Build log for bali-phy (3.5.0.1+dfsg-1) on armhf

bali-phy → 3.5.0.1+dfsg-1 → armhf → 2020-03-24 17:46:29

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| bali-phy 3.5.0.1+dfsg-1 (armhf)              Tue, 24 Mar 2020 17:11:24 +0000 |
+==============================================================================+

Package: bali-phy
Version: 3.5.0.1+dfsg-1
Source Version: 3.5.0.1+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-a203b752-976e-4386-97fe-b1d945142d44' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 9s (2591 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1106 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (dsc) [2241 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (tar) [1100 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (diff) [4312 B]
Fetched 1106 kB in 0s (3110 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-5ouzc4/bali-phy-3.5.0.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-5ouzc4' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-hfVAAu/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-hfVAAu/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-hfVAAu/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9729 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (66.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12230 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
Filtered Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-hfVAAu/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Sources [586 B]
Get:5 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ Packages [669 B]
Fetched 2588 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libblkid-dev libboost-chrono-dev libboost-chrono1.67-dev
  libboost-chrono1.67.0 libboost-dev libboost-filesystem-dev
  libboost-filesystem1.67-dev libboost-filesystem1.67.0
  libboost-program-options-dev libboost-program-options1.67-dev
  libboost-program-options1.67.0 libboost-random-dev libboost-random1.67-dev
  libboost-random1.67.0 libboost-system-dev libboost-system1.67-dev
  libboost-system1.67.0 libboost1.67-dev libbsd0 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3
  libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev
  libfreetype-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6
  libicu63 liblzo2-2 libmagic-mgc libmagic1 libmount-dev libmpdec2 libpcre16-3
  libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng-dev libpng16-16 libpthread-stubs0-dev libpython3-stdlib
  libpython3.7-minimal libpython3.7-stdlib librange-v3-dev libselinux1-dev
  libsepol1-dev libsigsegv2 libsm-dev libsm6 libssl1.1 libsub-override-perl
  libtinfo5 libtool libuchardet0 libx11-6 libx11-data libx11-dev libxau-dev
  libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2
  libxrender-dev libxrender1 m4 man-db meson mime-support ninja-build
  nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.7
  python3.7-minimal sensible-utils ucf uuid-dev x11-common x11proto-core-dev
  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libboost-doc libboost1.67-doc libboost-atomic1.67-dev
  libboost-container1.67-dev libboost-context1.67-dev
  libboost-contract1.67-dev libboost-coroutine1.67-dev
  libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
  libboost-graph1.67-dev libboost-graph-parallel1.67-dev
  libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev
  libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev
  libboost-numpy1.67-dev libboost-python1.67-dev libboost-regex1.67-dev
  libboost-serialization1.67-dev libboost-signals1.67-dev
  libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-thread1.67-dev
  libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev
  libboost1.67-tools-dev libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc
  freetype2-doc libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin
  | libgdk-pixbuf2.0-dev libxml2-utils libice-doc libsm-doc libtool-doc
  gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc
  m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex
  texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf
  librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex
  libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv
  python3.7-doc binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
  libpng-tools librange-v3-doc libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libblkid-dev libboost-chrono-dev libboost-chrono1.67-dev
  libboost-chrono1.67.0 libboost-dev libboost-filesystem-dev
  libboost-filesystem1.67-dev libboost-filesystem1.67.0
  libboost-program-options-dev libboost-program-options1.67-dev
  libboost-program-options1.67.0 libboost-random-dev libboost-random1.67-dev
  libboost-random1.67.0 libboost-system-dev libboost-system1.67-dev
  libboost-system1.67.0 libboost1.67-dev libbsd0 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3
  libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev
  libfreetype-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6
  libicu63 liblzo2-2 libmagic-mgc libmagic1 libmount-dev libmpdec2 libpcre16-3
  libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng-dev libpng16-16 libpthread-stubs0-dev libpython3-stdlib
  libpython3.7-minimal libpython3.7-stdlib librange-v3-dev libselinux1-dev
  libsepol1-dev libsigsegv2 libsm-dev libsm6 libssl1.1 libsub-override-perl
  libtinfo5 libtool libuchardet0 libx11-6 libx11-data libx11-dev libxau-dev
  libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2
  libxrender-dev libxrender1 m4 man-db meson mime-support ninja-build
  nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.7
  python3.7-minimal sbuild-build-depends-bali-phy-dummy sensible-utils ucf
  uuid-dev x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
  xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 139 newly installed, 0 to remove and 7 not upgraded.
Need to get 73.9 MB of archives.
After this operation, 468 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-hfVAAu/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.34-0.1 [92.5 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.34-0.1 [212 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67.0 armhf 1.67.0-17 [229 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67.0 armhf 1.67.0-17 [232 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67-dev armhf 1.67.0-17 [234 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono-dev armhf 1.67.0.2+b11 [4872 B]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67.0 armhf 1.67.0-17 [255 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67-dev armhf 1.67.0-17 [231 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67-dev armhf 1.67.0-17 [261 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.67.0.2+b11 [4284 B]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67.0 armhf 1.67.0-17 [333 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67-dev armhf 1.67.0-17 [378 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.67.0.2+b11 [4260 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.67.0 armhf 1.67.0-17 [231 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.67-dev armhf 1.67.0-17 [231 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libboost-random-dev armhf 1.67.0.2+b11 [4252 B]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.67.0.2+b11 [4388 B]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-5 [133 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-5 [108 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-5 [99.4 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.1-2 [482 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.1-2 [63.8 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2019.2-1 [593 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2019.2-1 [3256 B]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.13.1-5 [170 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.9-2 [766 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2019.2-1 [3256 B]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.13.1-5 [112 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.13.1-5 [101 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.3-3 [57.9 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.64.1-1 [1157 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.64.1-1 [128 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.64.1-1 [169 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.34-0.1 [212 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 3.0-1 [306 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 3.0-1 [158 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.64.1-1 [1449 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-2 [850 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf librange-v3-dev all 0.10.0-1 [219 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf ninja-build armhf 1.10.0-1 [90.4 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf meson all 0.52.1-1 [358 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf nlohmann-json3-dev all 3.7.3-1 [751 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf pandoc-data all 2.5-3 [349 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf pandoc armhf 2.5-3+b1 [18.6 MB]
debconf: delaying package configuration, since apt-utils is not installed
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-4+rpi2 dpkg-dev_1.19.7 g++-9_9.3.0-3+rpi1 gcc-9_9.3.0-3+rpi1 libc6-dev_2.30-2+rpi1 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200312-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.0+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-4+rpi2 binutils-arm-linux-gnueabihf_2.34-4+rpi2 binutils-common_2.34-4+rpi2 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-3+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-3+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200312-2+rpi1 gcc-9_9.3.0-3+rpi1 gcc-9-base_9.3.0-3+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-3 gnupg-l10n_2.2.19-3 gnupg-utils_2.2.19-3 gpg_2.2.19-3 gpg-agent_2.2.19-3 gpg-wks-client_2.2.19-3 gpg-wks-server_2.2.19-3 gpgconf_2.2.19-3 gpgsm_2.2.19-3 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libapt-pkg6.0_2.0.0+b1 libarchive-zip-perl_1.68-1 libasan5_9.3.0-3+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200312-2+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-4+rpi2 libblkid-dev_2.34-0.1 libblkid1_2.34-0.1 libboost-chrono-dev_1.67.0.2+b11 libboost-chrono1.67-dev_1.67.0-17 libboost-chrono1.67.0_1.67.0-17 libboost-dev_1.67.0.2+b11 libboost-filesystem-dev_1.67.0.2+b11 libboost-filesystem1.67-dev_1.67.0-17 libboost-filesystem1.67.0_1.67.0-17 libboost-program-options-dev_1.67.0.2+b11 libboost-program-options1.67-dev_1.67.0-17 libboost-program-options1.67.0_1.67.0-17 libboost-random-dev_1.67.0.2+b11 libboost-random1.67-dev_1.67.0-17 libboost-random1.67.0_1.67.0-17 libboost-system-dev_1.67.0.2+b11 libboost-system1.67-dev_1.67.0-17 libboost-system1.67.0_1.67.0-17 libboost1.67-dev_1.67.0-17 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-2+rpi1 libc-dev-bin_2.30-2+rpi1 libc6_2.30-2+rpi1 libc6-dev_2.30-2+rpi1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_10-20200312-2+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-4+rpi2 libctf0_2.34-4+rpi2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libeigen3-dev_3.3.7-2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi-dev_3.3-3 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfreetype-dev_2.10.1-2 libfreetype6_2.10.1-2 libfreetype6-dev_2.10.1-2 libgcc-9-dev_9.3.0-3+rpi1 libgcc-s1_10-20200312-2+rpi1 libgcc1_1:10-20200312-2+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libglib2.0-bin_2.64.1-1 libglib2.0-data_2.64.1-1 libglib2.0-dev_2.64.1-1 libglib2.0-dev-bin_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200312-2+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 liblzo2-2_2.10-2 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount-dev_2.34-0.1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-12 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.7.5-3 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 librange-v3-dev_0.10.0-1 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1 libselinux1-dev_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsepol1-dev_3.0-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200312-2+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200312-2+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libx11-dev_2:1.6.9-2 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-5 libxcb-render0-dev_1.13.1-5 libxcb-shm0_1.13.1-5 libxcb-shm0-dev_1.13.1-5 libxcb1_1.13.1-5 libxcb1-dev_1.13.1-5 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-4 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 meson_0.52.1-1 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 ninja-build_1.10.0-1 nlohmann-json3-dev_3.7.3-1 pandoc_2.5-3+b1 pandoc-data_2.5-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 python3_3.7.5-3 python3-distutils_3.8.2-2 python3-lib2to3_3.8.2-2 python3-minimal_3.7.5-3 python3.7_3.7.7-1 python3.7-minimal_3.7.7-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-7 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 uuid-dev_2.34-0.1 x11-common_1:7.7+20 x11proto-core-dev_2019.2-1 x11proto-dev_2019.2-1 x11proto-xext-dev_2019.2-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Mar  6 10:05:00 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.5.0.1+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg
dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a203b752-976e-4386-97fe-b1d945142d44
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.5.0.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem=meson
   dh_auto_clean -O--buildsystem=meson
   dh_autoreconf_clean -O--buildsystem=meson
   dh_clean -O--buildsystem=meson
 debian/rules build-arch
dh build-arch --buildsystem=meson
   dh_update_autotools_config -a -O--buildsystem=meson
   dh_autoreconf -a -O--buildsystem=meson
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg'
dh_auto_configure -- -Dextra-tools=false --buildtype=release
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf -Dextra-tools=false --buildtype=release
The Meson build system
Version: 0.52.1
Source dir: /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Project version: 3.5
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: ['-Wl,-z,relro', '-Wl,-z,now']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: ['-Wl,-z,relro', '-Wl,-z,now']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: ['-Wl,-z,relro', '-Wl,-z,now']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
C compiler for the host machine: cc (gcc 9.3.0 "cc (Raspbian 9.3.0-3+rpi1) 9.3.0")
C linker for the host machine: GNU ld.bfd 2.34
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: ['-Wl,-z,relro', '-Wl,-z,now']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
C++ compiler for the host machine: c++ (gcc 9.3.0 "c++ (Raspbian 9.3.0-3+rpi1) 9.3.0")
C++ linker for the host machine: GNU ld.bfd 2.34
Host machine cpu family: arm
Host machine cpu: armv8l
Has header "sys/resource.h" : YES 
Has header "fenv.h" : YES 
Checking for function "log2" : YES 
Checking for function "feenableexcept" : YES 
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-sign-compare -Wsign-compare: YES 
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES 
Compiler for C++ supports arguments -Woverloaded-virtual: YES 
Compiler for C++ supports arguments -Wstrict-aliasing: YES 
Compiler for C++ supports arguments -Wno-unknown-pragmas -Wunknown-pragmas: YES 
Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES 
Compiler for C++ supports arguments -funroll-loops: YES 
Compiler for C++ supports arguments -fno-math-errno: YES 
Compiler for C++ supports arguments -fno-signed-zeros: YES 
Found pkg-config: /usr/bin/pkg-config (0.29)
Run-time dependency cairo found: YES 1.16.0
Run-time dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.67
Run-time dependency eigen3 found: YES 3.3.7
Has header "nlohmann/json.hpp" : YES 
Library dl found: YES
Has header "range/v3/view/take.hpp" : YES 
Library m found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/tests/run-tests.py found: YES (/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/tests/run-tests.py)
Build targets in project: 86
Found ninja-1.10.0 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg'
   dh_auto_build -a -O--buildsystem=meson
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/292] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h]  (%cd)'
[2/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_pred.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -c ../src/util/string/pred.cc
[3/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_strip.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -c ../src/util/string/strip.cc
[4/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -c ../src/util/string/sanitize.cc
[5/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/log-level.cc.o' -MF 'src/util/ed6d25d@@util@sta/log-level.cc.o.d' -o 'src/util/ed6d25d@@util@sta/log-level.cc.o' -c ../src/util/log-level.cc
[6/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/myexception.cc.o' -MF 'src/util/ed6d25d@@util@sta/myexception.cc.o.d' -o 'src/util/ed6d25d@@util@sta/myexception.cc.o' -c ../src/util/myexception.cc
[7/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/range.cc.o' -MF 'src/util/ed6d25d@@util@sta/range.cc.o.d' -o 'src/util/ed6d25d@@util@sta/range.cc.o' -c ../src/util/range.cc
[8/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/demangle.cc.o' -MF 'src/util/ed6d25d@@util@sta/demangle.cc.o.d' -o 'src/util/ed6d25d@@util@sta/demangle.cc.o' -c ../src/util/demangle.cc
[9/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/mapping.cc.o' -MF 'src/util/ed6d25d@@util@sta/mapping.cc.o.d' -o 'src/util/ed6d25d@@util@sta/mapping.cc.o' -c ../src/util/mapping.cc
[10/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/text.cc.o' -MF 'src/util/ed6d25d@@util@sta/text.cc.o.d' -o 'src/util/ed6d25d@@util@sta/text.cc.o' -c ../src/util/text.cc
[11/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/io.cc.o' -MF 'src/util/ed6d25d@@util@sta/io.cc.o.d' -o 'src/util/ed6d25d@@util@sta/io.cc.o' -c ../src/util/io.cc
[12/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/rng.cc.o' -MF 'src/util/ed6d25d@@util@sta/rng.cc.o.d' -o 'src/util/ed6d25d@@util@sta/rng.cc.o' -c ../src/util/rng.cc
../src/util/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/util/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
   42 |      s <<= bits_per_read;
      |            ^~~~~~~~~~~~~
[13/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/permute.cc.o' -MF 'src/util/ed6d25d@@util@sta/permute.cc.o.d' -o 'src/util/ed6d25d@@util@sta/permute.cc.o' -c ../src/util/permute.cc
[14/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -MF 'src/util/ed6d25d@@util@sta/file-paths.cc.o.d' -o 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -c ../src/util/file-paths.cc
[15/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -MF 'src/util/ed6d25d@@util@sta/cmdline.cc.o.d' -o 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -c ../src/util/cmdline.cc
[16/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/string_split.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_split.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_split.cc.o' -c ../src/util/string/split.cc
[17/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -MF 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o.d' -o 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -c ../src/tree/newick-tokenizer.cc
[18/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/time.cc.o' -MF 'src/util/ed6d25d@@util@sta/time.cc.o.d' -o 'src/util/ed6d25d@@util@sta/time.cc.o' -c ../src/util/time.cc
[19/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree_sequencetree.cc.o' -MF 'src/25a6634@@common@sta/tree_sequencetree.cc.o.d' -o 'src/25a6634@@common@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[20/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/util/ed6d25d@@util@sta/ptree.cc.o' -MF 'src/util/ed6d25d@@util@sta/ptree.cc.o.d' -o 'src/util/ed6d25d@@util@sta/ptree.cc.o' -c ../src/util/ptree.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/util/include/util/ptree.H:5,
                 from ../src/util/ptree.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/util/include/util/ptree.H:5,
                 from ../src/util/ptree.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1335 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1335 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[21/292] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a 'src/util/ed6d25d@@util@sta/string_pred.cc.o' 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' 'src/util/ed6d25d@@util@sta/string_strip.cc.o' 'src/util/ed6d25d@@util@sta/string_split.cc.o' 'src/util/ed6d25d@@util@sta/log-level.cc.o' 'src/util/ed6d25d@@util@sta/io.cc.o' 'src/util/ed6d25d@@util@sta/range.cc.o' 'src/util/ed6d25d@@util@sta/demangle.cc.o' 'src/util/ed6d25d@@util@sta/mapping.cc.o' 'src/util/ed6d25d@@util@sta/cmdline.cc.o' 'src/util/ed6d25d@@util@sta/rng.cc.o' 'src/util/ed6d25d@@util@sta/permute.cc.o' 'src/util/ed6d25d@@util@sta/file-paths.cc.o' 'src/util/ed6d25d@@util@sta/ptree.cc.o' 'src/util/ed6d25d@@util@sta/text.cc.o' 'src/util/ed6d25d@@util@sta/myexception.cc.o' 'src/util/ed6d25d@@util@sta/time.cc.o'
[22/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' -MF 'src/25a6634@@common@sta/tree-align_n_indels.cc.o.d' -o 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' -c ../src/tree-align/n_indels.cc
[23/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree_randomtree.cc.o' -MF 'src/25a6634@@common@sta/tree_randomtree.cc.o.d' -o 'src/25a6634@@common@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[24/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree_tree-util.cc.o' -MF 'src/25a6634@@common@sta/tree_tree-util.cc.o.d' -o 'src/25a6634@@common@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[25/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' -MF 'src/25a6634@@common@sta/sequence_sequence-format.cc.o.d' -o 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[26/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/sequence_sequence.cc.o' -MF 'src/25a6634@@common@sta/sequence_sequence.cc.o.d' -o 'src/25a6634@@common@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[27/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree_tree.cc.o' -MF 'src/25a6634@@common@sta/tree_tree.cc.o.d' -o 'src/25a6634@@common@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[28/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/sequence_alphabet.cc.o' -MF 'src/25a6634@@common@sta/sequence_alphabet.cc.o.d' -o 'src/25a6634@@common@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[29/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_read-trees.cc.o' -MF 'src/25a6634@@common@sta/tools_read-trees.cc.o.d' -o 'src/25a6634@@common@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[30/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/alignment_load.cc.o' -MF 'src/25a6634@@common@sta/alignment_load.cc.o.d' -o 'src/25a6634@@common@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[31/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment-util.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[32/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment-random.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[33/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_inverse.cc.o' -MF 'src/25a6634@@common@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@common@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[34/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tree-align_link.cc.o' -MF 'src/25a6634@@common@sta/tree-align_link.cc.o.d' -o 'src/25a6634@@common@sta/tree-align_link.cc.o' -c ../src/tree-align/link.cc
[35/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/alignment_alignment.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[36/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_statistics.cc.o' -MF 'src/25a6634@@common@sta/tools_statistics.cc.o.d' -o 'src/25a6634@@common@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
                 from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[37/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/models_path.cc.o' -MF 'src/25a6634@@common@sta/models_path.cc.o.d' -o 'src/25a6634@@common@sta/models_path.cc.o' -c ../src/models/path.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/path.H:5,
                 from ../src/models/path.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[38/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' -MF 'src/25a6634@@common@sta/alignment_index-matrix.cc.o.d' -o 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[39/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_parsimony.cc.o' -MF 'src/25a6634@@common@sta/tools_parsimony.cc.o.d' -o 'src/25a6634@@common@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[40/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_partition.cc.o' -MF 'src/25a6634@@common@sta/tools_partition.cc.o.d' -o 'src/25a6634@@common@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[41/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_findroot.cc.o' -MF 'src/25a6634@@common@sta/tools_findroot.cc.o.d' -o 'src/25a6634@@common@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[42/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_tree-dist.cc.o' -MF 'src/25a6634@@common@sta/tools_tree-dist.cc.o.d' -o 'src/25a6634@@common@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[43/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_optimize.cc.o' -MF 'src/25a6634@@common@sta/tools_optimize.cc.o.d' -o 'src/25a6634@@common@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[44/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_mctree.cc.o' -MF 'src/25a6634@@common@sta/tools_mctree.cc.o.d' -o 'src/25a6634@@common@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[45/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/object.cc.o' -MF 'src/computation/973f3a2@@computation@sta/object.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/object.cc.o' -c ../src/computation/object.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/object.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/object.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string Box<T>::print() const [with T = bali_phy::matrix<double>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[46/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_distance-report.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-report.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[47/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_stats-table.cc.o' -MF 'src/25a6634@@common@sta/tools_stats-table.cc.o.d' -o 'src/25a6634@@common@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/tools/stats-table.H:29,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/tools/stats-table.H:29,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  171 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1428 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                                                          ^
