bali-phy →
3.5.0.2+dfsg-1 →
armhf → 2020-09-28 06:12:58
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| bali-phy 3.5.0.2+dfsg-1 (armhf) Mon, 28 Sep 2020 05:29:21 +0000 |
+==============================================================================+
Package: bali-phy
Version: 3.5.0.2+dfsg-1
Source Version: 3.5.0.2+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-0333252a-2983-4f6b-af8c-eacd9ab8c092' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 11s (2270 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1106 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.2+dfsg-1 (dsc) [2241 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.2+dfsg-1 (tar) [1100 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.2+dfsg-1 (diff) [4364 B]
Fetched 1106 kB in 1s (1687 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-qZmbqr/bali-phy-3.5.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-qZmbqr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jmEFXA/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jmEFXA/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jmEFXA/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (9143 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (65.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12498 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
Filtered Build-Depends: debhelper-compat (= 13), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-jmEFXA/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ Packages [671 B]
Fetched 2592 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblkid-dev
libboost-chrono-dev libboost-chrono1.71-dev libboost-chrono1.71.0
libboost-dev libboost-filesystem-dev libboost-filesystem1.71-dev
libboost-filesystem1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-random-dev libboost-random1.71-dev libboost-random1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost1.71-dev libbrotli-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3
libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev
libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1
libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2 libmagic-mgc
libmagic1 libmount-dev libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpixman-1-dev libpng-dev libpng16-16 libpthread-stubs0-dev
libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librange-v3-dev
libselinux1-dev libsepol1-dev libsigsegv2 libsm-dev libsm6 libssl1.1
libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libx11-dev
libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxrender-dev libxrender1 m4 man-db meson mime-support
ninja-build nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf
python3 python3-distutils python3-lib2to3 python3-minimal
python3-pkg-resources python3.8 python3.8-minimal ucf uuid-dev x11-common
x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-container1.71-dev libboost-context1.71-dev
libboost-contract1.71-dev libboost-coroutine1.71-dev
libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-graph1.71-dev libboost-graph-parallel1.71-dev
libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev
libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev
libboost-numpy1.71-dev libboost-python1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev
libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev
libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc freetype2-doc
libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils libice-doc libsm-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc
m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex
texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf
librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex
citation-style-language-styles libmail-box-perl python3-doc python3-tk
python3-venv python3-setuptools python3.8-venv python3.8-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
libpng-tools librange-v3-doc libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblkid-dev
libboost-chrono-dev libboost-chrono1.71-dev libboost-chrono1.71.0
libboost-dev libboost-filesystem-dev libboost-filesystem1.71-dev
libboost-filesystem1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-random-dev libboost-random1.71-dev libboost-random1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost1.71-dev libbrotli-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3
libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev
libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1
libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2 libmagic-mgc
libmagic1 libmount-dev libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpixman-1-dev libpng-dev libpng16-16 libpthread-stubs0-dev
libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librange-v3-dev
libselinux1-dev libsepol1-dev libsigsegv2 libsm-dev libsm6 libssl1.1
libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libx11-dev
libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxrender-dev libxrender1 m4 man-db meson mime-support
ninja-build nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf
python3 python3-distutils python3-lib2to3 python3-minimal
python3-pkg-resources python3.8 python3.8-minimal
sbuild-build-depends-bali-phy-dummy ucf uuid-dev x11-common
x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
xtrans-dev zlib1g-dev
0 upgraded, 139 newly installed, 0 to remove and 34 not upgraded.
Need to get 74.0 MB/75.3 MB of archives.
After this operation, 475 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jmEFXA/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.0-2 [1173 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.36-3 [96.5 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.36-3 [212 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.71.0 armhf 1.71.0-6+b1 [239 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.71-dev armhf 1.71.0-6+b1 [247 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono-dev armhf 1.71.0.3+b3 [5028 B]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b3 [4620 B]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71.0 armhf 1.71.0-6+b1 [260 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71.0 armhf 1.71.0-6+b1 [231 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71-dev armhf 1.71.0-6+b1 [232 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71-dev armhf 1.71.0-6+b1 [270 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.71.0.3+b3 [4436 B]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71.0 armhf 1.71.0-6+b1 [341 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71-dev armhf 1.71.0-6+b1 [396 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.71.0.3+b3 [4412 B]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.71.0 armhf 1.71.0-6+b1 [237 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.71-dev armhf 1.71.0-6+b1 [241 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libboost-random-dev armhf 1.71.0.3+b3 [4404 B]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.71.0.3+b3 [4544 B]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libbrotli-dev armhf 1.0.9-2 [272 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.2+dfsg-3 [498 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.2+dfsg-3 [74.5 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig-dev armhf 2.13.1-4.2 [347 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-4.2 [238 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2020.1-1 [3404 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.14-2 [173 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.12-1 [781 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.14-2 [114 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.14-2 [103 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.3-4 [57.9 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.66.0-2 [1167 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.66.0-2 [130 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.5-1 [145 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.66.0-2 [173 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 3.1-1 [308 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 3.1-2 [156 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.36-3 [76.5 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.66.0-2 [1450 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-3 [850 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf librange-v3-dev all 0.11.0-1 [221 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf ninja-build armhf 1.10.1-1 [92.5 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf meson all 0.55.3-1 [416 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf nlohmann-json3-dev all 3.9.0-1 [677 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf pandoc-data all 2.9.1.1-3 [371 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf pandoc armhf 2.9.1.1-3 [18.8 MB]
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2+rpi1 binutils-arm-linux-gnueabihf_2.35-2+rpi1 binutils-common_2.35-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-2+rpi1 libblkid-dev_2.36-3 libblkid1_2.36-3 libboost-chrono-dev_1.71.0.3+b3 libboost-chrono1.71-dev_1.71.0-6+b1 libboost-chrono1.71.0_1.71.0-6+b1 libboost-dev_1.71.0.3+b3 libboost-filesystem-dev_1.71.0.3+b3 libboost-filesystem1.71-dev_1.71.0-6+b1 libboost-filesystem1.71.0_1.71.0-6+b1 libboost-iostreams1.71.0_1.71.0-6+b1 libboost-program-options-dev_1.71.0.3+b3 libboost-program-options1.71-dev_1.71.0-6+b1 libboost-program-options1.71.0_1.71.0-6+b1 libboost-random-dev_1.71.0.3+b3 libboost-random1.71-dev_1.71.0-6+b1 libboost-random1.71.0_1.71.0-6+b1 libboost-system-dev_1.71.0.3+b3 libboost-system1.71-dev_1.71.0-6+b1 libboost-system1.71.0_1.71.0-6+b1 libboost1.71-dev_1.71.0-6+b1 libbrotli-dev_1.0.9-2 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcap2-bin_1:2.43-1 libcc1-0_10.2.0-5+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libeigen3-dev_3.3.7-3 libelf1_0.181-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi-dev_3.3-4 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig-dev_2.13.1-4.2 libfontconfig1_2.13.1-4.2 libfontconfig1-dev_2.13.1-4.2 libfreetype-dev_2.10.2+dfsg-3 libfreetype6_2.10.2+dfsg-3 libfreetype6-dev_2.10.2+dfsg-3 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libglib2.0-bin_2.66.0-2 libglib2.0-data_2.66.0-2 libglib2.0-dev_2.66.0-2 libglib2.0-dev-bin_2.66.0-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libhogweed6_3.6-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.4.0-2 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 liblzo2-2_2.10-2 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount-dev_2.36-3 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.43-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-13 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 librange-v3-dev_0.11.0-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libselinux1-dev_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsepol1-dev_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.2-1+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libx11-dev_2:1.6.12-1 libxapian30_1.4.17-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-render0-dev_1.14-2 libxcb-shm0_1.14-2 libxcb-shm0-dev_1.14-2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-6 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 meson_0.55.3-1 mime-support_3.64 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 ninja-build_1.10.1-1 nlohmann-json3-dev_3.9.0-1 pandoc_2.9.1.1-3 pandoc-data_2.9.1.1-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 python3_3.8.2-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3-pkg-resources_46.1.3-1 python3.8_3.8.6-1 python3.8-minimal_3.8.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3 uuid-dev_2.36-3 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.DL1lmeqx/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 25 14:16:41 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.5.0.2+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg
dpkg-source: info: unpacking bali-phy_3.5.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.5.0.2+dfsg-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-0333252a-2983-4f6b-af8c-eacd9ab8c092
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.5.0.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_autoreconf_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules binary-arch
dh binary-arch --buildsystem=meson
dh_update_autotools_config -a -O--buildsystem=meson
dh_autoreconf -a -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg'
dh_auto_configure -- -Dextra-tools=false --buildtype=release
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf -Dextra-tools=false --buildtype=release
The Meson build system
Version: 0.55.3
Source dir: /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Project version: 3.5.0.2
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C compiler for the host machine: cc (gcc 10.2.0 "cc (Raspbian 10.2.0-5+rpi1) 10.2.0")
C linker for the host machine: cc ld.bfd 2.35
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C++ compiler for the host machine: c++ (gcc 10.2.0 "c++ (Raspbian 10.2.0-5+rpi1) 10.2.0")
C++ linker for the host machine: c++ ld.bfd 2.35
Host machine cpu family: arm
Host machine cpu: armv8l
Has header "sys/resource.h" : YES
Has header "fenv.h" : YES
Checking for function "log2" : YES
Checking for function "feenableexcept" : YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-sign-compare -Wsign-compare: YES
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES
Compiler for C++ supports arguments -Woverloaded-virtual: YES
Compiler for C++ supports arguments -Wstrict-aliasing: YES
Compiler for C++ supports arguments -Wno-unknown-pragmas -Wunknown-pragmas: YES
Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES
Compiler for C++ supports arguments -funroll-loops: YES
Compiler for C++ supports arguments -fno-math-errno: YES
Compiler for C++ supports arguments -fno-signed-zeros: YES
Run-time dependency threads found: YES
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency cairo found: YES 1.16.0
Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.71.0 (/usr)
Run-time dependency eigen3 found: YES 3.3.7
Has header "nlohmann/json.hpp" : YES
Library dl found: YES
Has header "range/v3/view/take.hpp" : YES
Library m found: YES
Program pandoc found: YES
Program /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/tests/run-tests.py found: YES
Build targets in project: 86
bali-phy 3.5.0.2
Architecture
host: linux
Libraries
BOOST: system
Eigen: system
nlohmann::json: system
range v3: system
cairo: system
Directories
