bali-phy →
3.3+dfsg-1 →
armhf → 2018-08-09 06:35:22
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| bali-phy 3.3+dfsg-1 (armhf) Thu, 09 Aug 2018 05:21:40 +0000 |
+==============================================================================+
Package: bali-phy
Version: 3.3+dfsg-1
Source Version: 3.3+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-973026f5-cc64-4d4a-9b95-2a0011784690' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.6 MB in 29s (824 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1202 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bali-phy 3.3+dfsg-1 (dsc) [2185 B]
Get:2 http://172.17.0.1/private buster-staging/main bali-phy 3.3+dfsg-1 (tar) [1197 kB]
Get:3 http://172.17.0.1/private buster-staging/main bali-phy 3.3+dfsg-1 (diff) [3184 B]
Fetched 1202 kB in 1s (2137 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-x9vQf9/bali-phy-3.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-x9vQf9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-rZQajF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-rZQajF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-rZQajF/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3224 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 93 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (27.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15772 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
Filtered Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-rZQajF/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Sources [574 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ Packages [658 B]
Fetched 2565 B in 1s (3591 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev
libpng-dev libpng16-16 libpthread-stubs0-dev libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsm-dev libsm6
libtimedate-perl libtool libuuid1 libx11-6 libx11-data libx11-dev libxau-dev
libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev
libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2
libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson mime-support
ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf
python3 python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal ucf uuid-dev x11-common x11proto-core-dev x11proto-dev
x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-graph1.62-dev libboost-graph-parallel1.62-dev
libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-python1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev
libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev
libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc libmrpt-dev
libglib2.0-doc libice-doc libsm-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less
www-browser texlive-latex-recommended texlive-xetex texlive-luatex
pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc
nodejs php python ruby r-base-core libjs-mathjax node-katex libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
libpng-tools libltdl-dev uuid-runtime libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev
libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool
libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0
libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev
libxrender1 libyaml-0-2 m4 man-db meson mime-support ninja-build
nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal sbuild-build-depends-bali-phy-dummy ucf uuid-dev
x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
libpcre3 libpng16-16 libuuid1
3 upgraded, 126 newly installed, 0 to remove and 90 not upgraded.
Need to get 72.2 MB/75.0 MB of archives.
After this operation, 412 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rZQajF/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libpcre3 armhf 2:8.39-10 [313 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libuuid1 armhf 2.32-0.4 [76.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libpng16-16 armhf 1.6.34-2+rpi1 [270 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.4-1+rpi1 [836 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-8 [7003 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62.0 armhf 1.62.0+dfsg-8 [32.8 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62.0 armhf 1.62.0+dfsg-8 [36.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62-dev armhf 1.62.0+dfsg-8 [38.1 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libboost-chrono-dev armhf 1.62.0.1+b8 [4330 B]
Get:52 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:53 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62.0 armhf 1.62.0+dfsg-8 [58.7 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62-dev armhf 1.62.0+dfsg-8 [33.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62-dev armhf 1.62.0+dfsg-8 [66.9 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem-dev armhf 1.62.0.1+b8 [3732 B]
Get:57 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62.0 armhf 1.62.0+dfsg-8 [137 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62-dev armhf 1.62.0+dfsg-8 [180 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libboost-program-options-dev armhf 1.62.0.1+b8 [3716 B]
Get:60 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62.0 armhf 1.62.0+dfsg-8 [35.5 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62-dev armhf 1.62.0+dfsg-8 [35.4 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libboost-random-dev armhf 1.62.0.1+b8 [3706 B]
Get:63 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-2 [131 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-2 [107 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-2 [98.4 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libcairo-gobject2 armhf 1.15.10-3 [101 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.15.10-3 [129 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.4 [91.8 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.0-5 [922 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:81 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13-2 [168 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.5-1 [754 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:89 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.34.0-2 [469 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13-2 [110 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13-2 [99.6 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-10 [234 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-10 [226 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-10 [150 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-10 [561 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.15.10-3 [597 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.4-4 [841 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1 [83.3 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf ninja-build armhf 1.8.2-1 [78.8 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf meson all 0.47.1-2 [524 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf nlohmann-json-dev all 2.1.1-1.1 [395 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf pandoc-data all 2.2.1-2 [329 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf pandoc armhf 2.2.1-2 [17.3 MB]
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Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libboost-chrono-dev_1.62.0.1+b8 libboost-chrono1.62-dev_1.62.0+dfsg-8 libboost-chrono1.62.0_1.62.0+dfsg-8 libboost-dev_1.62.0.1+b8 libboost-filesystem-dev_1.62.0.1+b8 libboost-filesystem1.62-dev_1.62.0+dfsg-8 libboost-filesystem1.62.0_1.62.0+dfsg-8 libboost-program-options-dev_1.62.0.1+b8 libboost-program-options1.62-dev_1.62.0+dfsg-8 libboost-program-options1.62.0_1.62.0+dfsg-8 libboost-random-dev_1.62.0.1+b8 libboost-random1.62-dev_1.62.0+dfsg-8 libboost-random1.62.0_1.62.0+dfsg-8 libboost-system-dev_1.62.0.1+b8 libboost-system1.62-dev_1.62.0+dfsg-8 libboost-system1.62.0_1.62.0+dfsg-8 libboost1.62-dev_1.62.0+dfsg-8 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcairo-gobject2_1.15.10-3 libcairo-script-interpreter2_1.15.10-3 libcairo2_1.15.10-3 libcairo2-dev_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libeigen3-dev_3.3.4-4 libelf1_0.170-0.5 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.13.0-5 libfontconfig1-dev_2.13.0-5 libfreetype6_2.8.1-2 libfreetype6-dev_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 libglib2.0-dev-bin_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.8.4-1+rpi1 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblocale-gettext-perl_1.07-3+b2 liblua5.1-0_5.1.5-8.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre16-3_2:8.39-10 libpcre3_2:8.39-10 libpcre3-dev_2:8.39-10 libpcre32-3_2:8.39-10 libpcrecpp0v5_2:8.39-10 libperl5.24_5.24.1-4 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.4 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-2 libxcb-render0-dev_1.13-2 libxcb-shm0_1.13-2 libxcb-shm0-dev_1.13-2 libxcb1_1.13-2 libxcb1-dev_1.13-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-7 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.2.1-1 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 meson_0.47.1-2 mime-support_3.61 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1.1 openssl_1.1.0h-4 pandoc_2.2.1-2 pandoc-data_2.2.1-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 util-linux_2.32-0.1 uuid-dev_2.32-0.4 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 7 06:49:57 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.3+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.3+dfsg
