Raspbian Package Auto-Building

Build log for adun.app (0.81-9) on armhf

adun.app0.81-9armhf → 2016-07-21 10:53:19

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard

+==============================================================================+
| adun.app 0.81-9 (armhf)                                    21 Jul 2016 10:26 |
+==============================================================================+

Package: adun.app
Version: 0.81-9
Source Version: 0.81-9
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/adun.app-An0iXF/adun.app-0.81' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/adun.app-An0iXF' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-bda16593-cfe2-472e-8827-dc95c5034282' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9180 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.3 MB in 1min 17s (261 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'adun.app' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/adun.app/trunk/
Need to get 4575 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main adun.app 0.81-9 (dsc) [2176 B]
Get:2 http://172.17.0.1/private stretch-staging/main adun.app 0.81-9 (tar) [4554 kB]
Get:3 http://172.17.0.1/private stretch-staging/main adun.app 0.81-9 (diff) [18.0 kB]
Fetched 4575 kB in 14s (317 kB/s)
Download complete and in download only mode

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gex3rc/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ Packages [506 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-gex3rc/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-gex3rc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 13893 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), gnustep-make (>= 2.6.6-2), libgnustep-gui-dev, libsteptalk-dev, libsqlclient-dev, libgsl-dev, imagemagick
Filtered Build-Depends: debhelper (>= 9), gnustep-make (>= 2.6.6-2), libgnustep-gui-dev, libsteptalk-dev, libsqlclient-dev, libgsl-dev, imagemagick
dpkg-deb: building package 'sbuild-build-depends-adun.app-dummy' in '/<<BUILDDIR>>/resolver-RCy50w/apt_archive/sbuild-build-depends-adun.app-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Sources [245 B]
Get:5 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ Packages [561 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-RCy50w/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install adun.app build dependencies (apt-based resolver)                     |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
  debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig
  fontconfig-config fonts-dejavu-core fonts-freefont-ttf gettext gettext-base
  gnustep-back-common gnustep-back0.24 gnustep-back0.24-cairo
  gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common
  gnustep-gui-runtime gnustep-make gobjc gobjc-5 groff-base hicolor-icon-theme
  imagemagick imagemagick-6.q16 imagemagick-common intltool-debian
  libao-common libao4 libarchive-zip-perl libasound2 libasound2-data
  libaspell15 libavahi-client3 libavahi-common-data libavahi-common3 libbsd0
  libcairo2 libcroco3 libcups2 libecpg6 libexpat1 libffi6 libfftw3-double3
  libfile-stripnondeterminism-perl libflac8 libflite1 libfontconfig1
  libfreetype6 libgif7 libgl1-mesa-glx libglapi-mesa libglib2.0-0
  libgnustep-base-dev libgnustep-base1.24 libgnustep-dl2-0d libgnustep-gui-dev
  libgnustep-gui0.24 libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2
  libhogweed4 libice6 libicu55 libjbig0 libjpeg62-turbo libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblqr-1-0
  libltdl7 libmagic1 libmagickcore-6.q16-2 libmagickwand-6.q16-2
  libmysqlclient18 libnettle6 libobjc-5-dev libobjc4 libogg0 libp11-kit0
