bali-phy →
3.2+dfsg-1 →
armhf → 2018-06-28 06:16:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| bali-phy 3.2+dfsg-1 (armhf) Thu, 28 Jun 2018 05:03:22 +0000 |
+==============================================================================+
Package: bali-phy
Version: 3.2+dfsg-1
Source Version: 3.2+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-eb7a05fc-e48d-4b81-9d41-61d42f955c64' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.5 MB in 27s (877 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1263 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bali-phy 3.2+dfsg-1 (dsc) [2185 B]
Get:2 http://172.17.0.1/private buster-staging/main bali-phy 3.2+dfsg-1 (tar) [1257 kB]
Get:3 http://172.17.0.1/private buster-staging/main bali-phy 3.2+dfsg-1 (diff) [3172 B]
Fetched 1263 kB in 0s (6962 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-gas3Qo/bali-phy-3.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-gas3Qo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-pL0H3n/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-pL0H3n/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-pL0H3n/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2920 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session libexpat1 libnss-systemd
libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13980 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
Filtered Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-pL0H3n/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Sources [574 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ Packages [657 B]
Fetched 2564 B in 1s (3794 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session libnss-systemd libpam-systemd openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1
libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev
libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson
mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal ucf uuid-dev x11-common x11proto-core-dev
x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-graph1.62-dev libboost-graph-parallel1.62-dev
libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-python1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev
libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev
libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc libmrpt-dev
libglib2.0-doc libice-doc libsm-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less
www-browser texlive-latex-recommended texlive-xetex texlive-luatex
pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1
libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev
libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson
mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal sbuild-build-depends-bali-phy-dummy ucf uuid-dev
x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 128 newly installed, 0 to remove and 18 not upgraded.
Need to get 62.0 MB/65.5 MB of archives.
After this operation, 348 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pL0H3n/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6~rc1-4 [565 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6~rc1-4 [1381 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6~rc1-4 [1637 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6~rc1-4 [234 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.4 [980 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5.1 [7003 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62.0 armhf 1.62.0+dfsg-5.1 [32.5 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62.0 armhf 1.62.0+dfsg-5.1 [36.1 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62-dev armhf 1.62.0+dfsg-5.1 [37.8 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libboost-chrono-dev armhf 1.62.0.1+b8 [4330 B]
Get:49 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:50 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62.0 armhf 1.62.0+dfsg-5.1 [58.7 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62-dev armhf 1.62.0+dfsg-5.1 [33.6 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62-dev armhf 1.62.0+dfsg-5.1 [66.6 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem-dev armhf 1.62.0.1+b8 [3732 B]
Get:54 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62.0 armhf 1.62.0+dfsg-5.1 [136 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62-dev armhf 1.62.0+dfsg-5.1 [180 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libboost-program-options-dev armhf 1.62.0.1+b8 [3716 B]
Get:57 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62.0 armhf 1.62.0+dfsg-5.1 [35.3 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62-dev armhf 1.62.0+dfsg-5.1 [35.2 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libboost-random-dev armhf 1.62.0.1+b8 [3706 B]
Get:60 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libcairo-gobject2 armhf 1.15.10-3 [101 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.15.10-3 [129 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.1 [91.3 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.0-5 [922 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13-1 [168 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.5-1 [754 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:82 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.34.0-2 [469 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13-1 [110 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13-1 [99.5 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6~rc1-3 [79.1 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6~rc1-3 [144 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.15.10-3 [597 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.4-4 [841 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1 [83.3 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-common all 2.1.0~beta3+dfsg-5.1 [46.7 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-2 armhf 2.1.0~beta3+dfsg-5.1 [191 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf ninja-build armhf 1.8.2-1 [78.8 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf meson all 0.46.1-1 [231 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf nlohmann-json-dev all 2.1.1-1.1 [395 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf pandoc-data all 1.19.2.4~dfsg-1 [236 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf pandoc armhf 1.19.2.4~dfsg-1+b2 [8599 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.4 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-6-base_6.4.0-18+rpi1 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libboost-chrono-dev_1.62.0.1+b8 libboost-chrono1.62-dev_1.62.0+dfsg-5.1 libboost-chrono1.62.0_1.62.0+dfsg-5.1 libboost-dev_1.62.0.1+b8 libboost-filesystem-dev_1.62.0.1+b8 libboost-filesystem1.62-dev_1.62.0+dfsg-5.1 libboost-filesystem1.62.0_1.62.0+dfsg-5.1 libboost-program-options-dev_1.62.0.1+b8 libboost-program-options1.62-dev_1.62.0+dfsg-5.1 libboost-program-options1.62.0_1.62.0+dfsg-5.1 libboost-random-dev_1.62.0.1+b8 libboost-random1.62-dev_1.62.0+dfsg-5.1 libboost-random1.62.0_1.62.0+dfsg-5.1 libboost-system-dev_1.62.0.1+b8 libboost-system1.62-dev_1.62.0+dfsg-5.1 libboost-system1.62.0_1.62.0+dfsg-5.1 libboost1.62-dev_1.62.0+dfsg-5.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcairo-gobject2_1.15.10-3 libcairo-script-interpreter2_1.15.10-3 libcairo2_1.15.10-3 libcairo2-dev_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libeigen3-dev_3.3.4-4 libelf1_0.170-0.4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.13.0-5 libfontconfig1-dev_2.13.0-5 libfreetype6_2.8.1-2 libfreetype6-dev_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 libglib2.0-dev-bin_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.7.6-1+b1 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblocale-gettext-perl_1.07-3+b2 liblua5.1-0_5.1.5-8.1 libluajit-5.1-2_2.1.0~beta3+dfsg-5.1 libluajit-5.1-common_2.1.0~beta3+dfsg-5.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.6~rc1-4 libpython3.6-stdlib_3.6.6~rc1-4 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libuuid1_2.32-0.1 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-render0-dev_1.13-1 libxcb-shm0_1.13-1 libxcb-shm0-dev_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-7 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.1.7-2 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 meson_0.46.1-1 mime-support_3.61 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1.1 openssl_1.1.0h-4 pandoc_1.19.2.4~dfsg-1+b2 pandoc-data_1.19.2.4~dfsg-1 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.5-3 python3-distutils_3.6.6~rc1-3 python3-lib2to3_3.6.6~rc1-3 python3-minimal_3.6.5-3 python3.6_3.6.6~rc1-4 python3.6-minimal_3.6.6~rc1-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 util-linux_2.32-0.1 uuid-dev_2.32-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Jun 26 08:06:27 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.2+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.2+dfsg
dpkg-source: info: unpacking bali-phy_3.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.2+dfsg-1.debian.tar.xz
dpkg-source: info: applying test-python3
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-eb7a05fc-e48d-4b81-9d41-61d42f955c64
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bali-phy-3.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules build-arch
