baitfisher →
1.2.7+git20190123.241d060+dfsg-1 →
armhf → 2020-08-20 05:18:03
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+=====================================================================================+
| baitfisher 1.2.7+git20190123.241d060+dfsg-1 (armhf) Thu, 20 Aug 2020 05:14:39 +0000 |
+=====================================================================================+
Package: baitfisher
Version: 1.2.7+git20190123.241d060+dfsg-1
Source Version: 1.2.7+git20190123.241d060+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-cd7d9d2f-867f-40f1-9c29-7d626c26b66f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.8 MB in 10s (2603 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'baitfisher' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/baitfisher.git
Please use:
git clone https://salsa.debian.org/med-team/baitfisher.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3462 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main baitfisher 1.2.7+git20190123.241d060+dfsg-1 (dsc) [2200 B]
Get:2 http://172.17.0.1/private bullseye-staging/main baitfisher 1.2.7+git20190123.241d060+dfsg-1 (tar) [3455 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main baitfisher 1.2.7+git20190123.241d060+dfsg-1 (diff) [4804 B]
Fetched 3462 kB in 1s (4107 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/baitfisher-rSfOfS/baitfisher-1.2.7+git20190123.241d060+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/baitfisher-rSfOfS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-O3DAIc/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-O3DAIc/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-O3DAIc/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (7175 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12502 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), help2man, libtclap-dev
Filtered Build-Depends: debhelper-compat (= 13), help2man, libtclap-dev
dpkg-deb: building package 'sbuild-build-depends-baitfisher-dummy' in '/<<BUILDDIR>>/resolver-O3DAIc/apt_archive/sbuild-build-depends-baitfisher-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-baitfisher-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Sources [511 B]
Get:5 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ Packages [588 B]
Fetched 2432 B in 0s (9041 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install baitfisher build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67
liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtclap-dev libtool libuchardet0 libxml2 m4 man-db
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67
liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtclap-dev libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-baitfisher-dummy
0 upgraded, 35 newly installed, 0 to remove and 22 not upgraded.
Need to get 18.8 MB of archives.
After this operation, 69.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-O3DAIc/apt_archive ./ sbuild-build-depends-baitfisher-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtclap-dev armhf 1.2.2-1 [139 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libicu67:armhf (67.1-3) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.4-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libtclap-dev (1.2.2-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.180-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up help2man (1.47.16) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2) ...
Setting up sbuild-build-depends-baitfisher-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.1.0-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-1+rpi1 libblkid1_2.36-2 libboost-iostreams1.71.0_1.71.0-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.42-2 libcap2-bin_1:2.42-2 libcc1-0_10.1.0-6+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.1.0-6+rpi1 libgcc-s1_10.1.0-6+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6+rpi1 libgpg-error0_1.38-2 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.42-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtclap-dev_1.2.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.36-2 libxapian30_1.4.15-1 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-baitfisher-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig._HaJi2Ey/trustedkeys.kbx': General error
gpgv: Signature made Mon Aug 17 15:01:37 2020 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc
dpkg-source: info: extracting baitfisher in /<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg
dpkg-source: info: unpacking baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz
dpkg-source: info: unpacking baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_example.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-cd7d9d2f-867f-40f1-9c29-7d626c26b66f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package baitfisher
dpkg-buildpackage: info: source version 1.2.7+git20190123.241d060+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
rm -f *.o
rm -f BaitFisher-v1.2.8
rm -f BaitFilter-v1.0.6
make[1]: Leaving directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher-helper.cpp -o bait-fisher-helper.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher.cpp -o bait-fisher.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Csequence_cluster_and_center_sequence.cpp -o Csequence_cluster_and_center_sequence.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mydir-unix.cpp -o mydir-unix.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-filter.cpp -o bait-filter.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c global-types-and-parameters.cpp -o global-types-and-parameters.o
In file included from /usr/include/c++/10/vector:72,
from faststring2.h:38,