dpkg-source: info: unpacking bali-phy_3.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.3+dfsg-1.debian.tar.xz
dpkg-source: info: applying test-python3
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-973026f5-cc64-4d4a-9b95-2a0011784690
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.3+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bali-phy-3.3+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules build-arch
dh build-arch --buildsystem=meson
dh_update_autotools_config -a -O--buildsystem=meson
dh_autoreconf -a -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.3+dfsg'
dh_auto_configure -- -Dextra-tools=false
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf -Dextra-tools=false
The Meson build system
Version: 0.47.1
Source dir: /<<BUILDDIR>>/bali-phy-3.3+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Project version: 3.3
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Native C compiler: cc (gcc 7.3.0 "cc (Raspbian 7.3.0-19) 7.3.0")
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Native C++ compiler: c++ (gcc 7.3.0 "c++ (Raspbian 7.3.0-19) 7.3.0")
Build machine cpu family: arm
Build machine cpu: armv7l
Has header "sys/resource.h": YES
Has header "fenv.h": YES
Checking for function "log2" : YES
Checking for function "feenableexcept" : YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES
Found pkg-config: /usr/bin/pkg-config (0.29)
Native dependency cairo found: YES 1.15.10
Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.62
Native dependency eigen3 found: YES 3.3.4
Has header "nlohmann/json.hpp": YES
WARNING: Project targetting '>= 0.45' but tried to use feature introduced in '0.47.0': build_always_stale arg in custom_target
Library dl found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /<<BUILDDIR>>/bali-phy-3.3+dfsg/tests/run-tests.py found: YES (/<<BUILDDIR>>/bali-phy-3.3+dfsg/tests/run-tests.py)
Program /<<BUILDDIR>>/bali-phy-3.3+dfsg/testiphy/testiphy found: NO
Build targets in project: 74
WARNING: Project specifies a minimum meson_version '>= 0.45' which conflicts with:
* 0.47.0: {'build_always_stale arg in custom_target'}
Option buildtype is: plain [default: release]
Found ninja-1.8.2 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.3+dfsg'
dh_auto_build -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/244] /usr/bin/python3 /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.3+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.3+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/244] c++ -Isrc/src@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/src@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/src@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/src@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[3/244] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/src@@libsums@sta/computation_machine_sums.cc.o'
[4/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/util.cc.o' -MF 'src/src@@bali-phy@sta/util.cc.o.d' -o 'src/src@@bali-phy@sta/util.cc.o' -c ../src/util.cc
[5/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/io.cc.o' -MF 'src/src@@bali-phy@sta/io.cc.o.d' -o 'src/src@@bali-phy@sta/io.cc.o' -c ../src/io.cc
[6/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/src@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[7/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[8/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[9/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_tree.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[10/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/src@@bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[11/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/rng.cc.o' -MF 'src/src@@bali-phy@sta/rng.cc.o.d' -o 'src/src@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc
../src/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
s <<= bits_per_read;
^~~~~~~~~~~~~
[12/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[13/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -MF 'src/src@@bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[14/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/src@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/src@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[15/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[16/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_load.cc.o' -MF 'src/src@@bali-phy@sta/alignment_load.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[17/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[18/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_partition.cc.o' -MF 'src/src@@bali-phy@sta/tools_partition.cc.o.d' -o 'src/src@@bali-phy@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[19/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[20/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/util-random.cc.o' -MF 'src/src@@bali-phy@sta/util-random.cc.o.d' -o 'src/src@@bali-phy@sta/util-random.cc.o' -c ../src/util-random.cc
[21/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -MF 'src/src@@bali-phy@sta/tree_randomtree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[22/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -MF 'src/src@@bali-phy@sta/tools_tree-dist.cc.o.d' -o 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[23/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -MF 'src/src@@bali-phy@sta/tools_parsimony.cc.o.d' -o 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[24/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/setup.cc.o' -MF 'src/src@@bali-phy@sta/setup.cc.o.d' -o 'src/src@@bali-phy@sta/setup.cc.o' -c ../src/setup.cc
[25/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_findroot.cc.o' -MF 'src/src@@bali-phy@sta/tools_findroot.cc.o.d' -o 'src/src@@bali-phy@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[26/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -MF 'src/src@@bali-phy@sta/tools_stats-table.cc.o.d' -o 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
[27/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_optimize.cc.o' -MF 'src/src@@bali-phy@sta/tools_optimize.cc.o.d' -o 'src/src@@bali-phy@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[28/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/n_indels.cc.o' -MF 'src/src@@bali-phy@sta/n_indels.cc.o.d' -o 'src/src@@bali-phy@sta/n_indels.cc.o' -c ../src/n_indels.cc
[29/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_mctree.cc.o' -MF 'src/src@@bali-phy@sta/tools_mctree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[30/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[31/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -MF 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[32/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[33/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/src@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/src@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[34/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[35/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[36/244] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[37/244] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/src@@bali-phy@sta/io.cc.o' 'src/src@@bali-phy@sta/util.cc.o' 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' 'src/src@@bali-phy@sta/tree_tree.cc.o' 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' 'src/src@@bali-phy@sta/sequence_sequence.cc.o' 'src/src@@bali-phy@sta/tree_tree-util.cc.o' 'src/src@@bali-phy@sta/tools_read-trees.cc.o' 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/src@@bali-phy@sta/rng.cc.o' 'src/src@@bali-phy@sta/alignment_load.cc.o' 'src/src@@bali-phy@sta/alignment_alignment.cc.o' 'src/src@@bali-phy@sta/tools_statistics.cc.o' 'src/src@@bali-phy@sta/tools_partition.cc.o' 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/src@@bali-phy@sta/setup.cc.o' 'src/src@@bali-phy@sta/tree_randomtree.cc.o' 'src/src@@bali-phy@sta/util-random.cc.o' 'src/src@@bali-phy@sta/tools_parsimony.cc.o' 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/src@@bali-phy@sta/tools_mctree.cc.o' 'src/src@@bali-phy@sta/tools_stats-table.cc.o' 'src/src@@bali-phy@sta/tools_findroot.cc.o' 'src/src@@bali-phy@sta/tools_optimize.cc.o' 'src/src@@bali-phy@sta/tools_distance-report.cc.o' 'src/src@@bali-phy@sta/n_indels.cc.o' 'src/src@@bali-phy@sta/tools_inverse.cc.o' 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o'
