bali-phy →
3.0.2+dfsg-1 →
armhf → 2018-03-27 06:47:54
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| bali-phy 3.0.2+dfsg-1 (armhf) Tue, 27 Mar 2018 06:30:30 +0000 |
+==============================================================================+
Package: bali-phy
Version: 3.0.2+dfsg-1
Source Version: 3.0.2+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-370664ad-d6c3-418d-8980-3c4952bea213' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.1 MB in 11s (2049 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at:
https://github.com/bredelings/BAli-Phy.git
Please use:
git clone https://github.com/bredelings/BAli-Phy.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1236 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bali-phy 3.0.2+dfsg-1 (dsc) [2197 B]
Get:2 http://172.17.0.1/private buster-staging/main bali-phy 3.0.2+dfsg-1 (tar) [1232 kB]
Get:3 http://172.17.0.1/private buster-staging/main bali-phy 3.0.2+dfsg-1 (diff) [2528 B]
Fetched 1236 kB in 1s (1573 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bali-phy-8ATv5Z/bali-phy-3.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bali-phy-8ATv5Z' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-m4kvPU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-m4kvPU/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-m4kvPU/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (10.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (70.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15650 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), meson (>= 0.44.1), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
Filtered Build-Depends: debhelper (>= 11), meson (>= 0.44.1), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev
dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<<BUILDDIR>>/resolver-m4kvPU/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Sources [575 B]
Get:5 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ Packages [657 B]
Fetched 2565 B in 0s (12.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bali-phy build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6
libicu57 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2
libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev
libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool
libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0
libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev
libxrender1 libyaml-0-2 m4 man-db meson mime-support ninja-build
nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal ucf x11-common x11proto-core-dev x11proto-input-dev
x11proto-kb-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools
xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-graph1.62-dev libboost-graph-parallel1.62-dev
libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-python1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev
libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev
libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc libmrpt-dev
libglib2.0-doc libice-doc libsm-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less
www-browser texlive-latex-recommended texlive-xetex texlive-luatex
pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl shared-mime-info xdg-user-dirs
libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.62-dev libboost-filesystem1.62.0
libboost-program-options-dev libboost-program-options1.62-dev
libboost-program-options1.62.0 libboost-random-dev libboost-random1.62-dev
libboost-random1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost1.62-dev libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6
libicu57 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2
libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev
libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool
libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0
libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev
libxrender1 libyaml-0-2 m4 man-db meson mime-support ninja-build
nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal sbuild-build-depends-bali-phy-dummy ucf x11-common
x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 126 newly installed, 0 to remove and 34 not upgraded.
Need to get 44.2 MB/65.0 MB of archives.
After this operation, 348 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-m4kvPU/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.2-1 [1145 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.5~rc1-1 [565 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.5~rc1-1 [1234 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.5~rc1-1 [1585 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5~rc1-1 [79.0 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5~rc1-1 [147 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.5~rc1-1 [229 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.4-1 [19.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180318 [92.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.4-1 [22.3 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.0-2 [2750 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.5 [1007 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libboost-chrono-dev armhf 1.62.0.1+b8 [4330 B]
Get:35 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:36 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62.0 armhf 1.62.0+dfsg-5 [58.2 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem1.62-dev armhf 1.62.0+dfsg-5 [66.2 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libboost-filesystem-dev armhf 1.62.0.1+b8 [3732 B]
Get:39 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62.0 armhf 1.62.0+dfsg-5 [137 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.62-dev armhf 1.62.0+dfsg-5 [178 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libboost-program-options-dev armhf 1.62.0.1+b8 [3716 B]
