Build log for bali-phy (3.1.5+dfsg-1) on armhf

bali-phy → 3.1.5+dfsg-1 → armhf → 2018-06-16 08:19:22

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| bali-phy 3.1.5+dfsg-1 (armhf)                Sat, 16 Jun 2018 06:53:02 +0000 |
+==============================================================================+

Package: bali-phy
Version: 3.1.5+dfsg-1
Source Version: 3.1.5+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-5a5abd9e-a526-4455-9cee-8751f48d2e3c' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.4 MB in 29s (820 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bali-phy.git
Please use:
git clone https://salsa.debian.org/med-team/bali-phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1267 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bali-phy 3.1.5+dfsg-1 (dsc) [2199 B]
Get:2 http://172.17.0.1/private buster-staging/main bali-phy 3.1.5+dfsg-1 (tar) [1262 kB]
Get:3 http://172.17.0.1/private buster-staging/main bali-phy 3.1.5+dfsg-1 (diff) [3164 B]
Fetched 1267 kB in 0s (2549 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-b45nSC/bali-phy-3.1.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-b45nSC' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Hj94Dg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Hj94Dg/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (3258 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 50 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (39.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
Filtered Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Sources [574 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ Packages [654 B]
Fetched 2561 B in 1s (3953 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
  libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
  libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
  libboost-filesystem1.62-dev libboost-filesystem1.62.0
  libboost-program-options-dev libboost-program-options1.62-dev
  libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
  libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
  libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
  libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
  libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
  libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
  libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1
  libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev
  libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
  libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev
  libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson
  mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config
  po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
  python3.6 python3.6-minimal ucf uuid-dev x11-common x11proto-core-dev
  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libboost-doc libboost1.62-doc libboost-atomic1.62-dev
  libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-graph1.62-dev libboost-graph-parallel1.62-dev
  libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
  libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-python1.62-dev libboost-regex1.62-dev
  libboost-serialization1.62-dev libboost-signals1.62-dev
  libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev
  libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev
  libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc libmrpt-dev
  libglib2.0-doc libice-doc libsm-doc libtool-doc gfortran
  | fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less
  www-browser texlive-latex-recommended texlive-xetex texlive-luatex
  pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl
  python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
  binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs
  libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
  libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
  libboost-filesystem1.62-dev libboost-filesystem1.62.0
  libboost-program-options-dev libboost-program-options1.62-dev
  libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
  libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
  libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
  libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
  libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
  libharfbuzz0b libice-dev libice6 libicu-le-hb0 libicu60 liblua5.1-0
  libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1
  libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev
  libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2
  libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev
  libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson
  mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config
  po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
  python3.6 python3.6-minimal sbuild-build-depends-bali-phy-dummy ucf uuid-dev
  x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
  xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 128 newly installed, 0 to remove and 50 not upgraded.
Need to get 62.0 MB/65.5 MB of archives.
After this operation, 348 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Hj94Dg/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6~rc1-1 [565 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6~rc1-1 [1384 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6~rc1-1 [1637 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6~rc1-1 [234 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-2 [20.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-2 [12.0 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.2 [994 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5.1 [7003 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62.0 armhf 1.62.0+dfsg-5.1 [32.5 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62.0 armhf 1.62.0+dfsg-5.1 [36.1 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62-dev armhf 1.62.0+dfsg-5.1 [37.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libboost-chrono-dev armhf 1.62.0.1+b8 [4330 B]
Get:48 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:49 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62.0 armhf 1.62.0+dfsg-5.1 [58.7 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62-dev armhf 1.62.0+dfsg-5.1 [33.6 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62-dev armhf 1.62.0+dfsg-5.1 [66.6 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem-dev armhf 1.62.0.1+b8 [3732 B]
Get:53 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62.0 armhf 1.62.0+dfsg-5.1 [136 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62-dev armhf 1.62.0+dfsg-5.1 [180 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libboost-program-options-dev armhf 1.62.0.1+b8 [3716 B]
Get:56 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62.0 armhf 1.62.0+dfsg-5.1 [35.3 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62-dev armhf 1.62.0+dfsg-5.1 [35.2 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libboost-random-dev armhf 1.62.0.1+b8 [3706 B]
Get:59 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libcairo-gobject2 armhf 1.15.10-3 [101 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.15.10-3 [129 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.1 [91.3 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.0-5 [922 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:77 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13-1 [168 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.5-1 [754 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:81 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.34.0-2 [469 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13-1 [110 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13-1 [99.5 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5-4 [79.0 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5-4 [144 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.15.10-3 [597 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.4-4 [841 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1 [83.3 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-common all 2.1.0~beta3+dfsg-5.1 [46.7 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-2 armhf 2.1.0~beta3+dfsg-5.1 [191 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf ninja-build armhf 1.8.2-1 [78.8 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf meson all 0.46.1-1 [231 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf nlohmann-json-dev all 2.1.1-1.1 [395 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf pandoc-data all 1.19.2.4~dfsg-1 [236 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf pandoc armhf 1.19.2.4~dfsg-1+b2 [8599 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8.1.0-3+rpi1 linux-libc-dev_4.16.5-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.8-2 dbus-user-session_1.12.8-2 debconf_1.5.66 debhelper_11.3.2 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.041-2 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8.1.0-3+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8.1.0-3+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-15+rpi1 libblkid1_2.32-0.1 libboost-chrono-dev_1.62.0.1+b8 libboost-chrono1.62-dev_1.62.0+dfsg-5.1 libboost-chrono1.62.0_1.62.0+dfsg-5.1 libboost-dev_1.62.0.1+b8 libboost-filesystem-dev_1.62.0.1+b8 libboost-filesystem1.62-dev_1.62.0+dfsg-5.1 libboost-filesystem1.62.0_1.62.0+dfsg-5.1 libboost-program-options-dev_1.62.0.1+b8 libboost-program-options1.62-dev_1.62.0+dfsg-5.1 libboost-program-options1.62.0_1.62.0+dfsg-5.1 libboost-random-dev_1.62.0.1+b8 libboost-random1.62-dev_1.62.0+dfsg-5.1 libboost-random1.62.0_1.62.0+dfsg-5.1 libboost-system-dev_1.62.0.1+b8 libboost-system1.62-dev_1.62.0+dfsg-5.1 libboost-system1.62.0_1.62.0+dfsg-5.1 libboost1.62-dev_1.62.0+dfsg-5.