prefix: /usr
Configuration
optimization: 3
debug: False
Found ninja-1.10.1 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg'
dh_auto_build -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/292] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_pred.cc.o -MF src/util/libutil.a.p/string_pred.cc.o.d -o src/util/libutil.a.p/string_pred.cc.o -c ../src/util/string/pred.cc
[3/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/log-level.cc.o -MF src/util/libutil.a.p/log-level.cc.o.d -o src/util/libutil.a.p/log-level.cc.o -c ../src/util/log-level.cc
[4/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc
[5/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_sanitize.cc.o -MF src/util/libutil.a.p/string_sanitize.cc.o.d -o src/util/libutil.a.p/string_sanitize.cc.o -c ../src/util/string/sanitize.cc
[6/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc
[7/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc
[8/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc
[9/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc
[10/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc
../src/util/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/util/rng.cc:42:8: warning: left shift count >= width of type [-Wshift-count-overflow]
42 | s <<= bits_per_read;
| ~~^~~~~~~~~~~~~~~~~
[11/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc
[12/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc
[13/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc
[14/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/myexception.cc.o -MF src/util/libutil.a.p/myexception.cc.o.d -o src/util/libutil.a.p/myexception.cc.o -c ../src/util/myexception.cc
[15/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc
[16/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/time.cc.o -MF src/util/libutil.a.p/time.cc.o.d -o src/util/libutil.a.p/time.cc.o -c ../src/util/time.cc
[17/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/text.cc.o -MF src/util/libutil.a.p/text.cc.o.d -o src/util/libutil.a.p/text.cc.o -c ../src/util/text.cc
[18/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc
[19/292] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/ptree.cc.o -MF src/util/libutil.a.p/ptree.cc.o.d -o src/util/libutil.a.p/ptree.cc.o -c ../src/util/ptree.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[20/292] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o
[21/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc
[22/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc
[23/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc
[24/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc
[25/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_alphabet.cc.o -MF src/libcommon.a.p/sequence_alphabet.cc.o.d -o src/libcommon.a.p/sequence_alphabet.cc.o -c ../src/sequence/alphabet.cc
[26/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree.cc.o -MF src/libcommon.a.p/tree_tree.cc.o.d -o src/libcommon.a.p/tree_tree.cc.o -c ../src/tree/tree.cc
[27/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence-format.cc.o -MF src/libcommon.a.p/sequence_sequence-format.cc.o.d -o src/libcommon.a.p/sequence_sequence-format.cc.o -c ../src/sequence/sequence-format.cc
[28/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_read-trees.cc.o -MF src/libcommon.a.p/tools_read-trees.cc.o.d -o src/libcommon.a.p/tools_read-trees.cc.o -c ../src/tools/read-trees.cc
[29/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence.cc.o -MF src/libcommon.a.p/sequence_sequence.cc.o.d -o src/libcommon.a.p/sequence_sequence.cc.o -c ../src/sequence/sequence.cc
[30/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_load.cc.o -MF src/libcommon.a.p/alignment_load.cc.o.d -o src/libcommon.a.p/alignment_load.cc.o -c ../src/alignment/load.cc
[31/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-random.cc.o -MF src/libcommon.a.p/alignment_alignment-random.cc.o.d -o src/libcommon.a.p/alignment_alignment-random.cc.o -c ../src/alignment/alignment-random.cc
[32/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-util.cc.o -MF src/libcommon.a.p/alignment_alignment-util.cc.o.d -o src/libcommon.a.p/alignment_alignment-util.cc.o -c ../src/alignment/alignment-util.cc
[33/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment.cc.o -MF src/libcommon.a.p/alignment_alignment.cc.o.d -o src/libcommon.a.p/alignment_alignment.cc.o -c ../src/alignment/alignment.cc
[34/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_index-matrix.cc.o -MF src/libcommon.a.p/alignment_index-matrix.cc.o.d -o src/libcommon.a.p/alignment_index-matrix.cc.o -c ../src/alignment/index-matrix.cc
[35/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_link.cc.o -MF src/libcommon.a.p/tree-align_link.cc.o.d -o src/libcommon.a.p/tree-align_link.cc.o -c ../src/tree-align/link.cc
[36/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_partition.cc.o -MF src/libcommon.a.p/tools_partition.cc.o.d -o src/libcommon.a.p/tools_partition.cc.o -c ../src/tools/partition.cc
[37/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_statistics.cc.o -MF src/libcommon.a.p/tools_statistics.cc.o.d -o src/libcommon.a.p/tools_statistics.cc.o -c ../src/tools/statistics.cc
../src/tools/statistics.cc: In function ‘std::pair<double, double> statistics::central_confidence_interval(const std::valarray<double>&, double)’:
../src/tools/statistics.cc:132:90: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
132 | pair<double,double> central_confidence_interval(const valarray<double>& values,double P)
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
[38/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/models_path.cc.o -MF src/libcommon.a.p/models_path.cc.o.d -o src/libcommon.a.p/models_path.cc.o -c ../src/models/path.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/path.H:5,
from ../src/models/path.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[39/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_tree-dist.cc.o -MF src/libcommon.a.p/tools_tree-dist.cc.o.d -o src/libcommon.a.p/tools_tree-dist.cc.o -c ../src/tools/tree-dist.cc
[40/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_parsimony.cc.o -MF src/libcommon.a.p/tools_parsimony.cc.o.d -o src/libcommon.a.p/tools_parsimony.cc.o -c ../src/tools/parsimony.cc
[41/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc
[42/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_optimize.cc.o -MF src/libcommon.a.p/tools_optimize.cc.o.d -o src/libcommon.a.p/tools_optimize.cc.o -c ../src/tools/optimize.cc
[43/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc
[44/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc
[45/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-report.cc.o -MF src/libcommon.a.p/tools_distance-report.cc.o.d -o src/libcommon.a.p/tools_distance-report.cc.o -c ../src/tools/distance-report.cc
../src/tools/distance-report.cc: In function ‘void report_distances(const std::valarray<double>&, const string&, boost::program_options::variables_map&)’:
../src/tools/distance-report.cc:35:75: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
35 | pair<double,double> interval = central_confidence_interval(distances,P);
| ^
[46/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_inverse.cc.o -MF src/libcommon.a.p/tools_inverse.cc.o.d -o src/libcommon.a.p/tools_inverse.cc.o -c ../src/tools/inverse.cc
[47/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::string Box<T>::print() const [with T = bali_phy::matrix<double>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[48/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc
[49/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_stats-table.cc.o -MF src/libcommon.a.p/tools_stats-table.cc.o.d -o src/libcommon.a.p/tools_stats-table.cc.o -c ../src/tools/stats-table.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > parameter_values_children(const json&)’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:7,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:49,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:7,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:49,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function ‘void unnest_json(const string&, const json&, nlohmann::json&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[50/292] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-methods.cc.o -MF src/libcommon.a.p/tools_distance-methods.cc.o.d -o src/libcommon.a.p/tools_distance-methods.cc.o -c ../src/tools/distance-methods.cc
[51/292] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o
[52/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/closure.cc.o -MF src/computation/libcomputation.a.p/closure.cc.o.d -o src/computation/libcomputation.a.p/closure.cc.o -c ../src/computation/closure.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/closure.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[53/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/preprocess.cc.o -MF src/computation/libcomputation.a.p/preprocess.cc.o.d -o src/computation/libcomputation.a.p/preprocess.cc.o -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[54/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<expression_ref> desugar_state::parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[55/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar-case.cc.o -MF src/computation/libcomputation.a.p/parser_desugar-case.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar-case.cc.o -c ../src/computation/parser/desugar-case.cc
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In lambda function:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
../src/computation/parser/desugar-case.cc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’:
../src/computation/parser/desugar-case.cc:325:26: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
325 | rhs.add_binding({{y, x}});
| ^
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/computation/parser/desugar-case.cc:345:26: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
345 | rhs.add_binding({{y, x}});
| ^
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
1665 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1666 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
1665 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1666 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector<equation_info_t>&, const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[56/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc
../src/computation/program.cc: In member function ‘void Program::check_dependencies()’:
../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable]
155 | int index = find_module(name);
| ^~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[57/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/operations.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[58/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/closure.H:4,
from ../src/computation/context.H:4,
from ../src/computation/context.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void context_ref::run_transition_kernels()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[59/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::string&, std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/computation/module.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, symbol_info>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/c++/10/regex:52,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = symbol_info; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘void Module::add_symbol(const symbol_info&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::load_constructors()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[60/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/param.cc.o -MF src/computation/libcomputation.a.p/param.cc.o.d -o src/computation/libcomputation.a.p/param.cc.o -c ../src/computation/param.cc
[61/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_operator.cc.o -MF src/computation/libcomputation.a.p/expression_operator.cc.o.d -o src/computation/libcomputation.a.p/expression_operator.cc.o -c ../src/computation/expression/operator.cc
[62/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression.cc.o -MF src/computation/libcomputation.a.p/expression_expression.cc.o.d -o src/computation/libcomputation.a.p/expression_expression.cc.o -c ../src/computation/expression/expression.cc
[63/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc
[64/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc
[65/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_lexer.cc.o -MF src/computation/libcomputation.a.p/parser_lexer.cc.o.d -o src/computation/libcomputation.a.p/parser_lexer.cc.o -c ../src/computation/parser/lexer.cc
[66/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/deque:69,
from ../src/computation/parser/rename.cc:5:
/usr/include/c++/10/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/deque.tcc:768:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
768 | deque<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/deque.tcc:768:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref rename_infix_top(const Module&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘bound_var_info renamer_state::rename_pattern(expression_ref&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘bound_var_info renamer_state::rename_rec_stmt(expression_ref&, const bound_var_info&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[67/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_exponential.cc.o -MF src/libbaliphy.a.p/math_exponential.cc.o.d -o src/libbaliphy.a.p/math_exponential.cc.o -c ../src/math/exponential.cc
[68/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_constructor.cc.o -MF src/computation/libcomputation.a.p/expression_constructor.cc.o.d -o src/computation/libcomputation.a.p/expression_constructor.cc.o -c ../src/computation/expression/constructor.cc
[69/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_eigenvalue.cc.o -MF src/libbaliphy.a.p/math_eigenvalue.cc.o.d -o src/libbaliphy.a.p/math_eigenvalue.cc.o -c ../src/math/eigenvalue.cc
[70/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_AST_node.cc.o -MF src/computation/libcomputation.a.p/expression_AST_node.cc.o.d -o src/computation/libcomputation.a.p/expression_AST_node.cc.o -c ../src/computation/expression/AST_node.cc
[71/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_parser.cc.o -MF src/computation/libcomputation.a.p/parser_parser.cc.o.d -o src/computation/libcomputation.a.p/parser_parser.cc.o -c ../src/computation/parser/parser.cc