[38/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/util_ptree.cc.o' -MF 'src/src@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/src@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[39/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/src@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[40/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/src@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/src@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_patterns(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/deque:66:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc:624:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_insert_aux(__pos, __first, __last, __n);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/deque:64:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infixpat(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref desugar(const Module&, const expression_ref&, const std::set<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
[41/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_exponential.cc.o' -MF 'src/src@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/src@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc
[42/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[43/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[44/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/src@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[45/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/prior.cc.o' -MF 'src/src@@bali-phy@exe/prior.cc.o.d' -o 'src/src@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc
[46/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_choose.cc.o' -MF 'src/src@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/src@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc
[47/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[48/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[49/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parameters.cc.o' -MF 'src/src@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/src@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[50/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[51/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/src@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/TreeInterface.H:4,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[52/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/bali-phy.cc.o' -MF 'src/src@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/src@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc
[53/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[54/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[55/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_3way.cc.o' -MF 'src/src@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc
[56/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[57/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[58/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_2way.cc.o' -MF 'src/src@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc
[59/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[60/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/src@@bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
[61/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_5way.cc.o' -MF 'src/src@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc
[62/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[63/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[64/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-two-nodes.cc:29:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[65/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[66/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_setup.cc.o' -MF 'src/src@@bali-phy@exe/models_setup.cc.o.d' -o 'src/src@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator {aka __gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<std::__cxx11::basic_string<char> > > get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/util/ptree.H:12,
from ../src/models/setup.H:8,
from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
basic_json(std::initializer_list<basic_json> init,
^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/util/ptree.H:12,
from ../src/models/setup.H:8,
from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[67/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_help.cc.o' -MF 'src/src@@bali-phy@exe/startup_help.cc.o.d' -o 'src/src@@bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc
[68/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[69/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_model.cc.o' -MF 'src/src@@bali-phy@exe/models_model.cc.o.d' -o 'src/src@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util/ptree.H:5,
from ../src/models/model.cc:24:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> model_parameter_expressions(const Model&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[70/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_probability.cc.o' -MF 'src/src@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/src@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc
[71/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<T> spr_info::convert_to_vector(const std::map<tree_edge, U>&) const [with U = log_double_t]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[72/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/myexception.cc.o' -MF 'src/src@@bali-phy@exe/myexception.cc.o.d' -o 'src/src@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc
[73/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_pow2.cc.o' -MF 'src/src@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/src@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc
[74/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/src@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[75/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/monitor.cc.o' -MF 'src/src@@bali-phy@exe/monitor.cc.o.d' -o 'src/src@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc
../src/monitor.cc: In function ‘void report_mem()’:
../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
system(cmd.str().c_str());
~~~~~~^~~~~~~~~~~~~~~~~~~
[76/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[77/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/n_indels2.cc.o' -MF 'src/src@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/src@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc
[78/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[79/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/src@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[80/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/version.cc.o' -MF 'src/src@@bali-phy@exe/version.cc.o.d' -o 'src/src@@bali-phy@exe/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
[81/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[82/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/timer_stack.cc.o' -MF 'src/src@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/src@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc
[83/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[84/244] c++ -Isrc/src@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc
[85/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operator.cc.o' -MF 'src/src@@bali-phy@exe/computation_operator.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operator.cc.o' -c ../src/computation/operator.cc
[86/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
[87/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[88/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[89/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[90/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[91/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[92/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:239:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[93/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[94/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<var>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[95/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const std::vector<std::vector<std::pair<var, expression_ref> > >&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/var.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[96/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[97/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[98/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref block_case(const std::vector<expression_ref>&, const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref case_expression(const expression_ref&, const expression_ref&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref def_function(const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[99/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref get_list(const std::vector<T>&) [with T = expression_ref]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_ref_vector_from_list(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_var.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_var.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_var.cc.o' -c ../src/computation/expression/var.cc
[101/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[102/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_computation.cc.o' -MF 'src/src@@bali-phy@exe/computation_computation.cc.o.d' -o 'src/src@@bali-phy@exe/computation_computation.cc.o' -c ../src/computation/computation.cc