dh build-arch --buildsystem=meson
dh_update_autotools_config -a -O--buildsystem=meson
dh_autoreconf -a -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.2+dfsg'
dh_auto_configure -- -Dextra-tools=false
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf -Dextra-tools=false
The Meson build system
Version: 0.46.1
Source dir: /<<BUILDDIR>>/bali-phy-3.2+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Native C compiler: cc (gcc 7.3.0 "cc (Raspbian 7.3.0-19) 7.3.0")
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Native C++ compiler: c++ (gcc 7.3.0 "c++ (Raspbian 7.3.0-19) 7.3.0")
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Build machine cpu family: arm
Build machine cpu: armv7l
Has header "sys/resource.h": YES
Has header "fenv.h": YES
Checking for function "log2": YES
Checking for function "feenableexcept": YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES
Found pkg-config: /usr/bin/pkg-config (0.29)
Native dependency cairo found: YES 1.15.10
Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.62
Native dependency eigen3 found: YES 3.3.4
Has header "nlohmann/json.hpp": YES
Library dl found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /<<BUILDDIR>>/bali-phy-3.2+dfsg/tests/run-tests.py found: YES (/<<BUILDDIR>>/bali-phy-3.2+dfsg/tests/run-tests.py)
Program /<<BUILDDIR>>/bali-phy-3.2+dfsg/testiphy/testiphy found: NO
Build targets in project: 74
Found ninja-1.8.2 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.2+dfsg'
dh_auto_build -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/245] /usr/bin/python3 /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.2+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.2+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/245] c++ -Isrc/src@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/src@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/src@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/src@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[3/245] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/src@@libsums@sta/computation_machine_sums.cc.o'
[4/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/util.cc.o' -MF 'src/src@@bali-phy@sta/util.cc.o.d' -o 'src/src@@bali-phy@sta/util.cc.o' -c ../src/util.cc
[5/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/io.cc.o' -MF 'src/src@@bali-phy@sta/io.cc.o.d' -o 'src/src@@bali-phy@sta/io.cc.o' -c ../src/io.cc
[6/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/src@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[7/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[8/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[9/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_tree.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[10/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/src@@bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[11/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/rng.cc.o' -MF 'src/src@@bali-phy@sta/rng.cc.o.d' -o 'src/src@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc
../src/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
s <<= bits_per_read;
^~~~~~~~~~~~~
[12/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -MF 'src/src@@bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[13/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[14/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/src@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/src@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[15/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[16/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_load.cc.o' -MF 'src/src@@bali-phy@sta/alignment_load.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[17/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[18/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_partition.cc.o' -MF 'src/src@@bali-phy@sta/tools_partition.cc.o.d' -o 'src/src@@bali-phy@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[19/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[20/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/util-random.cc.o' -MF 'src/src@@bali-phy@sta/util-random.cc.o.d' -o 'src/src@@bali-phy@sta/util-random.cc.o' -c ../src/util-random.cc
[21/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -MF 'src/src@@bali-phy@sta/tree_randomtree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[22/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -MF 'src/src@@bali-phy@sta/tools_tree-dist.cc.o.d' -o 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[23/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -MF 'src/src@@bali-phy@sta/tools_parsimony.cc.o.d' -o 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[24/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/setup.cc.o' -MF 'src/src@@bali-phy@sta/setup.cc.o.d' -o 'src/src@@bali-phy@sta/setup.cc.o' -c ../src/setup.cc
[25/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_findroot.cc.o' -MF 'src/src@@bali-phy@sta/tools_findroot.cc.o.d' -o 'src/src@@bali-phy@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[26/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -MF 'src/src@@bali-phy@sta/tools_stats-table.cc.o.d' -o 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
[27/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_optimize.cc.o' -MF 'src/src@@bali-phy@sta/tools_optimize.cc.o.d' -o 'src/src@@bali-phy@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[28/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -MF 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[29/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/n_indels.cc.o' -MF 'src/src@@bali-phy@sta/n_indels.cc.o.d' -o 'src/src@@bali-phy@sta/n_indels.cc.o' -c ../src/n_indels.cc
[30/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_mctree.cc.o' -MF 'src/src@@bali-phy@sta/tools_mctree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[31/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[32/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/src@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/src@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[33/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[34/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[35/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[36/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[37/245] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/src@@bali-phy@sta/io.cc.o' 'src/src@@bali-phy@sta/util.cc.o' 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' 'src/src@@bali-phy@sta/tree_tree.cc.o' 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' 'src/src@@bali-phy@sta/sequence_sequence.cc.o' 'src/src@@bali-phy@sta/tree_tree-util.cc.o' 'src/src@@bali-phy@sta/tools_read-trees.cc.o' 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/src@@bali-phy@sta/rng.cc.o' 'src/src@@bali-phy@sta/alignment_load.cc.o' 'src/src@@bali-phy@sta/alignment_alignment.cc.o' 'src/src@@bali-phy@sta/tools_statistics.cc.o' 'src/src@@bali-phy@sta/tools_partition.cc.o' 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/src@@bali-phy@sta/setup.cc.o' 'src/src@@bali-phy@sta/tree_randomtree.cc.o' 'src/src@@bali-phy@sta/util-random.cc.o' 'src/src@@bali-phy@sta/tools_parsimony.cc.o' 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/src@@bali-phy@sta/tools_mctree.cc.o' 'src/src@@bali-phy@sta/tools_stats-table.cc.o' 'src/src@@bali-phy@sta/tools_findroot.cc.o' 'src/src@@bali-phy@sta/tools_optimize.cc.o' 'src/src@@bali-phy@sta/tools_distance-report.cc.o' 'src/src@@bali-phy@sta/n_indels.cc.o' 'src/src@@bali-phy@sta/tools_inverse.cc.o' 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o'
[38/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/util_ptree.cc.o' -MF 'src/src@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/src@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[39/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/src@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[40/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/src@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/src@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_patterns(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/deque:66:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc:624:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_insert_aux(__pos, __first, __last, __n);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/deque:64:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infixpat(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref desugar(const Module&, const expression_ref&, const std::set<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
[41/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_exponential.cc.o' -MF 'src/src@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/src@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc
[42/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/src@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[43/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[44/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[45/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/prior.cc.o' -MF 'src/src@@bali-phy@exe/prior.cc.o.d' -o 'src/src@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc
[46/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_choose.cc.o' -MF 'src/src@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/src@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc
[47/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[48/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[49/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parameters.cc.o' -MF 'src/src@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/src@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘Parameters::Parameters(const std::shared_ptr<module_loader>&, const std::vector<alignment>&, const SequenceTree&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const model_t&, const std::vector<int>&, const key_map_t&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[50/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/src@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/TreeInterface.H:4,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[51/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[52/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[53/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/bali-phy.cc.o' -MF 'src/src@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/src@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc
[54/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[55/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_3way.cc.o' -MF 'src/src@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc
[56/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[57/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[58/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_2way.cc.o' -MF 'src/src@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc
[59/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[60/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_5way.cc.o' -MF 'src/src@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc
[61/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/src@@bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
[62/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[63/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[64/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-two-nodes.cc:29:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[65/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[66/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_setup.cc.o' -MF 'src/src@@bali-phy@exe/models_setup.cc.o.d' -o 'src/src@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator {aka __gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In function ‘boost::optional<std::vector<double> > get_frequencies_from_tree(const ptree&, const alphabet&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/util/ptree.H:12,
from ../src/models/setup.H:8,
from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
basic_json(std::initializer_list<basic_json> init,
^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_fill_insert(begin() + __offset, __n, __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/util/ptree.H:12,
from ../src/models/setup.H:8,
from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[67/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[68/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_help.cc.o' -MF 'src/src@@bali-phy@exe/startup_help.cc.o.d' -o 'src/src@@bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc
[69/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<T> spr_info::convert_to_vector(const std::map<tree_edge, U>&) const [with U = log_double_t]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[70/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_probability.cc.o' -MF 'src/src@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/src@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc
[71/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_model.cc.o' -MF 'src/src@@bali-phy@exe/models_model.cc.o.d' -o 'src/src@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util/ptree.H:5,
from ../src/models/model.cc:24:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> model_parameter_expressions(const Model&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[72/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/myexception.cc.o' -MF 'src/src@@bali-phy@exe/myexception.cc.o.d' -o 'src/src@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc
[73/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_pow2.cc.o' -MF 'src/src@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/src@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc
[74/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[75/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/monitor.cc.o' -MF 'src/src@@bali-phy@exe/monitor.cc.o.d' -o 'src/src@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc
../src/monitor.cc: In function ‘void report_mem()’:
../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
system(cmd.str().c_str());
~~~~~~^~~~~~~~~~~~~~~~~~~
[76/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/src@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[77/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/n_indels2.cc.o' -MF 'src/src@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/src@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc
[78/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[79/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[80/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/src@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[81/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/version.cc.o' -MF 'src/src@@bali-phy@exe/version.cc.o.d' -o 'src/src@@bali-phy@exe/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
[82/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/timer_stack.cc.o' -MF 'src/src@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/src@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc
[83/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[84/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[85/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operator.cc.o' -MF 'src/src@@bali-phy@exe/computation_operator.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operator.cc.o' -c ../src/computation/operator.cc
[86/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[87/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[88/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
[89/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[90/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[91/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:239:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[92/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[93/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<dummy>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[94/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const std::vector<std::vector<std::pair<dummy, expression_ref> > >&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[95/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[96/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref block_case(const std::vector<expression_ref>&, const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref case_expression(const expression_ref&, const expression_ref&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref def_function(const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[97/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[98/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref get_list(const std::vector<T>&) [with T = expression_ref]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_ref_vector_from_list(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[99/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -c ../src/computation/expression/dummy.cc
[101/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_parse.cc.o' -MF 'src/src@@bali-phy@exe/parser_parse.cc.o.d' -o 'src/src@@bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::sequence_base<Derived, Elements>::parse_impl(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&, mpl_::false_) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Derived = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >; Elements = boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::plus<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::nil_> > >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:114:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(begin() + (__position - cbegin()), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/spirit/home/support/string_traits.hpp:16:0,
from /usr/include/boost/spirit/home/support/nonterminal/expand_arg.hpp:20,
from /usr/include/boost/spirit/home/support/context.hpp:18,
from /usr/include/boost/spirit/home/qi/domain.hpp:18,
from /usr/include/boost/spirit/home/qi/meta_compiler.hpp:15,
from /usr/include/boost/spirit/home/qi/action/action.hpp:14,
from /usr/include/boost/spirit/home/qi/action.hpp:14,
from /usr/include/boost/spirit/home/qi.hpp:14,
from /usr/include/boost/spirit/include/qi.hpp:16,
from ../src/parser/parse.cc:17:
/usr/include/boost/spirit/home/support/container.hpp: In member function ‘bool boost::spirit::qi::list<Left, Right>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = std::vector<expression_ref>; Left = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Right = boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::list<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::local_variable<0> >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