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/tools/stats-table.H:29,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > parameter_values_children(const json&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1335 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/stats-table.H:23,
                 from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[48/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -MF 'src/25a6634@@common@sta/tools_joint-A-T.cc.o.d' -o 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[49/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-methods.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[50/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/closure.cc.o' -MF 'src/computation/973f3a2@@computation@sta/closure.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/closure.cc.o' -c ../src/computation/closure.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/closure.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[51/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' -c ../src/computation/expression/operator.cc
[52/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@common@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[53/292] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' 'src/25a6634@@common@sta/tree_sequencetree.cc.o' 'src/25a6634@@common@sta/tree_tree.cc.o' 'src/25a6634@@common@sta/tree_tree-util.cc.o' 'src/25a6634@@common@sta/tree_randomtree.cc.o' 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' 'src/25a6634@@common@sta/sequence_alphabet.cc.o' 'src/25a6634@@common@sta/sequence_sequence.cc.o' 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' 'src/25a6634@@common@sta/tools_read-trees.cc.o' 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' 'src/25a6634@@common@sta/alignment_load.cc.o' 'src/25a6634@@common@sta/alignment_alignment.cc.o' 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' 'src/25a6634@@common@sta/tree-align_link.cc.o' 'src/25a6634@@common@sta/models_path.cc.o' 'src/25a6634@@common@sta/tools_statistics.cc.o' 'src/25a6634@@common@sta/tools_partition.cc.o' 'src/25a6634@@common@sta/tools_tree-dist.cc.o' 'src/25a6634@@common@sta/tools_parsimony.cc.o' 'src/25a6634@@common@sta/tools_mctree.cc.o' 'src/25a6634@@common@sta/tools_stats-table.cc.o' 'src/25a6634@@common@sta/tools_findroot.cc.o' 'src/25a6634@@common@sta/tools_optimize.cc.o' 'src/25a6634@@common@sta/tools_distance-report.cc.o' 'src/25a6634@@common@sta/tools_inverse.cc.o' 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' 'src/25a6634@@common@sta/tools_distance-methods.cc.o' 'src/25a6634@@common@sta/tools_consensus-tree.cc.o'
[54/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -MF 'src/computation/973f3a2@@computation@sta/preprocess.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/preprocess.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[55/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/program.cc.o' -MF 'src/computation/973f3a2@@computation@sta/program.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/program.cc.o' -c ../src/computation/program.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/program.H:5,
                 from ../src/computation/program.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/program.H:5,
                 from ../src/computation/program.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[56/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/context.cc.o' -MF 'src/computation/973f3a2@@computation@sta/context.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/context.cc.o' -c ../src/computation/context.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/closure.H:4,
                 from ../src/computation/context.H:4,
                 from ../src/computation/context.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void context_ref::run_transition_kernels()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
[57/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/param.cc.o' -MF 'src/computation/973f3a2@@computation@sta/param.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/param.cc.o' -c ../src/computation/param.cc
[58/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/operations.cc.o' -MF 'src/computation/973f3a2@@computation@sta/operations.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/operations.cc.o' -c ../src/computation/operations.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/operations.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[59/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/loader.cc.o' -MF 'src/computation/973f3a2@@computation@sta/loader.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/loader.cc.o' -c ../src/computation/loader.cc
[60/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/module.cc.o' -MF 'src/computation/973f3a2@@computation@sta/module.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/module.cc.o' -c ../src/computation/module.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::string&, std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
                 from ../src/computation/module.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, symbol_info>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/c++/9/regex:52,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = symbol_info; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::load_constructors()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/c++/9/regex:38,
                 from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[61/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' -c ../src/computation/parser/driver.cc
[62/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' -c ../src/computation/parser/rename.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/deque:69,
                 from ../src/computation/parser/rename.cc:5:
/usr/include/c++/9/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/deque.tcc:766:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  766 |       deque<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/deque.tcc:766:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/deque.tcc:593:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  593 |       deque<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/deque.tcc:593:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/deque.tcc:633:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  633 |           _M_insert_aux(__pos, __first, __last, __n);
      |           ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/deque:67,
                 from ../src/computation/parser/rename.cc:5:
/usr/include/c++/9/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_deque.h:2056:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 2056 |    _M_range_insert_aux(__pos, __first, __last,
      |    ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref rename_infix_top(const Module&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘bound_var_info renamer_state::rename_rec_stmt(expression_ref&, const bound_var_info&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[63/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' -c ../src/computation/parser/desugar.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  171 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<expression_ref> desugar_state::parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1428 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                                                          ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1428 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                                                          ^
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[64/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' -c ../src/computation/parser/lexer.cc
[65/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' -c ../src/computation/parser/desugar-case.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  721 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
 1662 |    _M_range_insert(__pos, __first, __last,
      |    ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
 1662 |    _M_range_insert(__pos, __first, __last,
      |    ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/module.H:7,
                 from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector<equation_info_t>&, const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[66/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[67/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[68/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[69/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[70/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/apply.H:4,
                 from ../src/computation/expression/apply.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/apply.H:4,
                 from ../src/computation/expression/apply.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[71/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[72/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' -c ../src/computation/parser/parser.cc
In file included from /usr/include/c++/9/vector:67,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
  622 |       vector(initializer_list<value_type> __l,
      |       ^~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<expression_ref> make_String_vec(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator<yy::parser::stack_symbol_type>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_module(const string&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref type_apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, std::optional<int>&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from parser.y:14,
                 from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
parser.y: In member function ‘virtual int yy::parser::parse()’:
parser.y:890:56: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:979:56: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1135:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1136:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1137:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1138:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
[73/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:299:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
  299 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
      | ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[74/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/indexify.H:4,
                 from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<var>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[75/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_case.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[76/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[77/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[78/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_let.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/computation/expression/var.H:7,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[79/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_list.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::optional<EVector> list_to_evector(const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[80/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[81/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_var.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' -c ../src/computation/expression/var.cc
[82/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' -c ../src/computation/expression/random_variable.cc
[83/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' -c ../src/computation/expression/reg_var.cc
[84/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' -c ../src/computation/expression/modifiable.cc
[85/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' -c ../src/computation/expression/bool.cc
[86/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' -c ../src/computation/expression/maybe.cc
[87/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' -c ../src/computation/expression/resolved_symbol.cc
[88/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_args.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' -c ../src/computation/machine/args.cc
[89/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' -c ../src/computation/expression/do_block.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/do_block.H:3,
                 from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::empty_stmt()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::let(const Binds&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/do_block.H:3,
                 from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘expression_ref do_block::bind_and_log_model(const string&, const expression_ref&, std::vector<expression_ref>&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/do_block.H:3,