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<expression_ref> make_String_vec(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator<yy::parser::stack_symbol_type>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_module(const string&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref type_apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, std::optional<int>&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
parser.y: In member function ‘virtual int yy::parser::parse()’:
parser.y:890:163: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:979:256: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1135:126: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1136:173: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1137:171: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1138:218: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
[72/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_apply.cc.o -MF src/computation/libcomputation.a.p/expression_apply.cc.o.d -o src/computation/libcomputation.a.p/expression_apply.cc.o -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[73/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_lambda.cc.o -MF src/computation/libcomputation.a.p/expression_lambda.cc.o.d -o src/computation/libcomputation.a.p/expression_lambda.cc.o -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[74/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression_ref.cc.o -MF src/computation/libcomputation.a.p/expression_expression_ref.cc.o.d -o src/computation/libcomputation.a.p/expression_expression_ref.cc.o -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:299:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
299 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
| ^~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[75/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_substitute.cc.o -MF src/computation/libcomputation.a.p/expression_substitute.cc.o.d -o src/computation/libcomputation.a.p/expression_substitute.cc.o -c ../src/computation/expression/substitute.cc
[76/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_indexify.cc.o -MF src/computation/libcomputation.a.p/expression_indexify.cc.o.d -o src/computation/libcomputation.a.p/expression_indexify.cc.o -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<var>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[77/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_case.cc.o -MF src/computation/libcomputation.a.p/expression_case.cc.o.d -o src/computation/libcomputation.a.p/expression_case.cc.o -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[78/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_let.cc.o -MF src/computation/libcomputation.a.p/expression_let.cc.o.d -o src/computation/libcomputation.a.p/expression_let.cc.o -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[79/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_tuple.cc.o -MF src/computation/libcomputation.a.p/expression_tuple.cc.o.d -o src/computation/libcomputation.a.p/expression_tuple.cc.o -c ../src/computation/expression/tuple.cc
[80/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_trim.cc.o -MF src/computation/libcomputation.a.p/expression_trim.cc.o.d -o src/computation/libcomputation.a.p/expression_trim.cc.o -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[81/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_list.cc.o -MF src/computation/libcomputation.a.p/expression_list.cc.o.d -o src/computation/libcomputation.a.p/expression_list.cc.o -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::optional<EVector> list_to_evector(const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[82/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_random_variable.cc.o -MF src/computation/libcomputation.a.p/expression_random_variable.cc.o.d -o src/computation/libcomputation.a.p/expression_random_variable.cc.o -c ../src/computation/expression/random_variable.cc
[83/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_var.cc.o -MF src/computation/libcomputation.a.p/expression_var.cc.o.d -o src/computation/libcomputation.a.p/expression_var.cc.o -c ../src/computation/expression/var.cc
[84/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_reg_var.cc.o -MF src/computation/libcomputation.a.p/expression_reg_var.cc.o.d -o src/computation/libcomputation.a.p/expression_reg_var.cc.o -c ../src/computation/expression/reg_var.cc
[85/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_args.cc.o -MF src/computation/libcomputation.a.p/machine_args.cc.o.d -o src/computation/libcomputation.a.p/machine_args.cc.o -c ../src/computation/machine/args.cc
[86/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_modifiable.cc.o -MF src/computation/libcomputation.a.p/expression_modifiable.cc.o.d -o src/computation/libcomputation.a.p/expression_modifiable.cc.o -c ../src/computation/expression/modifiable.cc
[87/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_bool.cc.o -MF src/computation/libcomputation.a.p/expression_bool.cc.o.d -o src/computation/libcomputation.a.p/expression_bool.cc.o -c ../src/computation/expression/bool.cc
[88/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_maybe.cc.o -MF src/computation/libcomputation.a.p/expression_maybe.cc.o.d -o src/computation/libcomputation.a.p/expression_maybe.cc.o -c ../src/computation/expression/maybe.cc
[89/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -MF src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o.d -o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -c ../src/computation/expression/resolved_symbol.cc
[90/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_do_block.cc.o -MF src/computation/libcomputation.a.p/expression_do_block.cc.o.d -o src/computation/libcomputation.a.p/expression_do_block.cc.o -c ../src/computation/expression/do_block.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘do_block& do_block::empty_stmt()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘expression_ref do_block::bind_and_log_model(const string&, const expression_ref&, std::vector<expression_ref>&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘do_block& do_block::let(const Binds&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘do_block& do_block::rec(const do_block&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[91/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_tokens.cc.o -MF src/computation/libcomputation.a.p/machine_tokens.cc.o.d -o src/computation/libcomputation.a.p/machine_tokens.cc.o -c ../src/computation/machine/tokens.cc
[92/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[93/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/10/set:60,
from ../src/computation/program.H:4,
from ../src/computation/machine/graph_register.H:11,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/computation/program.H:7,
from ../src/computation/machine/graph_register.H:11,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/10/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[94/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_sums.cc.o -MF src/computation/libcomputation.a.p/machine_sums.cc.o.d -o src/computation/libcomputation.a.p/machine_sums.cc.o -c ../src/computation/machine/sums.cc
[95/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc
[96/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc
[97/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_effects.cc.o -MF src/computation/libcomputation.a.p/machine_effects.cc.o.d -o src/computation/libcomputation.a.p/machine_effects.cc.o -c ../src/computation/machine/effects.cc
[98/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_reroot.cc.o -MF src/computation/libcomputation.a.p/machine_reroot.cc.o.d -o src/computation/libcomputation.a.p/machine_reroot.cc.o -c ../src/computation/machine/reroot.cc
[99/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_free-vars.cc.o -MF src/computation/libcomputation.a.p/optimization_free-vars.cc.o.d -o src/computation/libcomputation.a.p/optimization_free-vars.cc.o -c ../src/computation/optimization/free-vars.cc
[100/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_inliner.cc.o -MF src/computation/libcomputation.a.p/optimization_inliner.cc.o.d -o src/computation/libcomputation.a.p/optimization_inliner.cc.o -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[101/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_float-out.cc.o -MF src/computation/libcomputation.a.p/optimization_float-out.cc.o.d -o src/computation/libcomputation.a.p/optimization_float-out.cc.o -c ../src/computation/optimization/float-out.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/optimization/float-out.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void float_binds_t::append_top(CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void float_out_from_module(std::vector<std::vector<std::pair<var, expression_ref> > >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[102/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_occurrence.cc.o -MF src/computation/libcomputation.a.p/optimization_occurrence.cc.o.d -o src/computation/libcomputation.a.p/optimization_occurrence.cc.o -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<var, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<var>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<var> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[103/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-engine.cc.o -MF src/libbaliphy.a.p/dp_dp-engine.cc.o.d -o src/libbaliphy.a.p/dp_dp-engine.cc.o -c ../src/dp/dp-engine.cc
[104/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_set-levels.cc.o -MF src/computation/libcomputation.a.p/optimization_set-levels.cc.o.d -o src/computation/libcomputation.a.p/optimization_set-levels.cc.o -c ../src/computation/optimization/set-levels.cc
[105/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_dp_hmm.cc.o -c ../src/dp/dp_hmm.cc
[106/292] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_simplifier.cc.o -MF src/computation/libcomputation.a.p/optimization_simplifier.cc.o.d -o src/computation/libcomputation.a.p/optimization_simplifier.cc.o -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[107/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_hmm.cc.o -c ../src/dp/hmm.cc
[108/292] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o
[109/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-matrix.cc.o -MF src/libbaliphy.a.p/dp_dp-matrix.cc.o.d -o src/libbaliphy.a.p/dp_dp-matrix.cc.o -c ../src/dp/dp-matrix.cc
[110/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-array.cc.o -MF src/libbaliphy.a.p/dp_dp-array.cc.o.d -o src/libbaliphy.a.p/dp_dp-array.cc.o -c ../src/dp/dp-array.cc
[111/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-cube.cc.o -MF src/libbaliphy.a.p/dp_dp-cube.cc.o.d -o src/libbaliphy.a.p/dp_dp-cube.cc.o -c ../src/dp/dp-cube.cc
[112/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-node.cc.o -MF src/libbaliphy.a.p/mcmc_sample-node.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-node.cc.o -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[113/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_3way.cc.o -MF src/libbaliphy.a.p/dp_3way.cc.o.d -o src/libbaliphy.a.p/dp_3way.cc.o -c ../src/dp/3way.cc
[114/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_2way.cc.o -MF src/libbaliphy.a.p/dp_2way.cc.o.d -o src/libbaliphy.a.p/dp_2way.cc.o -c ../src/dp/2way.cc
[115/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -c ../src/mcmc/sample-topology-NNI.cc
[116/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_5way.cc.o -MF src/libbaliphy.a.p/dp_5way.cc.o.d -o src/libbaliphy.a.p/dp_5way.cc.o -c ../src/dp/5way.cc
[117/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_alignment-sums.cc.o -MF src/libbaliphy.a.p/dp_alignment-sums.cc.o.d -o src/libbaliphy.a.p/dp_alignment-sums.cc.o -c ../src/dp/alignment-sums.cc
[118/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_mcmc.cc.o -MF src/libbaliphy.a.p/mcmc_mcmc.cc.o.d -o src/libbaliphy.a.p/mcmc_mcmc.cc.o -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[119/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_AIS.cc.o -MF src/libbaliphy.a.p/mcmc_AIS.cc.o.d -o src/libbaliphy.a.p/mcmc_AIS.cc.o -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[120/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_proposals.cc.o -MF src/libbaliphy.a.p/mcmc_proposals.cc.o.d -o src/libbaliphy.a.p/mcmc_proposals.cc.o -c ../src/mcmc/proposals.cc
[121/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -MF src/libbaliphy.a.p/mcmc_slice-sampling.cc.o.d -o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -c ../src/mcmc/slice-sampling.cc
../src/mcmc/slice-sampling.cc: In function ‘std::pair<double, double> find_slice_boundaries_stepping_out(double, slice_function&, double, double, int)’:
../src/mcmc/slice-sampling.cc:373:91: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
373 | find_slice_boundaries_stepping_out(double x0,slice_function& g,double logy, double w,int m)
| ^
[122/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_moves.cc.o -MF src/libbaliphy.a.p/mcmc_moves.cc.o.d -o src/libbaliphy.a.p/mcmc_moves.cc.o -c ../src/mcmc/moves.cc
[123/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -MF src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -c ../src/mcmc/sample-branch-lengths.cc
[124/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -MF src/libbaliphy.a.p/mcmc_sample-alignment.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -c ../src/mcmc/sample-alignment.cc
[125/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -MF src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-two-nodes.cc:29:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[126/292] c++ -Isrc/tree-tool.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-tool.p/tools_tree-tool.cc.o -MF src/tree-tool.p/tools_tree-tool.cc.o.d -o src/tree-tool.p/tools_tree-tool.cc.o -c ../src/tools/tree-tool.cc
[127/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_logger.cc.o -MF src/libbaliphy.a.p/mcmc_logger.cc.o.d -o src/libbaliphy.a.p/mcmc_logger.cc.o -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[128/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/dp/2way.H:24,
from ../src/mcmc/sample-topology-SPR.cc:26:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘spr_info::spr_info(const TreeInterface&, const tree_edge&, const spr_range&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/dp/2way.H:24,
from ../src/mcmc/sample-topology-SPR.cc:26:
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool SPR_accept_or_reject_proposed_tree(Parameters&, std::vector<Parameters>&, const std::vector<log_double_t>&, const std::vector<log_double_t>&, const spr_info&, int, const spr_attachment_points&, const std::map<tree_edge, std::vector<int> >&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool sample_SPR_search_one(Parameters&, MCMC::MoveStats&, const tree_edge&, const spr_range&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[129/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-cube.cc.o -MF src/libbaliphy.a.p/mcmc_sample-cube.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-cube.cc.o -c ../src/mcmc/sample-cube.cc
[130/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-tri.cc.o -MF src/libbaliphy.a.p/mcmc_sample-tri.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-tri.cc.o -c ../src/mcmc/sample-tri.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/mcmc/sample-tri.cc:20:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void sample_A3_multi_calculation::run_dp()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[131/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_parsimony.cc.o -MF src/libbaliphy.a.p/substitution_parsimony.cc.o.d -o src/libbaliphy.a.p/substitution_parsimony.cc.o -c ../src/substitution/parsimony.cc
[132/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_pow2.cc.o -MF src/libbaliphy.a.p/math_pow2.cc.o.d -o src/libbaliphy.a.p/math_pow2.cc.o -c ../src/math/pow2.cc
[133/292] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md
[134/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_setup.cc.o -MF src/libbaliphy.a.p/mcmc_setup.cc.o.d -o src/libbaliphy.a.p/mcmc_setup.cc.o -c ../src/mcmc/setup.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/path.H:5,
from ../src/mcmc/setup.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void do_sampling(const boost::program_options::variables_map&, owned_ptr<Model>&, long int, std::ostream&, const std::vector<std::function<void(const Model&, long int)> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[135/292] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md
[136/292] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md
[137/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_substitution.cc.o -MF src/libbaliphy.a.p/substitution_substitution.cc.o.d -o src/libbaliphy.a.p/substitution_substitution.cc.o -c ../src/substitution/substitution.cc
[138/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc
[139/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_TreeInterface.cc.o -MF src/libbaliphy.a.p/models_TreeInterface.cc.o.d -o src/libbaliphy.a.p/models_TreeInterface.cc.o -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[140/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parse.cc.o -MF src/libbaliphy.a.p/models_parse.cc.o.d -o src/libbaliphy.a.p/models_parse.cc.o -c ../src/models/parse.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[141/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_site-compression.cc.o -MF src/libbaliphy.a.p/models_site-compression.cc.o.d -o src/libbaliphy.a.p/models_site-compression.cc.o -c ../src/models/site-compression.cc
[142/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_translate.cc.o -MF src/libbaliphy.a.p/models_translate.cc.o.d -o src/libbaliphy.a.p/models_translate.cc.o -c ../src/models/translate.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set<std::__cxx11::basic_string<char> >, const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[143/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_rules.cc.o -MF src/libbaliphy.a.p/models_rules.cc.o.d -o src/libbaliphy.a.p/models_rules.cc.o -c ../src/models/rules.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/models/rules.cc:2:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/models/rules.H:5,
from ../src/models/rules.cc:3:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::input_stream_adapter]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[144/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parameters.cc.o -MF src/libbaliphy.a.p/models_parameters.cc.o.d -o src/libbaliphy.a.p/models_parameters.cc.o -c ../src/models/parameters.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const TreeInterface&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const Tree&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<param, param, param>}; _Tp = std::tuple<param, param, param>; _Alloc = std::allocator<std::tuple<param, param, param> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::tuple<param, param, param> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<param>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘tree_constants::tree_constants(context*, const std::vector<std::__cxx11::basic_string<char> >&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<param> get_params_from_array(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<param> get_params_from_list(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref tree_expression(const SequenceTree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Parameters*, int&, const alphabet&, const int&}; _Tp = data_partition_constants; _Alloc = std::allocator<data_partition_constants>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<data_partition_constants>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘Parameters::Parameters(const Program&, const key_map_t&, const std::vector<alignment>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const SequenceTree&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<int>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::string generate_atmodel_program(int, const std::vector<expression_ref>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const model_t&, const std::vector<int>&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[145/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_setup.cc.o -MF src/libbaliphy.a.p/models_setup.cc.o.d -o src/libbaliphy.a.p/models_setup.cc.o -c ../src/models/setup.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::tuple<expression_ref, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, bool> get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[146/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc
[147/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc
[148/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc
[149/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc
[150/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc
In file included from ../src/probability/probability.cc:22:
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of ‘boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = long double; boost::math::detail::upper_incomplete_gamma_fract<T>::result_type = std::pair<long double, long double>]’:
/usr/include/boost/math/tools/fraction.hpp:216:20: required from ‘typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename boost::math::tools::detail::fraction_traits<Gen>::result_type = long double; uintmax_t = long long unsigned int]’
/usr/include/boost/math/tools/fraction.hpp:251:31: required from ‘typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename boost::math::tools::detail::fraction_traits<Gen>::result_type = long double]’
/usr/include/boost/math/special_functions/gamma.hpp:320:68: required from ‘T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]’
/usr/include/boost/math/special_functions/gamma.hpp:1109:44: required from ‘T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
/usr/include/boost/math/special_functions/gamma.hpp:2041:35: required from ‘typename boost::math::tools::promote_args<RT1, RT2>::type boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>; typename boost::math::tools::promote_args<RT1, RT2>::type = double]’
/usr/include/boost/math/special_functions/gamma.hpp:2049:18: required from ‘typename boost::math::tools::promote_args<RT1, RT2>::type boost::math::gamma_p(RT1, RT2) [with RT1 = double; RT2 = double; typename boost::math::tools::promote_args<RT1, RT2>::type = double]’
../src/probability/probability.cc:348:35: required from here
/usr/include/boost/math/special_functions/gamma.hpp:305:16: note: parameter passing for argument of type ‘std::pair<long double, long double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
305 | result_type operator()()
| ^~~~~~~~
[151/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/imodel_imodel.cc.o -MF src/libbaliphy.a.p/imodel_imodel.cc.o.d -o src/libbaliphy.a.p/imodel_imodel.cc.o -c ../src/imodel/imodel.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/model.H:34,
from ../src/imodel/imodel.H:29,
from ../src/imodel/imodel.cc:27:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[152/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tools_parsimony2.cc.o -MF src/libbaliphy.a.p/tools_parsimony2.cc.o.d -o src/libbaliphy.a.p/tools_parsimony2.cc.o -c ../src/tools/parsimony2.cc
[153/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_model.cc.o -MF src/libbaliphy.a.p/models_model.cc.o.d -o src/libbaliphy.a.p/models_model.cc.o -c ../src/models/model.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/models/model.cc:20:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/models/model.cc:21:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[154/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc
[155/292] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc
[156/292] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/nlohmann/json.hpp:37,
from ../src/util/include/util/json.hh:3,
from ../src/version.H:24,
from ../src/version.cc:20:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[157/292] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a src/libbaliphy.a.p/dp_dp_hmm.cc.o src/libbaliphy.a.p/dp_hmm.cc.o src/libbaliphy.a.p/dp_dp-engine.cc.o src/libbaliphy.a.p/dp_dp-array.cc.o src/libbaliphy.a.p/dp_dp-matrix.cc.o src/libbaliphy.a.p/dp_dp-cube.cc.o src/libbaliphy.a.p/dp_2way.cc.o src/libbaliphy.a.p/dp_3way.cc.o src/libbaliphy.a.p/dp_5way.cc.o src/libbaliphy.a.p/dp_alignment-sums.cc.o src/libbaliphy.a.p/mcmc_mcmc.cc.o src/libbaliphy.a.p/mcmc_proposals.cc.o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o src/libbaliphy.a.p/mcmc_AIS.cc.o src/libbaliphy.a.p/mcmc_logger.cc.o src/libbaliphy.a.p/mcmc_moves.cc.o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o src/libbaliphy.a.p/mcmc_sample-node.cc.o src/libbaliphy.a.p/mcmc_sample-cube.cc.o src/libbaliphy.a.p/mcmc_sample-tri.cc.o src/libbaliphy.a.p/mcmc_setup.cc.o src/libbaliphy.a.p/substitution_substitution.cc.o src/libbaliphy.a.p/substitution_parsimony.cc.o src/libbaliphy.a.p/math_exponential.cc.o src/libbaliphy.a.p/math_eigenvalue.cc.o src/libbaliphy.a.p/math_pow2.cc.o src/libbaliphy.a.p/models_parameters.cc.o src/libbaliphy.a.p/models_site-compression.cc.o src/libbaliphy.a.p/models_TreeInterface.cc.o src/libbaliphy.a.p/models_setup.cc.o src/libbaliphy.a.p/models_rules.cc.o src/libbaliphy.a.p/models_parse.cc.o src/libbaliphy.a.p/models_translate.cc.o src/libbaliphy.a.p/models_unification.cc.o src/libbaliphy.a.p/models_model.cc.o src/libbaliphy.a.p/tree-align_link2.cc.o src/libbaliphy.a.p/probability_choose.cc.o src/libbaliphy.a.p/probability_probability.cc.o src/libbaliphy.a.p/imodel_imodel.cc.o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o src/libbaliphy.a.p/alignment_alignment-util2.cc.o src/libbaliphy.a.p/tree-align_n_indels2.cc.o src/libbaliphy.a.p/tools_parsimony2.cc.o src/libbaliphy.a.p/version.cc.o
[158/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/bali-phy.cc.o -MF src/bali-phy/bali-phy.p/bali-phy.cc.o.d -o src/bali-phy/bali-phy.p/bali-phy.cc.o -c ../src/bali-phy/bali-phy.cc
../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’:
../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
122 | system(cmd.str().c_str());
| ~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from ../src/util/include/util/time.H:41,
from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[159/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/link-partitions.cc.o -MF src/bali-phy/bali-phy.p/link-partitions.cc.o.d -o src/bali-phy/bali-phy.p/link-partitions.cc.o -c ../src/bali-phy/link-partitions.cc
[160/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/filesystem/path_traits.hpp:22,
from /usr/include/boost/filesystem/path.hpp:26,
from /usr/include/boost/filesystem/operations.hpp:25,
from ../src/bali-phy/files.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[161/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc
[162/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/bali-phy/A-T-model.H:8,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/vector.tcc: In function ‘owned_ptr<Model> create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr<module_loader>&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int, const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[163/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc
[164/292] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Data.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[165/292] c++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[166/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc
[167/292] c++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[168/292] c++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o src/builtins/Prelude.so.p/Prelude.cc.o -c ../src/builtins/Prelude.cc
[169/292] c++ -o src/builtins/Prelude.so src/builtins/Prelude.so.p/Prelude.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[170/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc
In file included from /usr/include/c++/10/set:60,
from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/loggers.H:4,
from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[171/292] c++ -Isrc/builtins/Alphabet.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alphabet.so.p/Alphabet.cc.o -MF src/builtins/Alphabet.so.p/Alphabet.cc.o.d -o src/builtins/Alphabet.so.p/Alphabet.cc.o -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[172/292] c++ -o src/builtins/Alphabet.so src/builtins/Alphabet.so.p/Alphabet.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[173/292] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc
[174/292] c++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[175/292] c++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc
[176/292] c++ -o src/builtins/Pair.so src/builtins/Pair.so.p/Pair.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[177/292] c++ -Isrc/builtins/Modifiables.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Modifiables.so.p/Modifiables.cc.o -MF src/builtins/Modifiables.so.p/Modifiables.cc.o.d -o src/builtins/Modifiables.so.p/Modifiables.cc.o -c ../src/builtins/Modifiables.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Modifiables.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref maybe_modifiable_structure(reg_heap&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[178/292] c++ -o src/builtins/Modifiables.so src/builtins/Modifiables.so.p/Modifiables.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[179/292] c++ -Isrc/builtins/Distribution.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Distribution.so.p/Distribution.cc.o -MF src/builtins/Distribution.so.p/Distribution.cc.o.d -o src/builtins/Distribution.so.p/Distribution.cc.o -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[180/292] c++ -o src/builtins/Distribution.so src/builtins/Distribution.so.p/Distribution.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[181/292] c++ -Isrc/builtins/Range.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Range.so.p/Range.cc.o -MF src/builtins/Range.so.p/Range.cc.o.d -o src/builtins/Range.so.p/Range.cc.o -c ../src/builtins/Range.cc
[182/292] c++ -o src/builtins/Range.so src/builtins/Range.so.p/Range.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[183/292] c++ -Isrc/builtins/PopGen.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/PopGen.so.p/PopGen.cc.o -MF src/builtins/PopGen.so.p/PopGen.cc.o.d -o src/builtins/PopGen.so.p/PopGen.cc.o -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_phase2_file(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[184/292] c++ -o src/builtins/PopGen.so src/builtins/PopGen.so.p/PopGen.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[185/292] c++ -Isrc/builtins/Alignment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alignment.so.p/Alignment.cc.o -MF src/builtins/Alignment.so.p/Alignment.cc.o.d -o src/builtins/Alignment.so.p/Alignment.cc.o -c ../src/builtins/Alignment.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alignment.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_leaf_sequence_counts(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_sequence_names(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_sequences_from_alignment(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_select_range(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[186/292] c++ -o src/builtins/Alignment.so src/builtins/Alignment.so.p/Alignment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[187/292] c++ -Isrc/builtins/Vector.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Vector.so.p/Vector.cc.o -MF src/builtins/Vector.so.p/Vector.cc.o.d -o src/builtins/Vector.so.p/Vector.cc.o -c ../src/builtins/Vector.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_list_to_vector(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[188/292] c++ -o src/builtins/Vector.so src/builtins/Vector.so.p/Vector.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[189/292] c++ -Isrc/builtins/Environment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Environment.so.p/Environment.cc.o -MF src/builtins/Environment.so.p/Environment.cc.o.d -o src/builtins/Environment.so.p/Environment.cc.o -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Environment.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[190/292] c++ -Isrc/builtins/MCMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/MCMC.so.p/MCMC.cc.o -MF src/builtins/MCMC.so.p/MCMC.cc.o.d -o src/builtins/MCMC.so.p/MCMC.cc.o -c ../src/builtins/MCMC.cc
[191/292] c++ -Isrc/builtins/SModel.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SModel.so.p/SModel.cc.o -MF src/builtins/SModel.so.p/SModel.cc.o.d -o src/builtins/SModel.so.p/SModel.cc.o -c ../src/builtins/SModel.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_modulated_markov_smap(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[192/292] c++ -o src/builtins/Environment.so src/builtins/Environment.so.p/Environment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[193/292] c++ -o src/builtins/MCMC.so src/builtins/MCMC.so.p/MCMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[194/292] c++ -o src/builtins/SModel.so src/builtins/SModel.so.p/SModel.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[195/292] c++ -Isrc/builtins/Real.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Real.so.p/Real.cc.o -MF src/builtins/Real.so.p/Real.cc.o.d -o src/builtins/Real.so.p/Real.cc.o -c ../src/builtins/Real.cc
[196/292] c++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[197/292] c++ -Isrc/builtins/Bits.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Bits.so.p/Bits.cc.o -MF src/builtins/Bits.so.p/Bits.cc.o.d -o src/builtins/Bits.so.p/Bits.cc.o -c ../src/builtins/Bits.cc
[198/292] c++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[199/292] c++ -Isrc/builtins/Text.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Text.so.p/Text.cc.o -MF src/builtins/Text.so.p/Text.cc.o.d -o src/builtins/Text.so.p/Text.cc.o -c ../src/builtins/Text.cc
[200/292] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[201/292] c++ -Isrc/builtins/Foreign.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Foreign.so.p/Foreign.cc.o -MF src/builtins/Foreign.so.p/Foreign.cc.o.d -o src/builtins/Foreign.so.p/Foreign.cc.o -c ../src/builtins/Foreign.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Foreign.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘nlohmann::json c_json(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[202/292] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[203/292] c++ -Isrc/builtins/SMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/SMC.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > compress_states(const std::vector<int>&, const std::vector<double>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > smc_trace(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_smc_trace(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘log_double_t smc(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_smc_density(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[204/292] c++ -o src/builtins/SMC.so src/builtins/SMC.so.p/SMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[205/292] c++ -Isrc/model_P.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/model_P.p/tools_model_P.cc.o -MF src/model_P.p/tools_model_P.cc.o.d -o src/model_P.p/tools_model_P.cc.o -c ../src/tools/model_P.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/model_P.cc:21:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/model_P.cc:21:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[206/292] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[207/292] c++ -Isrc/stats-select.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/stats-select.p/tools_stats-select.cc.o -MF src/stats-select.p/tools_stats-select.cc.o.d -o src/stats-select.p/tools_stats-select.cc.o -c ../src/tools/stats-select.cc
[208/292] c++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[209/292] c++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/statreport.p/tools_statreport.cc.o -MF src/statreport.p/tools_statreport.cc.o.d -o src/statreport.p/tools_statreport.cc.o -c ../src/tools/statreport.cc
../src/tools/statreport.cc: In function ‘void show_mode(const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool)’:
../src/tools/statreport.cc:300:24: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
300 | auto m = mode(total);
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[210/292] c++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[211/292] c++ -Isrc/alignment-gild.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-gild.p/tools_alignment-gild.cc.o -MF src/alignment-gild.p/tools_alignment-gild.cc.o.d -o src/alignment-gild.p/tools_alignment-gild.cc.o -c ../src/tools/alignment-gild.cc
[212/292] c++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[213/292] c++ -Isrc/alignment-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-consensus.p/tools_alignment-consensus.cc.o -MF src/alignment-consensus.p/tools_alignment-consensus.cc.o.d -o src/alignment-consensus.p/tools_alignment-consensus.cc.o -c ../src/tools/alignment-consensus.cc
[214/292] c++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[215/292] c++ -Isrc/alignment-chop-internal.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -MF src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o.d -o src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -c ../src/tools/alignment-chop-internal.cc
[216/292] c++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[217/292] c++ -Isrc/alignment-indices.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-indices.p/tools_alignment-indices.cc.o -MF src/alignment-indices.p/tools_alignment-indices.cc.o.d -o src/alignment-indices.p/tools_alignment-indices.cc.o -c ../src/tools/alignment-indices.cc
[218/292] c++ -Isrc/alignment-max.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-max.p/tools_alignment-max.cc.o -MF src/alignment-max.p/tools_alignment-max.cc.o.d -o src/alignment-max.p/tools_alignment-max.cc.o -c ../src/tools/alignment-max.cc
[219/292] c++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[220/292] c++ -Isrc/alignment-translate.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-translate.p/tools_alignment-translate.cc.o -MF src/alignment-translate.p/tools_alignment-translate.cc.o.d -o src/alignment-translate.p/tools_alignment-translate.cc.o -c ../src/tools/alignment-translate.cc
[221/292] c++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[222/292] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[223/292] c++ -Isrc/alignment-info.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-info.p/tools_alignment-info.cc.o -MF src/alignment-info.p/tools_alignment-info.cc.o.d -o src/alignment-info.p/tools_alignment-info.cc.o -c ../src/tools/alignment-info.cc
[224/292] c++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[225/292] c++ -Isrc/alignment-find.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-find.p/tools_alignment-find.cc.o -MF src/alignment-find.p/tools_alignment-find.cc.o.d -o src/alignment-find.p/tools_alignment-find.cc.o -c ../src/tools/alignment-find.cc
[226/292] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[227/292] c++ -Isrc/tree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -MF src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o.d -o src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -c ../src/tools/tree-mean-lengths.cc
[228/292] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[229/292] c++ -Isrc/mctree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -MF src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o.d -o src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -c ../src/tools/mctree-mean-lengths.cc
[230/292] c++ -Isrc/trees-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-consensus.p/tools_trees-consensus.cc.o -MF src/trees-consensus.p/tools_trees-consensus.cc.o.d -o src/trees-consensus.p/tools_trees-consensus.cc.o -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1666 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[231/292] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[232/292] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[233/292] c++ -Isrc/alignment-cat.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-cat.p/tools_alignment-cat.cc.o -MF src/alignment-cat.p/tools_alignment-cat.cc.o.d -o src/alignment-cat.p/tools_alignment-cat.cc.o -c ../src/tools/alignment-cat.cc
[234/292] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[235/292] c++ -Isrc/pickout.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/pickout.p/tools_pickout.cc.o -MF src/pickout.p/tools_pickout.cc.o.d -o src/pickout.p/tools_pickout.cc.o -c ../src/tools/pickout.cc
[236/292] c++ -Isrc/trees-to-SRQ.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -MF src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o.d -o src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -c ../src/tools/trees-to-SRQ.cc
[237/292] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[238/292] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[239/292] c++ -Isrc/cut-range.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/cut-range.p/tools_cut-range.cc.o -MF src/cut-range.p/tools_cut-range.cc.o.d -o src/cut-range.p/tools_cut-range.cc.o -c ../src/tools/cut-range.cc
[240/292] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[241/292] c++ -Isrc/trees-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-distances.p/tools_trees-distances.cc.o -MF src/trees-distances.p/tools_trees-distances.cc.o.d -o src/trees-distances.p/tools_trees-distances.cc.o -c ../src/tools/trees-distances.cc
[242/292] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[243/292] c++ -Isrc/alignments-diff.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignments-diff.p/tools_alignments-diff.cc.o -MF src/alignments-diff.p/tools_alignments-diff.cc.o.d -o src/alignments-diff.p/tools_alignments-diff.cc.o -c ../src/tools/alignments-diff.cc
[244/292] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[245/292] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[246/292] c++ -Isrc/alignment-thin.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-thin.p/tools_alignment-thin.cc.o -MF src/alignment-thin.p/tools_alignment-thin.cc.o.d -o src/alignment-thin.p/tools_alignment-thin.cc.o -c ../src/tools/alignment-thin.cc
[247/292] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[248/292] c++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc
[249/292] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_colors.cc.o -MF src/alignment-draw.p/tools_colors.cc.o.d -o src/alignment-draw.p/tools_colors.cc.o -c ../src/tools/colors.cc
[250/292] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_bootstrap.cc.o -MF src/trees-bootstrap.p/tools_bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_bootstrap.cc.o -c ../src/tools/bootstrap.cc
[251/292] c++ -Isrc/alignment-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-distances.p/tools_alignment-distances.cc.o -MF src/alignment-distances.p/tools_alignment-distances.cc.o.d -o src/alignment-distances.p/tools_alignment-distances.cc.o -c ../src/tools/alignment-distances.cc
[252/292] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[253/292] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_alignment-draw.cc.o -MF src/alignment-draw.p/tools_alignment-draw.cc.o.d -o src/alignment-draw.p/tools_alignment-draw.cc.o -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<T> convertTo(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[254/292] c++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[255/292] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc
../src/tools/trees-bootstrap.cc: In function ‘std::pair<double, double> am_sdsf(const tree_sample_collection&, int, const std::map<boost::dynamic_bitset<>, p_counts>&, double)’:
../src/tools/trees-bootstrap.cc:567:117: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | am_sdsf(const tree_sample_collection& tree_dists, int d, const map<dynamic_bitset<>, p_counts>& counts, double min_f)
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
[256/292] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[257/292] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md
[258/292] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[259/292] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md
[260/292] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md
[261/292] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md
[262/292] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md
[263/292] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md
[264/292] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md
[265/292] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md
[266/292] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md
[267/292] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md
[268/292] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md
[269/292] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc
[270/292] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[271/292] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md
[272/292] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md
[273/292] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc
../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’:
../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable]
3351 | int right1 = MC1.mapping[b1];
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/10/bits/stl_vector.h: In function ‘MC_tree_with_lengths get_MC_tree_with_lengths(const string&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[274/292] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[275/292] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md
[276/292] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md
[277/292] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md
[278/292] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md
[279/292] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/pickout.md
[280/292] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/cut-range.md
[281/292] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md
[282/292] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md
[283/292] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md
[284/292] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md
[285/292] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md
[286/292] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md
[287/292] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md
[288/292] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md
[289/292] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md
[290/292] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md
[291/292] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc
[292/292] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
dh_auto_test -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test
ninja: Entering directory `/<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/obj-arm-linux-gnueabihf'
[1/4] Generating git-version.h with a custom command
1/36 bali-phy version OK 0.02s
2/36 bali-phy help OK 0.05s
3/36 bali-phy 5d test OK 14.66s
4/36 bali-phy 5d +A 50 OK 35.08s
5/36 bali-phy 48 +A 3 OK 51.40s
6/36 bali-phy 5d -A 200 OK 32.98s
7/36 model_P --help OK 0.02s
8/36 statreport --help OK 0.02s
9/36 stats-select --help OK 0.04s
10/36 alignment-gild --help OK 0.04s
11/36 alignment-consensus --help OK 0.03s
12/36 alignment-max --help OK 0.02s
13/36 alignment-chop-internal --help OK 0.02s
14/36 alignment-indices --help OK 0.03s
15/36 alignment-info --help OK 0.03s
16/36 alignment-cat --help OK 0.02s
17/36 alignment-translate --help OK 0.02s
18/36 alignment-find --help OK 0.02s
19/36 trees-consensus --help OK 0.05s
20/36 tree-mean-lengths --help OK 0.03s
21/36 mctree-mean-lengths --help OK 0.03s
22/36 trees-to-SRQ --help OK 0.03s
23/36 pickout --help OK 0.03s
24/36 cut-range --help OK 0.04s
25/36 trees-distances --help OK 0.06s
26/36 alignment-thin --help OK 0.05s
27/36 alignments-diff --help OK 0.02s
28/36 tree-tool --help OK 0.03s
29/36 alignment-distances --help OK 0.06s
30/36 alignment-draw --help OK 0.06s
31/36 trees-bootstrap --help OK 0.04s
32/36 draw-tree --help OK 0.04s
33/36 extract-ancestors --help OK 0.02s
34/36 summarize-ancestors --help OK 0.03s
35/36 subsample --help OK 0.02s
36/36 bali-phy testsuite OK 667.77s
Ok: 36
Expected Fail: 0
Fail: 0
Unexpected Pass: 0
Skipped: 0
Timeout: 0
Full log written to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=meson
dh_prep -a -O--buildsystem=meson
dh_auto_install -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && DESTDIR=/<<BUILDDIR>>/bali-phy-3.5.0.2\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/5] Generating git-version.h with a custom command
[1/2] Installing files.
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/IModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/MCMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Parameters.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/PopGen.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Prelude.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Range.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/BAliPhy/ATModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Bio/Alignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Bio/Alphabet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Bio/Sequence.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Bio/Alignment/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Bio/Alignment/Pairwise.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/Base.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/Enum.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/IO.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/Num.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/Real.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Compiler/ST.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Control/Monad.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Array.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/BitVector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Bool.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Either.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Eq.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Function.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Ix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/JSON.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Map.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Maybe.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Ord.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/ReadFile.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Set.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Text.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Data/Tuple.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Foreign/Introspection.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Foreign/Pair.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Foreign/String.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Foreign/Vector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Random.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Beta.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Binomial.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Categorical.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Cauchy.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Discrete.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Exponential.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/FakeDist.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Gamma.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Geometric.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Laplace.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Mixture.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Normal.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Poisson.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/Probability/Distribution/Uniform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/Codons.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/Doublets.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/Frequency.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/Likelihood.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/Nucleotides.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/SModel/ReversibleMarkov.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/haskell/System/Environment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/bernoulli.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/beta.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/binomial.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/cauchy.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/dirichlet.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/dirichlet_on.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/geometric.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/iid.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/log_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/log_laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/poisson.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/shifted_exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/shifted_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/distributions/uniform_int.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/add.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/codons.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/cos.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/div.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/dna.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/exp.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/getAlphabet.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/getAminoAcids.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/getNucleotides.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/intToDouble.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/length.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/letter_pairs.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/letters.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/log.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/map.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/mul.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/num_branches.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/quantile.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/replicate.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/rna.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/sin.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/sqrt.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/standard_code.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/sub.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/take.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/tan.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/uniform_discretize.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/unit_mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/zip.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/zipWith.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/constructors/Cons.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/constructors/Nil.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/functions/constructors/Pair.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/branch_site.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/dNdS.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/density.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/empirical.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/equ.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/f.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/f1x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/f3x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/f61.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/f81.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/fMutSel.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/fMutSel0.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/fe.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/get_q.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/gtr.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/gtr_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/gwF.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/gy94.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/gy94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/hky85.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/hky85_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/inv.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/jc69.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/jtt.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/k80.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/lg08.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/lg08_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m1a.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m2a.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m2a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m3.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m3_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m7.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m8.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m8a.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/m8a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mg94.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mg94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mg94k.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/multiMixtureModel.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/multi_rate.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mut_sel.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/mut_sel_aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/pam.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/rna_16a.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/rs05.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/rs07.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/rs07_relaxed_rates.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/sample.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/tn93.