c.insert(c.end(), val);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<AST_node> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<std::__cxx11::basic_string<char> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> > >, 3> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::detail::expect_function<Iterator, Context, Skipper, Exception>::operator()(const Component&) const [with Component = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >; Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Exception = boost::spirit::qi::expectation_failure<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::kleene<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::optional<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int> >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::expect<boost::fusion::cons<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::fusion::cons<boost::spirit::qi::optional<boost::spirit::qi::action<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<std::__cxx11::basic_string<char> >, 0> >, 3> > > >, boost::fusion::cons<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[102/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_computation.cc.o' -MF 'src/src@@bali-phy@exe/computation_computation.cc.o.d' -o 'src/src@@bali-phy@exe/computation_computation.cc.o' -c ../src/computation/computation.cc
[103/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[104/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/src@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[105/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc
[106/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_model_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -c ../src/computation/model_expression.cc
[107/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/7/map:60:0,
from ../src/util.H:37,
from ../src/object.H:7,
from ../src/computation/machine/graph_register.H:7,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from ../src/util.H:37,
from ../src/object.H:7,
from ../src/computation/machine/graph_register.H:7,
from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[108/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_module.cc.o' -MF 'src/src@@bali-phy@exe/computation_module.cc.o.d' -o 'src/src@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc
In file included from /usr/include/c++/7/set:60:0,
from ../src/computation/module.cc:1:
/usr/include/c++/7/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >; _Key = dummy; _Val = std::pair<const dummy, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const dummy, expression_ref> >; _Compare = std::less<dummy>; _Alloc = std::allocator<std::pair<const dummy, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
_Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from ../src/computation/module.H:5,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_map.h: In member function ‘void Module::import_small_decls(const Program&)’:
/usr/include/c++/7/bits/stl_map.h:887:4: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
{ _M_t._M_insert_unique(__first, __last); }
^~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/module.H:7,
from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::__cxx11::string&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Module::add_impdecl(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[109/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc
[110/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc
[111/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator {aka __gnu_cxx::__normal_iterator<closure*, std::vector<closure> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void reg_heap::incremental_evaluate_from_call(int, closure&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[112/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_closure.cc.o' -MF 'src/src@@bali-phy@exe/computation_closure.cc.o.d' -o 'src/src@@bali-phy@exe/computation_closure.cc.o' -c ../src/computation/closure.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/closure.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[113/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operations.cc.o' -MF 'src/src@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/operations.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[114/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_context.cc.o' -MF 'src/src@@bali-phy@exe/computation_context.cc.o.d' -o 'src/src@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc
[115/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_loader.cc.o' -MF 'src/src@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/src@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc
[116/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -c ../src/computation/optimization/let-float.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref move_lets(bool, expression_ref, std::vector<std::pair<dummy, expression_ref> >&, const std::set<dummy>&, const std::set<dummy>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[117/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/probability/choose.H:23,
from ../src/mcmc/sample-tri.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t, std::allocator<log_double_t> >::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void sample_A3_multi_calculation::run_dp()’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[118/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_program.cc.o' -MF 'src/src@@bali-phy@exe/computation_program.cc.o.d' -o 'src/src@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/program.H:4,
from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/program.H:4,
from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[119/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_system.cc.o' -MF 'src/src@@bali-phy@exe/startup_system.cc.o.d' -o 'src/src@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc
[120/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_files.cc.o' -MF 'src/src@@bali-phy@exe/startup_files.cc.o.d' -o 'src/src@@bali-phy@exe/startup_files.cc.o' -c ../src/startup/files.cc
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/filesystem/path_traits.hpp:26,
from /usr/include/boost/filesystem/path.hpp:25,
from /usr/include/boost/filesystem/operations.hpp:25,
from ../src/startup/files.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[121/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/src@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -c ../src/startup/A-T-model.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/models/model.H:42,
from ../src/models/parameters.H:36,
from ../src/startup/A-T-model.H:10,
from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
basic_json(std::initializer_list<basic_json> init,
^~~~~~~~~~
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&, const Rules&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
from ../src/models/model.H:42,
from ../src/models/parameters.H:36,
from ../src/startup/A-T-model.H:10,
from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
return basic_json(init, false, value_t::array);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/startup/A-T-model.H:4,
from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator {aka __gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[122/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/src@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/src@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc
[123/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/src@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc
[124/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_rules.cc.o' -MF 'src/src@@bali-phy@exe/models_rules.cc.o.d' -o 'src/src@@bali-phy@exe/models_rules.cc.o' -c ../src/models/rules.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/rules.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[125/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parse.cc.o' -MF 'src/src@@bali-phy@exe/models_parse.cc.o.d' -o 'src/src@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_type(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, ptree>*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[126/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_c130f4dab5bbed3fdf4c97375928a702d852c349.dat
[127/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_unification.cc.o' -MF 'src/src@@bali-phy@exe/models_unification.cc.o.d' -o 'src/src@@bali-phy@exe/models_unification.cc.o' -c ../src/models/unification.cc
[128/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_paths.cc.o' -MF 'src/src@@bali-phy@exe/startup_paths.cc.o.d' -o 'src/src@@bali-phy@exe/startup_paths.cc.o' -c ../src/startup/paths.cc
[129/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_apply(const simplifier_options&, expression_ref, const substitution&, in_scope_set&, inline_context)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_case(const simplifier_options&, const expression_ref&, const substitution&, in_scope_set&, const inline_context&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[130/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_translate.cc.o' -MF 'src/src@@bali-phy@exe/models_translate.cc.o.d' -o 'src/src@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc
[131/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context(expression_ref, inline_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[132/245] c++ -Isrc/builtins/src@builtins@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -MF 'src/builtins/src@builtins@@Array@sha/Array.cc.o.d' -o 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc
[133/245] c++ -Isrc/builtins/src@builtins@@Data@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -MF 'src/builtins/src@builtins@@Data@sha/Data.cc.o.d' -o 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Data.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[134/245] c++ -o src/builtins/Data.so 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[135/245] c++ -o src/builtins/Array.so 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[136/245] c++ -Isrc/builtins/src@builtins@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -MF 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc
[137/245] c++ -Isrc/builtins/src@builtins@@Alphabet@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[138/245] c++ -o src/builtins/Alphabet.so 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[139/245] c++ -o src/builtins/Pair.so 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[140/245] c++ -Isrc/builtins/src@builtins@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_vector_from_list(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[141/245] c++ -o src/builtins/Prelude.so 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[142/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<dummy, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<dummy>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<dummy> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[143/245] c++ -o src/bali-phy 'src/src@@bali-phy@exe/parser_parse.cc.o' 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/src@@bali-phy@exe/parser_desugar.cc.o' 'src/src@@bali-phy@exe/substitution_substitution.cc.o' 'src/src@@bali-phy@exe/util_ptree.cc.o' 'src/src@@bali-phy@exe/mcmc_moves.cc.o' 'src/src@@bali-phy@exe/math_exponential.cc.o' 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' 'src/src@@bali-phy@exe/models_parameters.cc.o' 'src/src@@bali-phy@exe/prior.cc.o' 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/src@@bali-phy@exe/probability_choose.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/src@@bali-phy@exe/bali-phy.cc.o' 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' 'src/src@@bali-phy@exe/dp_hmm.cc.o' 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' 'src/src@@bali-phy@exe/dp_dp-array.cc.o' 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/src@@bali-phy@exe/dp_3way.cc.o' 'src/src@@bali-phy@exe/dp_2way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/src@@bali-phy@exe/imodel_imodel.cc.o' 'src/src@@bali-phy@exe/dp_5way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/src@@bali-phy@exe/models_setup.cc.o' 'src/src@@bali-phy@exe/startup_help.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/src@@bali-phy@exe/probability_probability.cc.o' 'src/src@@bali-phy@exe/models_model.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/src@@bali-phy@exe/monitor.cc.o' 'src/src@@bali-phy@exe/myexception.cc.o' 'src/src@@bali-phy@exe/math_pow2.cc.o' 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' 'src/src@@bali-phy@exe/n_indels2.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' 'src/src@@bali-phy@exe/version.cc.o' 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/src@@bali-phy@exe/timer_stack.cc.o' 'src/src@@bali-phy@exe/mcmc_setup.cc.o' 'src/src@@bali-phy@exe/mcmc_logger.cc.o' 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' 'src/src@@bali-phy@exe/computation_operator.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/src@@bali-phy@exe/computation_expression_let.cc.o' 'src/src@@bali-phy@exe/computation_expression_case.cc.o' 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/src@@bali-phy@exe/computation_expression_list.cc.o' 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/src@@bali-phy@exe/computation_computation.cc.o' 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/src@@bali-phy@exe/computation_preprocess.cc.o' 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/src@@bali-phy@exe/computation_module.cc.o' 'src/src@@bali-phy@exe/computation_model_expression.cc.o' 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/src@@bali-phy@exe/computation_operations.cc.o' 'src/src@@bali-phy@exe/computation_loader.cc.o' 'src/src@@bali-phy@exe/computation_context.cc.o' 'src/src@@bali-phy@exe/computation_closure.cc.o' 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/src@@bali-phy@exe/computation_program.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' 'src/src@@bali-phy@exe/startup_files.cc.o' 'src/src@@bali-phy@exe/startup_loggers.cc.o' 'src/src@@bali-phy@exe/startup_system.cc.o' 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' 'src/src@@bali-phy@exe/models_rules.cc.o' 'src/src@@bali-phy@exe/models_parse.cc.o' 'src/src@@bali-phy@exe/models_translate.cc.o' 'src/src@@bali-phy@exe/models_unification.cc.o' 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/src@@bali-phy@exe/startup_paths.cc.o' 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[144/245] c++ -Isrc/builtins/src@builtins@@Modifiables@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc
[145/245] c++ -o src/builtins/Modifiables.so 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[146/245] c++ -Isrc/builtins/src@builtins@@Alignment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc
[147/245] c++ -o src/builtins/Alignment.so 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[148/245] c++ -Isrc/builtins/src@builtins@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[149/245] c++ -o src/builtins/PopGen.so 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[150/245] c++ -Isrc/builtins/src@builtins@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -MF 'src/builtins/src@builtins@@Range@sha/Range.cc.o.d' -o 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc
[151/245] c++ -o src/builtins/Range.so 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[152/245] c++ -Isrc/builtins/src@builtins@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_CRP_density(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_sample_categorical(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[153/245] c++ -o src/builtins/Distribution.so 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[154/245] c++ -Isrc/builtins/src@builtins@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc
[155/245] c++ -o src/builtins/MCMC.so 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[156/245] c++ -Isrc/builtins/src@builtins@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -MF 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc
[157/245] c++ -o src/builtins/Vector.so 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[158/245] c++ -Isrc/builtins/src@builtins@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -MF 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc
[159/245] c++ -o src/builtins/SModel.so 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[160/245] c++ -Isrc/builtins/src@builtins@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -MF 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/builtins/../util.H:31,
from ../src/builtins/../object.H:7,
from ../src/builtins/../computation/computation.H:4,
from ../src/builtins/Environment.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[161/245] c++ -o src/builtins/Environment.so 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[162/245] c++ -Isrc/src@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@model_P@exe/tools_model_P.cc.o' -MF 'src/src@@model_P@exe/tools_model_P.cc.o.d' -o 'src/src@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[163/245] c++ -Isrc/src@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc
[164/245] c++ -o src/model_P 'src/src@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[165/245] c++ -Isrc/src@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@statreport@exe/tools_statreport.cc.o' -MF 'src/src@@statreport@exe/tools_statreport.cc.o.d' -o 'src/src@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/util.H:34,
from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[166/245] c++ -o src/statreport 'src/src@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[167/245] c++ -Isrc/builtins/src@builtins@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -MF 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc
[168/245] c++ -o src/builtins/SMC.so 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group
[169/245] c++ -o src/alignment-gild 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[170/245] c++ -Isrc/src@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/src@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/src@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc
[171/245] c++ -o src/stats-select 'src/src@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[172/245] c++ -Isrc/src@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc
[173/245] c++ -o src/alignment-consensus 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[174/245] c++ -Isrc/src@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc
[175/245] c++ -o src/alignment-chop-internal 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[176/245] c++ -Isrc/src@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc
[177/245] c++ -o src/alignment-indices 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[178/245] c++ -Isrc/src@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/src@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc
[179/245] c++ -Isrc/src@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/src@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc
[180/245] c++ -o src/alignment-info 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[181/245] c++ -o src/alignment-max 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[182/245] c++ -Isrc/src@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc
[183/245] c++ -o src/alignment-cat 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[184/245] c++ -Isrc/src@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/src@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc
[185/245] c++ -o src/alignment-find 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[186/245] c++ -Isrc/src@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc
[187/245] c++ -o src/alignment-translate 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[188/245] c++ -Isrc/src@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc
[189/245] c++ -o src/tree-mean-lengths 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[190/245] c++ -Isrc/src@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[191/245] c++ -o src/trees-consensus 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[192/245] c++ -Isrc/src@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc
[193/245] c++ -o src/mctree-mean-lengths 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[194/245] c++ -Isrc/src@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc
[195/245] c++ -o src/trees-to-SRQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[196/245] c++ -Isrc/src@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@pickout@exe/tools_pickout.cc.o' -MF 'src/src@@pickout@exe/tools_pickout.cc.o.d' -o 'src/src@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc
[197/245] c++ -o src/pickout 'src/src@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[198/245] c++ -Isrc/src@@subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@subsample@exe/tools_subsample.cc.o' -MF 'src/src@@subsample@exe/tools_subsample.cc.o.d' -o 'src/src@@subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc
[199/245] c++ -o src/subsample 'src/src@@subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[200/245] c++ -Isrc/src@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/src@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/src@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc
[201/245] c++ -o src/cut-range 'src/src@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[202/245] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/src@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc
[203/245] c++ -Isrc/src@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/src@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc
[204/245] c++ -o src/trees-distances 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[205/245] c++ -Isrc/src@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc
[206/245] c++ -Isrc/src@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc
[207/245] c++ -o src/alignment-thin 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[208/245] c++ -o src/alignments-diff 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[209/245] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc
[210/245] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<T> split(const string&, char) [with T = double]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[211/245] c++ -o src/alignment-draw 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/src@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
[212/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_7de238f3673b161c28bca5908a505e48e7b29718.dat
[213/245] c++ -Isrc/src@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/src@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc
[214/245] c++ -o src/tree-tool 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[215/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_090e7d5dd5878c0a9042d1ba8e18a0bb9081b306.dat
[216/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1bde538dfc5498bb0b44256c3c0936ad950f313b.dat
[217/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_2cb986a6d2d955491eb5a46ab7f53f90cf56cb64.dat
[218/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_32c8c7170b66a6eeb7e9f093a739b285d1a9ba3c.dat
[219/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_12e7104386a40b8d8b7bfeab0632838396c1f2ee.dat
[220/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a3c41649c4454cf4d19c2935d1f264f387dff4b6.dat
[221/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_42d867db86700c0c2c999dc6aaa27304be289b28.dat
[222/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_28ca3a56df941304244cca4f96376a38f6fc6bb9.dat
[223/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_846e1e8492ec243a8c640418722634342c8eb121.dat
[224/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_5a0665ee673819bdd3a2ac74768238e0b61276c7.dat
[225/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_58e76a2bd3ec6ae1daf6a4170b7b38a8bbf8134d.dat
[226/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_b59e427e19c870f260e2acd06d224bfcafc0cb32.dat
[227/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a548fa542ae5a99f69d8b42c55c50f934334964a.dat
[228/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_97a45da1d01ef3507b303ab7c1b8a51e81deb347.dat
[229/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_3de909ffedfeaa6baebb7fc3fb3c43b8ba7c2742.dat
[230/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_c3a6edb784637a964524ec1a201f220949b72e10.dat
[231/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_56105ed41377b2818e209ca5d525fb1731775b0e.dat
[232/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_b4daa1cdf4b683f090230dedde6700b17c4f05b3.dat
[233/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_2f92c213be38bcdb971eabce4466525b53beb9db.dat
[234/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_baaf08f5ad83822fda792d1b641873f18ccc5622.dat
[235/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ef3ae53afb4c41a306a6e6cae314f64493677d65.dat
[236/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_0c61eea18c1f1c4194b264276a2e0ed71e7e5189.dat
[237/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_6b300f8824f1aca91c9a8ba6d33157e58c0b5978.dat
[238/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_0f961f267380a2a901db94a049b6c290aeeb27a3.dat
[239/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ab1ab16f472f74a8f40ab3fe6851d8f46ffaca9b.dat
[240/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_0b07d265c0f1b59a8039be010068026a790c2a20.dat
[241/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8c31b04a0d523bf43d5a77554fd06b8cb2ebd990.dat
[242/245] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[243/245] c++ -o src/trees-bootstrap 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
[244/245] c++ -Isrc/src@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/src@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator {aka __gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[245/245] c++ -o src/draw-tree 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lcairo -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono
dh_auto_test -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[1/4] Generating git-version.h with a custom command.
[1/2] Running all tests.
1/29 bali-phy version OK 0.08 s
2/29 bali-phy help OK 0.08 s
3/29 bali-phy 5d test OK 9.33 s
4/29 bali-phy 5d +A 50 OK 66.27 s
5/29 bali-phy 5d -A 200 OK 47.22 s
6/29 model_P --help OK 0.08 s
7/29 statreport --help OK 0.07 s
8/29 stats-select --help OK 0.05 s
9/29 alignment-gild --help OK 0.05 s
10/29 alignment-consensus --help OK 0.05 s
11/29 alignment-max --help OK 0.05 s
12/29 alignment-chop-internal --help OK 0.05 s
13/29 alignment-indices --help OK 0.04 s
14/29 alignment-info --help OK 0.04 s
15/29 alignment-cat --help OK 0.04 s
16/29 alignment-translate --help OK 0.04 s
17/29 alignment-find --help OK 0.04 s
18/29 trees-consensus --help OK 0.04 s
19/29 tree-mean-lengths --help OK 0.04 s
20/29 mctree-mean-lengths --help OK 0.04 s
21/29 trees-to-SRQ --help OK 0.04 s
22/29 pickout --help OK 0.04 s
23/29 subsample --help OK 0.04 s
24/29 cut-range --help OK 0.04 s
25/29 trees-distances --help OK 0.04 s
26/29 alignment-thin --help OK 0.05 s
27/29 alignments-diff --help OK 0.04 s
28/29 tree-tool --help OK 0.04 s
29/29 bali-phy testsuite OK 602.21 s
OK: 29
FAIL: 0
SKIP: 0
TIMEOUT: 0
Full log written to /<<BUILDDIR>>/bali-phy-3.2+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=meson
dh_testroot -a -O--buildsystem=meson
dh_prep -a -O--buildsystem=meson
dh_auto_install -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && DESTDIR=/<<BUILDDIR>>/bali-phy-3.2\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/4] Generating git-version.h with a custom command.
[1/2] Installing files.