                 from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::rec(const do_block&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[90/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[91/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[92/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[93/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/9/set:60,
                 from ../src/computation/program.H:4,
                 from ../src/computation/machine/graph_register.H:11,
                 from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
                 from ../src/computation/program.H:7,
                 from ../src/computation/machine/graph_register.H:11,
                 from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/9/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[94/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc
[95/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' -c ../src/computation/machine/gc.cc
[96/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc
[97/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' -c ../src/computation/machine/effects.cc
[98/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' -c ../src/computation/optimization/free-vars.cc
[99/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' -c ../src/computation/optimization/float-out.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/optimization/float-out.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void float_binds_t::append_top(CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void float_out_from_module(std::vector<std::vector<std::pair<var, expression_ref> > >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[100/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[101/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[102/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' -c ../src/computation/optimization/set-levels.cc
[103/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<var, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<var>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<var> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[104/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[105/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -isystem../external/immer/ -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/util/include/util/range.H:4,
                 from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/util/include/util/range.H:4,
                 from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[106/292] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a 'src/computation/973f3a2@@computation@sta/object.cc.o' 'src/computation/973f3a2@@computation@sta/closure.cc.o' 'src/computation/973f3a2@@computation@sta/program.cc.o' 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' 'src/computation/973f3a2@@computation@sta/module.cc.o' 'src/computation/973f3a2@@computation@sta/loader.cc.o' 'src/computation/973f3a2@@computation@sta/context.cc.o' 'src/computation/973f3a2@@computation@sta/operations.cc.o' 'src/computation/973f3a2@@computation@sta/param.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o'
[107/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[108/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/math_pow2.cc.o' -MF 'src/25a6634@@baliphy@sta/math_pow2.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_pow2.cc.o' -c ../src/math/pow2.cc
[109/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[110/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[111/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' -MF 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[112/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_3way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -c ../src/dp/3way.cc
[113/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_5way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -c ../src/dp/5way.cc
[114/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_2way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_2way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_2way.cc.o' -c ../src/dp/2way.cc
[115/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[116/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[117/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[118/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/AIS.H:4,
                 from ../src/mcmc/AIS.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/AIS.H:4,
                 from ../src/mcmc/AIS.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[119/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[120/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[121/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[122/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[123/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from ../src/mcmc/mcmc.H:34,
                 from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
[124/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
[125/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[126/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
[127/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
[128/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[129/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc
[130/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' -MF 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o.d' -o 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[131/292] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md
[132/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/math_exponential.cc.o' -MF 'src/25a6634@@baliphy@sta/math_exponential.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_exponential.cc.o' -c ../src/math/exponential.cc
[133/292] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md
[134/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' -MF 'src/25a6634@@baliphy@sta/models_site-compression.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' -c ../src/models/site-compression.cc
[135/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' -MF 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o.d' -o 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[136/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/path.H:5,
                 from ../src/mcmc/setup.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void do_sampling(const boost::program_options::variables_map&, owned_ptr<Model>&, long int, std::ostream&, const std::vector<std::function<void(const Model&, long int)> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[137/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' -MF 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tree/tree.H:31,
                 from ../src/models/TreeInterface.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[138/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_rules.cc.o' -MF 'src/25a6634@@baliphy@sta/models_rules.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_rules.cc.o' -c ../src/models/rules.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
                 from ../src/models/rules.cc:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2187 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from ../src/models/rules.H:5,
                 from ../src/models/rules.cc:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  171 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1428 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                                                          ^
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from ../src/models/rules.H:5,
                 from ../src/models/rules.cc:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[139/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_parse.cc.o' -MF 'src/25a6634@@baliphy@sta/models_parse.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_parse.cc.o' -c ../src/models/parse.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/parse.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/parse.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[140/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_setup.cc.o' -MF 'src/25a6634@@baliphy@sta/models_setup.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1335 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1335 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::tuple<expression_ref, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, bool> get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[141/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_translate.cc.o' -MF 'src/25a6634@@baliphy@sta/models_translate.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_translate.cc.o' -c ../src/models/translate.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/translate.H:4,
                 from ../src/models/translate.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/models/translate.H:4,
                 from ../src/models/translate.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set<std::__cxx11::basic_string<char> >, const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[142/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_parameters.cc.o' -MF 'src/25a6634@@baliphy@sta/models_parameters.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from ../src/models/parameters.H:30,
                 from ../src/models/parameters.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const TreeInterface&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const Tree&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref tree_expression(const SequenceTree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<param, param, param>}; _Tp = std::tuple<param, param, param>; _Alloc = std::allocator<std::tuple<param, param, param> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::tuple<param, param, param> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<param>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘tree_constants::tree_constants(context*, const std::vector<std::__cxx11::basic_string<char> >&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<param> get_params_from_array(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<param> get_params_from_list(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Parameters*, int&, const alphabet&, const int&}; _Tp = data_partition_constants; _Alloc = std::allocator<data_partition_constants>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<data_partition_constants>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘Parameters::Parameters(const Program&, const key_map_t&, const std::vector<alignment>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const SequenceTree&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<int>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from ../src/models/parameters.H:30,
                 from ../src/models/parameters.cc:31:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::string generate_atmodel_program(int, const std::vector<expression_ref>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const model_t&, const std::vector<int>&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[143/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_unification.cc.o' -MF 'src/25a6634@@baliphy@sta/models_unification.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_unification.cc.o' -c ../src/models/unification.cc
In file included from /usr/include/c++/9/set:60,
                 from ../src/models/unification.H:4,
                 from ../src/models/unification.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ptree>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ptree>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ptree> >’} changed in GCC 7.1
 2187 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[144/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/probability_choose.cc.o' -MF 'src/25a6634@@baliphy@sta/probability_choose.cc.o.d' -o 'src/25a6634@@baliphy@sta/probability_choose.cc.o' -c ../src/probability/choose.cc
[145/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' -MF 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' -c ../src/tree-align/link2.cc
[146/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/models_model.cc.o' -MF 'src/25a6634@@baliphy@sta/models_model.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/container_hash/hash.hpp:20,
                 from /usr/include/boost/type_index/stl_type_index.hpp:43,
                 from /usr/include/boost/type_index.hpp:29,
                 from /usr/include/boost/variant/variant.hpp:21,
                 from /usr/include/boost/variant.hpp:17,
                 from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  171 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/container_hash/hash.hpp:20,
                 from /usr/include/boost/type_index/stl_type_index.hpp:43,
                 from /usr/include/boost/type_index.hpp:29,
                 from /usr/include/boost/variant/variant.hpp:21,
                 from /usr/include/boost/variant.hpp:17,
                 from ../src/models/model.cc:23:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1428 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                                                          ^
In file included from /usr/include/c++/9/set:60,
                 from ../src/models/model.cc:20:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
                 from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/container_hash/hash.hpp:20,
                 from /usr/include/boost/type_index/stl_type_index.hpp:43,