[103/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[104/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/src@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[105/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc
[106/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/7/map:60:0,
from ../src/util.H:37,
from ../src/object.H:7,
from ../src/computation/machine/graph_register.H:7,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from ../src/util.H:37,
from ../src/object.H:7,
from ../src/computation/machine/graph_register.H:7,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[107/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_module.cc.o' -MF 'src/src@@bali-phy@exe/computation_module.cc.o.d' -o 'src/src@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::__cxx11::string&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/set:60:0,
from ../src/computation/module.cc:1:
/usr/include/c++/7/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<std::pair<const var, expression_ref> >; _Key = var; _Val = std::pair<const var, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const var, expression_ref> >; _Compare = std::less<var>; _Alloc = std::allocator<std::pair<const var, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const var, expression_ref> >’ changed in GCC 7.1
_Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const var, expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from ../src/computation/module.H:5,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_map.h: In member function ‘void Module::import_small_decls(const Program&)’:
/usr/include/c++/7/bits/stl_map.h:887:4: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const var, expression_ref> >’ changed in GCC 7.1
{ _M_t._M_insert_unique(__first, __last); }
^~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Module::add_impdecl(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[108/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc
[109/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator {aka __gnu_cxx::__normal_iterator<closure*, std::vector<closure> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void reg_heap::incremental_evaluate_from_call(int, closure&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[110/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc
[111/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operations.cc.o' -MF 'src/src@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/operations.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[112/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_loader.cc.o' -MF 'src/src@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/src@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc
[113/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_context.cc.o' -MF 'src/src@@bali-phy@exe/computation_context.cc.o.d' -o 'src/src@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc
[114/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_closure.cc.o' -MF 'src/src@@bali-phy@exe/computation_closure.cc.o.d' -o 'src/src@@bali-phy@exe/computation_closure.cc.o' -c ../src/computation/closure.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/closure.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[115/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -c ../src/computation/optimization/let-float.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref move_lets(bool, expression_ref, std::vector<std::pair<var, expression_ref> >&, const std::set<var>&, const std::set<var>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[116/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/probability/choose.H:23,
from ../src/mcmc/sample-tri.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t, std::allocator<log_double_t> >::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void sample_A3_multi_calculation::run_dp()’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[117/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_program.cc.o' -MF 'src/src@@bali-phy@exe/computation_program.cc.o.d' -o 'src/src@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/program.H:4,
from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/program.H:4,
from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[118/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/src@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -c ../src/startup/A-T-model.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/models/model.H:42,
from ../src/models/parameters.H:36,
from ../src/startup/A-T-model.H:10,
from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
basic_json(std::initializer_list<basic_json> init,
^~~~~~~~~~
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/models/model.H:42,
from ../src/models/parameters.H:36,
from ../src/startup/A-T-model.H:10,
from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator {aka __gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[119/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_system.cc.o' -MF 'src/src@@bali-phy@exe/startup_system.cc.o.d' -o 'src/src@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc
[120/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_files.cc.o' -MF 'src/src@@bali-phy@exe/startup_files.cc.o.d' -o 'src/src@@bali-phy@exe/startup_files.cc.o' -c ../src/startup/files.cc
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/filesystem/path_traits.hpp:26,
from /usr/include/boost/filesystem/path.hpp:25,
from /usr/include/boost/filesystem/operations.hpp:25,
from ../src/startup/files.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[121/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/src@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/src@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc
[122/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_parse.cc.o' -MF 'src/src@@bali-phy@exe/parser_parse.cc.o.d' -o 'src/src@@bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::sequence_base<Derived, Elements>::parse_impl(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&, mpl_::false_) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Derived = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >; Elements = boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::nil_> > >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:114:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(begin() + (__position - cbegin()), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/spirit/home/support/string_traits.hpp:16:0,
from /usr/include/boost/spirit/home/support/nonterminal/expand_arg.hpp:20,
from /usr/include/boost/spirit/home/support/context.hpp:18,
from /usr/include/boost/spirit/home/qi/domain.hpp:18,
from /usr/include/boost/spirit/home/qi/meta_compiler.hpp:15,
from /usr/include/boost/spirit/home/qi/action/action.hpp:14,
from /usr/include/boost/spirit/home/qi/action.hpp:14,
from /usr/include/boost/spirit/home/qi.hpp:14,
from /usr/include/boost/spirit/include/qi.hpp:16,
from ../src/parser/parse.cc:17:
/usr/include/boost/spirit/home/support/container.hpp: In member function ‘bool boost::spirit::qi::list<Left, Right>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = std::vector<expression_ref>; Left = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Right = boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::list<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::local_variable<0> >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::detail::expect_function<Iterator, Context, Skipper, Exception>::operator()(const Component&) const [with Component = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >; Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Exception = boost::spirit::qi::expectation_failure<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::expect<boost::fusion::cons<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::fusion::cons<boost::spirit::qi::optional<boost::spirit::qi::action<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<std::__cxx11::basic_string<char> >, 0> >, 3> > > >, boost::fusion::cons<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[123/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_rules.cc.o' -MF 'src/src@@bali-phy@exe/models_rules.cc.o.d' -o 'src/src@@bali-phy@exe/models_rules.cc.o' -c ../src/models/rules.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/rules.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[124/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/src@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc
[125/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_translate.cc.o' -MF 'src/src@@bali-phy@exe/models_translate.cc.o.d' -o 'src/src@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extend_scope(const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&, const string&, type_t)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extend_scope(const ptree&, int, const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/translate.H:4,