  libperformance0.5 libpgtypes3 libpipeline1 libpixman-1-0 libpng16-16 libpq5
  libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsndfile1
  libsqlclient-dev libsqlclient1.7 libsqlite3-0 libssl1.0.2 libsteptalk-dev
  libsteptalk0 libtasn1-6 libtiff5 libtimedate-perl libtool libunistring0
  libvorbis0a libvorbisenc2 libx11-6 libx11-data libx11-xcb1 libxau6
  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
  libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1
  libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxml2 libxmu6
  libxrender1 libxshmfence1 libxslt1.1 libxt6 libxxf86vm1 m4 man-db
  mknfonts.tool mysql-common openssl po-debconf ucf x11-common
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev fonts-dejavu
  | gsfonts-x11 gnustep-base-doc gnustep-make-doc gcc-5-doc libobjc4-dbg groff
  imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp
  gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance
  sane-utils texlive-base-bin transfig ufraw-batch xdg-utils libaudio2 libesd0
  | libesd-alsa0 libpulse0 libasound2-plugins alsa-utils aspell cups-common
  libfftw3-bin libfftw3-dev alsa-base gnustep-gui-doc gnutls-bin gsl-ref-psdoc
  | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user
  liblcms2-utils libmagickcore-6.q16-2-extra libtool-doc gfortran
  | fortran95-compiler gcj-jdk less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur libmagickcore-6.q16-2-extra ghostscript netpbm
  aspell-en | aspell-dictionary | aspell6a-dictionary libgl1-mesa-dri
  libglib2.0-data shared-mime-info xdg-user-dirs
  gnustep-dl2-postgresql-adaptor | gnustep-dl2-sqlite-adaptor krb5-locales
  gsfonts libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
  debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig
  fontconfig-config fonts-dejavu-core fonts-freefont-ttf gettext gettext-base
  gnustep-back-common gnustep-back0.24 gnustep-back0.24-cairo
  gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common
  gnustep-gui-runtime gnustep-make gobjc gobjc-5 groff-base hicolor-icon-theme
  imagemagick imagemagick-6.q16 imagemagick-common intltool-debian
  libao-common libao4 libarchive-zip-perl libasound2 libasound2-data
  libaspell15 libavahi-client3 libavahi-common-data libavahi-common3 libbsd0
  libcairo2 libcroco3 libcups2 libecpg6 libexpat1 libffi6 libfftw3-double3
  libfile-stripnondeterminism-perl libflac8 libflite1 libfontconfig1
  libfreetype6 libgif7 libgl1-mesa-glx libglapi-mesa libglib2.0-0
  libgnustep-base-dev libgnustep-base1.24 libgnustep-dl2-0d libgnustep-gui-dev
  libgnustep-gui0.24 libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2
  libhogweed4 libice6 libicu55 libjbig0 libjpeg62-turbo libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblqr-1-0
  libltdl7 libmagic1 libmagickcore-6.q16-2 libmagickwand-6.q16-2
  libmysqlclient18 libnettle6 libobjc-5-dev libobjc4 libogg0 libp11-kit0
  libperformance0.5 libpgtypes3 libpipeline1 libpixman-1-0 libpng16-16 libpq5
  libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsndfile1
  libsqlclient-dev libsqlclient1.7 libsqlite3-0 libssl1.0.2 libsteptalk-dev
  libsteptalk0 libtasn1-6 libtiff5 libtimedate-perl libtool libunistring0
  libvorbis0a libvorbisenc2 libx11-6 libx11-data libx11-xcb1 libxau6
  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
  libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1
  libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxml2 libxmu6
  libxrender1 libxshmfence1 libxslt1.1 libxt6 libxxf86vm1 m4 man-db
  mknfonts.tool mysql-common openssl po-debconf
  sbuild-build-depends-adun.app-dummy ucf x11-common
0 upgraded, 150 newly installed, 0 to remove and 27 not upgraded.
Need to get 77.3 MB/86.0 MB of archives.