Installing subdir /<<BUILDDIR>>/bali-phy-3.2+dfsg/modules to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/modules
Installing subdir /<<BUILDDIR>>/bali-phy-3.2+dfsg/functions to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/functions
Installing subdir /<<BUILDDIR>>/bali-phy-3.2+dfsg/help to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing subdir /<<BUILDDIR>>/bali-phy-3.2+dfsg/examples to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing src/bali-phy to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/bali-phy
Installing src/builtins/Array.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Array.so
Installing src/builtins/Data.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Data.so
Installing src/builtins/Prelude.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Prelude.so
Installing src/builtins/Alphabet.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Alphabet.so
Installing src/builtins/Pair.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Pair.so
Installing src/builtins/Modifiables.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Modifiables.so
Installing src/builtins/Alignment.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Alignment.so
Installing src/builtins/PopGen.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/PopGen.so
Installing src/builtins/Distribution.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Distribution.so
Installing src/builtins/Range.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Range.so
Installing src/builtins/SModel.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/SModel.so
Installing src/builtins/MCMC.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/MCMC.so
Installing src/builtins/Vector.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Vector.so
Installing src/builtins/Environment.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/Environment.so
Installing src/builtins/SMC.so to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/SMC.so
Installing src/model_P to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/model_P
Installing src/statreport to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/statreport
Installing src/stats-select to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/stats-select
Installing src/alignment-gild to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-gild
Installing src/alignment-consensus to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-consensus
Installing src/alignment-max to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-max
Installing src/alignment-chop-internal to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-chop-internal
Installing src/alignment-indices to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-indices
Installing src/alignment-info to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-info
Installing src/alignment-cat to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-cat
Installing src/alignment-translate to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-translate
Installing src/alignment-find to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-find
Installing src/trees-consensus to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/trees-consensus
Installing src/tree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/tree-mean-lengths
Installing src/mctree-mean-lengths to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/mctree-mean-lengths
Installing src/trees-to-SRQ to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/trees-to-SRQ
Installing src/pickout to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/pickout
Installing src/subsample to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/subsample
Installing src/cut-range to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/cut-range
Installing src/trees-distances to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/trees-distances
Installing src/alignment-thin to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-thin
Installing src/alignments-diff to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignments-diff
Installing src/tree-tool to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/tree-tool
Installing src/alignment-draw to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/alignment-draw
Installing src/trees-bootstrap to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/trees-bootstrap
Installing src/draw-tree to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin/draw-tree
Installing doc/bali-phy.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/bali-phy.1
Installing doc/model_P.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/model_P.1
Installing doc/statreport.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/statreport.1
Installing doc/stats-select.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/stats-select.1
Installing doc/alignment-gild.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-gild.1
Installing doc/alignment-consensus.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-consensus.1
Installing doc/alignment-max.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-max.1
Installing doc/alignment-chop-internal.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-chop-internal.1
Installing doc/alignment-indices.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-indices.1
Installing doc/alignment-info.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-info.1
Installing doc/alignment-cat.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-cat.1
Installing doc/alignment-translate.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-translate.1
Installing doc/alignment-find.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-find.1
Installing doc/trees-consensus.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/trees-consensus.1
Installing doc/tree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/tree-mean-lengths.1
Installing doc/mctree-mean-lengths.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/mctree-mean-lengths.1
Installing doc/trees-to-SRQ.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/trees-to-SRQ.1
Installing doc/pickout.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/pickout.1
Installing doc/subsample.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/subsample.1
Installing doc/cut-range.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/cut-range.1
Installing doc/trees-distances.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/trees-distances.1
Installing doc/alignment-thin.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-thin.1
Installing doc/alignments-diff.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignments-diff.1
Installing doc/tree-tool.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/tree-tool.1
Installing doc/alignment-draw.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/alignment-draw.1
Installing doc/trees-bootstrap.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/trees-bootstrap.1
Installing doc/draw-tree.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/draw-tree.1
Installing doc/bp-analyze.1 to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/man/man1/bp-analyze.1
Installing doc/developer.html to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy/developer.html
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/bp-analyze to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/bin
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/compare-runs.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/compare-runs2.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot1.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot2.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot3.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot2-3D.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot1-3D.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/scripts/tree-plot3-3D.R to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/doc/README.html to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/doc/README.xhtml to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy
Installing /<<BUILDDIR>>/bali-phy-3.2+dfsg/doc/README.pdf to /<<BUILDDIR>>/bali-phy-3.2+dfsg/debian/bali-phy/usr/share/doc/bali-phy
dh_installdocs -a -O--buildsystem=meson
dh_installchangelogs -a -O--buildsystem=meson
dh_installman -a -O--buildsystem=meson
dh_perl -a -O--buildsystem=meson
dh_link -a -O--buildsystem=meson
dh_strip_nondeterminism -a -O--buildsystem=meson
dh_compress -a -O--buildsystem=meson
dh_fixperms -a -O--buildsystem=meson
dh_missing -a -O--buildsystem=meson
dh_strip -a -O--buildsystem=meson
dh_makeshlibs -a -O--buildsystem=meson
dh_shlibdeps -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZN13OperationArgs20evaluate_slot_to_regEi: it's probably a plugin
dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _Z16portable_getlineRSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZN11constructorC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 35 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN11constructorC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZN8reg_heap16set_shared_valueEii: it's probably a plugin
dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution21calc_root_probabilityEPK23Likelihood_Cache_BranchS2_S2_RK20pairwise_alignment_tS5_S5_RKN8bali_phy6matrixIdEE: it's probably a plugin
dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _Z11fragmentizeRN8bali_phy6matrixIdEEd: it's probably a plugin
dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--buildsystem=meson
dh_gencontrol -a -O--buildsystem=meson
dh_md5sums -a -O--buildsystem=meson
dh_builddeb -a -O--buildsystem=meson
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.2+dfsg-1_armhf.deb'.
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.2+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bali-phy_3.2+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bali-phy-3.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-06-28T06:15:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bali-phy_3.2+dfsg-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Mon, 25 Jun 2018 21:39:12 -0400
Source: bali-phy
Binary: bali-phy
Architecture: armhf
Version: 3.2+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Benjamin Redelings <benjamin.redelings@gmail.com>
Description:
bali-phy - Bayesian Inference of Alignment and Phylogeny
Changes:
bali-phy (3.2+dfsg-1) unstable; urgency=medium
.
* New upstream version
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Files:
8b34f71ab894c0fdc4a8d2db9c117204 530324 debug optional bali-phy-dbgsym_3.2+dfsg-1_armhf.deb
b1218409d52e08704e3c6e4eb4650d92 7771 science optional bali-phy_3.2+dfsg-1_armhf.buildinfo
aa4ddb02f2585216c7a9358415154859 4060236 science optional bali-phy_3.2+dfsg-1_armhf.deb
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| Package contents |
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bali-phy-dbgsym_3.2+dfsg-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 530324 bytes: control archive=2440 bytes.
