bali-phy →
3.5.0.1+dfsg-1+b1 →
armhf → 2020-06-10 11:39:30
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| bali-phy 3.5.0.1+dfsg-1+b1 (armhf) Wed, 10 Jun 2020 10:02:27 +0000 |
+==============================================================================+
Package: bali-phy
Version: 3.5.0.1+dfsg-1+b1
Source Version: 3.5.0.1+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-96d6ede9-6370-499a-b8b5-00c3b133b3fe' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 24s (1014 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1106 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (dsc) [2241 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (tar) [1100 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bali-phy 3.5.0.1+dfsg-1 (diff) [4312 B]
Fetched 1106 kB in 0s (5915 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-5rZQFh/bali-phy-3.5.0.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-5rZQFh' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-RNT9FV/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-RNT9FV/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-RNT9FV/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2692 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (13.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12274 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
Filtered Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-RNT9FV/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Sources [586 B]
Get:5 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ Packages [671 B]
Fetched 2590 B in 1s (3175 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblkid-dev libblkid1 libboost-chrono-dev
libboost-chrono1.71-dev libboost-chrono1.71.0 libboost-dev
libboost-filesystem-dev libboost-filesystem1.71-dev
libboost-filesystem1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-random-dev libboost-random1.71-dev libboost-random1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost1.71-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2
libcairo2 libcairo2-dev libcroco3 libdebhelper-perl libeigen3-dev libelf1
libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl
libfontconfig-dev libfontconfig1 libfontconfig1-dev libfreetype-dev
libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2
libmagic-mgc libmagic1 libmount-dev libmount1 libmpdec2 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev
libpng-dev libpng16-16 libpthread-stubs0-dev libpython3-stdlib
libpython3.8-minimal libpython3.8-stdlib librange-v3-dev libselinux1-dev
libsepol1-dev libsigsegv2 libsm-dev libsm6 libssl1.1 libsub-override-perl
libtinfo5 libtool libuchardet0 libuuid1 libx11-6 libx11-data libx11-dev
libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxrender-dev libxrender1 m4 man-db meson mime-support
ninja-build nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf
python3 python3-distutils python3-lib2to3 python3-minimal python3.8
python3.8-minimal sensible-utils ucf uuid-dev x11-common x11proto-core-dev
x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost-doc libboost1.71-doc libboost-atomic1.71-dev
libboost-container1.71-dev libboost-context1.71-dev
libboost-contract1.71-dev libboost-coroutine1.71-dev
libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-graph1.71-dev libboost-graph-parallel1.71-dev
libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev
libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev
libboost-numpy1.71-dev libboost-python1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev
libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev
libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc freetype2-doc
libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils libice-doc libsm-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc
m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex
texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf
librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex
libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv
python3.8-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
libpng-tools librange-v3-doc libltdl-dev uuid-runtime libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblkid-dev libboost-chrono-dev libboost-chrono1.71-dev
libboost-chrono1.71.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.71-dev libboost-filesystem1.71.0
libboost-program-options-dev libboost-program-options1.71-dev
libboost-program-options1.71.0 libboost-random-dev libboost-random1.71-dev
libboost-random1.71.0 libboost-system-dev libboost-system1.71-dev
libboost-system1.71.0 libboost1.71-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3
libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev
libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1
libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2 libmagic-mgc
libmagic1 libmount-dev libmpdec2 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpng16-16
libpthread-stubs0-dev libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librange-v3-dev libselinux1-dev libsepol1-dev
libsigsegv2 libsm-dev libsm6 libssl1.1 libsub-override-perl libtinfo5
libtool libuchardet0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1
libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2
libxrender-dev libxrender1 m4 man-db meson mime-support ninja-build
nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.8
python3.8-minimal sbuild-build-depends-bali-phy-dummy sensible-utils ucf
uuid-dev x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
libblkid1 libmount1 libuuid1
3 upgraded, 140 newly installed, 0 to remove and 34 not upgraded.
Need to get 75.4 MB of archives.
After this operation, 471 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-RNT9FV/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.2-1 [1269 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3-1 [751 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3-1 [1629 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuuid1 armhf 2.35.2-2 [80.2 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3-1 [1600 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3-1 [416 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libblkid1 armhf 2.35.2-2 [180 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmount1 armhf 2.35.2-2 [190 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0042 [73.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-1 [1159 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-2 [8286 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.35.2-2 [95.4 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.35.2-2 [210 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.71.0 armhf 1.71.0-6+b1 [239 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.71-dev armhf 1.71.0-6+b1 [247 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono-dev armhf 1.71.0.3+b1 [5024 B]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b1 [4620 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71.0 armhf 1.71.0-6+b1 [260 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71.0 armhf 1.71.0-6+b1 [231 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71-dev armhf 1.71.0-6+b1 [232 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71-dev armhf 1.71.0-6+b1 [270 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.71.0.3+b1 [4436 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71.0 armhf 1.71.0-6+b1 [341 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71-dev armhf 1.71.0-6+b1 [396 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.71.0.3+b1 [4412 B]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.71.0 armhf 1.71.0-6+b1 [237 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.71-dev armhf 1.71.0-6+b1 [241 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libboost-random-dev armhf 1.71.0.3+b1 [4400 B]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.71.0.3+b1 [4540 B]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.1-2 [482 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.1-2 [63.8 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig-dev armhf 2.13.1-4.2 [347 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-4.2 [238 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2020.1-1 [3404 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.14-2 [173 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.9-2 [766 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.14-2 [114 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.14-2 [103 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.3-4 [57.9 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.64.3-1 [1152 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.64.3-1 [128 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.3-2 [76.8 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.3-2 [143 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.64.3-1 [169 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 3.0-1 [306 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 3.0-1+b1 [158 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.35.2-2 [211 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.64.3-1 [1448 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-2 [850 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf librange-v3-dev all 0.10.0-1 [219 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf ninja-build armhf 1.10.0-1 [90.4 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf meson all 0.54.2-1+rpi1 [400 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf nlohmann-json3-dev all 3.7.3-1 [751 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf pandoc-data all 2.5-3 [349 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf pandoc armhf 2.5-3+b1 [18.6 MB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libboost-system-dev:armhf (1.71.0.3+b1) ...
Setting up libx11-dev:armhf (2:1.6.9-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libboost-random-dev:armhf (1.71.0.3+b1) ...
Setting up meson (0.54.2-1+rpi1) ...
Setting up man-db (2.9.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libfreetype-dev:armhf (2.10.1-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxcb-shm0-dev:armhf (1.14-2) ...
Setting up libglib2.0-dev:armhf (2.64.3-1) ...
Setting up libxcb-render0-dev:armhf (1.14-2) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libfreetype6-dev:armhf (2.10.1-2) ...
Setting up libcairo-gobject2:armhf (1.16.0-4) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-4) ...
Setting up libfontconfig-dev:armhf (2.13.1-4.2) ...
Setting up libcairo2-dev:armhf (1.16.0-4) ...
Setting up libfontconfig1-dev:armhf (2.13.1-4.2) ...
Setting up debhelper (13.1) ...
Setting up sbuild-build-depends-bali-phy-dummy (0.invalid.0) ...
Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-12+rpi1 gcc-9_9.3.0-12+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-12+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-12+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1 gcc-8-base_8.4.0-3+rpi1 gcc-9_9.3.0-12+rpi1 gcc-9-base_9.3.0-12+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.4 libarchive-zip-perl_1.68-1 libasan5_9.3.0-12+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid-dev_2.35.2-2 libblkid1_2.35.2-2 libboost-chrono-dev_1.71.0.3+b1 libboost-chrono1.71-dev_1.71.0-6+b1 libboost-chrono1.71.0_1.71.0-6+b1 libboost-dev_1.71.0.3+b1 libboost-filesystem-dev_1.71.0.3+b1 libboost-filesystem1.71-dev_1.71.0-6+b1 libboost-filesystem1.71.0_1.71.0-6+b1 libboost-program-options-dev_1.71.0.3+b1 libboost-program-options1.71-dev_1.71.0-6+b1 libboost-program-options1.71.0_1.71.0-6+b1 libboost-random-dev_1.71.0.3+b1 libboost-random1.71-dev_1.71.0-6+b1 libboost-random1.71.0_1.71.0-6+b1 libboost-system-dev_1.71.0.3+b1 libboost-system1.71-dev_1.71.0-6+b1 libboost-system1.71.0_1.71.0-6+b1 libboost1.71-dev_1.71.0-6+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.34-2 libcap2-bin_1:2.34-2 libcc1-0_10.1.0-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdpkg-perl_1.19.7 libeigen3-dev_3.3.7-2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi-dev_3.3-4 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libfontconfig-dev_2.13.1-4.2 libfontconfig1_2.13.1-4.2 libfontconfig1-dev_2.13.1-4.2 libfreetype-dev_2.10.1-2 libfreetype6_2.10.1-2 libfreetype6-dev_2.10.1-2 libgcc-9-dev_9.3.0-12+rpi1 libgcc-s1_10.1.0-1+rpi1 libgcc1_1:10.1.0-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libglib2.0-bin_2.64.3-1 libglib2.0-data_2.64.3-1 libglib2.0-dev_2.64.3-1 libglib2.0-dev-bin_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 liblzo2-2_2.10-2 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount-dev_2.35.2-2 libmount1_2.35.2-2 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.34-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-12 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 librange-v3-dev_0.10.0-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libselinux1-dev_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsepol1-dev_3.0-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.7-1 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.2-2 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libx11-dev_2:1.6.9-2 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-render0-dev_1.14-2 libxcb-shm0_1.14-2 libxcb-shm0-dev_1.14-2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-5+b1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.2-1 mawk_1.3.4.20200120-2 meson_0.54.2-1+rpi1 mime-support_3.64 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 ninja-build_1.10.0-1 nlohmann-json3-dev_3.7.3-1 pandoc_2.5-3+b1 pandoc-data_2.5-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 python3_3.8.2-3 python3-distutils_3.8.3-2 python3-lib2to3_3.8.3-2 python3-minimal_3.8.2-3 python3.8_3.8.3-1 python3.8-minimal_3.8.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 util-linux_2.35.1-5 uuid-dev_2.35.2-2 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Mar 6 10:05:00 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.5.0.1+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg
dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.5.0.1+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-96d6ede9-6370-499a-b8b5-00c3b133b3fe
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.5.0.1+dfsg-1+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_autoreconf_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules build-arch
dh build-arch --buildsystem=meson
dh_update_autotools_config -a -O--buildsystem=meson
dh_autoreconf -a -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg'
dh_auto_configure -- -Dextra-tools=false --buildtype=release
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf -Dextra-tools=false --buildtype=release
The Meson build system
Version: 0.54.2
Source dir: /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Project version: 3.5
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C compiler for the host machine: cc (gcc 9.3.0 "cc (Raspbian 9.3.0-12+rpi1) 9.3.0")
C linker for the host machine: cc ld.bfd 2.34
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C++ compiler for the host machine: c++ (gcc 9.3.0 "c++ (Raspbian 9.3.0-12+rpi1) 9.3.0")
C++ linker for the host machine: c++ ld.bfd 2.34
Host machine cpu family: arm
Host machine cpu: armv7l
Has header "sys/resource.h" : YES
Has header "fenv.h" : YES
Checking for function "log2" : YES
Checking for function "feenableexcept" : YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-sign-compare -Wsign-compare: YES
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES
Compiler for C++ supports arguments -Woverloaded-virtual: YES
Compiler for C++ supports arguments -Wstrict-aliasing: YES
Compiler for C++ supports arguments -Wno-unknown-pragmas -Wunknown-pragmas: YES
Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES
Compiler for C++ supports arguments -funroll-loops: YES
Compiler for C++ supports arguments -fno-math-errno: YES
Compiler for C++ supports arguments -fno-signed-zeros: YES
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency cairo found: YES 1.16.0
Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.71.0 (/usr)
Run-time dependency eigen3 found: YES 3.3.7
Has header "nlohmann/json.hpp" : YES
Library dl found: YES
Has header "range/v3/view/take.hpp" : YES
Library m found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/tests/run-tests.py found: YES (/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/tests/run-tests.py)
Build targets in project: 86
Found ninja-1.10.0 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg'
dh_auto_build -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/292] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_pred.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -c ../src/util/string/pred.cc
[3/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -c ../src/util/string/sanitize.cc
[4/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/myexception.cc.o' -MF 'src/util/ed6d25d@@util@sta/myexception.cc.o.d' -o 'src/util/ed6d25d@@util@sta/myexception.cc.o' -c ../src/util/myexception.cc
[5/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_strip.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -c ../src/util/string/strip.cc
[6/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/log-level.cc.o' -MF 'src/util/ed6d25d@@util@sta/log-level.cc.o.d' -o 'src/util/ed6d25d@@util@sta/log-level.cc.o' -c ../src/util/log-level.cc
[7/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/range.cc.o' -MF 'src/util/ed6d25d@@util@sta/range.cc.o.d' -o 'src/util/ed6d25d@@util@sta/range.cc.o' -c ../src/util/range.cc
[8/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/demangle.cc.o' -MF 'src/util/ed6d25d@@util@sta/demangle.cc.o.d' -o 'src/util/ed6d25d@@util@sta/demangle.cc.o' -c ../src/util/demangle.cc
[9/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/mapping.cc.o' -MF 'src/util/ed6d25d@@util@sta/mapping.cc.o.d' -o 'src/util/ed6d25d@@util@sta/mapping.cc.o' -c ../src/util/mapping.cc
[10/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/text.cc.o' -MF 'src/util/ed6d25d@@util@sta/text.cc.o.d' -o 'src/util/ed6d25d@@util@sta/text.cc.o' -c ../src/util/text.cc
[11/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/io.cc.o' -MF 'src/util/ed6d25d@@util@sta/io.cc.o.d' -o 'src/util/ed6d25d@@util@sta/io.cc.o' -c ../src/util/io.cc
[12/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/rng.cc.o' -MF 'src/util/ed6d25d@@util@sta/rng.cc.o.d' -o 'src/util/ed6d25d@@util@sta/rng.cc.o' -c ../src/util/rng.cc
../src/util/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/util/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
42 | s <<= bits_per_read;
| ^~~~~~~~~~~~~
[13/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/permute.cc.o' -MF 'src/util/ed6d25d@@util@sta/permute.cc.o.d' -o 'src/util/ed6d25d@@util@sta/permute.cc.o' -c ../src/util/permute.cc
[14/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -MF 'src/util/ed6d25d@@util@sta/file-paths.cc.o.d' -o 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -c ../src/util/file-paths.cc
[15/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -MF 'src/util/ed6d25d@@util@sta/cmdline.cc.o.d' -o 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -c ../src/util/cmdline.cc
[16/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/time.cc.o' -MF 'src/util/ed6d25d@@util@sta/time.cc.o.d' -o 'src/util/ed6d25d@@util@sta/time.cc.o' -c ../src/util/time.cc
[17/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_split.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_split.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_split.cc.o' -c ../src/util/string/split.cc
[18/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -MF 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o.d' -o 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -c ../src/tree/newick-tokenizer.cc
[19/292] c++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/ptree.cc.o' -MF 'src/util/ed6d25d@@util@sta/ptree.cc.o.d' -o 'src/util/ed6d25d@@util@sta/ptree.cc.o' -c ../src/util/ptree.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[20/292] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a 'src/util/ed6d25d@@util@sta/string_pred.cc.o' 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' 'src/util/ed6d25d@@util@sta/string_strip.cc.o' 'src/util/ed6d25d@@util@sta/string_split.cc.o' 'src/util/ed6d25d@@util@sta/log-level.cc.o' 'src/util/ed6d25d@@util@sta/io.cc.o' 'src/util/ed6d25d@@util@sta/range.cc.o' 'src/util/ed6d25d@@util@sta/demangle.cc.o' 'src/util/ed6d25d@@util@sta/mapping.cc.o' 'src/util/ed6d25d@@util@sta/cmdline.cc.o' 'src/util/ed6d25d@@util@sta/rng.cc.o' 'src/util/ed6d25d@@util@sta/permute.cc.o' 'src/util/ed6d25d@@util@sta/file-paths.cc.o' 'src/util/ed6d25d@@util@sta/ptree.cc.o' 'src/util/ed6d25d@@util@sta/text.cc.o' 'src/util/ed6d25d@@util@sta/myexception.cc.o' 'src/util/ed6d25d@@util@sta/time.cc.o'
[21/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_sequencetree.cc.o' -MF 'src/25a6634@@common@sta/tree_sequencetree.cc.o.d' -o 'src/25a6634@@common@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[22/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_randomtree.cc.o' -MF 'src/25a6634@@common@sta/tree_randomtree.cc.o.d' -o 'src/25a6634@@common@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[23/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_tree-util.cc.o' -MF 'src/25a6634@@common@sta/tree_tree-util.cc.o.d' -o 'src/25a6634@@common@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[24/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' -MF 'src/25a6634@@common@sta/tree-align_n_indels.cc.o.d' -o 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' -c ../src/tree-align/n_indels.cc
[25/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_tree.cc.o' -MF 'src/25a6634@@common@sta/tree_tree.cc.o.d' -o 'src/25a6634@@common@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[26/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/sequence_sequence.cc.o' -MF 'src/25a6634@@common@sta/sequence_sequence.cc.o.d' -o 'src/25a6634@@common@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[27/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/program.cc.o' -MF 'src/computation/973f3a2@@computation@sta/program.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/program.cc.o' -c ../src/computation/program.cc
../src/computation/program.cc: In member function ‘void Program::check_dependencies()’:
../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable]
155 | int index = find_module(name);