After this operation, 286 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-RCy50w/apt_archive ./ sbuild-build-depends-adun.app-dummy 0.invalid.0 [818 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.23-1 [260 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.35-1 [1064 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.4 [271 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.4 [313 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.4 [401 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf imagemagick-common all 8:6.8.9.9-7.2 [149 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libaspell15 armhf 0.60.7~20110707-3 [299 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libfftw3-double3 armhf 3.3.4-2+rvt+b1 [437 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-2 [2546 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf liblqr-1-0 armhf 0.4.2-2 [20.9 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.0-1 [109 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf liblcms2-2 armhf 2.7-1 [116 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-2 [203 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.11.1-1 [40.9 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libmagickcore-6.q16-2 armhf 8:6.8.9.9-7.2 [1516 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libmagickwand-6.q16-2 armhf 8:6.8.9.9-7.2 [378 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libogg0 armhf 1.3.2-1 [17.2 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libx11-xcb1 armhf 2:1.6.3-1 [176 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1 [20.2 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.8-1 [44.1 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.14-1 [737 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.2+dfsg-1 [57.2 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.2+dfsg-1 [111 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.2+dfsg-1 [261 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.2+dfsg-1 [131 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.13.0-1 [479 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2h-1 [667 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160709 [799 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf fonts-freefont-ttf all 20120503-4 [4262 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf gnustep-common armhf 2.6.8-1 [115 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf gnustep-base-common all 1.24.9-2 [254 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libavahi-common-data armhf 0.6.32-1 [118 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libavahi-common3 armhf 0.6.32-1 [48.6 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libavahi-client3 armhf 0.6.32-1 [51.2 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libobjc4 armhf 6.1.1-1+rpi1 [90.8 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libxslt1.1 armhf 1.1.28-4 [212 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libgnustep-base1.24 armhf 1.24.9-2 [1027 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf gnustep-base-runtime armhf 1.24.9-2 [180 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf mknfonts.tool armhf 0.5-11+b1 [14.1 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf gnustep-gui-common all 0.25.0-2 [794 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libao-common armhf 1.1.0-3 [11.0 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libao4 armhf 1.1.0-3 [32.1 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libcups2 armhf 2.1.4-4 [268 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libasound2-data all 1.1.1-2 [198 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libasound2 armhf 1.1.1-2 [467 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libflite1 armhf 2.0.0-release-1 [12.5 MB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libgif7 armhf 5.1.4-0.3 [40.6 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libgnustep-gui0.24 armhf 0.24.0-3.1 [1028 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libflac8 armhf 1.3.1-4 [145 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libvorbis0a armhf 1.3.5-3 [81.5 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libvorbisenc2 armhf 1.3.5-3 [72.6 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libsndfile1 armhf 1.0.25-10 [201 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf gnustep-gui-runtime armhf 0.24.0-3.1 [127 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libxfixes3 armhf 1:5.0.2-1 [20.1 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf gnustep-back-common armhf 0.24.0-4 [101 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.33.6-1 [454 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.11.1-1 [17.0 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.11.1-1 [11.5 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1+b1 [686 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libglapi-mesa armhf 11.2.2-1 [71.5 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libxcb-dri2-0 armhf 1.11.1-1 [12.6 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libxcb-dri3-0 armhf 1.11.1-1 [11.0 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libxcb-glx0 armhf 1.11.1-1 [25.4 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libxcb-present0 armhf 1.11.1-1 [11.1 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libxcb-randr0 armhf 1.11.1-1 [19.8 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libxcb-shape0 armhf 1.11.1-1 [11.6 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libxcb-sync1 armhf 1.11.1-1 [13.9 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libxcb-xfixes0 armhf 1.11.1-1 [14.6 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libxdamage1 armhf 1:1.1.4-2+b1 [14.1 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libxshmfence1 armhf 1.2-1 [7642 B]