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcairo-gobject2_1.15.10-3 libcairo-script-interpreter2_1.15.10-3 libcairo2_1.15.10-3 libcairo2-dev_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3+rpi1 libcilkrts5_7.3.0-12 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libeigen3-dev_3.3.4-4 libelf1_0.170-0.4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-2 libfontconfig1_2.13.0-5 libfontconfig1-dev_2.13.0-5 libfreetype6_2.8.1-2 libfreetype6-dev_2.8.1-2 libgcc-7-dev_7.3.0-12 libgcc1_1:8.1.0-3+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 libglib2.0-dev-bin_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-3+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.7.6-1+b1 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblocale-gettext-perl_1.07-3+b2 liblua5.1-0_5.1.5-8.1 libluajit-5.1-2_2.1.0~beta3+dfsg-5.1 libluajit-5.1-common_2.1.0~beta3+dfsg-5.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-3 libnss-systemd_238-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.24_5.24.1-4 libperl5.26_5.26.2-5 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-1 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.6~rc1-1 libpython3.6-stdlib_3.6.6~rc1-1 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-2 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32-0.1 libsqlite3-0_3.23.1-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-12 libstdc++6_8.1.0-3+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-12 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-render0-dev_1.13-1 libxcb-shm0_1.13-1 libxcb-shm0-dev_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-7 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.1.7-2 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.5-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 meson_0.46.1-1 mime-support_3.60 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.5-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1-1 netbase_5.4 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1.1 openssl_1.1.0h-4 pandoc_1.19.2.4~dfsg-1+b2 pandoc-data_1.19.2.4~dfsg-1 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-5 perl-base_5.26.2-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-1 python3_3.6.5-3 python3-distutils_3.6.5-4 python3-lib2to3_3.6.5-4 python3-minimal_3.6.5-3 python3.6_3.6.6~rc1-1 python3.6-minimal_3.6.6~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 util-linux_2.31.1-0.5 uuid-dev_2.32-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jun 14 10:23:48 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.1.5+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.1.5+dfsg
dpkg-source: info: unpacking bali-phy_3.1.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.1.5+dfsg-1.debian.tar.xz
dpkg-source: info: applying test-python3

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-5a5abd9e-a526-4455-9cee-8751f48d2e3c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.1.5+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build bali-phy-3.1.5+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem=meson
   dh_auto_clean -O--buildsystem=meson
   dh_clean -O--buildsystem=meson
 debian/rules build-arch
dh build-arch --buildsystem=meson
   dh_update_autotools_config -a -O--buildsystem=meson
   dh_autoreconf -a -O--buildsystem=meson
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.1.5+dfsg'
dh_auto_configure -- -Dextra-tools=false
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf -Dextra-tools=false
The Meson build system
Version: 0.46.1
Source dir: /<<BUILDDIR>>/bali-phy-3.1.5+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Native C compiler: cc (gcc 7.3.0 "cc (Raspbian 7.3.0-12) 7.3.0")
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Native C++ compiler: c++ (gcc 7.3.0 "c++ (Raspbian 7.3.0-12) 7.3.0")
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Build machine cpu family: arm
Build machine cpu: armv7l
Has header "sys/resource.h": YES
Has header "fenv.h": YES
Checking for function "log2": YES
Checking for function "feenableexcept": YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES
Found pkg-config: /usr/bin/pkg-config (0.29)
Native dependency cairo found: YES 1.15.10
Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.62
Native dependency eigen3 found: YES 3.3.4
Has header "nlohmann/json.hpp": YES
Library dl found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/tests/run-tests.py found: YES (/<<BUILDDIR>>/bali-phy-3.1.5+dfsg/tests/run-tests.py)
Program /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/testiphy/testiphy found: NO
Build targets in project: 74
Found ninja-1.8.2 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.1.5+dfsg'
   dh_auto_build -a -O--buildsystem=meson
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/245] /usr/bin/python3 /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h]  (%cd)'
[2/245] c++ -Isrc/src@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math  -MD -MQ 'src/src@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/src@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/src@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[3/245] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/src@@libsums@sta/computation_machine_sums.cc.o'
[4/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/util.cc.o' -MF 'src/src@@bali-phy@sta/util.cc.o.d' -o 'src/src@@bali-phy@sta/util.cc.o' -c ../src/util.cc
[5/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/io.cc.o' -MF 'src/src@@bali-phy@sta/io.cc.o.d' -o 'src/src@@bali-phy@sta/io.cc.o' -c ../src/io.cc
[6/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/src@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[7/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[8/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/src@@bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[9/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[10/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tree_tree.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[11/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/rng.cc.o' -MF 'src/src@@bali-phy@sta/rng.cc.o.d' -o 'src/src@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc
../src/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
      s <<= bits_per_read;
            ^~~~~~~~~~~~~
[12/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[13/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -MF 'src/src@@bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/src@@bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[14/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/src@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/src@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
                 from /usr/include/c++/7/algorithm:62,
                 from /usr/include/c++/7/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from /usr/include/c++/7/valarray:38,
                 from ../src/tools/statistics.H:24,
                 from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
[15/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[16/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/alignment_load.cc.o' -MF 'src/src@@bali-phy@sta/alignment_load.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[17/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[18/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_partition.cc.o' -MF 'src/src@@bali-phy@sta/tools_partition.cc.o.d' -o 'src/src@@bali-phy@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[19/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[20/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/util-random.cc.o' -MF 'src/src@@bali-phy@sta/util-random.cc.o.d' -o 'src/src@@bali-phy@sta/util-random.cc.o' -c ../src/util-random.cc
[21/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -MF 'src/src@@bali-phy@sta/tree_randomtree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[22/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -MF 'src/src@@bali-phy@sta/tools_tree-dist.cc.o.d' -o 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[23/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -MF 'src/src@@bali-phy@sta/tools_parsimony.cc.o.d' -o 'src/src@@bali-phy@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[24/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/setup.cc.o' -MF 'src/src@@bali-phy@sta/setup.cc.o.d' -o 'src/src@@bali-phy@sta/setup.cc.o' -c ../src/setup.cc
[25/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_findroot.cc.o' -MF 'src/src@@bali-phy@sta/tools_findroot.cc.o.d' -o 'src/src@@bali-phy@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[26/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -MF 'src/src@@bali-phy@sta/tools_stats-table.cc.o.d' -o 'src/src@@bali-phy@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
[27/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_optimize.cc.o' -MF 'src/src@@bali-phy@sta/tools_optimize.cc.o.d' -o 'src/src@@bali-phy@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[28/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_mctree.cc.o' -MF 'src/src@@bali-phy@sta/tools_mctree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[29/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -MF 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o.d' -o 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[30/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/n_indels.cc.o' -MF 'src/src@@bali-phy@sta/n_indels.cc.o.d' -o 'src/src@@bali-phy@sta/n_indels.cc.o' -c ../src/n_indels.cc
[31/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[32/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[33/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[34/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/src@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/src@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[35/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[36/245] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[37/245] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/src@@bali-phy@sta/io.cc.o' 'src/src@@bali-phy@sta/util.cc.o' 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' 'src/src@@bali-phy@sta/tree_tree.cc.o' 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' 'src/src@@bali-phy@sta/sequence_sequence.cc.o' 'src/src@@bali-phy@sta/tree_tree-util.cc.o' 'src/src@@bali-phy@sta/tools_read-trees.cc.o' 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/src@@bali-phy@sta/rng.cc.o' 'src/src@@bali-phy@sta/alignment_load.cc.o' 'src/src@@bali-phy@sta/alignment_alignment.cc.o' 'src/src@@bali-phy@sta/tools_statistics.cc.o' 'src/src@@bali-phy@sta/tools_partition.cc.o' 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/src@@bali-phy@sta/setup.cc.o' 'src/src@@bali-phy@sta/tree_randomtree.cc.o' 'src/src@@bali-phy@sta/util-random.cc.o' 'src/src@@bali-phy@sta/tools_parsimony.cc.o' 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/src@@bali-phy@sta/tools_mctree.cc.o' 'src/src@@bali-phy@sta/tools_stats-table.cc.o' 'src/src@@bali-phy@sta/tools_findroot.cc.o' 'src/src@@bali-phy@sta/tools_optimize.cc.o' 'src/src@@bali-phy@sta/tools_distance-report.cc.o' 'src/src@@bali-phy@sta/n_indels.cc.o' 'src/src@@bali-phy@sta/tools_inverse.cc.o' 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o'