| ^~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[28/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' -MF 'src/25a6634@@common@sta/sequence_sequence-format.cc.o.d' -o 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[29/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/sequence_alphabet.cc.o' -MF 'src/25a6634@@common@sta/sequence_alphabet.cc.o.d' -o 'src/25a6634@@common@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[30/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_read-trees.cc.o' -MF 'src/25a6634@@common@sta/tools_read-trees.cc.o.d' -o 'src/25a6634@@common@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[31/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/alignment_load.cc.o' -MF 'src/25a6634@@common@sta/alignment_load.cc.o.d' -o 'src/25a6634@@common@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[32/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment-random.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[33/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment-util.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[34/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/alignment_alignment.cc.o' -MF 'src/25a6634@@common@sta/alignment_alignment.cc.o.d' -o 'src/25a6634@@common@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[35/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree-align_link.cc.o' -MF 'src/25a6634@@common@sta/tree-align_link.cc.o.d' -o 'src/25a6634@@common@sta/tree-align_link.cc.o' -c ../src/tree-align/link.cc
[36/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_statistics.cc.o' -MF 'src/25a6634@@common@sta/tools_statistics.cc.o.d' -o 'src/25a6634@@common@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[37/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/models_path.cc.o' -MF 'src/25a6634@@common@sta/models_path.cc.o.d' -o 'src/25a6634@@common@sta/models_path.cc.o' -c ../src/models/path.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/path.H:5,
from ../src/models/path.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void add_path(ptree&, const std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[38/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' -MF 'src/25a6634@@common@sta/alignment_index-matrix.cc.o.d' -o 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[39/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_parsimony.cc.o' -MF 'src/25a6634@@common@sta/tools_parsimony.cc.o.d' -o 'src/25a6634@@common@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[40/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_partition.cc.o' -MF 'src/25a6634@@common@sta/tools_partition.cc.o.d' -o 'src/25a6634@@common@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[41/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_tree-dist.cc.o' -MF 'src/25a6634@@common@sta/tools_tree-dist.cc.o.d' -o 'src/25a6634@@common@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[42/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_findroot.cc.o' -MF 'src/25a6634@@common@sta/tools_findroot.cc.o.d' -o 'src/25a6634@@common@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[43/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_optimize.cc.o' -MF 'src/25a6634@@common@sta/tools_optimize.cc.o.d' -o 'src/25a6634@@common@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[44/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_mctree.cc.o' -MF 'src/25a6634@@common@sta/tools_mctree.cc.o.d' -o 'src/25a6634@@common@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[45/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_distance-report.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-report.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[46/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_inverse.cc.o' -MF 'src/25a6634@@common@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@common@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[47/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_stats-table.cc.o' -MF 'src/25a6634@@common@sta/tools_stats-table.cc.o.d' -o 'src/25a6634@@common@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
In file included from /usr/include/c++/9/map:60,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > parameter_values_children(const json&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[48/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -MF 'src/25a6634@@common@sta/tools_joint-A-T.cc.o.d' -o 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[49/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-methods.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[50/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/object.cc.o' -MF 'src/computation/973f3a2@@computation@sta/object.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/object.cc.o' -c ../src/computation/object.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string Box<T>::print() const [with T = bali_phy::matrix<double>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[51/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/closure.cc.o' -MF 'src/computation/973f3a2@@computation@sta/closure.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/closure.cc.o' -c ../src/computation/closure.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/closure.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[52/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -MF 'src/computation/973f3a2@@computation@sta/preprocess.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[53/292] c++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@common@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[54/292] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' 'src/25a6634@@common@sta/tree_sequencetree.cc.o' 'src/25a6634@@common@sta/tree_tree.cc.o' 'src/25a6634@@common@sta/tree_tree-util.cc.o' 'src/25a6634@@common@sta/tree_randomtree.cc.o' 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' 'src/25a6634@@common@sta/sequence_alphabet.cc.o' 'src/25a6634@@common@sta/sequence_sequence.cc.o' 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' 'src/25a6634@@common@sta/tools_read-trees.cc.o' 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' 'src/25a6634@@common@sta/alignment_load.cc.o' 'src/25a6634@@common@sta/alignment_alignment.cc.o' 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' 'src/25a6634@@common@sta/tree-align_link.cc.o' 'src/25a6634@@common@sta/models_path.cc.o' 'src/25a6634@@common@sta/tools_statistics.cc.o' 'src/25a6634@@common@sta/tools_partition.cc.o' 'src/25a6634@@common@sta/tools_tree-dist.cc.o' 'src/25a6634@@common@sta/tools_parsimony.cc.o' 'src/25a6634@@common@sta/tools_mctree.cc.o' 'src/25a6634@@common@sta/tools_stats-table.cc.o' 'src/25a6634@@common@sta/tools_findroot.cc.o' 'src/25a6634@@common@sta/tools_optimize.cc.o' 'src/25a6634@@common@sta/tools_distance-report.cc.o' 'src/25a6634@@common@sta/tools_inverse.cc.o' 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' 'src/25a6634@@common@sta/tools_distance-methods.cc.o' 'src/25a6634@@common@sta/tools_consensus-tree.cc.o'
[55/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/param.cc.o' -MF 'src/computation/973f3a2@@computation@sta/param.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/param.cc.o' -c ../src/computation/param.cc
[56/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/context.cc.o' -MF 'src/computation/973f3a2@@computation@sta/context.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/context.cc.o' -c ../src/computation/context.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/closure.H:4,
from ../src/computation/context.H:4,
from ../src/computation/context.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void context_ref::run_transition_kernels()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
[57/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/loader.cc.o' -MF 'src/computation/973f3a2@@computation@sta/loader.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/loader.cc.o' -c ../src/computation/loader.cc
[58/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/operations.cc.o' -MF 'src/computation/973f3a2@@computation@sta/operations.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/operations.cc.o' -c ../src/computation/operations.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/operations.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[59/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/module.cc.o' -MF 'src/computation/973f3a2@@computation@sta/module.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/module.cc.o' -c ../src/computation/module.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::string&, std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from ../src/computation/module.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, symbol_info>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/c++/9/regex:52,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = symbol_info; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::load_constructors()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/c++/9/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[60/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' -c ../src/computation/parser/desugar.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<expression_ref> desugar_state::parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[61/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' -c ../src/computation/parser/driver.cc
[62/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' -c ../src/computation/expression/operator.cc
[63/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' -c ../src/computation/parser/rename.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/deque:69,
from ../src/computation/parser/rename.cc:5:
/usr/include/c++/9/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/deque.tcc:766:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
766 | deque<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/deque.tcc:766:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/deque.tcc:593:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
593 | deque<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/deque.tcc:593:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/deque.tcc:633:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
633 | _M_insert_aux(__pos, __first, __last, __n);
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/deque:67,
from ../src/computation/parser/rename.cc:5:
/usr/include/c++/9/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_deque.h:2056:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
2056 | _M_range_insert_aux(__pos, __first, __last,
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref rename_infix_top(const Module&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘bound_var_info renamer_state::rename_rec_stmt(expression_ref&, const bound_var_info&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[64/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[65/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' -c ../src/computation/parser/desugar-case.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector<equation_info_t>&, const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[66/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/math_pow2.cc.o' -MF 'src/25a6634@@baliphy@sta/math_pow2.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_pow2.cc.o' -c ../src/math/pow2.cc
[67/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' -c ../src/computation/parser/lexer.cc
[68/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' -MF 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' -c ../src/computation/parser/parser.cc
In file included from /usr/include/c++/9/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