from ../src/models/translate.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set<std::__cxx11::basic_string<char> >, const std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[126/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parse.cc.o' -MF 'src/src@@bali-phy@exe/models_parse.cc.o.d' -o 'src/src@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_type(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, ptree>*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[127/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_cdd101c1208ab27ecd2d29c7c9bb9e08def5a3da.dat
[128/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_unification.cc.o' -MF 'src/src@@bali-phy@exe/models_unification.cc.o.d' -o 'src/src@@bali-phy@exe/models_unification.cc.o' -c ../src/models/unification.cc
[129/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_apply(const simplifier_options&, expression_ref, const substitution&, in_scope_set&, inline_context)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_case(const simplifier_options&, const expression_ref&, const substitution&, in_scope_set&, const inline_context&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[130/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_paths.cc.o' -MF 'src/src@@bali-phy@exe/startup_paths.cc.o.d' -o 'src/src@@bali-phy@exe/startup_paths.cc.o' -c ../src/startup/paths.cc
[131/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context(expression_ref, inline_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[132/244] c++ -Isrc/builtins/src@builtins@@Data@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -MF 'src/builtins/src@builtins@@Data@sha/Data.cc.o.d' -o 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Data.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[133/244] c++ -o src/builtins/Data.so 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[134/244] c++ -Isrc/builtins/src@builtins@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -MF 'src/builtins/src@builtins@@Array@sha/Array.cc.o.d' -o 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc
[135/244] c++ -o src/builtins/Array.so 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[136/244] c++ -Isrc/builtins/src@builtins@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -MF 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc
[137/244] c++ -o src/builtins/Pair.so 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[138/244] c++ -Isrc/builtins/src@builtins@@Alphabet@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[139/244] c++ -o src/builtins/Alphabet.so 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[140/244] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<var, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<var>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<var> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[141/244] c++ -Isrc/builtins/src@builtins@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_vector_from_list(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[142/244] c++ -o src/builtins/Prelude.so 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[143/244] c++ -o src/bali-phy 'src/src@@bali-phy@exe/parser_parse.cc.o' 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/src@@bali-phy@exe/parser_desugar.cc.o' 'src/src@@bali-phy@exe/substitution_substitution.cc.o' 'src/src@@bali-phy@exe/util_ptree.cc.o' 'src/src@@bali-phy@exe/mcmc_moves.cc.o' 'src/src@@bali-phy@exe/math_exponential.cc.o' 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' 'src/src@@bali-phy@exe/models_parameters.cc.o' 'src/src@@bali-phy@exe/prior.cc.o' 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/src@@bali-phy@exe/probability_choose.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/src@@bali-phy@exe/bali-phy.cc.o' 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' 'src/src@@bali-phy@exe/dp_hmm.cc.o' 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' 'src/src@@bali-phy@exe/dp_dp-array.cc.o' 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/src@@bali-phy@exe/dp_3way.cc.o' 'src/src@@bali-phy@exe/dp_2way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/src@@bali-phy@exe/imodel_imodel.cc.o' 'src/src@@bali-phy@exe/dp_5way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/src@@bali-phy@exe/models_setup.cc.o' 'src/src@@bali-phy@exe/startup_help.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/src@@bali-phy@exe/probability_probability.cc.o' 'src/src@@bali-phy@exe/models_model.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/src@@bali-phy@exe/monitor.cc.o' 'src/src@@bali-phy@exe/myexception.cc.o' 'src/src@@bali-phy@exe/math_pow2.cc.o' 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' 'src/src@@bali-phy@exe/n_indels2.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' 'src/src@@bali-phy@exe/version.cc.o' 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/src@@bali-phy@exe/timer_stack.cc.o' 'src/src@@bali-phy@exe/mcmc_setup.cc.o' 'src/src@@bali-phy@exe/mcmc_logger.cc.o' 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' 'src/src@@bali-phy@exe/computation_operator.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/src@@bali-phy@exe/computation_expression_let.cc.o' 'src/src@@bali-phy@exe/computation_expression_case.cc.o' 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/src@@bali-phy@exe/computation_expression_list.cc.o' 'src/src@@bali-phy@exe/computation_expression_var.cc.o' 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/src@@bali-phy@exe/computation_computation.cc.o' 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/src@@bali-phy@exe/computation_preprocess.cc.o' 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/src@@bali-phy@exe/computation_module.cc.o' 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/src@@bali-phy@exe/computation_operations.cc.o' 'src/src@@bali-phy@exe/computation_loader.cc.o' 'src/src@@bali-phy@exe/computation_context.cc.o' 'src/src@@bali-phy@exe/computation_closure.cc.o' 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/src@@bali-phy@exe/computation_program.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' 'src/src@@bali-phy@exe/startup_files.cc.o' 'src/src@@bali-phy@exe/startup_loggers.cc.o' 'src/src@@bali-phy@exe/startup_system.cc.o' 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' 'src/src@@bali-phy@exe/models_rules.cc.o' 'src/src@@bali-phy@exe/models_parse.cc.o' 'src/src@@bali-phy@exe/models_translate.cc.o' 'src/src@@bali-phy@exe/models_unification.cc.o' 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/src@@bali-phy@exe/startup_paths.cc.o' 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[144/244] c++ -Isrc/builtins/src@builtins@@Modifiables@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc
[145/244] c++ -o src/builtins/Modifiables.so 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[146/244] c++ -Isrc/builtins/src@builtins@@Alignment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc
[147/244] c++ -o src/builtins/Alignment.so 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[148/244] c++ -Isrc/builtins/src@builtins@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -MF 'src/builtins/src@builtins@@Range@sha/Range.cc.o.d' -o 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc
[149/244] c++ -Isrc/builtins/src@builtins@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[150/244] c++ -o src/builtins/Range.so 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[151/244] c++ -o src/builtins/PopGen.so 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[152/244] c++ -Isrc/builtins/src@builtins@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_CRP_density(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_sample_categorical(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[153/244] c++ -o src/builtins/Distribution.so 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[154/244] c++ -Isrc/builtins/src@builtins@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -MF 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc
[155/244] c++ -o src/builtins/Vector.so 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[156/244] c++ -Isrc/builtins/src@builtins@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc
[157/244] c++ -o src/builtins/MCMC.so 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[158/244] c++ -Isrc/builtins/src@builtins@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -MF 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Environment.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[159/244] c++ -o src/builtins/Environment.so 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[160/244] c++ -Isrc/builtins/src@builtins@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -MF 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc
[161/244] c++ -o src/builtins/SModel.so 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[162/244] c++ -Isrc/src@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@model_P@exe/tools_model_P.cc.o' -MF 'src/src@@model_P@exe/tools_model_P.cc.o.d' -o 'src/src@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[163/244] c++ -o src/model_P 'src/src@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[164/244] c++ -Isrc/src@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/src@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/src@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc
[165/244] c++ -o src/stats-select 'src/src@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[166/244] c++ -o src/alignment-gild 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[167/244] c++ -Isrc/src@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@statreport@exe/tools_statreport.cc.o' -MF 'src/src@@statreport@exe/tools_statreport.cc.o.d' -o 'src/src@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[168/244] c++ -o src/statreport 'src/src@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[169/244] c++ -Isrc/builtins/src@builtins@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -MF 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc
[170/244] c++ -o src/builtins/SMC.so 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[171/244] c++ -Isrc/src@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc
[172/244] c++ -o src/alignment-consensus 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[173/244] c++ -Isrc/src@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc
[174/244] c++ -o src/alignment-chop-internal 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[175/244] c++ -Isrc/src@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc
[176/244] c++ -o src/alignment-indices 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[177/244] c++ -Isrc/src@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/src@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc
[178/244] c++ -o src/alignment-max 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[179/244] c++ -Isrc/src@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/src@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc
[180/244] c++ -o src/alignment-info 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[181/244] c++ -Isrc/src@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc
[182/244] c++ -o src/alignment-cat 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[183/244] c++ -Isrc/src@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc
[184/244] c++ -o src/alignment-translate 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[185/244] c++ -Isrc/src@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/src@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc
[186/244] c++ -o src/alignment-find 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[187/244] c++ -Isrc/src@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc
[188/244] c++ -o src/tree-mean-lengths 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[189/244] c++ -Isrc/src@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc
[190/244] c++ -o src/mctree-mean-lengths 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[191/244] c++ -Isrc/src@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc
[192/244] c++ -o src/trees-to-SRQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[193/244] c++ -Isrc/src@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[194/244] c++ -o src/trees-consensus 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[195/244] c++ -Isrc/src@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@pickout@exe/tools_pickout.cc.o' -MF 'src/src@@pickout@exe/tools_pickout.cc.o.d' -o 'src/src@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc
[196/244] c++ -o src/pickout 'src/src@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[197/244] c++ -Isrc/src@@subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@subsample@exe/tools_subsample.cc.o' -MF 'src/src@@subsample@exe/tools_subsample.cc.o.d' -o 'src/src@@subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc
[198/244] c++ -o src/subsample 'src/src@@subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[199/244] c++ -Isrc/src@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/src@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/src@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc
[200/244] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/src@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc
[201/244] c++ -o src/cut-range 'src/src@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[202/244] c++ -Isrc/src@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/src@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc
[203/244] c++ -o src/trees-distances 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[204/244] c++ -Isrc/src@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc
[205/244] c++ -Isrc/src@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc
[206/244] c++ -o src/alignment-thin 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[207/244] c++ -o src/alignments-diff 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[208/244] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<T> split(const string&, char) [with T = double]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[209/244] c++ -o src/alignment-draw 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/src@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
[210/244] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc
[211/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_591c948368b6adfaa2f3f6792aaa00de390107c0.dat
[212/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_6c76c605b6b74fd26f36975e11cba4c71dcd05ca.dat
[213/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_fa31b25999f7e3ee5d14036887d3462a5c9f0923.dat
[214/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_084446595fd3a6a8d76c6a3e7f23fefe233f8080.dat
[215/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_4aa47b11263d2ea44902560cf14764973e904cf6.dat
[216/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_553a107a17cbd08ab12fd40a84b4f41635608d8a.dat
[217/244] c++ -Isrc/src@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/src@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc
[218/244] c++ -o src/tree-tool 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[219/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_135d778f8dd412d649b8bd7af65461e578dbbb7a.dat
[220/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_45245093369bb98e65db5d104921fbeba3884ff6.dat
[221/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_bfa238fe8462578addeff9b0900fdf238262b6fb.dat
[222/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_98ef1160f67587b952c94fd6158fa69841dc36cf.dat
[223/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f5e0494d459d6e18589b0e32588096ca54090ad7.dat
[224/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_0f8d8a786a2c7e1f64fb67d4a94cfb3660797ea7.dat
[225/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_2ac4e02bb6669b39feeea4b3349fcff12dce0738.dat
[226/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_2baabe00a2257d37277c77a101cf57ae7d0fabb2.dat
[227/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_56540035d4b30238f4be6f4351f68a7b772de162.dat
[228/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_dfa3518b7719482fce42d494ac426595e7369efe.dat
[229/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_7b7357c794096fb35f715b886a452899dce8d6aa.dat
[230/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a6a875dee67b0d995212799f957dab8f73398595.dat
[231/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f20480a9482e6d8d4f4e73676da10406c32befe4.dat
[232/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a1934ed0f830dd95d619cd48cf930b1c08d68ea3.dat
[233/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_957baade3751c2cb54aedda3408f1fb5afc908f8.dat
[234/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_fc109ede6a8856d34ca5809dc54fddeaec05e90d.dat
[235/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_d327de5a74e872250082147aee5b0f087a8fee8b.dat
[236/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9aa67a9149020307a5015723959aa1f7e824a97a.dat
[237/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_3ff1722da9d8143a78b0bbc8d2ccfc83fd5feb34.dat
[238/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f7208a7ea9ed1d3331a8dec947cbe6082ca7d287.dat
[239/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_0dca9e4067c805efd7516aaadf1b88698b686449.dat
[240/244] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1923dffa93cfd0515436c708ddc5bd6bf1fd121d.dat
[241/244] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[242/244] c++ -o src/trees-bootstrap 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
[243/244] c++ -Isrc/src@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/src@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator {aka __gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[244/244] c++ -o src/draw-tree 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group /usr/lib/arm-linux-gnueabihf/libcairo.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
dh_auto_test -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[1/4] Generating git-version.h with a custom command.
