usr/bin/vcf2starch
-rwxr-xr-x root/root 4598 2018-03-27 08:10 ./usr/bin/wig2bed
-rwxr-xr-x root/root 5729 2018-03-27 08:10 ./usr/bin/wig2starch
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/doc/bedops/
-rw-r--r-- root/root 267 2018-03-27 08:10 ./usr/share/doc/bedops/README.Debian
-rw-r--r-- root/root 728 2018-03-27 08:10 ./usr/share/doc/bedops/changelog.Debian.gz
-rw-r--r-- root/root 1129 2018-03-27 08:10 ./usr/share/doc/bedops/copyright
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/man/
drwxr-xr-x root/root 0 2018-03-27 08:10 ./usr/share/man/man1/
-rw-r--r-- root/root 348 2018-03-27 08:10 ./usr/share/man/man1/bam2bed.1.gz
-rw-r--r-- root/root 353 2018-03-27 08:10 ./usr/share/man/man1/bam2starch.1.gz
-rw-r--r-- root/root 846 2018-03-27 08:10 ./usr/share/man/man1/bedextract.1.gz
-rw-r--r-- root/root 2507 2018-03-27 08:10 ./usr/share/man/man1/bedmap.1.gz
-rw-r--r-- root/root 1042 2018-03-27 08:10 ./usr/share/man/man1/bedops-starch.1.gz
-rw-r--r-- root/root 1392 2018-03-27 08:10 ./usr/share/man/man1/bedops.1.gz
-rw-r--r-- root/root 1278 2018-03-27 08:10 ./usr/share/man/man1/closest-features.1.gz
-rw-r--r-- root/root 1222 2018-03-27 08:10 ./usr/share/man/man1/convert2bed.1.gz
-rw-r--r-- root/root 348 2018-03-27 08:10 ./usr/share/man/man1/gff2bed.1.gz
-rw-r--r-- root/root 353 2018-03-27 08:10 ./usr/share/man/man1/gff2starch.1.gz
-rw-r--r-- root/root 347 2018-03-27 08:10 ./usr/share/man/man1/gtf2bed.1.gz
-rw-r--r-- root/root 353 2018-03-27 08:10 ./usr/share/man/man1/gtf2starch.1.gz
-rw-r--r-- root/root 348 2018-03-27 08:10 ./usr/share/man/man1/gvf2bed.1.gz
-rw-r--r-- root/root 354 2018-03-27 08:10 ./usr/share/man/man1/gvf2starch.1.gz
-rw-r--r-- root/root 347 2018-03-27 08:10 ./usr/share/man/man1/psl2bed.1.gz
-rw-r--r-- root/root 353 2018-03-27 08:10 ./usr/share/man/man1/psl2starch.1.gz
-rw-r--r-- root/root 350 2018-03-27 08:10 ./usr/share/man/man1/rmsk2bed.1.gz
-rw-r--r-- root/root 356 2018-03-27 08:10 ./usr/share/man/man1/rmsk2starch.1.gz
-rw-r--r-- root/root 347 2018-03-27 08:10 ./usr/share/man/man1/sam2bed.1.gz
-rw-r--r-- root/root 353 2018-03-27 08:10 ./usr/share/man/man1/sam2starch.1.gz
-rw-r--r-- root/root 741 2018-03-27 08:10 ./usr/share/man/man1/sort-bed.1.gz
-rw-r--r-- root/root 363 2018-03-27 08:10 ./usr/share/man/man1/starch-diff.1.gz
-rw-r--r-- root/root 987 2018-03-27 08:10 ./usr/share/man/man1/starchcat.1.gz
-rw-r--r-- root/root 1109 2018-03-27 08:10 ./usr/share/man/man1/starchstrip.1.gz
-rw-r--r-- root/root 1541 2018-03-27 08:10 ./usr/share/man/man1/unstarch.1.gz
-rw-r--r-- root/root 394 2018-03-27 08:10 ./usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz
-rw-r--r-- root/root 381 2018-03-27 08:10 ./usr/share/man/man1/update-sort-bed-slurm.1.gz
-rw-r--r-- root/root 391 2018-03-27 08:10 ./usr/share/man/man1/update-sort-bed-starch-slurm.1.gz
-rw-r--r-- root/root 348 2018-03-27 08:10 ./usr/share/man/man1/vcf2bed.1.gz
-rw-r--r-- root/root 354 2018-03-27 08:10 ./usr/share/man/man1/vcf2starch.1.gz
-rw-r--r-- root/root 348 2018-03-27 08:10 ./usr/share/man/man1/wig2bed.1.gz
-rw-r--r-- root/root 354 2018-03-27 08:10 ./usr/share/man/man1/wig2starch.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 53848
Build-Time: 710
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 340
Job: bedops_2.4.32+dfsg-2
Machine Architecture: armhf
Package: bedops
Package-Time: 1080
Source-Version: 2.4.32+dfsg-2
Space: 53848
Status: successful
Version: 2.4.32+dfsg-2
--------------------------------------------------------------------------------
Finished at 2018-04-01T04:56:23Z
Build needed 00:18:00, 53848k disk space