Get:42 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62.0 armhf 1.62.0+dfsg-5 [35.0 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libboost-random1.62-dev armhf 1.62.0+dfsg-5 [34.8 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libboost-random-dev armhf 1.62.0.1+b8 [3706 B]
Get:45 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.15.10-1 [129 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.12.6-0.1 [903 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 7.0.31-1 [728 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf x11proto-input-dev all 2.3.2-1 [158 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf x11proto-kb-dev all 1.0.7-1 [233 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13-1 [168 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.5-1 [754 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf x11proto-render-dev all 2:0.11.1-2 [20.8 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.34.0-2 [469 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13-1 [110 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13-1 [99.5 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.0-4 [2663 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.0-2 [1690 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.0-2 [1729 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.0-2 [2802 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.15.10-1 [597 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.4-4 [841 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1 [83.3 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-common all 2.1.0~beta3+dfsg-5.1 [46.7 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-2 armhf 2.1.0~beta3+dfsg-5.1 [191 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf ninja-build armhf 1.8.2-1 [78.8 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf meson all 0.45.0-1 [217 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf nlohmann-json-dev all 2.1.1-1 [395 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf pandoc-data all 1.19.2.4~dfsg-1 [236 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf pandoc armhf 1.19.2.4~dfsg-1+b2 [8599 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-7+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-11 gcc-7_7.3.0-11 libc6-dev_2.27-2+rpi1 libstdc++-7-dev_7.3.0-11 libstdc++6_8-20180218-1+rpi1 linux-libc-dev_4.15.4-1+rpi1
Package versions: adduser_3.117 apt_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4.18-1.1 binutils_2.30-7+rpi1 binutils-arm-linux-gnueabihf_2.30-7+rpi1 binutils-common_2.30-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.4 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-11 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.1.5 debianutils_4.8.4 dh-autoreconf_17 dh-python_3.20180318 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.0-1 e2fsprogs_1.44.0-1 e2fsprogs-l10n_1.44.0-1 fakeroot_1.22-2 fdisk_2.31.1-0.4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 fontconfig-config_2.12.6-0.1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.3.0-11 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 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libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.90-1+rpi1 libdrm2_2.4.90-1+rpi1 libeigen3-dev_3.3.4-4 libelf1_0.170-0.3 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.0-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0.1 libfontconfig1-dev_2.12.6-0.1 libfreetype6_2.8.1-2 libfreetype6-dev_2.8.1-2 libgcc-7-dev_7.3.0-11 libgcc1_1:8-20180218-1+rpi1 libgcrypt20_1.8.1-4 libgdbm-compat4_1.14.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-4 libglib2.0-0_2.56.0-2 libglib2.0-bin_2.56.0-2 libglib2.0-data_2.56.0-4 libglib2.0-dev_2.56.0-2 libglib2.0-dev-bin_2.56.0-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180218-1+rpi1 libgpg-error0_1.27-6 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu57_57.1-9 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblua5.1-0_5.1.5-8.1 libluajit-5.1-2_2.1.0~beta3+dfsg-5.1 libluajit-5.1-common_2.1.0~beta3+dfsg-5.1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4 libmpc3_1.1.0-1 libmpdec2_2.4.2-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnpth0_1.5-3 libnss-systemd_238-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-2 libpam0g_1.1.8-3.7 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libplymouth4_0.9.3-2 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-4 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.4-1 libpython3.6-minimal_3.6.5~rc1-1 libpython3.6-stdlib_3.6.5~rc1-1 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.31.1-0.4 libsqlite3-0_3.22.0-1 libss2_1.44.0-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.3.0-11 libstdc++6_8-20180218-1+rpi1 libsystemd0_238-2 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtool_2.4.6-2 libubsan0_7.3.0-11 libudev1_238-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-render0-dev_1.13-1 libxcb-shm0_1.13-1 libxcb-shm0-dev_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-6.1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.1.7-2 linux-base_4.5 linux-libc-dev_4.15.4-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.2-1 mawk_1.3.3-17 meson_0.45.0-1 mime-support_3.60 mount_2.31.1-0.4 multiarch-support_2.27-2+rpi1 nano_2.9.4-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1 openssl_1.1.0g-2 pandoc_1.19.2.4~dfsg-1+b2 pandoc-data_1.19.2.4~dfsg-1 passwd_1:4.5-1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-4 python3_3.6.4-1 python3-distutils_3.6.5~rc1-1 python3-lib2to3_3.6.5~rc1-1 python3-minimal_3.6.4-1 python3.6_3.6.5~rc1-1 python3.6-minimal_3.6.5~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-2 systemd-sysv_238-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 ucf_3.0038 udev_238-2 util-linux_2.31.1-0.4 x11-common_1:7.7+19 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-render-dev_2:0.11.1-2 x11proto-xext-dev_7.3.0-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Mar 11 07:03:26 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.0.2+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in /<<BUILDDIR>>/bali-phy-3.0.2+dfsg