[38/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/util_ptree.cc.o' -MF 'src/src@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/src@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util/ptree.H:5,
                 from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util/ptree.H:5,
                 from ../src/util/ptree.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[39/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/src@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[40/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/src@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/src@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_patterns(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/deque:66:0,
                 from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       deque<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       deque<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc:624:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
           _M_insert_aux(__pos, __first, __last, __n);
           ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/deque:64:0,
                 from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_range_insert_aux(__pos, __first, __last,
    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
          std::__iterator_category(__first));
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infixpat(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_range_insert_aux(__pos, __first, __last,
    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
          std::__iterator_category(__first));
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref desugar(const Module&, const expression_ref&, const std::set<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
      std::__iterator_category(__first));
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
      std::__iterator_category(__first));
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
[41/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/math_exponential.cc.o' -MF 'src/src@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/src@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc
[42/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[43/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/src@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[44/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[45/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/prior.cc.o' -MF 'src/src@@bali-phy@exe/prior.cc.o.d' -o 'src/src@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc
[46/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/probability_choose.cc.o' -MF 'src/src@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/src@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc
[47/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[48/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[49/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_parameters.cc.o' -MF 'src/src@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/src@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/sequence/alphabet.H:27,
                 from ../src/models/parameters.H:34,
                 from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/sequence/alphabet.H:27,
                 from ../src/models/parameters.H:34,
                 from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘Parameters::Parameters(const std::shared_ptr<module_loader>&, const std::vector<alignment>&, const SequenceTree&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const model_t&, const std::vector<int>&, const key_map_t&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[50/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/src@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/TreeInterface.H:4,
                 from ../src/models/TreeInterface.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[51/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[52/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[53/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/bali-phy.cc.o' -MF 'src/src@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/src@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc
[54/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[55/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_3way.cc.o' -MF 'src/src@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc
[56/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[57/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[58/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_2way.cc.o' -MF 'src/src@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc
[59/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tree/tree.H:31,
                 from ../src/mcmc/sample.H:23,
                 from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[60/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/src@@bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/src@@bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
[61/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_5way.cc.o' -MF 'src/src@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc
[62/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[63/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[64/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tree/tree.H:31,
                 from ../src/mcmc/sample.H:23,
                 from ../src/mcmc/sample-two-nodes.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[65/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[66/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_setup.cc.o' -MF 'src/src@@bali-phy@exe/models_setup.cc.o.d' -o 'src/src@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator {aka __gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In function ‘boost::optional<std::vector<double> > get_frequencies_from_tree(const ptree&, const alphabet&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
                 from ../src/util/ptree.H:12,
                 from ../src/models/setup.H:8,
                 from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
     basic_json(std::initializer_list<basic_json> init,
     ^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/stl_vector.h:1087:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
                 from ../src/util/ptree.H:12,
                 from ../src/models/setup.H:8,
                 from ../src/models/setup.cc:81:
/usr/include/nlohmann/json.hpp: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
         return basic_json(init, false, value_t::array);
                                                      ^
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[67/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_help.cc.o' -MF 'src/src@@bali-phy@exe/startup_help.cc.o.d' -o 'src/src@@bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc
[68/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[69/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/probability_probability.cc.o' -MF 'src/src@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/src@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc
[70/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_model.cc.o' -MF 'src/src@@bali-phy@exe/models_model.cc.o.d' -o 'src/src@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util/ptree.H:5,
                 from ../src/models/model.cc:24:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> model_parameter_expressions(const Model&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[71/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tree/tree.H:31,
                 from ../src/mcmc/sample.H:23,
                 from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/tree/tree.H:31,
                 from ../src/mcmc/sample.H:23,
                 from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<T> spr_info::convert_to_vector(const std::map<tree_edge, U>&) const [with U = log_double_t]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[72/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/myexception.cc.o' -MF 'src/src@@bali-phy@exe/myexception.cc.o.d' -o 'src/src@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc
[73/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/math_pow2.cc.o' -MF 'src/src@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/src@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc
[74/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/monitor.cc.o' -MF 'src/src@@bali-phy@exe/monitor.cc.o.d' -o 'src/src@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc
../src/monitor.cc: In function ‘void report_mem()’:
../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
   system(cmd.str().c_str());
   ~~~~~~^~~~~~~~~~~~~~~~~~~
[75/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/src@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[76/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[77/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/n_indels2.cc.o' -MF 'src/src@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/src@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc
[78/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[79/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/src@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[80/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[81/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/version.cc.o' -MF 'src/src@@bali-phy@exe/version.cc.o.d' -o 'src/src@@bali-phy@exe/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