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/tn93_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/wag.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/wag_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x2_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x2x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x3_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/x3x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Covarion/galtier01.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Covarion/huelsenbeck02.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Covarion/ts98.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Covarion/wang07.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Frequencies/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Rates/free.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Rates/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/bindings/models/Rates/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/alphabets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/parameters.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/alphabets/Codons.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/alphabets/Doublets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/alphabets/Triplets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/alphabets/genetic-code.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/Rao-Blackwellize.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/align.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/alphabet.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/branch-lengths.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/disable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/enable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/imodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/iterations.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/link.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/model.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/name.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/package-path.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/pre-burnin.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/print.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/scale.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/seed.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/set.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/smodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/subsample.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/test.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/tree.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/unalign.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/verbose.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/commands/version.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/help/parameters/priors.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo6.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo5.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo4.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo3.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo2.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Demo1.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Coalmine.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/models/Airline.hs to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/25.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/48.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/12d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/48b.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/EF-Tu/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/10-globins.xml to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/bglobin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/few-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/few.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/many-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/many.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Globins/some.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ITS/5.8S.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/README.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/cleaned.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/config2.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/orig.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/ferns/orig.nex to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/NOTES.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/keep.pl to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.gb to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30.aln to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/37.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/additional.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/other.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/paper.txt to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/table1.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing src/bali-phy/bali-phy to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/builtins/Array.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Data.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Prelude.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alphabet.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Pair.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Modifiables.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alignment.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/PopGen.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Distribution.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Range.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SModel.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/MCMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Vector.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Environment.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Real.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Bits.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Foreign.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Text.so to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/model_P to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/statreport to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/stats-select to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-gild to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-max to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-chop-internal to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-indices to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-info to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-cat to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-translate to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-find to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/trees-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/tree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/mctree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/trees-to-SRQ to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/pickout to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/cut-range to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/trees-distances to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-thin to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignments-diff to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/tree-tool to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-distances to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-draw to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/trees-bootstrap to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/draw-tree to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/extract-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/summarize-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing src/bali-subsample to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing doc/bali-phy.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/model_P.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/statreport.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/stats-select.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-gild.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-max.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-chop-internal.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-indices.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-info.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-cat.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-translate.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-find.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/mctree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-to-SRQ.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/pickout.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/cut-range.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-thin.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignments-diff.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-tool.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-draw.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-bootstrap.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/draw-tree.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/extract-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/summarize-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-subsample.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bp-analyze.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-phy-pkg.1 to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/share/man/man1
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/bali-phy-pkg to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot1.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot2.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot3.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot2-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot1-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/scripts/tree-plot3-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
dh_installdocs -a -O--buildsystem=meson
dh_installchangelogs -a -O--buildsystem=meson
dh_installman -a -O--buildsystem=meson
dh_installsystemduser -a -O--buildsystem=meson
dh_lintian -a -O--buildsystem=meson
dh_perl -a -O--buildsystem=meson
dh_link -a -O--buildsystem=meson
dh_strip_nondeterminism -a -O--buildsystem=meson
dh_compress -a -O--buildsystem=meson
dh_fixperms -a -O--buildsystem=meson
dh_missing -a -O--buildsystem=meson
dh_dwz -a -a -O--buildsystem=meson
dwz: debian/bali-phy/usr/bin/alignment-cat: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-chop-internal: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-draw: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-find: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-gild: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-indices: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-info: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-max: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-thin: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-translate: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignments-diff: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-phy: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-subsample: .debug_info section not present
dwz: debian/bali-phy/usr/bin/cut-range: .debug_info section not present
dwz: debian/bali-phy/usr/bin/draw-tree: .debug_info section not present
dwz: debian/bali-phy/usr/bin/extract-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/mctree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/model_P: .debug_info section not present
dwz: debian/bali-phy/usr/bin/pickout: .debug_info section not present
dwz: debian/bali-phy/usr/bin/statreport: .debug_info section not present
dwz: debian/bali-phy/usr/bin/stats-select: .debug_info section not present
dwz: debian/bali-phy/usr/bin/summarize-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-tool: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-bootstrap: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-to-SRQ: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alignment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alphabet.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Array.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Bits.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Data.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Distribution.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Environment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Foreign.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/MCMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Modifiables.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Pair.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/PopGen.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Prelude.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Range.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Real.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SModel.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Text.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Vector.so: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -a -a -O--buildsystem=meson
dh_makeshlibs -a -a -O--buildsystem=meson
dh_shlibdeps -a -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN11context_ref13set_reg_valueEiO7closure: it's probably a plugin
dpkg-shlibdeps: warning: 38 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution20sample_root_sequenceERK23Likelihood_Cache_BranchS2_S2_RK20pairwise_alignment_tS5_S5_RKN8bali_phy6matrixIdEE: it's probably a plugin
dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z12find_columnsRK9alignmentRKSt8functionIFbiEE: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/summarize-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZTI8Doublets: it's probably a plugin
dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z10normal_pdfddd: it's probably a plugin
dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z16portable_getlineRSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--buildsystem=meson
dh_gencontrol -a -O--buildsystem=meson
dh_md5sums -a -O--buildsystem=meson
dh_builddeb -a -O--buildsystem=meson
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.5.0.2+dfsg-1_armhf.deb'.