[1/2] Running all tests.
1/29 bali-phy version OK 0.08 s
2/29 bali-phy help OK 0.08 s
3/29 bali-phy 5d test OK 8.58 s
4/29 bali-phy 5d +A 50 OK 63.37 s
5/29 bali-phy 5d -A 200 OK 40.42 s
6/29 model_P --help OK 0.08 s
7/29 statreport --help OK 0.07 s
8/29 stats-select --help OK 0.06 s
9/29 alignment-gild --help OK 0.04 s
10/29 alignment-consensus --help OK 0.05 s
11/29 alignment-max --help OK 0.04 s
12/29 alignment-chop-internal --help OK 0.04 s
13/29 alignment-indices --help OK 0.04 s
14/29 alignment-info --help OK 0.04 s
15/29 alignment-cat --help OK 0.04 s
16/29 alignment-translate --help OK 0.04 s
17/29 alignment-find --help OK 0.04 s
18/29 trees-consensus --help OK 0.04 s
19/29 tree-mean-lengths --help OK 0.04 s
20/29 mctree-mean-lengths --help OK 0.04 s
21/29 trees-to-SRQ --help OK 0.04 s
22/29 pickout --help OK 0.06 s
23/29 subsample --help OK 0.04 s
24/29 cut-range --help OK 0.04 s
25/29 trees-distances --help OK 0.04 s
26/29 alignment-thin --help OK 0.04 s
27/29 alignments-diff --help OK 0.04 s
28/29 tree-tool --help OK 0.05 s
29/29 bali-phy testsuite OK 560.43 s
OK: 29
FAIL: 0
SKIP: 0
TIMEOUT: 0
Full log written to /<<BUILDDIR>>/bali-phy-3.3+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=meson
dh_testroot -a -O--buildsystem=meson
dh_prep -a -O--buildsystem=meson
dh_auto_install -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && DESTDIR=/<<BUILDDIR>>/bali-phy-3.3\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/4] Generating git-version.h with a custom command.
[1/2] Installing files.
Installing subdir /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Alignment.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Alphabet.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Distributions.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/IModel.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/MCMC.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Parameters.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/PopGen.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Prelude.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Range.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SMC.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SubAIndex.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Tree.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/Data/ReadFile.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel/Codons.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel/Frequency.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel/Likelihood.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel/Nucleotides.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/SModel/ReversibleMarkov.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/modules/System/Environment.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/System
Installing subdir /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/branch_site.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/dNdS.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/density.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/empirical.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/equ.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/f.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/f1x4.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/f3x4.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/f61.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/f81.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/fMutSel.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/fMutSel0.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/fe.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/get_q.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/gtr.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/gtr_sym.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/gwF.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/gy94.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/gy94_ext.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/hky85.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/hky85_sym.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/inv.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/jc69.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/jtt.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/k80.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/lg08.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/lg08_freq.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m1a.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m2a.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m2a_test.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m3.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m3_test.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m7.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m8.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m8a.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/m8a_test.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/mg94.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/mg94_ext.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/mg94k.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/mixture.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/multiMixtureModel.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/multi_rate.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/pam.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/rs05.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/rs07.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/rs07_relaxed_rates.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/sample.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/tn93.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/tn93_sym.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/wag.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/wag_freq.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/x3.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/x3_sym.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/x3x3.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/Frequencies/uniform.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/Frequencies
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/Rates/free.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/Rates
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/Rates/gamma.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/Rates
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/Rates/log_normal.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/Rates
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/constructors/Cons.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/constructors/Nil.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/constructors/Pair.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/constructors
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/bernoulli.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/beta.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/binomial.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/dirichlet.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/dirichlet_on.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/exponential.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/gamma.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/geometric.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/iid.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/laplace.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/log_gamma.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/log_laplace.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/log_normal.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/normal.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/uniform.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/distributions/uniform_int.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/aa.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/add.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/codons.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/div.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/dna.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/exp.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/getAlphabet.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/getAminoAcids.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/getNucleotides.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/intToDouble.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/length.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/letter_pairs.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/letters.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/log.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/map.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/mul.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/num_branches.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/quantile.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/replicate.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/rna.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/standard_code.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/sub.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/take.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/uniform_discretize.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/unit_mixture.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/zip.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/functions/functions/zipWith.json to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions
Installing subdir /<<BUILDDIR>>/bali-phy-3.3+dfsg/help to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/Codons.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/Triplets.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/genetic-code.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/parameters.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/priors.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/Rao-Blackwellize.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/align.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/alphabet.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/branch-lengths.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/config.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/disable.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/enable.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/imodel.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/initial-value.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/iterations.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/link.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/model.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/name.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/package-path.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/pre-burnin.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/scale.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/seed.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/set.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/smodel.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/subsample.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/test.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/tree.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/verbose.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/help/commands/version.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing subdir /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Airline.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/CoalMine.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo1.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo2.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo3.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo4.