from Csequence_cluster_and_center_sequence.h:36,
from Csequence_cluster_and_center_sequence.cpp:27:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator<cluster_node>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<cluster_node>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator<cluster_node>]':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<cluster_node*, std::vector<cluster_node> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from Csequence_cluster_and_center_sequence.h:31,
from Csequence_cluster_and_center_sequence.cpp:27:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long unsigned int&&>, std::tuple<>}; _Key = long unsigned int; _Val = std::pair<const long unsigned int, double>; _KeyOfValue = std::_Select1st<std::pair<const long unsigned int, double> >; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from statistic_functions.h:33,
from Csequence_cluster_and_center_sequence.h:39,
from Csequence_cluster_and_center_sequence.cpp:27:
/usr/include/c++/10/bits/stl_map.h: In member function 'void CDistance_Cluster::run_clustering(double)':
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, double>, std::_Select1st<std::pair<const long unsigned int, double> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, double> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from faststring2.h:38,
from bait-fisher.cpp:28:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void CBait_region_information::get_vector_of_bait_sequences(std::vector<faststring>&, std::vector<unsigned int>&, std::vector<double>&, std::vector<double>&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from faststring2.h:38,
from bait-fisher.cpp:28:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void CSeqNameList::add_unchecked(const faststring&, unsigned int, double, unsigned int, unsigned int)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6
g++ -I . -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-fisher-helper.o bait-fisher.o Csequence_cluster_and_center_sequence.o mydir-unix.o -o BaitFisher-v1.2.8
make[1]: Leaving directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
cp BaitFilter-v* debian/baitfisher/usr/bin/BaitFilter
cp BaitFisher-v* debian/baitfisher/usr/bin/BaitFisher
dh_install
for sh in `grep -Rl '#!/usr/bin/bash' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/bash?#!/bin/bash?' ${sh} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
help2man --no-discard-stderr -o BaitFilter.1 ./BaitFilter-v*
help2man --no-discard-stderr -o BaitFisher.1 ./BaitFisher-v*
dh_installman
make[1]: Leaving directory '/<<BUILDDIR>>/baitfisher-1.2.7+git20190123.241d060+dfsg'
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/baitfisher/usr/bin/BaitFilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/baitfisher/usr/bin/BaitFisher contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/baitfisher/usr/bin/BaitFilter debian/baitfisher/usr/bin/BaitFisher were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'baitfisher' in '../baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.deb'.
dpkg-deb: building package 'baitfisher-dbgsym' in '../baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-08-20T05:18:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.changes:
----------------------------------------------------------
Format: 1.8
Date: Mon, 17 Aug 2020 19:53:53 +0530
Source: baitfisher
Binary: baitfisher baitfisher-dbgsym
Architecture: armhf
Version: 1.2.7+git20190123.241d060+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
baitfisher - software package for designing hybrid enrichment probes
Changes:
baitfisher (1.2.7+git20190123.241d060+dfsg-1) unstable; urgency=medium
.
* Team Upload.
[ Steffen Möller ]
* Added ref to conda
* d/u/metadata: yamllint
.
[ Nilesh Patra ]
* Add autopkgtests
* Fix lintian
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/control (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit.
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Checksums-Sha256:
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Files:
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5311bf1c8085c6cc1a13b448a8e3ca3d 4810 science optional baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.buildinfo
6c9e9f3d1d8c5a9d44fedd4141403d08 153828 science optional baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_armhf.deb
------------------------------------------------------------
new Debian package, version 2.0.
size 1723468 bytes: control archive=656 bytes.
474 bytes, 12 lines control
302 bytes, 3 lines md5sums
Package: baitfisher-dbgsym
Source: baitfisher
Version: 1.2.7+git20190123.241d060+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1775
Depends: baitfisher (= 1.2.7+git20190123.241d060+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for baitfisher
Build-Ids: 148aba3db3aae4f66b234b7ed288da2ab2f2b930 de5d8a6d830194315fc56d7fcf520c06760fa657
drwxr-xr-x root/root 0 2020-08-17 14:23 ./
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root 698956 2020-08-17 14:23 ./usr/lib/debug/.build-id/14/8aba3db3aae4f66b234b7ed288da2ab2f2b930.debug
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 1058192 2020-08-17 14:23 ./usr/lib/debug/.build-id/de/5d8a6d830194315fc56d7fcf520c06760fa657.debug
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 45944 2020-08-17 14:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/baitfisher.debug
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-08-17 14:23 ./usr/share/doc/baitfisher-dbgsym -> baitfisher
baitfisher_1.2.7+git20190123.241d060+dfsg-1_armhf.deb
-----------------------------------------------------
new Debian package, version 2.0.
size 153828 bytes: control archive=1572 bytes.