                 from /usr/include/boost/type_index.hpp:29,
                 from /usr/include/boost/variant/variant.hpp:21,
                 from /usr/include/boost/variant.hpp:17,
                 from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
                 from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json flatten_me(const json&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/container_hash/hash.hpp:20,
                 from /usr/include/boost/type_index/stl_type_index.hpp:43,
                 from /usr/include/boost/type_index.hpp:29,
                 from /usr/include/boost/variant/variant.hpp:21,
                 from /usr/include/boost/variant.hpp:17,
                 from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In function ‘Model::key_map_t parse_key_map(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[147/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -MF 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o.d' -o 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/models/model.H:34,
                 from ../src/imodel/imodel.H:29,
                 from ../src/imodel/imodel.cc:27:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
[148/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -MF 'src/25a6634@@baliphy@sta/probability_probability.cc.o.d' -o 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -c ../src/probability/probability.cc
[149/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' -MF 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o.d' -o 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[150/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' -MF 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' -c ../src/tree-align/n_indels2.cc
[151/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' -MF 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o.d' -o 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[152/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/version.cc.o' -MF 'src/25a6634@@baliphy@sta/version.cc.o.d' -o 'src/25a6634@@baliphy@sta/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   67 |     s<<__DATE__<<" "<<__TIME__;
      |        ^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   67 |     s<<__DATE__<<" "<<__TIME__;
      |                       ^~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from /usr/include/nlohmann/json.hpp:37,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/version.H:24,
                 from ../src/version.cc:20:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/version.H:24,
                 from ../src/version.cc:20:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/version.H:24,
                 from ../src/version.cc:20:
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json version_info()’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[153/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -MF 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[154/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -c ../src/bali-phy/help.cc
[155/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' -c ../src/bali-phy/link-partitions.cc
[156/292] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' 'src/25a6634@@baliphy@sta/dp_2way.cc.o' 'src/25a6634@@baliphy@sta/dp_3way.cc.o' 'src/25a6634@@baliphy@sta/dp_5way.cc.o' 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' 'src/25a6634@@baliphy@sta/math_exponential.cc.o' 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' 'src/25a6634@@baliphy@sta/math_pow2.cc.o' 'src/25a6634@@baliphy@sta/models_parameters.cc.o' 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' 'src/25a6634@@baliphy@sta/models_setup.cc.o' 'src/25a6634@@baliphy@sta/models_rules.cc.o' 'src/25a6634@@baliphy@sta/models_parse.cc.o' 'src/25a6634@@baliphy@sta/models_translate.cc.o' 'src/25a6634@@baliphy@sta/models_unification.cc.o' 'src/25a6634@@baliphy@sta/models_model.cc.o' 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' 'src/25a6634@@baliphy@sta/probability_choose.cc.o' 'src/25a6634@@baliphy@sta/probability_probability.cc.o' 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' 'src/25a6634@@baliphy@sta/version.cc.o'
[157/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy/bali-phy.cc
../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’:
../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
  122 |   system(cmd.str().c_str());
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/system/error_code.hpp:23,
                 from /usr/include/boost/chrono/detail/system.hpp:11,
                 from /usr/include/boost/chrono/system_clocks.hpp:64,
                 from /usr/include/boost/chrono/chrono.hpp:13,
                 from /usr/include/boost/chrono/include.hpp:15,
                 from /usr/include/boost/chrono.hpp:17,
                 from ../src/util/include/util/time.H:41,
                 from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
                 from ../src/bali-phy/bali-phy.cc:43:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from ../src/bali-phy/bali-phy.cc:43:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[158/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -c ../src/bali-phy/files.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/system/error_code.hpp:23,
                 from /usr/include/boost/filesystem/path_traits.hpp:23,
                 from /usr/include/boost/filesystem/path.hpp:25,
                 from /usr/include/boost/filesystem/operations.hpp:25,
                 from ../src/bali-phy/files.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[159/292] c++ -Isrc/builtins/2382537@@Array@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Array@sha/Array.cc.o' -MF 'src/builtins/2382537@@Array@sha/Array.cc.o.d' -o 'src/builtins/2382537@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc
[160/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -c ../src/bali-phy/system.cc
[161/292] c++ -Isrc/builtins/2382537@@Data@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Data@sha/Data.cc.o' -MF 'src/builtins/2382537@@Data@sha/Data.cc.o.d' -o 'src/builtins/2382537@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/Data.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[162/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -c ../src/bali-phy/A-T-model.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/bali-phy/A-T-model.H:8,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2187 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/boost/program_options/errors.hpp:15,
                 from /usr/include/boost/program_options/options_description.hpp:12,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../src/bali-phy/A-T-model.H:8,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::update(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::const_reference) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/A-T-model.H:4,
                 from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘owned_ptr<Model> create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr<module_loader>&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[163/292] c++  -o src/builtins/Array.so 'src/builtins/2382537@@Array@sha/Array.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[164/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -c ../src/bali-phy/paths.cc
[165/292] c++  -o src/builtins/Data.so 'src/builtins/2382537@@Data@sha/Data.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[166/292] c++ -Isrc/builtins/2382537@@Prelude@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc
[167/292] c++  -o src/builtins/Prelude.so 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[168/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -c ../src/bali-phy/loggers.cc
In file included from /usr/include/c++/9/set:60,
                 from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2187 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/loggers.H:4,
                 from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
                 from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/bali-phy/loggers.H:4,
                 from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from ../src/mcmc/mcmc.H:36,
                 from ../src/bali-phy/loggers.H:7,
                 from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/stl_map.h: In function ‘void add_value(nlohmann::json&, const K&, const json&) [with K = std::__cxx11::basic_string<char>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘void add_children(nlohmann::json&, const K&, const json&) [with K = std::__cxx11::basic_string<char>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[169/292] c++ -Isrc/builtins/2382537@@Pair@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -MF 'src/builtins/2382537@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc
[170/292] c++ -Isrc/builtins/2382537@@Alphabet@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[171/292] c++  -o src/builtins/Pair.so 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[172/292] c++  -o src/builtins/Alphabet.so 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[173/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I../ -Isrc -I../src -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -c ../src/bali-phy/cmd_line.cc
[174/292] c++  -o src/bali-phy/bali-phy 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -ldl -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[175/292] c++ -Isrc/builtins/2382537@@Modifiables@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Modifiables.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref maybe_modifiable_structure(reg_heap&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[176/292] c++  -o src/builtins/Modifiables.so 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[177/292] c++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Range@sha/Range.cc.o' -MF 'src/builtins/2382537@@Range@sha/Range.cc.o.d' -o 'src/builtins/2382537@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc
[178/292] c++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_phase2_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[179/292] c++  -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[180/292] c++  -o src/builtins/Range.so 'src/builtins/2382537@@Range@sha/Range.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[181/292] c++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/Distribution.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[182/292] c++  -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[183/292] c++ -Isrc/builtins/2382537@@Alignment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Alignment.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_select_range(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sequence_names(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sequences_from_alignment(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_leaf_sequence_counts(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[184/292] c++  -o src/builtins/Alignment.so 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[185/292] c++ -Isrc/builtins/2382537@@Vector@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -MF 'src/builtins/2382537@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/Vector.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/builtins/Vector.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_list_to_vector(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[186/292] c++  -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[187/292] c++ -Isrc/builtins/2382537@@MCMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc
[188/292] c++  -o src/builtins/MCMC.so 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[189/292] c++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/SModel.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/SModel.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_modulated_markov_smap(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[190/292] c++  -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[191/292] c++ -Isrc/builtins/2382537@@Real@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Real@sha/Real.cc.o' -MF 'src/builtins/2382537@@Real@sha/Real.cc.o.d' -o 'src/builtins/2382537@@Real@sha/Real.cc.o' -c ../src/builtins/Real.cc
[192/292] c++  -o src/builtins/Real.so 'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[193/292] c++ -Isrc/builtins/2382537@@Environment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -MF 'src/builtins/2382537@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Environment.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[194/292] c++  -o src/builtins/Environment.so 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[195/292] c++ -Isrc/builtins/2382537@@Text@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Text@sha/Text.cc.o' -MF 'src/builtins/2382537@@Text@sha/Text.cc.o.d' -o 'src/builtins/2382537@@Text@sha/Text.cc.o' -c ../src/builtins/Text.cc
[196/292] c++ -Isrc/builtins/2382537@@Bits@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -MF 'src/builtins/2382537@@Bits@sha/Bits.cc.o.d' -o 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -c ../src/builtins/Bits.cc