     s<<__DATE__<<" "<<__TIME__;
        ^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
     s<<__DATE__<<" "<<__TIME__;
                       ^~~~~~~~
[82/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/timer_stack.cc.o' -MF 'src/src@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/src@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc
[83/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[84/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/AIS.H:4,
                 from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/mcmc/mcmc.H:35,
                 from ../src/mcmc/AIS.H:4,
                 from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[85/245] c++ -Isrc/src@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/src@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/src@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc
[86/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_operator.cc.o' -MF 'src/src@@bali-phy@exe/computation_operator.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operator.cc.o' -c ../src/computation/operator.cc
[87/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[88/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[89/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
[90/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[91/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:239:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
 expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
 ^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[92/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/apply.H:4,
                 from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/expression/expression_ref.H:4,
                 from ../src/computation/expression/apply.H:4,
                 from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[93/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[94/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/expression/indexify.H:4,
                 from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<dummy>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[95/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const std::vector<std::vector<std::pair<dummy, expression_ref> > >&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/dummy.H:4,
                 from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[96/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[97/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref block_case(const std::vector<expression_ref>&, const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
      std::__iterator_category(__first));
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
      std::__iterator_category(__first));
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref case_expression(const expression_ref&, const expression_ref&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref def_function(const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[98/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/trim.H:4,
                 from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[99/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/expression/lambda.H:4,
                 from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref get_list(const std::vector<T>&) [with T = expression_ref]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_ref_vector_from_list(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/expression/list.H:4,
                 from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[101/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -c ../src/computation/expression/dummy.cc
[102/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_computation.cc.o' -MF 'src/src@@bali-phy@exe/computation_computation.cc.o.d' -o 'src/src@@bali-phy@exe/computation_computation.cc.o' -c ../src/computation/computation.cc
[103/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[104/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/src@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/preprocess.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[105/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc
[106/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/7/map:60:0,
                 from ../src/util.H:37,
                 from ../src/object.H:7,
                 from ../src/computation/machine/graph_register.H:7,
                 from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from ../src/util.H:37,
                 from ../src/object.H:7,
                 from ../src/computation/machine/graph_register.H:7,
                 from ../src/computation/machine/show_graph.cc:2:
/usr/include/c++/7/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, expression_ref> >}’ changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
[107/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_model_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -c ../src/computation/model_expression.cc
[108/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_module.cc.o' -MF 'src/src@@bali-phy@exe/computation_module.cc.o.d' -o 'src/src@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc
In file included from /usr/include/c++/7/set:60:0,
                 from ../src/computation/module.cc:1:
/usr/include/c++/7/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >; _Key = dummy; _Val = std::pair<const dummy, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const dummy, expression_ref> >; _Compare = std::less<dummy>; _Alloc = std::allocator<std::pair<const dummy, expression_ref> >]’:
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h:2447:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
                 from ../src/computation/module.H:5,
                 from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_map.h: In member function ‘void Module::import_small_decls(const Program&)’:
/usr/include/c++/7/bits/stl_map.h:887:4: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<std::pair<const dummy, expression_ref> >’ changed in GCC 7.1
  { _M_t._M_insert_unique(__first, __last); }
    ^~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/module.H:7,
                 from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/module.H:7,
                 from ../src/computation/module.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::__cxx11::string&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Module::add_impdecl(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[109/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator {aka __gnu_cxx::__normal_iterator<closure*, std::vector<closure> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/machine/graph_register.H:5,
                 from ../src/computation/machine/evaluate.cc:5:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void reg_heap::incremental_evaluate_from_call(int, closure&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[110/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc
[111/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc
[112/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_operations.cc.o' -MF 'src/src@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/operations.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[113/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_context.cc.o' -MF 'src/src@@bali-phy@exe/computation_context.cc.o.d' -o 'src/src@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc
[114/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_closure.cc.o' -MF 'src/src@@bali-phy@exe/computation_closure.cc.o.d' -o 'src/src@@bali-phy@exe/computation_closure.cc.o' -c ../src/computation/closure.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/util.H:31,
                 from ../src/object.H:7,
                 from ../src/computation/closure.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[115/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_loader.cc.o' -MF 'src/src@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/src@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc
[116/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' -c ../src/computation/optimization/let-float.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref move_lets(bool, expression_ref, std::vector<std::pair<dummy, expression_ref> >&, const std::set<dummy>&, const std::set<dummy>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/optimization/let-float.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[117/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/probability/choose.H:23,
                 from ../src/mcmc/sample-tri.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t, std::allocator<log_double_t> >::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void sample_A3_multi_calculation::run_dp()’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t, std::allocator<log_double_t> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[118/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_program.cc.o' -MF 'src/src@@bali-phy@exe/computation_program.cc.o.d' -o 'src/src@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/program.H:4,
                 from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator {aka __gnu_cxx::__normal_iterator<Module*, std::vector<Module> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/program.H:4,
                 from ../src/computation/program.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[119/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_files.cc.o' -MF 'src/src@@bali-phy@exe/startup_files.cc.o.d' -o 'src/src@@bali-phy@exe/startup_files.cc.o' -c ../src/startup/files.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from /usr/include/boost/filesystem/path_traits.hpp:26,
                 from /usr/include/boost/filesystem/path.hpp:25,
                 from /usr/include/boost/filesystem/operations.hpp:25,