dpkg-source: info: unpacking bali-phy_3.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.0.2+dfsg-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-370664ad-d6c3-418d-8980-3c4952bea213
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.0.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bali-phy-3.0.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules build-arch
dh build-arch --buildsystem=meson
dh_update_autotools_config -a -O--buildsystem=meson
dh_autoreconf -a -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/bali-phy-3.0.2+dfsg'
dh_auto_configure -- -Dextra-tools=false
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf -Dextra-tools=false
The Meson build system
Version: 0.45.0
Source dir: /<<BUILDDIR>>/bali-phy-3.0.2+dfsg
Build dir: /<<BUILDDIR>>/bali-phy-3.0.2+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Native C compiler: cc (gcc 7.3.0 "cc (Raspbian 7.3.0-11) 7.3.0")
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Native C++ compiler: c++ (gcc 7.3.0 "c++ (Raspbian 7.3.0-11) 7.3.0")
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Build machine cpu family: arm
Build machine cpu: armv8l
Has header "sys/resource.h": YES
Has header "fenv.h": YES
Checking for function "log2": YES
Checking for function "feenableexcept": YES
Configuring config.h using configuration
Compiler for C++ supports argument -Wno-maybe-uninitialized: YES
Found pkg-config: /usr/bin/pkg-config (0.29)
Native dependency cairo found: YES 1.15.10
Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.62
Native dependency eigen3 found: YES 3.3.4
Has header "nlohmann/json.hpp": YES
Library dl found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Build targets in project: 68
Found ninja-1.8.2 at /usr/bin/ninja
make[1]: Leaving directory '/<<BUILDDIR>>/bali-phy-3.0.2+dfsg'
dh_auto_build -a -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/235] /usr/bin/python3 /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<<BUILDDIR>>/bali-phy-3.0.2+dfsg/src @git_message@ '(.*)' /<<BUILDDIR>>/bali-phy-3.0.2+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/235] c++ -Isrc/libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/libsums@sta/computation_machine_sums.cc.o' -MF 'src/libsums@sta/computation_machine_sums.cc.o.d' -o 'src/libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc
[3/235] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/libsums@sta/computation_machine_sums.cc.o'
[4/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/util.cc.o' -MF 'src/bali-phy@sta/util.cc.o.d' -o 'src/bali-phy@sta/util.cc.o' -c ../src/util.cc
[5/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/io.cc.o' -MF 'src/bali-phy@sta/io.cc.o.d' -o 'src/bali-phy@sta/io.cc.o' -c ../src/io.cc
[6/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc
[7/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/sequence_sequence.cc.o' -MF 'src/bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc
[8/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tree_tree-util.cc.o' -MF 'src/bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc
[9/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc
[10/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tree_tree.cc.o' -MF 'src/bali-phy@sta/tree_tree.cc.o.d' -o 'src/bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc
[11/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/rng.cc.o' -MF 'src/bali-phy@sta/rng.cc.o.d' -o 'src/bali-phy@sta/rng.cc.o' -c ../src/rng.cc
../src/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow]
s <<= bits_per_read;
^~~~~~~~~~~~~
[12/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_read-trees.cc.o' -MF 'src/bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc
[13/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc
[14/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_statistics.cc.o' -MF 'src/bali-phy@sta/tools_statistics.cc.o.d' -o 'src/bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/c++/7/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[15/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/alignment_alignment-util.cc.o' -MF 'src/bali-phy@sta/alignment_alignment-util.cc.o.d' -o 'src/bali-phy@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc
[16/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/alignment_load.cc.o' -MF 'src/bali-phy@sta/alignment_load.cc.o.d' -o 'src/bali-phy@sta/alignment_load.cc.o' -c ../src/alignment/load.cc
[17/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/alignment_alignment.cc.o' -MF 'src/bali-phy@sta/alignment_alignment.cc.o.d' -o 'src/bali-phy@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc
[18/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_partition.cc.o' -MF 'src/bali-phy@sta/tools_partition.cc.o.d' -o 'src/bali-phy@sta/tools_partition.cc.o' -c ../src/tools/partition.cc
[19/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc
[20/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/util-random.cc.o' -MF 'src/bali-phy@sta/util-random.cc.o.d' -o 'src/bali-phy@sta/util-random.cc.o' -c ../src/util-random.cc
[21/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tree_randomtree.cc.o' -MF 'src/bali-phy@sta/tree_randomtree.cc.o.d' -o 'src/bali-phy@sta/tree_randomtree.cc.o' -c ../src/tree/randomtree.cc
[22/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_tree-dist.cc.o' -MF 'src/bali-phy@sta/tools_tree-dist.cc.o.d' -o 'src/bali-phy@sta/tools_tree-dist.cc.o' -c ../src/tools/tree-dist.cc