[197/292] c++  -o src/builtins/Bits.so 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[198/292] c++ -Isrc/builtins/2382537@@Foreign@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -MF 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o.d' -o 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -c ../src/builtins/Foreign.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Foreign.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/builtins/Foreign.cc:8:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
                 from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
                 from /usr/include/nlohmann/adl_serializer.hpp:5,
                 from /usr/include/nlohmann/json.hpp:51,
                 from ../src/util/include/util/json.hh:3,
                 from ../src/builtins/Foreign.cc:8:
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json c_json(const expression_ref&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
                 from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
                 from /usr/include/boost/intrusive_ptr.hpp:16,
                 from ../src/computation/object.H:6,
                 from ../src/computation/machine/args.H:5,
                 from ../src/builtins/Foreign.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[199/292] c++  -o src/builtins/Foreign.so 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[200/292] c++  -o src/builtins/Text.so 'src/builtins/2382537@@Text@sha/Text.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[201/292] c++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/model_P.cc:21:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/model_P.cc:21:
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[202/292] c++  -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[203/292] c++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -Isrc/builtins/../.. -I../src/builtins/../.. -I. -I../ -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/builtins/SMC.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > compress_states(const std::vector<int>&, const std::vector<double>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > smc_trace(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_smc_trace(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘log_double_t smc(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_smc_density(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[204/292] c++  -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[205/292] c++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc
[206/292] c++  -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[207/292] c++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  721 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
                 from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/stl_vector.h: In function ‘var_stats show_stats(boost::program_options::variables_map&, const std::vector<Table<double> >&, int, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
 1662 |    _M_range_insert(__pos, __first, __last,
      |    ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from /usr/include/c++/9/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[208/292] c++  -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[209/292] c++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc
[210/292] c++  -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[211/292] c++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc
[212/292] c++  -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[213/292] c++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc
[214/292] c++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc
[215/292] c++  -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[216/292] c++  -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[217/292] c++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc
[218/292] c++  -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[219/292] c++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc
[220/292] c++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc
[221/292] c++  -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[222/292] c++  -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[223/292] c++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc
[224/292] c++  -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[225/292] c++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc
[226/292] c++  -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[227/292] c++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc
[228/292] c++  -o src/alignment-cat 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[229/292] c++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1820 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
                 from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  326 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1671 |       std::__make_heap(__first, __middle, __comp);
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
                 from /usr/include/c++/9/functional:62,
                 from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
                 from /usr/include/c++/9/algorithm:71,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[230/292] c++  -o src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[231/292] c++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc
[232/292] c++  -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[233/292] c++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc
[234/292] c++  -o src/trees-to-SRQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[235/292] c++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc
[236/292] c++  -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[237/292] c++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc
[238/292] c++  -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[239/292] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc
[240/292] c++ -Isrc/25a6634@@cut-range@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc
[241/292] c++  -o src/cut-range 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[242/292] c++ -Isrc/25a6634@@alignment-thin@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc
[243/292] c++  -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[244/292] c++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc
[245/292] c++  -o src/alignments-diff 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[246/292] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc
[247/292] c++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc
[248/292] c++  -o src/tree-tool 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[249/292] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md
[250/292] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md
[251/292] c++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc
[252/292] c++  -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[253/292] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tree/tree.H:31,
                 from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<T> convertTo(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
[254/292] c++  -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[255/292] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc
In file included from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
                 from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[256/292] c++  -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[257/292] c++ -Isrc/25a6634@@extract-ancestors@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -MF 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o.d' -o 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -c ../src/tools/extract-ancestors.cc
[258/292] c++  -o src/extract-ancestors 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[259/292] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md
[260/292] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md
[261/292] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md
[262/292] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md
[263/292] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md
[264/292] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md
[265/292] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md
[266/292] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md
[267/292] c++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc
[268/292] c++  -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[269/292] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md
[270/292] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md
[271/292] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md
[272/292] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md
[273/292] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md
[274/292] c++ -Isrc/25a6634@@summarize-ancestors@exe -Isrc -I../src -I. -I../ -I../src/util/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -MF 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o.d' -o 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -c ../src/tools/summarize-ancestors.cc
[275/292] c++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I../ -I../src/util/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc
In file included from /usr/include/c++/9/vector:72,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/9/bits/stl_vector.h: In function ‘MC_tree_with_lengths get_MC_tree_with_lengths(const string&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
[276/292] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md
[277/292] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md
[278/292] c++  -o src/summarize-ancestors 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[279/292] c++  -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[280/292] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/pickout.md
[281/292] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/cut-range.md
[282/292] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md
[283/292] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md
[284/292] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md
[285/292] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md
[286/292] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md
[287/292] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md
[288/292] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md
[289/292] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md
[290/292] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md
[291/292] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md
[292/292] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md
   dh_auto_test -a -O--buildsystem=meson
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[1/5] Generating git-version.h with a custom command.
[1/2] Running all tests.
 1/36 bali-phy version                        OK       0.05 s 
 2/36 bali-phy help                           OK       0.05 s 
 3/36 bali-phy 5d test                        OK       8.98 s 
 4/36 bali-phy 5d +A 50                       OK      22.92 s 
 5/36 bali-phy 48 +A 3                        OK      32.92 s 
 6/36 bali-phy 5d -A 200                      OK      17.17 s 
 7/36 model_P --help                          OK       0.02 s 
 8/36 statreport --help                       OK       0.01 s 
 9/36 stats-select --help                     OK       0.01 s 
10/36 alignment-gild --help                   OK       0.01 s 
11/36 alignment-consensus --help              OK       0.01 s 
12/36 alignment-max --help                    OK       0.01 s 
13/36 alignment-chop-internal --help          OK       0.01 s 
14/36 alignment-indices --help                OK       0.01 s 
15/36 alignment-info --help                   OK       0.01 s 
16/36 alignment-cat --help                    OK       0.01 s 
17/36 alignment-translate --help              OK       0.01 s 
18/36 alignment-find --help                   OK       0.01 s 
19/36 trees-consensus --help                  OK       0.01 s 
20/36 tree-mean-lengths --help                OK       0.01 s 
21/36 mctree-mean-lengths --help              OK       0.01 s 
22/36 trees-to-SRQ --help                     OK       0.01 s 
23/36 pickout --help                          OK       0.01 s 
24/36 cut-range --help                        OK       0.01 s 
25/36 trees-distances --help                  OK       0.01 s 
26/36 alignment-thin --help                   OK       0.01 s 
27/36 alignments-diff --help                  OK       0.01 s 
28/36 tree-tool --help                        OK       0.01 s 
29/36 alignment-distances --help              OK       0.01 s 
30/36 alignment-draw --help                   OK       0.01 s 
31/36 trees-bootstrap --help                  OK       0.01 s 
32/36 draw-tree --help                        OK       0.02 s 
33/36 extract-ancestors --help                OK       0.01 s 
34/36 summarize-ancestors --help              OK       0.01 s 
35/36 subsample --help                        OK       0.01 s 
36/36 bali-phy testsuite                      OK      688.69 s 

Ok:                   36
Expected Fail:         0
Fail:                  0
Unexpected Pass:       0
Skipped:               0
Timeout:               0

Full log written to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=meson
   dh_testroot -a -O--buildsystem=meson
   dh_prep -a -O--buildsystem=meson
   dh_auto_install -a -O--buildsystem=meson
	cd obj-arm-linux-gnueabihf && DESTDIR=/<<BUILDDIR>>/bali-phy-3.5.0.1\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/5] Generating git-version.h with a custom command.