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Demo5.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/Line.hs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/xs to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/models/ys to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/25.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/48.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/12d.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/48b.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/EF-Tu/5d.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/10-globins.xml to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/bglobin.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/few-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/few.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/globins.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/many-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/many.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Globins/some.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ITS/5.8S.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/README.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/cleaned.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/config.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/config2.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/orig.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/ferns/orig.nex to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/NOTES.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/keep.pl to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/mollusc.gb to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30.aln to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/30.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/37.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76.dnd to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/76.fasta to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/additional.accessions to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/other.accessions to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/paper.txt to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/examples/sequences/microbotryum/table1.accessions to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing src/bali-phy to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/builtins/Array.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Data.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Prelude.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alphabet.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Pair.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Modifiables.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alignment.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/PopGen.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Distribution.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Range.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SModel.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/MCMC.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Vector.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Environment.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SMC.so to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/model_P to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/statreport to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/stats-select to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-gild to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-consensus to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-max to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-chop-internal to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-indices to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-info to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-cat to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-translate to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-find to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/trees-consensus to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/tree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/mctree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/trees-to-SRQ to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/pickout to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/subsample to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/cut-range to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/trees-distances to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-thin to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignments-diff to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/tree-tool to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-draw to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/trees-bootstrap to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing src/draw-tree to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing doc/bali-phy.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/model_P.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/statreport.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/stats-select.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-gild.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-consensus.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-max.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-chop-internal.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-indices.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-info.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-cat.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-translate.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-find.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-consensus.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/mctree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-to-SRQ.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/pickout.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/subsample.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/cut-range.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-distances.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-thin.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignments-diff.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-tool.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-draw.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-bootstrap.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/draw-tree.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bp-analyze.1 to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/developer.html to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/bp-analyze to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/compare-runs.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/compare-runs2.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot1.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot2.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot3.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot2-3D.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot1-3D.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/scripts/tree-plot3-3D.R to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/doc/README.html to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/doc/README.xhtml to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy
Installing /<<BUILDDIR>>/bali-phy-3.3+dfsg/doc/README.pdf to /<<BUILDDIR>>/bali-phy-3.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy
dh_installdocs -a -O--buildsystem=meson
dh_installchangelogs -a -O--buildsystem=meson
dh_installman -a -O--buildsystem=meson
dh_perl -a -O--buildsystem=meson
dh_link -a -O--buildsystem=meson
dh_strip_nondeterminism -a -O--buildsystem=meson
dh_compress -a -O--buildsystem=meson
dh_fixperms -a -O--buildsystem=meson
dh_missing -a -O--buildsystem=meson
dh_strip -a -O--buildsystem=meson
dh_makeshlibs -a -O--buildsystem=meson
dh_shlibdeps -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z15uniform_int_pdfiii: it's probably a plugin
dpkg-shlibdeps: warning: 35 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK8alphabet5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _Z7choose212log_double_tS_: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _Z13modifiable_opR13OperationArgs: it's probably a plugin
dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN16checked_ifstreamC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_: it's probably a plugin
dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs24evaluate_slot_to_closureEi: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--buildsystem=meson
dh_gencontrol -a -O--buildsystem=meson
dh_md5sums -a -O--buildsystem=meson
dh_builddeb -a -O--buildsystem=meson
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.3+dfsg-1_armhf.deb'.
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.3+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bali-phy_3.3+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bali-phy-3.3+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-08-09T06:34:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bali-phy_3.3+dfsg-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Mon, 06 Aug 2018 13:12:11 -0700
Source: bali-phy
Binary: bali-phy
Architecture: armhf
Version: 3.3+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Benjamin Redelings <benjamin.redelings@gmail.com>
Description:
bali-phy - Bayesian Inference of Alignment and Phylogeny
Changes:
bali-phy (3.3+dfsg-1) unstable; urgency=medium
.
* New upstream version
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Files:
3d46e401e8bd6ff8806dade52cbd562e 529060 debug optional bali-phy-dbgsym_3.3+dfsg-1_armhf.deb
c368130b7eabe10683e839644e69e694 7632 science optional bali-phy_3.3+dfsg-1_armhf.buildinfo
4273b0de43a467400e71389a69ead079 4087960 science optional bali-phy_3.3+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bali-phy-dbgsym_3.3+dfsg-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 529060 bytes: control archive=2436 bytes.
2062 bytes, 12 lines control
4452 bytes, 42 lines md5sums
Package: bali-phy-dbgsym
Source: bali-phy
Version: 3.3+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5307
Depends: bali-phy (= 3.3+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for bali-phy
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drwxr-xr-x root/root 0 2018-08-06 20:12 ./usr/share/
drwxr-xr-x root/root 0 2018-08-06 20:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-08-06 20:12 ./usr/share/doc/bali-phy-dbgsym -> bali-phy
bali-phy_3.3+dfsg-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 4087960 bytes: control archive=11084 bytes.
1131 bytes, 21 lines control
35395 bytes, 411 lines md5sums
Package: bali-phy
Version: 3.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 20793
Depends: libboost-chrono1.62.0, libboost-filesystem1.62.0, libboost-program-options1.62.0, libboost-random1.62.0, libboost-system1.62.0, libc6 (>= 2.23), libcairo2 (>= 1.4.10), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), perl:any
Recommends: r-base, gnuplot
Suggests: figtree, seaview
Section: science
Priority: optional
Homepage: http://www.bali-phy.org
Description: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
drwxr-xr-x root/root 0 2018-08-06 20:12 ./
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-rwxr-xr-x root/root 5413028 2018-08-06 20:12 ./usr/bin/bali-phy
-rwxr-xr-x root/root 82446 2018-08-06 19:18 ./usr/bin/bp-analyze
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 137260
Build-Time: 3390
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 925
Job: bali-phy_3.3+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 4370
Source-Version: 3.3+dfsg-1
Space: 137260
Status: successful
Version: 3.3+dfsg-1
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Finished at 2018-08-09T06:34:30Z
Build needed 01:12:50, 137260k disc space