1717 bytes, 31 lines control
1219 bytes, 13 lines md5sums
Package: baitfisher
Version: 1.2.7+git20190123.241d060+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 524
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: https://github.com/cmayer/BaitFisher-package
Description: software package for designing hybrid enrichment probes
The BaitFisher package consists of two programs: BaitFisher and BaitFilter.
.
BaitFisher was been designed to construct hybrid enrichment baits from
multiple sequence alignments (MSAs) or annotated features in MSAs. The main
goal of BaitFisher is to avoid redundancy in the construction of baits by
designing fewer baits in conserved regions of the MSAs and designing more baits
in variable regions. This makes use of the fact that hybrid enrichment baits
can differ to some extends from the target region, which they should capture
in the enrichment procedure.
By specifying the allowed distance between baits and the sequences in the MSAs
the user can control the allowed bait-to-target distance and the degree of
reduction in the number of baits that are designed.
See the BaitFisher paper for details.
.
BaitFilter was designed (i) to determine whether baits bind unspecifically to
a reference genome, (ii) to filter baits that only have partial length matches
to a reference genome, (iii) to determine the optimal bait region in a MSA and
to convert baits to a format that can be uploaded at a bait constructing
company. The optimal bait region can be the most conserved region in the MSA
or the region with the highest number of sequences without gaps or ambiguous
nucleotides.
drwxr-xr-x root/root 0 2020-08-17 14:23 ./
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/bin/
-rwxr-xr-x root/root 173716 2020-08-17 14:23 ./usr/bin/BaitFilter
-rwxr-xr-x root/root 226964 2020-08-17 14:23 ./usr/bin/BaitFisher
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/baitfisher/
-rw-r--r-- root/root 931 2020-08-17 14:23 ./usr/share/doc/baitfisher/changelog.Debian.gz
-rw-r--r-- root/root 1359 2020-08-17 14:23 ./usr/share/doc/baitfisher/copyright
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/baitfisher/examples/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/BaitFilter-analysis/
-rwxr-xr-x root/root 949 2020-08-17 14:23 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/BaitFilter-analysis/run-BaitFilter.sh
drwxr-xr-x root/root 0 2019-01-23 22:22 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/alignments/
-rw-r--r-- root/root 24712 2019-01-23 22:22 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/alignments/EOG505R03.fas
-rw-r--r-- root/root 21856 2019-01-23 22:22 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/alignments/EOG57H4P2.fas
-rw-r--r-- root/root 55629 2019-01-23 22:22 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/alignments/EOG5DV4JW.fas
-rw-r--r-- root/root 2563 2019-01-23 22:22 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/parameter.txt
-rwxr-xr-x root/root 78 2020-08-17 14:23 ./usr/share/doc/baitfisher/examples/Example-without-alignment-cutting/run-example.sh
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 67 2020-08-17 14:17 ./usr/share/lintian/overrides/baitfisher
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/man/
drwxr-xr-x root/root 0 2020-08-17 14:23 ./usr/share/man/man1/
-rw-r--r-- root/root 5069 2020-08-17 14:23 ./usr/share/man/man1/BaitFilter.1.gz
-rw-r--r-- root/root 365 2020-08-17 14:23 ./usr/share/man/man1/BaitFisher.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 48560
Build-Time: 57
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 123
Job: baitfisher_1.2.7+git20190123.241d060+dfsg-1
Machine Architecture: armhf
Package: baitfisher
Package-Time: 201
Source-Version: 1.2.7+git20190123.241d060+dfsg-1
Space: 48560
Status: successful
Version: 1.2.7+git20190123.241d060+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-08-20T05:18:00Z
Build needed 00:03:21, 48560k disk space