[1/2] Installing files.
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/IModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/MCMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Parameters.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/PopGen.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Prelude.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Range.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/BAliPhy/ATModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alphabet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Sequence.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment/Pairwise.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Base.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Enum.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/IO.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Num.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Real.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/ST.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Control/Monad.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Array.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/BitVector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Bool.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Either.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Eq.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Function.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Ix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/JSON.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Map.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Maybe.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Ord.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/ReadFile.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Set.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Text.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Tuple.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Introspection.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Pair.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/String.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Vector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Random.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Beta.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Binomial.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Categorical.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Cauchy.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Discrete.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Exponential.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/FakeDist.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Gamma.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Geometric.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Laplace.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Mixture.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Normal.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Poisson.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Uniform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Codons.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Doublets.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Frequency.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Likelihood.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Nucleotides.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/ReversibleMarkov.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/System/Environment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/bernoulli.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/beta.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/binomial.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/cauchy.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/dirichlet.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/dirichlet_on.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/geometric.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/iid.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/poisson.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/shifted_exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/shifted_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/uniform_int.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/add.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/codons.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/cos.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/div.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/dna.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/exp.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getAlphabet.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getAminoAcids.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getNucleotides.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/intToDouble.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/length.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/letter_pairs.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/letters.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/log.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/map.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/mul.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/num_branches.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/quantile.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/replicate.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/rna.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sin.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sqrt.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/standard_code.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sub.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/take.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/tan.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/uniform_discretize.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/unit_mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/zip.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/zipWith.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Cons.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Nil.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Pair.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/branch_site.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/dNdS.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/density.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/empirical.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/equ.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f1x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f3x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f61.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f81.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fMutSel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fMutSel0.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fe.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/get_q.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gtr.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gtr_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gwF.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gy94.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gy94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/hky85.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/hky85_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/inv.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/jc69.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/jtt.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/k80.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/lg08.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/lg08_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m1a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m2a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m2a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m3_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m7.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94k.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/multiMixtureModel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/multi_rate.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mut_sel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mut_sel_aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/pam.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rna_16a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs05.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs07.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs07_relaxed_rates.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/sample.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/tn93.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/tn93_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/wag.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/wag_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/galtier01.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/huelsenbeck02.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/ts98.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/wang07.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Frequencies/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/free.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/parameters.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Codons.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Doublets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Triplets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/genetic-code.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/Rao-Blackwellize.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/align.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/alphabet.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/branch-lengths.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/disable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/enable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/imodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/iterations.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/link.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/model.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/name.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/package-path.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/pre-burnin.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/print.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/scale.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/seed.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/set.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/smodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/subsample.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/test.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/tree.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/unalign.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/verbose.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/version.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/parameters/priors.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo6.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo5.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo4.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo3.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo2.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo1.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Coalmine.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Airline.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/10-globins.xml to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/bglobin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/many.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/some.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/5.8S.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/README.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/cleaned.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/config2.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/orig.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/orig.nex to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/keep.pl to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.aln to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/additional.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/other.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/paper.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/table1.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing src/bali-phy/bali-phy to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/builtins/Array.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Data.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Prelude.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alphabet.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Pair.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Modifiables.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alignment.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/PopGen.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Distribution.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Range.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SModel.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/MCMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Vector.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Environment.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Real.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Bits.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Foreign.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Text.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/model_P to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/statreport to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/stats-select to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-gild to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-max to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-chop-internal to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-indices to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-info to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-cat to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-translate to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-find to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/tree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/mctree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-to-SRQ to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/pickout to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/cut-range to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-distances to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-thin to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignments-diff to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/tree-tool to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-distances to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-draw to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-bootstrap to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/draw-tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/extract-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/summarize-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/bali-subsample to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing doc/bali-phy.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/model_P.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/statreport.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/stats-select.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-gild.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-max.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-chop-internal.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-indices.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-info.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-cat.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-translate.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-find.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/mctree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-to-SRQ.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/pickout.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/cut-range.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-thin.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignments-diff.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-tool.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-draw.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-bootstrap.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/draw-tree.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/extract-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/summarize-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-subsample.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bp-analyze.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-phy-pkg.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/bp-analyze to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/bali-phy-pkg to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/compare-runs.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/compare-runs2.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot1.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot2.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot3.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot2-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot1-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot3-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
   dh_installdocs -a -O--buildsystem=meson
   dh_installchangelogs -a -O--buildsystem=meson
   dh_installman -a -O--buildsystem=meson
   dh_installinit -a -O--buildsystem=meson
   dh_installsystemduser -a -O--buildsystem=meson
   dh_lintian -a -O--buildsystem=meson
   dh_perl -a -O--buildsystem=meson
   dh_link -a -O--buildsystem=meson
   dh_strip_nondeterminism -a -O--buildsystem=meson
   dh_compress -a -O--buildsystem=meson
   dh_fixperms -a -O--buildsystem=meson
   dh_missing -a -O--buildsystem=meson
   dh_dwz -a -O--buildsystem=meson
dwz: debian/bali-phy/usr/bin/alignment-cat: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-chop-internal: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-draw: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-find: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-gild: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-indices: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-info: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-max: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-thin: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-translate: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignments-diff: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-phy: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-subsample: .debug_info section not present
dwz: debian/bali-phy/usr/bin/cut-range: .debug_info section not present
dwz: debian/bali-phy/usr/bin/draw-tree: .debug_info section not present
dwz: debian/bali-phy/usr/bin/extract-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/mctree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/model_P: .debug_info section not present
dwz: debian/bali-phy/usr/bin/pickout: .debug_info section not present
dwz: debian/bali-phy/usr/bin/statreport: .debug_info section not present
dwz: debian/bali-phy/usr/bin/stats-select: .debug_info section not present
dwz: debian/bali-phy/usr/bin/summarize-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-tool: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-bootstrap: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-to-SRQ: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alignment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alphabet.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Array.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Bits.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Data.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Distribution.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Environment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Foreign.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/MCMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Modifiables.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Pair.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/PopGen.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Prelude.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Range.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Real.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SModel.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Text.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Vector.so: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
   dh_strip -a -O--buildsystem=meson
   dh_makeshlibs -a -O--buildsystem=meson
   dh_shlibdeps -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTV11constructor: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z13geometric_pdf12log_double_tS_i: it's probably a plugin
dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZN9alignment4loadERKSt6vectorI8sequenceSaIS1_EE: it's probably a plugin
dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZNK7EVectorcvSt6vectorIdSaIdEEEv: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 38 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/summarize-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _Z13is_bool_falseRK14expression_ref: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZTI8alphabet: it's probably a plugin
dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution20peel_internal_branchEPK23Likelihood_Cache_BranchS2_RK20pairwise_alignment_tS5_RK7EVectorRKN8bali_phy6matrixIdEE: it's probably a plugin
dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZTV11constructor: it's probably a plugin
dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all)
   dh_installdeb -a -O--buildsystem=meson
   dh_gencontrol -a -O--buildsystem=meson
   dh_md5sums -a -O--buildsystem=meson
   dh_builddeb -a -O--buildsystem=meson
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.5.0.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.5.0.1+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bali-phy_3.5.0.1+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-24T17:46:25Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


bali-phy_3.5.0.1+dfsg-1_armhf.changes:
--------------------------------------

Format: 1.8
Date: Thu, 05 Mar 2020 17:36:36 -0500
Source: bali-phy
Binary: bali-phy bali-phy-dbgsym
Architecture: armhf
Version: 3.5.0.1+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Benjamin Redelings <benjamin.redelings@gmail.com>
Description:
 bali-phy   - Bayesian Inference of Alignment and Phylogeny
Closes: 951991
Changes:
 bali-phy (3.5.0.1+dfsg-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * d/u/metadata: yamllint
 .