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.5.0.2+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bali-phy_3.5.0.2+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-09-28T06:12:51Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bali-phy_3.5.0.2+dfsg-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 25 Sep 2020 15:50:32 +0200
Source: bali-phy
Binary: bali-phy bali-phy-dbgsym
Architecture: armhf
Version: 3.5.0.2+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
bali-phy - Bayesian Inference of Alignment and Phylogeny
Changes:
bali-phy (3.5.0.2+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* debhelper-compat 13 (routine-update)
* Rules-Requires-Root: no (routine-update)
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69727dcf8b112c128575e023cb49ad1dfcb0e78c 4556044 bali-phy_3.5.0.2+dfsg-1_armhf.deb
Checksums-Sha256:
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2c38ab91788baf3e8fc3bb1d616dae7fde28c7cba3ba2017dbe7f531781363ae 7980 bali-phy_3.5.0.2+dfsg-1_armhf.buildinfo
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Files:
f51f1d3a4c062a0e5d31a3384edfa910 689212 debug optional bali-phy-dbgsym_3.5.0.2+dfsg-1_armhf.deb
4233d30166881b4ae366f3f20308fcac 7980 science optional bali-phy_3.5.0.2+dfsg-1_armhf.buildinfo
dd9c5dc412b98d035bfc31813f07685c 4556044 science optional bali-phy_3.5.0.2+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bali-phy-dbgsym_3.5.0.2+dfsg-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 689212 bytes: control archive=2792 bytes.
2357 bytes, 12 lines control
5194 bytes, 49 lines md5sums
Package: bali-phy-dbgsym
Source: bali-phy
Version: 3.5.0.2+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7067
Depends: bali-phy (= 3.5.0.2+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for bali-phy
Build-Ids: 06c74a822d206e7099d086f074020357f9d48dd2 0a68ac9ac6e05e149c99508b73424cd485d61dd7 0d1564e1b4979a2bc001a164914c46c112522bdf 1416b7db2d3ee2178b8e65bef218420f8ec7151b 1c8b6a98fc00825343cf6f085958632cd76b3457 28fe9718e178f610a7ed185a9ab78df8e96eeb14 2a3224921dac82f2405d18ba491b8bf194ffaac5 302ec53626d41bde22e52413b3614f23bbfab818 30d11f5a029ab92f4d647bab1f61c5241c6713ea 324b6c6d43de5eb5ae6e89264eb81cbbdb0babf5 40fd7fa55a13d94f81606b09121054d3a7124e8d 4eeb385e04d73692b542b330540e13962c5ac178 5786688ffbf6fa678e1d1c30cf2b451bac9dd34c 57b454a796818488968aaff3c8b0b23e807a2845 58891e3cabea618204752a63e05add9285530805 5cdaedaa0510091f6ab7b7da55339c65a0f08bb2 60e4394c4f38637b9c7e5b819de731b342d3085e 61ee345abbe153cf7e2937b084172817cb56d061 62de26da386932c0aa23e93e3bfe4e2aa52b3b80 65d7c80fc741b1dafe6e6a7138bf36b22fddad8e 675236dedb193480824beb6465d080c7b8eba282 6c12318557d1381c1caba89d4b498a7a77deea94 70b0288aed755e90e5c6a6f5d59cd5fa89d2a106 76ca1ba69d650fe75fd436a61a4651132c2efc69 7dbc0f1034b3886702dea735d30ae03f20cf05a4 7f6b8fdd48eff87969ce729ebac9aca6f1663e84 867d8f1291ef448d6a06c8b44177fa67a7e260bf 87534f036c248ee1d976aa2baaebf90a7c911bf0 8b9a5383ecc087cfe6ca81e911beb573e1503ea8 9205e05b01fd254e98ef530730226bdfea0b3be0 92246a1f4d4c3501b038dcca024dc45e35d0ba02 9802dfb0da9c7f68c5bf8f1d7f9347efbcd533a3 98fbca35b87b2a9c65b128f2a6d289b80cb804ad 99b573f3f89732c95507134e6c98ef48fee54cf3 9acb504df48cc907fd9a4e764bc6345afa69f11c a22309b464bbc01a8af24631fd6a9f0ebcac3ae0 aa48ed82864deb62cc2ab445159022023a7401be b0b26bd00aeeee51321f256978f4e478a3755de9 b647d2fde5964017c65594459982b0efe366fdf9 b85fc4638f6db080707f5682bacda095ca1823c9 c0037e2a3974c5e73c8869506cb318ce1210a50b c198fdd047412468766409129fa351b10138f9ea c95042a123937efe8dcc0bdc9434e4b13a690c47 c9d662372dc7a037a14065b9f3842c0c83347d50 cdf5dc30e51093fd0d7274d68dd269526f45c7dd d35acd64f8c572ea17d872583aa03be1a66455eb dac47466a142baa4daf1b167d1b01c6b2498d37a e083dd7729c2e2f72ff288bc40f24f107d6c4a6d e651bc4a07743b114502dd477d21ae73847c2d66
drwxr-xr-x root/root 0 2020-09-25 13:50 ./
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 17100 2020-09-25 13:50 ./usr/lib/debug/.build-id/06/c74a822d206e7099d086f074020357f9d48dd2.debug
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root 217856 2020-09-25 13:50 ./usr/lib/debug/.build-id/0a/68ac9ac6e05e149c99508b73424cd485d61dd7.debug
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/0d/
-rw-r--r-- root/root 246864 2020-09-25 13:50 ./usr/lib/debug/.build-id/0d/1564e1b4979a2bc001a164914c46c112522bdf.debug
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root 13440 2020-09-25 13:50 ./usr/lib/debug/.build-id/14/16b7db2d3ee2178b8e65bef218420f8ec7151b.debug
drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/lib/debug/.build-id/1c/
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bali-phy_3.5.0.2+dfsg-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 4556044 bytes: control archive=13080 bytes.
1119 bytes, 21 lines control
42250 bytes, 493 lines md5sums
Package: bali-phy
Version: 3.5.0.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29250
Depends: libboost-chrono1.71.0, libboost-filesystem1.71.0, libboost-program-options1.71.0, libboost-random1.71.0, libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.5), libstdc++6 (>= 9), perl:any, python3
Recommends: r-base, gnuplot
Suggests: figtree, seaview
Section: science
Priority: optional
Homepage: http://www.bali-phy.org
Description: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
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+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 138308
Build-Time: 1527
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1061
Job: bali-phy_3.5.0.2+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 2610
Source-Version: 3.5.0.2+dfsg-1
Space: 138308
Status: successful
Version: 3.5.0.2+dfsg-1
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Finished at 2020-09-28T06:12:51Z
Build needed 00:43:30, 138308k disk space