                 from ../src/startup/files.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[120/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/src@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -c ../src/startup/A-T-model.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/startup/A-T-model.H:4,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/startup/A-T-model.H:4,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/startup/A-T-model.H:4,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
                 from ../src/models/model.H:42,
                 from ../src/models/parameters.H:36,
                 from ../src/startup/A-T-model.H:10,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
     basic_json(std::initializer_list<basic_json> init,
     ^~~~~~~~~~
/usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/startup/A-T-model.H:4,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&, const Rules&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../src/util/json.hh:3:0,
                 from ../src/models/model.H:42,
                 from ../src/models/parameters.H:36,
                 from ../src/startup/A-T-model.H:10,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
         return basic_json(init, false, value_t::array);
                                                      ^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
         return basic_json(init, false, value_t::array);
                                                      ^
/usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
         return basic_json(init, false, value_t::array);
                                                      ^
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/startup/A-T-model.H:4,
                 from ../src/startup/A-T-model.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator {aka __gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[121/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/src@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/src@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc
[122/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_system.cc.o' -MF 'src/src@@bali-phy@exe/startup_system.cc.o.d' -o 'src/src@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc
[123/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_rules.cc.o' -MF 'src/src@@bali-phy@exe/models_rules.cc.o.d' -o 'src/src@@bali-phy@exe/models_rules.cc.o' -c ../src/models/rules.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/rules.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[124/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_parse.cc.o' -MF 'src/src@@bali-phy@exe/models_parse.cc.o.d' -o 'src/src@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse_type(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, ptree>*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘ptree parse(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/models/parse.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[125/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/src@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc
[126/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_unification.cc.o' -MF 'src/src@@bali-phy@exe/models_unification.cc.o.d' -o 'src/src@@bali-phy@exe/models_unification.cc.o' -c ../src/models/unification.cc
[127/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_apply(const simplifier_options&, expression_ref, const substitution&, in_scope_set&, inline_context)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref rebuild_case(const simplifier_options&, const expression_ref&, const substitution&, in_scope_set&, const inline_context&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/simplifier.cc:4:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[128/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/models_translate.cc.o' -MF 'src/src@@bali-phy@exe/models_translate.cc.o.d' -o 'src/src@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc
[129/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_24a754d039cb9f07d2d0e1c20b50abca6a749890.dat
[130/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/startup_paths.cc.o' -MF 'src/src@@bali-phy@exe/startup_paths.cc.o.d' -o 'src/src@@bali-phy@exe/startup_paths.cc.o' -c ../src/startup/paths.cc
[131/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/inliner.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context(expression_ref, inline_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[132/245] c++ -Isrc/builtins/src@builtins@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -MF 'src/builtins/src@builtins@@Array@sha/Array.cc.o.d' -o 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc
[133/245] c++  -o src/builtins/Array.so 'src/builtins/src@builtins@@Array@sha/Array.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[134/245] c++ -Isrc/builtins/src@builtins@@Data@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -MF 'src/builtins/src@builtins@@Data@sha/Data.cc.o.d' -o 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/Data.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[135/245] c++  -o src/builtins/Data.so 'src/builtins/src@builtins@@Data@sha/Data.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[136/245] c++ -Isrc/builtins/src@builtins@@Alphabet@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/../util.H:31,
                 from ../src/builtins/../object.H:7,
                 from ../src/builtins/../computation/computation.H:4,
                 from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[137/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<dummy, expression_ref>&}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/computation/operations.H:4,
                 from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<dummy, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<dummy>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<dummy> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[138/245] c++  -o src/builtins/Alphabet.so 'src/builtins/src@builtins@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[139/245] c++ -Isrc/builtins/src@builtins@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -MF 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc
[140/245] c++  -o src/builtins/Pair.so 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[141/245] c++ -Isrc/builtins/src@builtins@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/../util.H:31,
                 from ../src/builtins/../object.H:7,
                 from ../src/builtins/../computation/computation.H:4,
                 from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/builtins/../util.H:31,
                 from ../src/builtins/../object.H:7,
                 from ../src/builtins/../computation/computation.H:4,
                 from ../src/builtins/Prelude.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_vector_from_list(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[142/245] c++  -o src/builtins/Prelude.so 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[143/245] c++ -Isrc/builtins/src@builtins@@Modifiables@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc
[144/245] c++  -o src/builtins/Modifiables.so 'src/builtins/src@builtins@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[145/245] c++ -Isrc/builtins/src@builtins@@Alignment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc
[146/245] c++  -o src/builtins/Alignment.so 'src/builtins/src@builtins@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[147/245] c++ -Isrc/builtins/src@builtins@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/PopGen.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[148/245] c++  -o src/builtins/PopGen.so 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[149/245] c++ -Isrc/builtins/src@builtins@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -MF 'src/builtins/src@builtins@@Range@sha/Range.cc.o.d' -o 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc
[150/245] c++  -o src/builtins/Range.so 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[151/245] c++ -Isrc/builtins/src@builtins@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/Distribution.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/builtins/Distribution.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_CRP_density(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_sample_categorical(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/Distribution.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/builtins/Distribution.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/Distribution.cc:3:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[152/245] c++  -o src/builtins/Distribution.so 'src/builtins/src@builtins@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[153/245] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@bali-phy@exe/parser_parse.cc.o' -MF 'src/src@@bali-phy@exe/parser_parse.cc.o.d' -o 'src/src@@bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool boost::spirit::qi::sequence_base<Derived, Elements>::parse_impl(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&, mpl_::false_) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Derived = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >; Elements = boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::clear>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::plus<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::fusion::nil_> > >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:114:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
  _M_realloc_insert(begin() + (__position - cbegin()), __x);
  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/spirit/home/support/string_traits.hpp:16:0,
                 from /usr/include/boost/spirit/home/support/nonterminal/expand_arg.hpp:20,
                 from /usr/include/boost/spirit/home/support/context.hpp:18,
                 from /usr/include/boost/spirit/home/qi/domain.hpp:18,
                 from /usr/include/boost/spirit/home/qi/meta_compiler.hpp:15,
                 from /usr/include/boost/spirit/home/qi/action/action.hpp:14,
                 from /usr/include/boost/spirit/home/qi/action.hpp:14,
                 from /usr/include/boost/spirit/home/qi.hpp:14,
                 from /usr/include/boost/spirit/include/qi.hpp:16,
                 from ../src/parser/parse.cc:17:
/usr/include/boost/spirit/home/support/container.hpp: In member function ‘bool boost::spirit::qi::list<Left, Right>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = std::vector<expression_ref>; Left = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >; Right = boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
             c.insert(c.end(), val);
             ^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
             c.insert(c.end(), val);
             ^
/usr/include/boost/spirit/home/support/container.hpp: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::list<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::local_variable<0> >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
             c.insert(c.end(), val);
             ^
/usr/include/boost/spirit/home/support/container.hpp:292:13: note: parameter passing for argument of type ‘std::vector<expression_ref>::const_iterator {aka __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
             c.insert(c.end(), val);
             ^
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = const boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<AST_node> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<std::__cxx11::basic_string<char> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> > >, 3> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::detail::expect_function<Iterator, Context, Skipper, Exception>::operator()(const Component&) const [with Component = boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >; Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Exception = boost::spirit::qi::expectation_failure<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > > >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::kleene<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::locals<std::vector<expression_ref> >, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::optional<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int> >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In static member function ‘static R boost::detail::function::function_obj_invoker4<FunctionObj, R, T0, T1, T2, T3>::invoke(boost::detail::function::function_buffer&, T0, T1, T2, T3) [with FunctionObj = boost::spirit::qi::detail::parser_binder<boost::spirit::qi::expect<boost::fusion::cons<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::fusion::cons<boost::spirit::qi::optional<boost::spirit::qi::action<boost::spirit::lex::reference<const boost::spirit::lex::token_def<>, unsigned int>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<std::__cxx11::basic_string<char> >, 0> >, 3> > > >, boost::fusion::cons<boost::spirit::qi::sequence<boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, std::__cxx11::basic_string<char>(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::construct, boost::proto::argsns_::list2<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<Box<std::__cxx11::basic_string<char> > > >, 0>, boost::phoenix::actor<boost::spirit::argument<0> > >, 2> > >, 3> > >, boost::fusion::cons<boost::spirit::qi::action<boost::spirit::qi::eps_parser, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::assign, boost::proto::argsns_::list2<boost::proto::exprns_::expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::spirit::attribute<0> >, 0>, boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::tag::new_, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::detail::target<expression> >, 0>, boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<AST_node>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> > >, 3> > >, 2> > >, boost::fusion::nil_> > >, boost::fusion::nil_> > > >, mpl_::bool_<false> >; R = bool; T0 = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T1 = const boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >&; T2 = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >&; T3 = const boost::spirit::unused_type&]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/parser/parse.H:4,
                 from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >; Context = boost::spirit::context<boost::fusion::cons<expression_ref&, boost::fusion::nil_>, boost::fusion::vector<std::vector<expression_ref, std::allocator<expression_ref> > > >; Skipper = boost::spirit::unused_type; Attribute = boost::spirit::unused_type; Subject = boost::spirit::qi::reference<const boost::spirit::qi::rule<boost::spirit::lex::lexertl::iterator<boost::spirit::lex::lexertl::functor<boost::spirit::lex::lexertl::position_token<boost::spirit::basic_istream_iterator<char>, boost::mpl::vector<int, char, std::__cxx11::basic_string<char> > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator<char>, mpl_::bool_<true>, mpl_::bool_<true> > >, expression_ref(), boost::spirit::unused_type, boost::spirit::unused_type, boost::spirit::unused_type> >; Action = boost::phoenix::actor<boost::proto::exprns_::basic_expr<boost::phoenix::detail::tag::function_eval, boost::proto::argsns_::list3<boost::proto::exprns_::basic_expr<boost::proto::tagns_::tag::terminal, boost::proto::argsns_::term<boost::phoenix::stl::push_back>, 0>, boost::phoenix::actor<boost::spirit::local_variable<0> >, boost::phoenix::actor<boost::spirit::argument<0> > >, 3> >]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[154/245] c++  -o src/bali-phy 'src/src@@bali-phy@exe/parser_parse.cc.o' 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/src@@bali-phy@exe/parser_desugar.cc.o' 'src/src@@bali-phy@exe/substitution_substitution.cc.o' 'src/src@@bali-phy@exe/util_ptree.cc.o' 'src/src@@bali-phy@exe/mcmc_moves.cc.o' 'src/src@@bali-phy@exe/math_exponential.cc.o' 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' 'src/src@@bali-phy@exe/models_parameters.cc.o' 'src/src@@bali-phy@exe/prior.cc.o' 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/src@@bali-phy@exe/probability_choose.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/src@@bali-phy@exe/bali-phy.cc.o' 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' 'src/src@@bali-phy@exe/dp_hmm.cc.o' 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' 'src/src@@bali-phy@exe/dp_dp-array.cc.o' 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/src@@bali-phy@exe/dp_3way.cc.o' 'src/src@@bali-phy@exe/dp_2way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/src@@bali-phy@exe/imodel_imodel.cc.o' 'src/src@@bali-phy@exe/dp_5way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/src@@bali-phy@exe/models_setup.cc.o' 'src/src@@bali-phy@exe/startup_help.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/src@@bali-phy@exe/probability_probability.cc.o' 'src/src@@bali-phy@exe/models_model.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/src@@bali-phy@exe/monitor.cc.o' 'src/src@@bali-phy@exe/myexception.cc.o' 'src/src@@bali-phy@exe/math_pow2.cc.o' 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' 'src/src@@bali-phy@exe/n_indels2.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' 'src/src@@bali-phy@exe/version.cc.o' 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/src@@bali-phy@exe/timer_stack.cc.o' 'src/src@@bali-phy@exe/mcmc_setup.cc.o' 'src/src@@bali-phy@exe/mcmc_logger.cc.o' 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' 'src/src@@bali-phy@exe/computation_operator.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/src@@bali-phy@exe/computation_expression_let.cc.o' 'src/src@@bali-phy@exe/computation_expression_case.cc.o' 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/src@@bali-phy@exe/computation_expression_list.cc.o' 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/src@@bali-phy@exe/computation_computation.cc.o' 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/src@@bali-phy@exe/computation_preprocess.cc.o' 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/src@@bali-phy@exe/computation_module.cc.o' 'src/src@@bali-phy@exe/computation_model_expression.cc.o' 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/src@@bali-phy@exe/computation_operations.cc.o' 'src/src@@bali-phy@exe/computation_loader.cc.o' 'src/src@@bali-phy@exe/computation_context.cc.o' 'src/src@@bali-phy@exe/computation_closure.cc.o' 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/src@@bali-phy@exe/computation_program.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' 'src/src@@bali-phy@exe/startup_files.cc.o' 'src/src@@bali-phy@exe/startup_loggers.cc.o' 'src/src@@bali-phy@exe/startup_system.cc.o' 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' 'src/src@@bali-phy@exe/models_rules.cc.o' 'src/src@@bali-phy@exe/models_parse.cc.o' 'src/src@@bali-phy@exe/models_translate.cc.o' 'src/src@@bali-phy@exe/models_unification.cc.o' 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/src@@bali-phy@exe/startup_paths.cc.o' 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[155/245] c++ -Isrc/builtins/src@builtins@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc
[156/245] c++  -o src/builtins/MCMC.so 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[157/245] c++ -Isrc/builtins/src@builtins@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -MF 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc
[158/245] c++  -o src/builtins/Vector.so 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[159/245] c++ -Isrc/builtins/src@builtins@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -MF 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc
[160/245] c++  -o src/builtins/SModel.so 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[161/245] c++ -Isrc/builtins/src@builtins@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -MF 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/builtins/../util.H:31,
                 from ../src/builtins/../object.H:7,
                 from ../src/builtins/../computation/computation.H:4,
                 from ../src/builtins/Environment.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[162/245] c++  -o src/builtins/Environment.so 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[163/245] c++ -Isrc/src@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@model_P@exe/tools_model_P.cc.o' -MF 'src/src@@model_P@exe/tools_model_P.cc.o.d' -o 'src/src@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/tools/model_P.cc:21:
/usr/include/c++/7/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[164/245] c++  -o src/model_P 'src/src@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[165/245] c++  -o src/stats-select 'src/src@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[166/245] c++ -Isrc/src@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc
[167/245] c++  -o src/alignment-gild 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[168/245] c++ -Isrc/builtins/src@builtins@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC  -MD -MQ 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -MF 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc
[169/245] c++  -o src/builtins/SMC.so 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group  
[170/245] c++ -Isrc/src@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@statreport@exe/tools_statreport.cc.o' -MF 'src/src@@statreport@exe/tools_statreport.cc.o.d' -o 'src/src@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/util.H:34,
                 from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
                 from /usr/include/c++/7/algorithm:62,
                 from ../src/util.H:34,
                 from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/util.H:34,
                 from ../src/tools/statreport.cc:30:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[171/245] c++  -o src/statreport 'src/src@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[172/245] c++ -Isrc/src@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc
[173/245] c++  -o src/alignment-consensus 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[174/245] c++ -Isrc/src@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc
[175/245] c++  -o src/alignment-chop-internal 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[176/245] c++ -Isrc/src@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc
[177/245] c++ -Isrc/src@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/src@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc
[178/245] c++  -o src/alignment-indices 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[179/245] c++  -o src/alignment-max 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[180/245] c++ -Isrc/src@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/src@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc
[181/245] c++  -o src/alignment-info 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[182/245] c++ -Isrc/src@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/src@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc
[183/245] c++  -o src/alignment-find 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[184/245] c++ -Isrc/src@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc
[185/245] c++  -o src/alignment-cat 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[186/245] c++ -Isrc/src@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc
[187/245] c++  -o src/alignment-translate 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[188/245] c++ -Isrc/src@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc
[189/245] c++  -o src/tree-mean-lengths 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[190/245] c++ -Isrc/src@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc
[191/245] c++  -o src/mctree-mean-lengths 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[192/245] c++ -Isrc/src@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc
[193/245] c++  -o src/trees-to-SRQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[194/245] c++ -Isrc/src@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
                 from /usr/include/c++/7/algorithm:62,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
     ^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
       std::__make_heap(__first, __middle, __comp);
       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/trees-consensus.cc:23:
/usr/include/c++/7/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[195/245] c++  -o src/trees-consensus 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[196/245] c++ -Isrc/src@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@pickout@exe/tools_pickout.cc.o' -MF 'src/src@@pickout@exe/tools_pickout.cc.o.d' -o 'src/src@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc
[197/245] c++  -o src/pickout 'src/src@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[198/245] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/src@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc
[199/245] c++ -Isrc/src@@subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@subsample@exe/tools_subsample.cc.o' -MF 'src/src@@subsample@exe/tools_subsample.cc.o.d' -o 'src/src@@subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc
[200/245] c++  -o src/subsample 'src/src@@subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[201/245] c++ -Isrc/src@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/src@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/src@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc
[202/245] c++  -o src/cut-range 'src/src@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[203/245] c++ -Isrc/src@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/src@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc
[204/245] c++  -o src/trees-distances 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[205/245] c++ -Isrc/src@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc
[206/245] c++  -o src/alignment-thin 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[207/245] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tree/tree.H:31,
                 from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<T> split(const string&, char) [with T = double]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[208/245] c++ -Isrc/src@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc
[209/245] c++  -o src/alignments-diff 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[210/245] c++  -o src/alignment-draw 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/src@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono  
[211/245] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc
[212/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_dfb2964c65e1999fb2517b178c0717d24719c97f.dat
[213/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_673e8446de281ddae9d6e4f9d7392d2abfa73e71.dat
[214/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_36c73795a5242bfbd87f7ecf565bdc0d087d2323.dat
[215/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_7635f78016fb573569e2a5dff471017121b1da2b.dat
[216/245] c++ -Isrc/src@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/src@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc
[217/245] c++  -o src/tree-tool 'src/src@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX  
[218/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9ea12471b3aade907c88a1fadbf252a9df14ab62.dat
[219/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_abf9ec2cc40a5dd4013b82804f0dc223843b623e.dat
[220/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9f289864c34d786f8904c1892a1dd52120423c10.dat
[221/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1e11152864acc297bdde499f126ae4848266b386.dat
[222/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1fdf5ddb6fc9c52931b2fe9d7680d6a8308e3518.dat
[223/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_e0ae5455cac1b524b05182c82b907626cbde94c4.dat
[224/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_d591251094c50725c0809cecdf59339d7584773a.dat
[225/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_fbffce3bfbf2babfecc4ee032f8a004f7a9eba44.dat
[226/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a42bc70fb23e3d6e4e70620f75ce49e291b4a597.dat
[227/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_e71d0b5ea075405b19ad1625a635ae7bbac1d671.dat
[228/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9937848420c3a16191e89ab3b2279140b6bf1cb6.dat
[229/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_3f52c4a4b314acc8a0acdbde2f45a7ebe30bc52d.dat
[230/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_b52490ced6a7213e69a65613723d7aced0ecf94c.dat
[231/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_c0b553926a2dac852a4a5791a93f6969ccf0c4a4.dat
[232/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_526150f8eb638f743eae5ab3a78ff5c1c61aa5c1.dat
[233/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_74f7ce6cef576b3ed0801f8725aff3304ecb90a8.dat
[234/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9466a65bf96788a987cbbfcc1a1bf609e2da813f.dat
[235/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_dd9f7d902dd0e607dfd07398137fd51d4ba2174a.dat
[236/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_40d1b3b990099fea572d4eed8aa4d45bf149f728.dat
[237/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_900c6b0d5eced0949696d0cdc14aa88ca5a843de.dat
[238/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_6f0ac11f2bb69cb5da6749e51d893dc890cde5e6.dat
[239/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_80b41e9224e2d8e3b269aee4be86e6df5135bdc7.dat
[240/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ff7a627366e3509210aa66d6c8c67fbd759c2d24.dat
[241/245] /usr/bin/python3 /usr/bin/meson --internal exe /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8d84ecf17644040256e65b2a4d333d790f33915f.dat
[242/245] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
                 from /usr/include/c++/7/algorithm:62,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[243/245] c++  -o src/trees-bootstrap 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono  
[244/245] c++ -Isrc/src@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2  -MD -MQ 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/src@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator {aka __gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >}’ changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from ../src/tools/draw-tree.cc:23:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[245/245] c++  -o src/draw-tree 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lcairo -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono  
   dh_auto_test -a -O--buildsystem=meson
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[1/4] Generating git-version.h with a custom command.