622 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/9/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<expression_ref> make_String_vec(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator<yy::parser::stack_symbol_type>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_module(const string&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref type_apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, std::optional<int>&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:40:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
parser.y: In member function ‘virtual int yy::parser::parse()’:
parser.y:890:56: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:979:56: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1135:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1136:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1137:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1138:46: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
[69/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[70/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' -MF 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[71/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[72/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[73/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[74/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:299:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
299 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
| ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[75/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[76/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<var>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[77/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_case.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[78/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<var, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<var>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<var> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[79/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_let.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[80/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[81/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[82/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_list.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::optional<EVector> list_to_evector(const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[83/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_var.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' -c ../src/computation/expression/var.cc
[84/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[85/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' -c ../src/computation/expression/random_variable.cc
[86/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' -c ../src/computation/expression/modifiable.cc
[87/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' -c ../src/computation/expression/reg_var.cc
[88/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' -c ../src/computation/expression/bool.cc
[89/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' -c ../src/computation/expression/resolved_symbol.cc
[90/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' -c ../src/computation/expression/maybe.cc
[91/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_args.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' -c ../src/computation/machine/args.cc
[92/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' -MF 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' -c ../src/computation/expression/do_block.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::empty_stmt()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::perform(const expression_ref&, const expression_ref&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::let(const Binds&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘expression_ref do_block::bind_and_log_model(const string&, const expression_ref&, std::vector<expression_ref>&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘do_block& do_block::rec(const do_block&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[93/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[94/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[95/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[96/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/9/set:60,
from ../src/computation/program.H:4,
from ../src/computation/machine/graph_register.H:11,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from ../src/computation/program.H:7,
from ../src/computation/machine/graph_register.H:11,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/9/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[97/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc
[98/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' -c ../src/computation/machine/gc.cc
[99/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc
[100/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' -MF 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' -c ../src/computation/machine/effects.cc
[101/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[102/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' -c ../src/computation/optimization/free-vars.cc
[103/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' -c ../src/computation/optimization/float-out.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/computation/optimization/float-out.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void float_binds_t::append_top(CDecls&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void float_out_from_module(std::vector<std::vector<std::pair<var, expression_ref> > >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[104/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[105/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[106/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' -c ../src/computation/optimization/set-levels.cc
[107/292] c++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[108/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[109/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[110/292] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a 'src/computation/973f3a2@@computation@sta/object.cc.o' 'src/computation/973f3a2@@computation@sta/closure.cc.o' 'src/computation/973f3a2@@computation@sta/program.cc.o' 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' 'src/computation/973f3a2@@computation@sta/module.cc.o' 'src/computation/973f3a2@@computation@sta/loader.cc.o' 'src/computation/973f3a2@@computation@sta/context.cc.o' 'src/computation/973f3a2@@computation@sta/operations.cc.o' 'src/computation/973f3a2@@computation@sta/param.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o'
[111/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_3way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -c ../src/dp/3way.cc
[112/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[113/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_2way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_2way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_2way.cc.o' -c ../src/dp/2way.cc
[114/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_5way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -c ../src/dp/5way.cc
[115/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[116/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[117/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[118/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[119/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy/bali-phy.cc
../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’:
../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
122 | system(cmd.str().c_str());
| ~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from ../src/util/include/util/time.H:41,
from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:959,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from ../src/util/include/util/time.H:41,
from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:959,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from ../src/util/include/util/time.H:41,
from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[120/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[121/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[122/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[123/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[124/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[125/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
[126/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[127/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
[128/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
[129/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[130/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc
[131/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/math_exponential.cc.o' -MF 'src/25a6634@@baliphy@sta/math_exponential.cc.o.d' -o 'src/25a6634@@baliphy@sta/math_exponential.cc.o' -c ../src/math/exponential.cc
[132/292] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md
[133/292] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md
[134/292] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md
[135/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' -MF 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o.d' -o 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[136/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' -MF 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o.d' -o 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/path.H:5,
from ../src/mcmc/setup.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void do_sampling(const boost::program_options::variables_map&, owned_ptr<Model>&, long int, std::ostream&, const std::vector<std::function<void(const Model&, long int)> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[137/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' -MF 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o.d' -o 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[138/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' -MF 'src/25a6634@@baliphy@sta/models_site-compression.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' -c ../src/models/site-compression.cc
[139/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' -MF 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/tree/tree.H:31,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[140/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_rules.cc.o' -MF 'src/25a6634@@baliphy@sta/models_rules.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_rules.cc.o' -c ../src/models/rules.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from ../src/models/rules.cc:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../src/models/rules.H:5,
from ../src/models/rules.cc:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../src/models/rules.H:5,
from ../src/models/rules.cc:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[141/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_setup.cc.o' -MF 'src/25a6634@@baliphy@sta/models_setup.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::tuple<expression_ref, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, bool> get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:80:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/9/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[142/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_parse.cc.o' -MF 'src/25a6634@@baliphy@sta/models_parse.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_parse.cc.o' -c ../src/models/parse.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/parse.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/models/parse.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[143/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_translate.cc.o' -MF 'src/25a6634@@baliphy@sta/models_translate.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_translate.cc.o' -c ../src/models/translate.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set<std::__cxx11::basic_string<char> >, const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[144/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_unification.cc.o' -MF 'src/25a6634@@baliphy@sta/models_unification.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_unification.cc.o' -c ../src/models/unification.cc