[23/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_parsimony.cc.o' -MF 'src/bali-phy@sta/tools_parsimony.cc.o.d' -o 'src/bali-phy@sta/tools_parsimony.cc.o' -c ../src/tools/parsimony.cc
[24/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/setup.cc.o' -MF 'src/bali-phy@sta/setup.cc.o.d' -o 'src/bali-phy@sta/setup.cc.o' -c ../src/setup.cc
[25/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_findroot.cc.o' -MF 'src/bali-phy@sta/tools_findroot.cc.o.d' -o 'src/bali-phy@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc
[26/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_stats-table.cc.o' -MF 'src/bali-phy@sta/tools_stats-table.cc.o.d' -o 'src/bali-phy@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc
[27/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_optimize.cc.o' -MF 'src/bali-phy@sta/tools_optimize.cc.o.d' -o 'src/bali-phy@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc
[28/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/n_indels.cc.o' -MF 'src/bali-phy@sta/n_indels.cc.o.d' -o 'src/bali-phy@sta/n_indels.cc.o' -c ../src/n_indels.cc
[29/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_distance-report.cc.o' -MF 'src/bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc
[30/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/alignment_index-matrix.cc.o' -MF 'src/bali-phy@sta/alignment_index-matrix.cc.o.d' -o 'src/bali-phy@sta/alignment_index-matrix.cc.o' -c ../src/alignment/index-matrix.cc
[31/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_mctree.cc.o' -MF 'src/bali-phy@sta/tools_mctree.cc.o.d' -o 'src/bali-phy@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc
[32/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc
[33/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc
[34/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_inverse.cc.o' -MF 'src/bali-phy@sta/tools_inverse.cc.o.d' -o 'src/bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc
[35/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc
[36/235] c++ -Isrc/bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc
[37/235] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/bali-phy@sta/io.cc.o' 'src/bali-phy@sta/util.cc.o' 'src/bali-phy@sta/tree_sequencetree.cc.o' 'src/bali-phy@sta/tree_tree.cc.o' 'src/bali-phy@sta/sequence_alphabet.cc.o' 'src/bali-phy@sta/sequence_sequence.cc.o' 'src/bali-phy@sta/tree_tree-util.cc.o' 'src/bali-phy@sta/tools_read-trees.cc.o' 'src/bali-phy@sta/sequence_sequence-format.cc.o' 'src/bali-phy@sta/alignment_alignment-util.cc.o' 'src/bali-phy@sta/rng.cc.o' 'src/bali-phy@sta/alignment_load.cc.o' 'src/bali-phy@sta/alignment_alignment.cc.o' 'src/bali-phy@sta/tools_statistics.cc.o' 'src/bali-phy@sta/tools_partition.cc.o' 'src/bali-phy@sta/tools_tree-dist.cc.o' 'src/bali-phy@sta/alignment_alignment-random.cc.o' 'src/bali-phy@sta/setup.cc.o' 'src/bali-phy@sta/tree_randomtree.cc.o' 'src/bali-phy@sta/util-random.cc.o' 'src/bali-phy@sta/tools_parsimony.cc.o' 'src/bali-phy@sta/alignment_index-matrix.cc.o' 'src/bali-phy@sta/tools_mctree.cc.o' 'src/bali-phy@sta/tools_stats-table.cc.o' 'src/bali-phy@sta/tools_findroot.cc.o' 'src/bali-phy@sta/tools_optimize.cc.o' 'src/bali-phy@sta/tools_distance-report.cc.o' 'src/bali-phy@sta/n_indels.cc.o' 'src/bali-phy@sta/tools_inverse.cc.o' 'src/bali-phy@sta/tools_joint-A-T.cc.o' 'src/bali-phy@sta/tools_distance-methods.cc.o' 'src/bali-phy@sta/tools_consensus-tree.cc.o'
[38/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/util_ptree.cc.o' -MF 'src/bali-phy@exe/util_ptree.cc.o.d' -o 'src/bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc
[39/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/substitution_substitution.cc.o' -MF 'src/bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc
[40/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/math_exponential.cc.o' -MF 'src/bali-phy@exe/math_exponential.cc.o.d' -o 'src/bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc
[41/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/parser_desugar.cc.o' -MF 'src/bali-phy@exe/parser_desugar.cc.o.d' -o 'src/bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_patterns(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/deque:66:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:757:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_range_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/deque.tcc:584:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/deque.tcc:624:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_insert_aux(__pos, __first, __last, __n);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/deque:64:0,
from ../src/parser/desugar.cc:3:
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infix(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_deque.h: In function ‘expression_ref desugar_infixpat(const Module&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_deque.h:2011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_range_insert_aux(__pos, __first, __last,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/parser/parse.H:4,
from ../src/parser/desugar.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref desugar(const Module&, const expression_ref&, const std::set<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
[42/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_moves.cc.o' -MF 'src/bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc
[43/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/prior.cc.o' -MF 'src/bali-phy@exe/prior.cc.o.d' -o 'src/bali-phy@exe/prior.cc.o' -c ../src/prior.cc
[44/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc
[45/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/probability_choose.cc.o' -MF 'src/bali-phy@exe/probability_choose.cc.o.d' -o 'src/bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc
[46/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc
[47/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/mcmc.cc:34:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[48/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/models_parameters.cc.o' -MF 'src/bali-phy@exe/models_parameters.cc.o.d' -o 'src/bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/sequence/alphabet.H:27,
from ../src/models/parameters.H:34,
from ../src/models/parameters.cc:31:
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor ‘Parameters::Parameters(const std::shared_ptr<module_loader>&, const std::vector<alignment>&, const SequenceTree&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const std::vector<model_t>&, const std::vector<boost::optional<int> >&, const model_t&, const std::vector<int>&, const key_map_t&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[49/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_hmm.cc.o' -MF 'src/bali-phy@exe/dp_hmm.cc.o.d' -o 'src/bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc
[50/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc
[51/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/TreeInterface.H:4,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[52/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_dp-array.cc.o' -MF 'src/bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc
[53/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/bali-phy.cc.o' -MF 'src/bali-phy@exe/bali-phy.cc.o.d' -o 'src/bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc
[54/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc
[55/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_3way.cc.o' -MF 'src/bali-phy@exe/dp_3way.cc.o.d' -o 'src/bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc
[56/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_2way.cc.o' -MF 'src/bali-phy@exe/dp_2way.cc.o.d' -o 'src/bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc
[57/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc
[58/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[59/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/imodel_imodel.cc.o' -MF 'src/bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc
[60/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_5way.cc.o' -MF 'src/bali-phy@exe/dp_5way.cc.o.d' -o 'src/bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc
[61/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc
[62/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc
[63/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-two-nodes.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[64/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc
[65/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/models_setup.cc.o' -MF 'src/bali-phy@exe/models_setup.cc.o.d' -o 'src/bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/stl_vector.h: In function ‘boost::optional<std::vector<double> > get_frequencies_from_tree(const ptree&, const alphabet&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/models/setup.cc:79:
/usr/include/c++/7/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[66/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc
[67/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/startup_help.cc.o' -MF 'src/bali-phy@exe/startup_help.cc.o.d' -o 'src/bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc
[68/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-topology-SPR.cc:30:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<T> spr_info::convert_to_vector(const std::map<tree_edge, U>&) const [with U = log_double_t]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[69/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/probability_probability.cc.o' -MF 'src/bali-phy@exe/probability_probability.cc.o.d' -o 'src/bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc
[70/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/models_model.cc.o' -MF 'src/bali-phy@exe/models_model.cc.o.d' -o 'src/bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util/ptree.H:5,
from ../src/models/model.cc:24:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘std::vector<expression_ref> model_parameter_expressions(const Model&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator {aka __gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[71/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc
[72/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/monitor.cc.o' -MF 'src/bali-phy@exe/monitor.cc.o.d' -o 'src/bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc
../src/monitor.cc: In function ‘void report_mem()’:
../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
system(cmd.str().c_str());
~~~~~~^~~~~~~~~~~~~~~~~~~
[73/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/math_pow2.cc.o' -MF 'src/bali-phy@exe/math_pow2.cc.o.d' -o 'src/bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc
[74/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/myexception.cc.o' -MF 'src/bali-phy@exe/myexception.cc.o.d' -o 'src/bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc
[75/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/n_indels2.cc.o' -MF 'src/bali-phy@exe/n_indels2.cc.o.d' -o 'src/bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc
[76/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc
[77/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc
[78/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc
[79/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc
[80/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/version.cc.o' -MF 'src/bali-phy@exe/version.cc.o.d' -o 'src/bali-phy@exe/version.cc.o' -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