   [ Benjamin Redelings ]
   * Update copyright.
   * New upstream version 3.5.0.1+dfsg
     Closes: #951991
   * Require meson >= 0.52
   * Depend on librange-v3-dev
   * Update standards version.
   * Add --buildtype=release to debian/rules
   * Depend on python3
 .
   [ Andreas Tille ]
   * debhelper-compat 12 (routine-update)
   * Add salsa-ci file (routine-update)
   * Set field Upstream-Contact in debian/copyright.
   * Set upstream metadata fields: Bug-Database, Bug-Submit.
   * Remove obsolete fields Contact, Name from debian/upstream/metadata
     (already present in machine-readable debian/copyright).
   * Add lintian override for spelling issue
Checksums-Sha1:
 829f53c8db11f0b9be7f27659cc4bbee032f3c2f 667736 bali-phy-dbgsym_3.5.0.1+dfsg-1_armhf.deb
 efdf3d70101fb021c79815cc3d3db23098512ce4 7964 bali-phy_3.5.0.1+dfsg-1_armhf.buildinfo
 213e18226a31147488dcef8f53d20a89cb008765 4239180 bali-phy_3.5.0.1+dfsg-1_armhf.deb
Checksums-Sha256:
 2ed50f19235a5187ef215e818509d58951c489ce89d9243139340ee81447ba32 667736 bali-phy-dbgsym_3.5.0.1+dfsg-1_armhf.deb
 c5376c35076dd6f400648cc97dd5fcda42288d1621b7bdd556ab88f9ff0a43b1 7964 bali-phy_3.5.0.1+dfsg-1_armhf.buildinfo
 589e87dcd4522ab9ad077c46cf1416f1bb975aeab2b73739789f57be756ec70b 4239180 bali-phy_3.5.0.1+dfsg-1_armhf.deb
Files:
 1efe7cc53a7c63451f02b2b5e657a62b 667736 debug optional bali-phy-dbgsym_3.5.0.1+dfsg-1_armhf.deb
 350efe69623cd1e9ae53b74a058ec83c 7964 science optional bali-phy_3.5.0.1+dfsg-1_armhf.buildinfo
 794a3a49038877cf0add4a2fda09ad9a 4239180 science optional bali-phy_3.5.0.1+dfsg-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


bali-phy-dbgsym_3.5.0.1+dfsg-1_armhf.deb
----------------------------------------

 new Debian package, version 2.0.
 size 667736 bytes: control archive=2768 bytes.
    2357 bytes,    12 lines      control              
    5194 bytes,    49 lines      md5sums              
 Package: bali-phy-dbgsym
 Source: bali-phy
 Version: 3.5.0.1+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 6824
 Depends: bali-phy (= 3.5.0.1+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for bali-phy
 Build-Ids: 066f843f98c123125696ab09287d38445f216615 107f893d548242dd89564816ebb96a96485e5884 117ce62f0052a88f0c125f1aabec719e0c477396 1a41c289ae5897f548ce65765ca0e90d2074ea0b 21369176ebca124bc43252561c3c4f1d557736d4 2a869db7be115958cac21d4012780beb0b86a7b3 2d095c83e3e77a04a53e8e26bbfbe970d728e239 3355c6ddf154604d3a68a5e5b679acec43234db6 38688560f980878aec59270af3e85cab938848ee 39107f2bcb296f059550e14260f544acd579f2d9 3c6423bcacb9b67838e51e1ef7b1d92bf51af75e 3e886ef72305103d8ad053a6d7fe335516f7b1ef 4f7831296d04f6d00768bff5ab26ce4100cf3f39 52559f5ab656350c5ea6f49c275ee0ce61eb9a66 545b1fd0b2dc1862143b928c6e452a9cbc2bae5d 585a12cf1c7173c1010ae5e281934bf678995202 590d0290b9003f3c2e3935e5ce2ec7595e219199 64a0fcb54e9f9cef9c6d07839a3e451c4fb7eb68 6b78a14be562a595e8b878ff8f9dc8e61111c8ab 6e1fdc13ea96d4694264244bee571c79d2b7f510 6f030e9ab35b5219fd15626aeb8b207dd8fe6a1e 76ea5c69c196d21e5cc652c390ee6e1f55c34a4c 7ab513bdfa0e5f68374db71c927ce4e704fde35d 8729d959a18770e7b7c15cee1717ac7fa57f3c4c 88bdfda86c2142c58dfafc9d761d618fcf48e587 8b1d3a02c4dca5c44436c61235807190b15892b3 8cd071af94808e0051aa7b245bba5e2dc302ee61 908b2fe2a1a43f16a9d450394fc171e5ee1f4562 91ea6368aa1d443c5e953c5c14f698b54273eae6 9b3fb5aa78310f4fb84addb71fd8e54a1d617a8e a53f6ecba2107b216c0a5aab2357330237f7bf2d afcff2f7c7943e51fc05eb059d31501e5a0b7973 b3161129dd21a84eac850cf78b51ee18afc04e54 b59ee5e0e1416ccd3aedd48406464876700ad578 bab809316e3d3d447f386e32bb63fcf2b9bd7768 bbe159776d4375737dc4936c7800f0058c534f9c bd4c0357c51105efab4c26f464bd30383af8dcf3 c2d35bb6ebb63fb58e517e7fe678ca5b95aeae7f d3024a7c5015d2a8343492a6e0b68f3af51308a1 d9bf1573f83c6711bf8c719c4c48e58cdd23cd39 ddbf3ae82eff5fe78f09814b74be7bd5720f754b e5f8d4010629b9e69ee882a4cc0f3ed745d7a1f2 e9212ac891da6770ebad41fb782f3489c77fd390 e96f0f35e98b9c1c05b09dbb54b19706ff37ba2d ee93823e3a03c8f7f201bcb0bd1d9cecd4c08f2a f83ec44ff66fe6cdbf4531f53131d5521d4fb7d8 f9bab4819d6542cd2ad375f4bbbe7618b4be5787 fc8f17196330f52eabe811ba482449a954efcb9c fee9fb4edd529179ccf4fd287ee12d637b7cd295

drwxr-xr-x root/root         0 2020-03-05 22:36 ./
drwxr-xr-x root/root         0 2020-03-05 22:36 ./usr/
drwxr-xr-x root/root         0 2020-03-05 22:36 ./usr/lib/
drwxr-xr-x root/root         0 2020-03-05 22:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-03-05 22:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-03-05 22:36 ./usr/lib/debug/.build-id/06/
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lrwxrwxrwx root/root         0 2020-03-05 22:36 ./usr/share/doc/bali-phy-dbgsym -> bali-phy


bali-phy_3.5.0.1+dfsg-1_armhf.deb
---------------------------------

 new Debian package, version 2.0.
 size 4239180 bytes: control archive=13092 bytes.
    1142 bytes,    21 lines      control              
   42250 bytes,   493 lines      md5sums              
 Package: bali-phy
 Version: 3.5.0.1+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 28234
 Depends: libboost-chrono1.67.0, libboost-filesystem1.67.0, libboost-program-options1.67.0, libboost-random1.67.0, libboost-system1.67.0, libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.5), libstdc++6 (>= 9), perl:any, python3
 Recommends: r-base, gnuplot
 Suggests: figtree, seaview
 Section: science
 Priority: optional
 Homepage: http://www.bali-phy.org
 Description: Bayesian Inference of Alignment and Phylogeny
  BAli-Phy estimates multiple sequence alignments and evolutionary trees
  from unaligned DNA, amino acid, or codon sequences.  BAli-Phy uses MCMC
  to estimate evolutionary trees, positive selection, and branch lengths
  while averaging over alternative alignments. BAli-Phy can display
  alignment ambiguity graphically in an alignment uncertainty (AU) plot.
  .
  BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
  and BEAST) using substitution models like GTR+gamma.  BAli-Phy automatically
  estimates relative rates for each gene.

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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 247308
Build-Time: 1354
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 728
Job: bali-phy_3.5.0.1+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 2101
Source-Version: 3.5.0.1+dfsg-1
Space: 247308
Status: successful
Version: 3.5.0.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-03-24T17:46:25Z
Build needed 00:35:01, 247308k disk space
Raspbian Package Auto-Building

Build log for bali-phy (3.5.0.1+dfsg-1) on armhf