In file included from /usr/include/c++/9/set:60,
from ../src/models/unification.H:4,
from ../src/models/unification.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ptree>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ptree>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ptree> >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[145/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/probability_choose.cc.o' -MF 'src/25a6634@@baliphy@sta/probability_choose.cc.o.d' -o 'src/25a6634@@baliphy@sta/probability_choose.cc.o' -c ../src/probability/choose.cc
[146/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' -MF 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' -c ../src/tree-align/link2.cc
[147/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_parameters.cc.o' -MF 'src/25a6634@@baliphy@sta/models_parameters.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const TreeInterface&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const Tree&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref tree_expression(const SequenceTree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<param, param, param>}; _Tp = std::tuple<param, param, param>; _Alloc = std::allocator<std::tuple<param, param, param> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::tuple<param, param, param> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<param>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘tree_constants::tree_constants(context*, const std::vector<std::__cxx11::basic_string<char> >&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<param> get_params_from_array(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<param> get_params_from_list(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Parameters*, int&, const alphabet&, const int&}; _Tp = data_partition_constants; _Alloc = std::allocator<data_partition_constants>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<data_partition_constants>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor ‘Parameters::Parameters(const Program&, const key_map_t&, const std::vector<alignment>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const SequenceTree&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<int>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::string generate_atmodel_program(int, const std::vector<expression_ref>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const model_t&, const std::vector<int>&, bool)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[148/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/models_model.cc.o' -MF 'src/25a6634@@baliphy@sta/models_model.cc.o.d' -o 'src/25a6634@@baliphy@sta/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from ../src/models/model.cc:23:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/set:60,
from ../src/models/model.cc:20:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json flatten_me(const json&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from ../src/models/model.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../src/models/model.cc:21:
/usr/include/c++/9/bits/stl_map.h: In function ‘Model::key_map_t parse_key_map(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[149/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -MF 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o.d' -o 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/models/model.H:34,
from ../src/imodel/imodel.H:29,
from ../src/imodel/imodel.cc:27:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[150/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' -MF 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o.d' -o 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[151/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' -MF 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o.d' -o 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[152/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -MF 'src/25a6634@@baliphy@sta/probability_probability.cc.o.d' -o 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -c ../src/probability/probability.cc
[153/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' -MF 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' -c ../src/tree-align/n_indels2.cc
[154/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/version.cc.o' -MF 'src/25a6634@@baliphy@sta/version.cc.o.d' -o 'src/25a6634@@baliphy@sta/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from /usr/include/nlohmann/json.hpp:37,
from ../src/util/include/util/json.hh:3,
from ../src/version.H:24,
from ../src/version.cc:20:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/version.H:24,
from ../src/version.cc:20:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/version.H:24,
from ../src/version.cc:20:
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json version_info()’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[155/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -c ../src/bali-phy/system.cc
[156/292] c++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -MF 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[157/292] c++ -Isrc/builtins/2382537@@Array@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Array@sha/Array.cc.o' -MF 'src/builtins/2382537@@Array@sha/Array.cc.o.d' -o 'src/builtins/2382537@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc
[158/292] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' 'src/25a6634@@baliphy@sta/dp_2way.cc.o' 'src/25a6634@@baliphy@sta/dp_3way.cc.o' 'src/25a6634@@baliphy@sta/dp_5way.cc.o' 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' 'src/25a6634@@baliphy@sta/math_exponential.cc.o' 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' 'src/25a6634@@baliphy@sta/math_pow2.cc.o' 'src/25a6634@@baliphy@sta/models_parameters.cc.o' 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' 'src/25a6634@@baliphy@sta/models_setup.cc.o' 'src/25a6634@@baliphy@sta/models_rules.cc.o' 'src/25a6634@@baliphy@sta/models_parse.cc.o' 'src/25a6634@@baliphy@sta/models_translate.cc.o' 'src/25a6634@@baliphy@sta/models_unification.cc.o' 'src/25a6634@@baliphy@sta/models_model.cc.o' 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' 'src/25a6634@@baliphy@sta/probability_choose.cc.o' 'src/25a6634@@baliphy@sta/probability_probability.cc.o' 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' 'src/25a6634@@baliphy@sta/version.cc.o'
[159/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' -c ../src/bali-phy/link-partitions.cc
[160/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -c ../src/bali-phy/files.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/filesystem/path_traits.hpp:22,
from /usr/include/boost/filesystem/path.hpp:26,
from /usr/include/boost/filesystem/operations.hpp:25,
from ../src/bali-phy/files.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[161/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -c ../src/bali-phy/loggers.cc
In file included from /usr/include/c++/9/set:60,
from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/loggers.H:4,
from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/loggers.H:4,
from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../src/mcmc/mcmc.H:36,
from ../src/bali-phy/loggers.H:7,
from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/9/bits/stl_map.h: In function ‘void add_value(nlohmann::json&, const K&, const json&) [with K = std::__cxx11::basic_string<char>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘void add_children(nlohmann::json&, const K&, const json&) [with K = std::__cxx11::basic_string<char>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[162/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -c ../src/bali-phy/help.cc
[163/292] c++ -Isrc/builtins/2382537@@Data@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Data@sha/Data.cc.o' -MF 'src/builtins/2382537@@Data@sha/Data.cc.o.d' -o 'src/builtins/2382537@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/Data.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[164/292] c++ -o src/builtins/Array.so 'src/builtins/2382537@@Array@sha/Array.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[165/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -c ../src/bali-phy/paths.cc
[166/292] c++ -o src/builtins/Data.so 'src/builtins/2382537@@Data@sha/Data.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[167/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -c ../src/bali-phy/cmd_line.cc
[168/292] c++ -Isrc/builtins/2382537@@Pair@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -MF 'src/builtins/2382537@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc
[169/292] c++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -c ../src/bali-phy/A-T-model.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/bali-phy/A-T-model.H:8,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/bali-phy/A-T-model.H:8,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::update(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::const_reference) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘owned_ptr<Model> create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr<module_loader>&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[170/292] c++ -o src/bali-phy/bali-phy 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[171/292] c++ -o src/builtins/Pair.so 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[172/292] c++ -Isrc/builtins/2382537@@Prelude@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc
[173/292] c++ -o src/builtins/Prelude.so 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[174/292] c++ -Isrc/builtins/2382537@@Alphabet@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[175/292] c++ -o src/builtins/Alphabet.so 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[176/292] c++ -Isrc/builtins/2382537@@Modifiables@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Modifiables.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘expression_ref maybe_modifiable_structure(reg_heap&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[177/292] c++ -o src/builtins/Modifiables.so 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[178/292] c++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Range@sha/Range.cc.o' -MF 'src/builtins/2382537@@Range@sha/Range.cc.o.d' -o 'src/builtins/2382537@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc
[179/292] c++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[180/292] c++ -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[181/292] c++ -o src/builtins/Range.so 'src/builtins/2382537@@Range@sha/Range.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[182/292] c++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_read_phase2_file(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[183/292] c++ -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[184/292] c++ -Isrc/builtins/2382537@@Alignment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alignment.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_select_range(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sequence_names(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_sequences_from_alignment(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_leaf_sequence_counts(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[185/292] c++ -o src/builtins/Alignment.so 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[186/292] c++ -Isrc/builtins/2382537@@Environment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -MF 'src/builtins/2382537@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Environment.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[187/292] c++ -Isrc/builtins/2382537@@MCMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc
[188/292] c++ -o src/builtins/MCMC.so 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[189/292] c++ -o src/builtins/Environment.so 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[190/292] c++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_modulated_markov_smap(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[191/292] c++ -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[192/292] c++ -Isrc/builtins/2382537@@Vector@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -MF 'src/builtins/2382537@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/9/bits/stl_vector.h: In function ‘closure builtin_function_list_to_vector(OperationArgs&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[193/292] c++ -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[194/292] c++ -Isrc/builtins/2382537@@Real@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Real@sha/Real.cc.o' -MF 'src/builtins/2382537@@Real@sha/Real.cc.o.d' -o 'src/builtins/2382537@@Real@sha/Real.cc.o' -c ../src/builtins/Real.cc
[195/292] c++ -o src/builtins/Real.so 'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[196/292] c++ -Isrc/builtins/2382537@@Bits@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -MF 'src/builtins/2382537@@Bits@sha/Bits.cc.o.d' -o 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -c ../src/builtins/Bits.cc
[197/292] c++ -o src/builtins/Bits.so 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[198/292] c++ -Isrc/builtins/2382537@@Text@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Text@sha/Text.cc.o' -MF 'src/builtins/2382537@@Text@sha/Text.cc.o.d' -o 'src/builtins/2382537@@Text@sha/Text.cc.o' -c ../src/builtins/Text.cc
[199/292] c++ -o src/builtins/Text.so 'src/builtins/2382537@@Text@sha/Text.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[200/292] c++ -Isrc/builtins/2382537@@Foreign@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -MF 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o.d' -o 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -c ../src/builtins/Foreign.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Foreign.cc:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/builtins/Foreign.cc:8:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:8,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:51,
from ../src/util/include/util/json.hh:3,
from ../src/builtins/Foreign.cc:8:
/usr/include/c++/9/bits/stl_map.h: In function ‘nlohmann::json c_json(const expression_ref&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Foreign.cc:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[201/292] c++ -o src/builtins/Foreign.so 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[202/292] c++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/builtins/SMC.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > compress_states(const std::vector<int>&, const std::vector<double>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > smc_trace(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_smc_trace(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘log_double_t smc(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘closure builtin_function_smc_density(OperationArgs&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[203/292] c++ -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -Wl,--end-group
[204/292] c++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/model_P.cc:21:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/model_P.cc:21:
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[205/292] c++ -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[206/292] c++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/stl_vector.h: In function ‘var_stats show_stats(boost::program_options::variables_map&, const std::vector<Table<double> >&, int, const std::vector<std::vector<int> >&)’:
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/c++/9/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[207/292] c++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc
[208/292] c++ -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[209/292] c++ -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[210/292] c++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc
[211/292] c++ -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[212/292] c++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc
[213/292] c++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc
[214/292] c++ -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[215/292] c++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc
[216/292] c++ -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[217/292] c++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc
[218/292] c++ -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[219/292] c++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc
[220/292] c++ -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[221/292] c++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc
[222/292] c++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc
[223/292] c++ -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[224/292] c++ -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[225/292] c++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc
[226/292] c++ -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[227/292] c++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc
[228/292] c++ -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[229/292] c++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc
[230/292] c++ -o src/alignment-cat 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[231/292] c++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/functional:62,
from /usr/include/c++/9/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/9/algorithm:71,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/9/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[232/292] c++ -o src/trees-to-SRQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[233/292] c++ -o src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[234/292] c++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc
[235/292] c++ -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[236/292] c++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc
[237/292] c++ -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[238/292] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc
[239/292] c++ -Isrc/25a6634@@cut-range@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc
[240/292] c++ -o src/cut-range 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[241/292] c++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc
[242/292] c++ -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[243/292] c++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc
[244/292] c++ -o src/alignments-diff 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[245/292] c++ -Isrc/25a6634@@alignment-thin@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc
[246/292] c++ -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[247/292] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc
[248/292] c++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc
[249/292] c++ -o src/tree-tool 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[250/292] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/9/vector:72,
from ../src/tree/tree.H:31,
from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘std::vector<T> convertTo(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[251/292] c++ -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[252/292] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md
[253/292] c++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc
[254/292] c++ -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[255/292] c++ -Isrc/25a6634@@extract-ancestors@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -MF 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o.d' -o 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -c ../src/tools/extract-ancestors.cc
[256/292] c++ -o src/extract-ancestors 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[257/292] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc
In file included from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[258/292] c++ -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[259/292] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md
[260/292] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md
[261/292] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md
[262/292] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md
[263/292] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md
[264/292] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md
[265/292] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md
[266/292] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md
[267/292] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md
[268/292] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md
[269/292] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md
[270/292] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md
[271/292] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md
[272/292] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md
[273/292] c++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc
[274/292] c++ -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[275/292] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md
[276/292] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md
[277/292] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/pickout.md
[278/292] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/cut-range.md
[279/292] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md
[280/292] c++ -Isrc/25a6634@@summarize-ancestors@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -MF 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o.d' -o 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -c ../src/tools/summarize-ancestors.cc
[281/292] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md
[282/292] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md
[283/292] c++ -o src/summarize-ancestors 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
[284/292] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md
[285/292] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md
[286/292] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md
[287/292] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md
[288/292] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md
[289/292] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md
[290/292] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md
[291/292] c++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc
../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’:
../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable]
3351 | int right1 = MC1.mapping[b1];
| ^~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/9/bits/stl_vector.h: In function ‘MC_tree_with_lengths get_MC_tree_with_lengths(const string&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[292/292] c++ -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.71.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.71.0 -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src/util -Wl,-rpath-link,/<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/src
dh_auto_test -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[1/5] Generating git-version.h with a custom command
[1/2] Running all tests.