2062 bytes, 12 lines control
4452 bytes, 42 lines md5sums
Package: bali-phy-dbgsym
Source: bali-phy
Version: 3.2+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5307
Depends: bali-phy (= 3.2+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for bali-phy
Build-Ids: 10b0901040ffdc6b92e60322f95e44303c878568 1dca5aa456688fec5810206b083a9dcd156dcb94 23b7d9478a31e04f981671fa034a49f99889e0a5 25799099665e19a9fed3b2c4b60f236ab29e8f32 2cc8b34e4277eadc7ca6ce8df3029a51ec98f080 2d65e0f2f5b37631ed28a39ac784f761cfcb03c1 321f0359e6f8c184f043a89816db80ff5eb144d7 34a77e234cd39a0e412cbcced49ff5c753184d70 3865a0a1c3b481d5dccb2578c390904f3e86c0e7 38e6e3e45725a95cce680775af08b14e437a7baa 3fa33beb952d5a151f92de61bde7b9c6d56c681b 4921ab1b6b2dfb3f1e4d55df8ca4550d16cafae4 4af12dfe5154cf61300c39e18ad208bad7bd5ff7 4c5ec5047176daad19bef7279c2ab144834c82f6 5ab886d5ae81b0fc8fcefe8bba6045285d46871b 5f62a568717ef982c25b78f069e32f2fbe08532b 61af8954d25a5d77fbd4ba954f9fdc7c1b1f4b92 650157eef6f36829592a3b939ab5c5d20f0fc31f 6e5422fc1bf9f96f763d18894545ec87f233034d 717ef95366af157c56389e267cea8917cb52b8bb 7bf07697632d2ca62b52c53a4b8a9ee743241ce1 7f6947494e6e104d066259d6b3e4a3f62e23cce7 7f82c9ad5531d5de8a17713428894ad215ee96f7 809b7618028d9d16e70f5a8265ad98861d4d1647 828bdf0ea39a7a34ce6e94a9697066a512a3b94b 85b7e41318a14fe2dc5f22dc6e95c4b249684b05 8f40aa1a03d3f6b3428c941c1974dd33705237a7 9545834b14f4f90f664261590e8cc42dfdafca11 966e6e16c24569b941b77be5cbfce3c627395083 9885f23efbb985e06b09ef13d539bf3b6c18691c 9bf5ab6457587253858885394eb8025e50241f30 a2d1714f2948420dd19c8164ff14c93931ae340c b9e36ac7516566589b8ee3c9773727020b04af6a c0ee4ddae85f5dcbef8c0a36ce5e85f588deda0c c82dd1c279639e46c0ee4aafe73411183e9f65a5 c85fa4c7ba6ebc8336555bdbb39bc14f1af63390 cb26d526649eae7ecc051f87321021ffa86cd64c ce509160f03056574d99380e58a0808ffe7d3f48 d317392193334809df6f89ad4cffe26ab9cba47e d3944aec5890c7110aa13b9a448bda088d90f649 dfcd5f2b420d93c4374be2b3db05c20134e71776 f17d4f63a31277f3d394dd93b8740d3e54512875
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lrwxrwxrwx root/root 0 2018-06-26 01:39 ./usr/share/doc/bali-phy-dbgsym -> bali-phy
bali-phy_3.2+dfsg-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 4060236 bytes: control archive=10724 bytes.
1131 bytes, 21 lines control
34230 bytes, 396 lines md5sums
Package: bali-phy
Version: 3.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 20741
Depends: libboost-chrono1.62.0, libboost-filesystem1.62.0, libboost-program-options1.62.0, libboost-random1.62.0, libboost-system1.62.0, libc6 (>= 2.23), libcairo2 (>= 1.4.10), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), perl:any
Recommends: r-base, gnuplot
Suggests: figtree, seaview
Section: science
Priority: optional
Homepage: http://www.bali-phy.org
Description: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
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drwxr-xr-x root/root 0 2018-06-26 01:39 ./usr/lib/bali-phy/
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-rw-r--r-- root/root 95648 2018-06-26 01:39 ./usr/lib/bali-phy/Distribution.so
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-rw-r--r-- root/root 46496 2018-06-26 01:39 ./usr/lib/bali-phy/MCMC.so
-rw-r--r-- root/root 54688 2018-06-26 01:39 ./usr/lib/bali-phy/Modifiables.so
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-rw-r--r-- root/root 103840 2018-06-26 01:39 ./usr/lib/bali-phy/PopGen.so
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-rw-r--r-- root/root 30112 2018-06-26 01:39 ./usr/lib/bali-phy/Range.so
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-rw-r--r-- root/root 71072 2018-06-26 01:39 ./usr/lib/bali-phy/Vector.so
drwxr-xr-x root/root 0 2018-06-26 01:39 ./usr/lib/bali-phy/functions/
drwxr-xr-x root/root 0 2018-06-26 01:39 ./usr/lib/bali-phy/functions/Frequencies/
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drwxr-xr-x root/root 0 2018-06-26 01:39 ./usr/lib/bali-phy/functions/Rates/
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-rw-r--r-- root/root 553 2018-06-26 01:39 ./usr/share/man/man1/bp-analyze.1.gz
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-rw-r--r-- root/root 1000 2018-06-26 01:39 ./usr/share/man/man1/draw-tree.1.gz
-rw-r--r-- root/root 703 2018-06-26 01:39 ./usr/share/man/man1/mctree-mean-lengths.1.gz
-rw-r--r-- root/root 445 2018-06-26 01:39 ./usr/share/man/man1/model_P.1.gz
-rw-r--r-- root/root 481 2018-06-26 01:39 ./usr/share/man/man1/pickout.1.gz
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-rw-r--r-- root/root 505 2018-06-26 01:39 ./usr/share/man/man1/stats-select.1.gz
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-rw-r--r-- root/root 707 2018-06-26 01:39 ./usr/share/man/man1/tree-mean-lengths.1.gz
-rw-r--r-- root/root 455 2018-06-26 01:39 ./usr/share/man/man1/tree-tool.1.gz
-rw-r--r-- root/root 879 2018-06-26 01:39 ./usr/share/man/man1/trees-bootstrap.1.gz
-rw-r--r-- root/root 914 2018-06-26 01:39 ./usr/share/man/man1/trees-consensus.1.gz
-rw-r--r-- root/root 911 2018-06-26 01:39 ./usr/share/man/man1/trees-distances.1.gz
-rw-r--r-- root/root 623 2018-06-26 01:39 ./usr/share/man/man1/trees-to-SRQ.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 133976
Build-Time: 3316
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 945
Job: bali-phy_3.2+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 4313
Source-Version: 3.2+dfsg-1
Space: 133976
Status: successful
Version: 3.2+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-06-28T06:15:15Z
Build needed 01:11:53, 133976k disc space