[1/2] Running all tests.
 1/29 bali-phy version                        OK       0.08 s
 2/29 bali-phy help                           OK       0.09 s
 3/29 bali-phy 5d test                        OK      14.39 s
 4/29 bali-phy 5d +A 50                       OK      73.22 s
 5/29 bali-phy 5d -A 200                      OK      54.88 s
 6/29 model_P --help                          OK       0.08 s
 7/29 statreport --help                       OK       0.10 s
 8/29 stats-select --help                     OK       0.05 s
 9/29 alignment-gild --help                   OK       0.06 s
10/29 alignment-consensus --help              OK       0.06 s
11/29 alignment-max --help                    OK       0.04 s
12/29 alignment-chop-internal --help          OK       0.08 s
13/29 alignment-indices --help                OK       0.08 s
14/29 alignment-info --help                   OK       0.07 s
15/29 alignment-cat --help                    OK       0.07 s
16/29 alignment-translate --help              OK       0.09 s
17/29 alignment-find --help                   OK       0.09 s
18/29 trees-consensus --help                  OK       0.08 s
19/29 tree-mean-lengths --help                OK       0.10 s
20/29 mctree-mean-lengths --help              OK       0.08 s
21/29 trees-to-SRQ --help                     OK       0.07 s
22/29 pickout --help                          OK       0.07 s
23/29 subsample --help                        OK       0.08 s
24/29 cut-range --help                        OK       0.07 s
25/29 trees-distances --help                  OK       0.08 s
26/29 alignment-thin --help                   OK       0.07 s
27/29 alignments-diff --help                  OK       0.07 s
28/29 tree-tool --help                        OK       0.08 s
29/29 bali-phy testsuite                      TIMEOUT 600.18 s

OK:        28
FAIL:       1
SKIP:       0
TIMEOUT:    1


The output from the failed tests:

29/29 bali-phy testsuite                      TIMEOUT 600.18 s

--- command ---
DEB_HOST_GNU_SYSTEM='linux-gnueabihf' DEB_TARGET_GNU_CPU='arm' DEB_BUILD_ARCH_BITS='32' DEB_HOST_ARCH_OS='linux' USER='buildd' CXXFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' DEB_TARGET_MULTIARCH='arm-linux-gnueabihf' DEB_BUILD_GNU_TYPE='arm-linux-gnueabihf' OBJCFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_HOST_ARCH_ABI='eabihf' DEB_BUILD_ARCH_CPU='arm' DEB_HOST_ARCH_LIBC='gnu' HOME='/sbuild-nonexistent' APT_CONFIG='/var/lib/sbuild/apt.conf' SCHROOT_CHROOT_NAME='buster-staging-armhf-sbuild' DEB_BUILD_ARCH_ENDIAN='little' LDFLAGS='-Wl,-z,relro -Wl,-z,now' DEB_TARGET_ARCH_BITS='32' SCHROOT_UID='104' MAKEFLAGS='' DEB_BUILD_GNU_SYSTEM='linux-gnueabihf' DEB_BUILD_ARCH_OS='linux' DEB_TARGET_GNU_TYPE='arm-linux-gnueabihf' DEB_TARGET_ARCH_CPU='arm' LOGNAME='root' DEB_BUILD_ARCH_LIBC='gnu' DEB_BUILD_ARCH_ABI='eabihf' DEB_CFLAGS_MAINT_APPEND='-O3 -g0' DEB_TARGET_ARCH_ENDIAN='little' DEB_HOST_ARCH='armhf' TERM='xterm' DEB_TARGET_GNU_SYSTEM='linux-gnueabihf' DEB_HOST_GNU_CPU='arm' PATH='/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' MESON_TESTTHREADS='4' DEB_TARGET_ARCH_OS='linux' MAKELEVEL='1' CFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' SCHROOT_COMMAND='dpkg-buildpackage -us -uc -mRaspbian wandboard test autobuilder <root@raspbian.org> -B -rfakeroot' SOURCE_DATE_EPOCH='1528929732' SCHROOT_SESSION_ID='buster-staging-armhf-sbuild-5a5abd9e-a526-4455-9cee-8751f48d2e3c' DEB_HOST_MULTIARCH='arm-linux-gnueabihf' FCFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong' SCHROOT_ALIAS_NAME='buster-staging-armhf-sbuild' OBJCXXFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_TARGET_ARCH_ABI='eabihf' DEB_TARGET_ARCH_LIBC='gnu' SCHROOT_USER='buildd' DEB_BUILD_OPTIONS='parallel=4' SCHROOT_GROUP='buildd' DH_INTERNAL_BUILDFLAGS='1' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' SHELL='/bin/sh' DEB_HOST_ARCH_BITS='32' DEB_BUILD_ARCH='armhf' DEB_BUILD_MAINT_OPTIONS='hardening=+all' DEB_BUILD_GNU_CPU='arm' DEB_HOST_GNU_TYPE='arm-linux-gnueabihf' DEB_HOST_ARCH_CPU='arm' DEB_RULES_REQUIRES_ROOT='binary-targets' LC_ALL='C.UTF-8' PWD='/<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf' DEB_BUILD_MULTIARCH='arm-linux-gnueabihf' FFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong' SCHROOT_GID='109' MFLAGS='' GCJFLAGS='-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg=. -fstack-protector-strong' DEB_CXXFLAGS_MAINT_APPEND='-O3 -g0' DEB_HOST_ARCH_ENDIAN='little' DEB_TARGET_ARCH='armhf' /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/tests/run-tests.py /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/src/bali-phy --package-path=/<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/src/builtins:/<<BUILDDIR>>/bali-phy-3.1.5+dfsg
-------

Full log written to /<<BUILDDIR>>/bali-phy-3.1.5+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
FAILED: meson-test 
/usr/bin/python3 -u /usr/bin/meson test --no-rebuild --print-errorlogs
ninja: build stopped: subcommand failed.
dh_auto_test: cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test returned exit code 1
debian/rules:20: recipe for target 'build-arch' failed
make: *** [build-arch] Error 1
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-06-16T08:19:10Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 4251
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 863
Job: bali-phy_3.1.5+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 5168
Source-Version: 3.1.5+dfsg-1
Space: 0
Status: failed
Version: 3.1.5+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-06-16T08:19:10Z
Build needed 00:00:00, 0k disc space
Raspbian Package Auto-Building

Build log for bali-phy (3.1.5+dfsg-1) on armhf