1/36 bali-phy version OK 0.13s
2/36 bali-phy help OK 0.10s
3/36 bali-phy 5d test OK 27.43s
4/36 bali-phy 5d +A 50 OK 87.32s
5/36 bali-phy 48 +A 3 OK 150.45s
6/36 bali-phy 5d -A 200 OK 77.86s
7/36 model_P --help OK 0.07s
8/36 statreport --help OK 0.06s
9/36 stats-select --help OK 0.06s
10/36 alignment-gild --help OK 0.06s
11/36 alignment-consensus --help OK 0.07s
12/36 alignment-max --help OK 0.06s
13/36 alignment-chop-internal --help OK 0.06s
14/36 alignment-indices --help OK 0.06s
15/36 alignment-info --help OK 0.06s
16/36 alignment-cat --help OK 0.06s
17/36 alignment-translate --help OK 0.06s
18/36 alignment-find --help OK 0.06s
19/36 trees-consensus --help OK 0.06s
20/36 tree-mean-lengths --help OK 0.06s
21/36 mctree-mean-lengths --help OK 0.06s
22/36 trees-to-SRQ --help OK 0.06s
23/36 pickout --help OK 0.06s
24/36 cut-range --help OK 0.06s
25/36 trees-distances --help OK 0.06s
26/36 alignment-thin --help OK 0.06s
27/36 alignments-diff --help OK 0.06s
28/36 tree-tool --help OK 0.07s
29/36 alignment-distances --help OK 0.06s
30/36 alignment-draw --help OK 0.07s
31/36 trees-bootstrap --help OK 0.07s
32/36 draw-tree --help OK 0.60s
33/36 extract-ancestors --help OK 0.06s
34/36 summarize-ancestors --help OK 0.06s
35/36 subsample --help OK 0.06s
36/36 bali-phy testsuite OK 1921.90s
Ok: 36
Expected Fail: 0
Fail: 0
Unexpected Pass: 0
Skipped: 0
Timeout: 0
Full log written to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=meson
dh_testroot -a -O--buildsystem=meson
dh_prep -a -O--buildsystem=meson
dh_auto_install -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && DESTDIR=/<<BUILDDIR>>/bali-phy-3.5.0.1\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/5] Generating git-version.h with a custom command
[1/2] Installing files.
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/IModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/MCMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Parameters.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/PopGen.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Prelude.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Range.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SMC.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/BAliPhy/ATModel.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alphabet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Sequence.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Bio/Alignment/Pairwise.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Base.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Enum.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/IO.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Num.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/Real.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Compiler/ST.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Control/Monad.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Array.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/BitVector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Bool.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Either.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Eq.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Function.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Ix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/JSON.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Map.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Matrix.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Maybe.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Ord.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/ReadFile.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Set.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Text.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Data/Tuple.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Introspection.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Pair.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/String.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Foreign/Vector.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Random.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Beta.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Binomial.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Categorical.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Cauchy.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Discrete.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Exponential.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/FakeDist.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Gamma.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Geometric.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Laplace.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/List.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Mixture.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Normal.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Poisson.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Tree.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/Probability/Distribution/Uniform.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Codons.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Doublets.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Frequency.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Likelihood.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/Nucleotides.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/SModel/ReversibleMarkov.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/haskell/System/Environment.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/bernoulli.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/beta.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/binomial.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/cauchy.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/dirichlet.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/dirichlet_on.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/geometric.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/iid.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_laplace.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/poisson.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/shifted_exponential.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/shifted_gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/distributions/uniform_int.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/add.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/codons.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/cos.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/div.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/dna.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/exp.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getAlphabet.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getAminoAcids.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/getNucleotides.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/intToDouble.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/length.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/letter_pairs.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/letters.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/log.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/map.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/mul.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/num_branches.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/quantile.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/replicate.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/rna.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sin.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sqrt.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/standard_code.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/sub.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/take.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/tan.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/uniform_discretize.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/unit_mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/zip.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/zipWith.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Cons.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Nil.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/functions/constructors/Pair.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/branch_site.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/dNdS.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/density.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/empirical.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/equ.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f1x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f3x4.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f61.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/f81.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fMutSel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fMutSel0.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/fe.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/get_q.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gtr.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gtr_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gwF.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gy94.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/gy94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/hky85.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/hky85_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/inv.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/jc69.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/jtt.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/k80.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/lg08.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/lg08_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m1a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m2a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m2a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m3_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m7.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/m8a_test.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94_ext.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mg94k.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mixture.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/multiMixtureModel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/multi_rate.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mut_sel.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/mut_sel_aa.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/pam.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rna_16a.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs05.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs07.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/rs07_relaxed_rates.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/sample.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/tn93.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/tn93_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/wag.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/wag_freq.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x2x2.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3_sym.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/x3x3.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/galtier01.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/huelsenbeck02.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/ts98.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Covarion/wang07.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Frequencies/uniform.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/free.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/gamma.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/bindings/models/Rates/log_normal.json to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/parameters.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Codons.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Doublets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/Triplets.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/alphabets/genetic-code.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/Rao-Blackwellize.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/align.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/alphabet.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/branch-lengths.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/disable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/enable.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/imodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/iterations.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/link.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/model.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/name.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/package-path.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/pre-burnin.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/print.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/scale.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/seed.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/set.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/smodel.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/subsample.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/test.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/tree.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/unalign.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/verbose.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/commands/version.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/help/parameters/priors.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters
Installing subdir /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo6.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo5.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo4.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo3.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo2.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Demo1.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Coalmine.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/models/Airline.hs to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/25.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/48.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/12d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/EF-Tu/5d.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/10-globins.xml to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/bglobin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/few.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/globins.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/many.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Globins/some.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/5.8S.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/README.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/cleaned.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/config.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/config2.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/orig.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/ferns/orig.nex to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/keep.pl to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.aln to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/30.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/37.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76.dnd to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/76.fasta to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/additional.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/other.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/paper.txt to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/examples/sequences/microbotryum/table1.accessions to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing src/bali-phy/bali-phy to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/builtins/Array.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Data.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Prelude.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alphabet.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Pair.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Modifiables.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alignment.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/PopGen.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Distribution.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Range.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SModel.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/MCMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Vector.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Environment.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SMC.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Real.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Bits.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Foreign.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Text.so to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/model_P to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/statreport to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/stats-select to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-gild to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-max to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-chop-internal to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-indices to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-info to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-cat to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-translate to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-find to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-consensus to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/tree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/mctree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-to-SRQ to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/pickout to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/cut-range to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-distances to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-thin to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignments-diff to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/tree-tool to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-distances to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-draw to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/trees-bootstrap to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/draw-tree to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/extract-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/summarize-ancestors to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing src/bali-subsample to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing doc/bali-phy.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/model_P.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/statreport.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/stats-select.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-gild.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-max.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-chop-internal.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-indices.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-info.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-cat.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-translate.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-find.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-consensus.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/mctree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-to-SRQ.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/pickout.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/cut-range.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-thin.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignments-diff.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-tool.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-distances.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-draw.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-bootstrap.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/draw-tree.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/extract-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/summarize-ancestors.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-subsample.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bp-analyze.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-phy-pkg.1 to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/share/man/man1
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/bp-analyze to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/bali-phy-pkg to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/compare-runs.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/compare-runs2.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot1.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot2.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot3.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot2-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot1-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/scripts/tree-plot3-3D.R to /<<BUILDDIR>>/bali-phy-3.5.0.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
dh_installdocs -a -O--buildsystem=meson
dh_installchangelogs -a -O--buildsystem=meson
dh_installman -a -O--buildsystem=meson
dh_installinit -a -O--buildsystem=meson
dh_installsystemduser -a -O--buildsystem=meson
dh_lintian -a -O--buildsystem=meson
dh_perl -a -O--buildsystem=meson
dh_link -a -O--buildsystem=meson
dh_strip_nondeterminism -a -O--buildsystem=meson
dh_compress -a -O--buildsystem=meson
dh_fixperms -a -O--buildsystem=meson
dh_missing -a -O--buildsystem=meson
dh_dwz -a -O--buildsystem=meson
dwz: debian/bali-phy/usr/bin/alignment-cat: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-chop-internal: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-draw: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-find: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-gild: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-indices: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-info: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-max: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-thin: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-translate: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignments-diff: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-phy: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-subsample: .debug_info section not present
dwz: debian/bali-phy/usr/bin/cut-range: .debug_info section not present
dwz: debian/bali-phy/usr/bin/draw-tree: .debug_info section not present
dwz: debian/bali-phy/usr/bin/extract-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/mctree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/model_P: .debug_info section not present
dwz: debian/bali-phy/usr/bin/pickout: .debug_info section not present
dwz: debian/bali-phy/usr/bin/statreport: .debug_info section not present
dwz: debian/bali-phy/usr/bin/stats-select: .debug_info section not present
dwz: debian/bali-phy/usr/bin/summarize-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-tool: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-bootstrap: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-to-SRQ: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alignment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alphabet.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Array.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Bits.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Data.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Distribution.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Environment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Foreign.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/MCMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Modifiables.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Pair.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/PopGen.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Prelude.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Range.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Real.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SModel.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Text.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Vector.so: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -a -O--buildsystem=meson
dh_makeshlibs -a -O--buildsystem=meson
dh_shlibdeps -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/summarize-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKSt16initializer_listIS_E: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN13OperationArgs20evaluate_slot_to_regEi: it's probably a plugin
dpkg-shlibdeps: warning: 38 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z7poissond: it's probably a plugin
dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _Z12is_bool_trueRK14expression_ref: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN16checked_ifstreamC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _Z13is_modifiableRK14expression_ref: it's probably a plugin
dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZN11constructorC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi: it's probably a plugin
dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z16show_stack_traceB5cxx11i: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN8alphabet20setup_letter_classesEv: it's probably a plugin
dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--buildsystem=meson
dh_gencontrol -a -O--buildsystem=meson
dh_md5sums -a -O--buildsystem=meson
dh_builddeb -a -O--buildsystem=meson
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.5.0.1+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.5.0.1+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bali-phy_3.5.0.1+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-06-10T11:39:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bali-phy_3.5.0.1+dfsg-1+b1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 05 Mar 2020 17:36:36 -0500
Source: bali-phy (3.5.0.1+dfsg-1)
Binary: bali-phy bali-phy-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.5.0.1+dfsg-1+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
bali-phy - Bayesian Inference of Alignment and Phylogeny
Changes:
bali-phy (3.5.0.1+dfsg-1+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild for boost 1.71
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Checksums-Sha256:
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Files:
32b85ac390577010d16fd82b73088df3 684564 debug optional bali-phy-dbgsym_3.5.0.1+dfsg-1+b1_armhf.deb
0aff1d4aeb173366a47a83192c062814 8274 science optional bali-phy_3.5.0.1+dfsg-1+b1_armhf.buildinfo
7882a4a9a9a1d8b25b951e9e9f675c1a 4257440 science optional bali-phy_3.5.0.1+dfsg-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bali-phy-dbgsym_3.5.0.1+dfsg-1+b1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 684564 bytes: control archive=2780 bytes.
2380 bytes, 12 lines control
5194 bytes, 49 lines md5sums
Package: bali-phy-dbgsym
Source: bali-phy (3.5.0.1+dfsg-1)
Version: 3.5.0.1+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7000
Depends: bali-phy (= 3.5.0.1+dfsg-1+b1)
Section: debug
Priority: optional
Description: debug symbols for bali-phy
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bali-phy_3.5.0.1+dfsg-1+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 4257440 bytes: control archive=13128 bytes.
1156 bytes, 22 lines control
42333 bytes, 494 lines md5sums
Package: bali-phy
Source: bali-phy (3.5.0.1+dfsg-1)
Version: 3.5.0.1+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 28291
Depends: libboost-chrono1.71.0, libboost-filesystem1.71.0, libboost-program-options1.71.0, libboost-random1.71.0, libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.5), libstdc++6 (>= 9), perl:any, python3
Recommends: r-base, gnuplot
Suggests: figtree, seaview
Section: science
Priority: optional
Homepage: http://www.bali-phy.org
Description: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
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-rw-r--r-- root/root 473 2020-03-05 22:36 ./usr/share/man/man1/pickout.1.gz
-rw-r--r-- root/root 847 2020-03-05 22:36 ./usr/share/man/man1/statreport.1.gz
-rw-r--r-- root/root 500 2020-03-05 22:36 ./usr/share/man/man1/stats-select.1.gz
-rw-r--r-- root/root 747 2020-03-05 22:36 ./usr/share/man/man1/summarize-ancestors.1.gz
-rw-r--r-- root/root 720 2020-03-05 22:36 ./usr/share/man/man1/tree-mean-lengths.1.gz
-rw-r--r-- root/root 629 2020-03-05 22:36 ./usr/share/man/man1/tree-tool.1.gz
-rw-r--r-- root/root 866 2020-03-05 22:36 ./usr/share/man/man1/trees-bootstrap.1.gz
-rw-r--r-- root/root 1132 2020-03-05 22:36 ./usr/share/man/man1/trees-consensus.1.gz
-rw-r--r-- root/root 897 2020-03-05 22:36 ./usr/share/man/man1/trees-distances.1.gz
-rw-r--r-- root/root 634 2020-03-05 22:36 ./usr/share/man/man1/trees-to-SRQ.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 248444
Build-Time: 4747
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1014
Job: bali-phy_3.5.0.1+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 5810
Source-Version: 3.5.0.1+dfsg-1
Space: 248444
Status: successful
Version: 3.5.0.1+dfsg-1+b1
--------------------------------------------------------------------------------
Finished at 2020-06-10T11:39:17Z
Build needed 01:36:50, 248444k disc space