s<<__DATE__<<" "<<__TIME__;
^~~~~~~~
[81/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/timer_stack.cc.o' -MF 'src/bali-phy@exe/timer_stack.cc.o.d' -o 'src/bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc
[82/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc
[83/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_logger.cc.o' -MF 'src/bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[84/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator {aka __gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/mcmc/mcmc.H:35,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>, int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[85/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/mcmc_setup.cc.o' -MF 'src/bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc
[86/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_operator.cc.o' -MF 'src/bali-phy@exe/computation_operator.cc.o.d' -o 'src/bali-phy@exe/computation_operator.cc.o' -c ../src/computation/operator.cc
[87/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc
[88/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc
[89/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc
[90/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, std::vector<expression_ref>)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[91/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:239:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
^~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/computation/expression/expression_ref.cc:3:
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[92/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc
[93/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<dummy>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[94/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_let.cc.o' -MF 'src/bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref let_expression(const std::vector<std::vector<std::pair<dummy, expression_ref> > >&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/dummy.H:4,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[95/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc
[96/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[97/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_case.cc.o' -MF 'src/bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref block_case(const std::vector<expression_ref>&, const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref case_expression(const expression_ref&, const expression_ref&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref def_function(const std::vector<std::vector<expression_ref> >&, const std::vector<expression_ref>&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[98/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_list.cc.o' -MF 'src/bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/stl_vector.h: In function ‘expression_ref get_list(const std::vector<T>&) [with T = expression_ref]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector<expression_ref> get_ref_vector_from_list(const expression_ref&)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[99/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/util.H:31,
from ../src/object.H:7,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_expression_dummy.cc.o' -MF 'src/bali-phy@exe/computation_expression_dummy.cc.o.d' -o 'src/bali-phy@exe/computation_expression_dummy.cc.o' -c ../src/computation/expression/dummy.cc
[101/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/parser_parse.cc.o' -MF 'src/bali-phy@exe/parser_parse.cc.o.d' -o 'src/bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc
FAILED: src/bali-phy@exe/parser_parse.cc.o
c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/parser_parse.cc.o' -MF 'src/bali-phy@exe/parser_parse.cc.o.d' -o 'src/bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/parser/parse.H:4,
from ../src/parser/parse.cc:4:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator {aka __gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cc1plus: out of memory allocating 59864912 bytes after a total of 65757184 bytes
[102/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_computation.cc.o' -MF 'src/bali-phy@exe/computation_computation.cc.o.d' -o 'src/bali-phy@exe/computation_computation.cc.o' -c ../src/computation/computation.cc
[103/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc
[104/235] c++ -Isrc/bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bali-phy-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/bali-phy@exe/computation_preprocess.cc.o' -MF 'src/bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/7/vector:69:0,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<dummy, expression_ref>}; _Tp = std::pair<dummy, expression_ref>; _Alloc = std::allocator<std::pair<dummy, expression_ref> >]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<std::pair<dummy, expression_ref> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<dummy, expression_ref>*, std::vector<std::pair<dummy, expression_ref> > >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ninja: build stopped: subcommand failed.
dh_auto_build: cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v returned exit code 1
debian/rules:12: recipe for target 'build-arch' failed
make: *** [build-arch] Error 1
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-03-27T06:47:52Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 181644
Build-Time: 389
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 634
Job: bali-phy_3.0.2+dfsg-1
Machine Architecture: armhf
Package: bali-phy
Package-Time: 1042
Source-Version: 3.0.2+dfsg-1
Space: 181644
Status: attempted
Version: 3.0.2+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-03-27T06:47:52Z
Build needed 00:17:22, 181644k disk space