Get:114 http://172.17.0.1/private stretch-staging/main armhf libgl1-mesa-glx armhf 11.2.2-1 [149 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf libxcursor1 armhf 1:1.1.14-1+b1 [31.9 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+16 [251 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf gnustep-back0.24-cairo armhf 0.24.0-4 [211 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf gnustep-back0.24 all 0.24.0-4 [79.4 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf libobjc-5-dev armhf 5.4.0-4 [335 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf gobjc-5 armhf 5.4.0-4 [23.1 MB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf gobjc armhf 4:5.3.1-3 [894 B]
Get:126 http://172.17.0.1/private stretch-staging/main armhf gnustep-make all 2.6.8-1 [229 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf hicolor-icon-theme all 0.15-1 [9550 B]
Get:128 http://172.17.0.1/private stretch-staging/main armhf imagemagick-6.q16 armhf 8:6.8.9.9-7.2 [500 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf imagemagick armhf 8:6.8.9.9-7.2 [156 kB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf libpgtypes3 armhf 9.5.3-1 [31.5 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf libpq5 armhf 9.5.3-1 [111 kB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf libecpg6 armhf 9.5.3-1 [70.7 kB]
Get:133 http://172.17.0.1/private stretch-staging/main armhf libgnustep-base-dev armhf 1.24.9-2 [1559 kB]
Get:134 http://172.17.0.1/private stretch-staging/main armhf libgnustep-dl2-0d armhf 0.12.0-14 [493 kB]
Get:135 http://172.17.0.1/private stretch-staging/main armhf libgnustep-gui-dev armhf 0.24.0-3.1 [1628 kB]
Get:136 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:137 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.1+dfsg-2 [812 kB]
Get:138 http://172.17.0.1/private stretch-staging/main armhf mysql-common all 5.6.30-1 [92.6 kB]
Get:139 http://172.17.0.1/private stretch-staging/main armhf libmysqlclient18 armhf 5.6.30-1 [710 kB]
Get:140 http://172.17.0.1/private stretch-staging/main armhf libperformance0.5 armhf 0.5.0-1 [41.9 kB]
Get:141 http://172.17.0.1/private stretch-staging/main armhf libsqlclient1.7 armhf 1.7.3-2 [62.7 kB]
Get:142 http://172.17.0.1/private stretch-staging/main armhf libsqlclient-dev armhf 1.7.3-2 [48.0 kB]
Get:143 http://172.17.0.1/private stretch-staging/main armhf libsteptalk0 armhf 0.10.0-6 [129 kB]
Get:144 http://172.17.0.1/private stretch-staging/main armhf libsteptalk-dev armhf 0.10.0-6 [21.0 kB]
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Processing triggers for libc-bin (2.23-1+rpi1) ...
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Setting up libaspell15:armhf (0.60.7~20110707-3) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up groff-base (1.22.3-8) ...
Setting up mysql-common (5.6.30-1) ...
update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
Setting up libasound2-data (1.1.1-2) ...
Setting up libxshmfence1:armhf (1.2-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libao-common (1.1.0-3) ...
Setting up imagemagick-common (8:6.8.9.9-7.2) ...
Setting up libtiff5:armhf (4.0.6-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libgif7:armhf (5.1.4-0.3) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libmysqlclient18:armhf (5.6.30-1) ...
Setting up libglapi-mesa:armhf (11.2.2-1) ...
Setting up libgsl2:armhf (2.1+dfsg-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libfftw3-double3:armhf (3.3.4-2+rvt+b1) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up gnustep-common (2.6.8-1) ...
Setting up ucf (3.0036) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up libtasn1-6:armhf (4.8-1) ...
Setting up libasound2:armhf (1.1.1-2) ...
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libxslt1.1:armhf (1.1.28-4) ...
Setting up libogg0:armhf (1.3.2-1) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
Setting up libpixman-1-0:armhf (0.33.6-1) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up openssl (1.0.2h-1) ...
Setting up libsqlite3-0:armhf (3.13.0-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up fonts-freefont-ttf (20120503-4) ...
Setting up libvorbis0a:armhf (1.3.5-3) ...
Setting up x11-common (1:7.7+16) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up ca-certificates (20160104) ...
Setting up hicolor-icon-theme (0.15-1) ...
Setting up libpgtypes3:armhf (9.5.3-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libavahi-common-data:armhf (0.6.32-1) ...
Setting up libobjc-5-dev:armhf (5.4.0-4) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up gnustep-base-common (1.24.9-2) ...
Setting up fontconfig-config (2.11.0-6.4) ...
Setting up libgsl-dev (2.1+dfsg-2) ...
Setting up libflite1:armhf (2.0.0-release-1) ...
Setting up libglib2.0-0:armhf (2.48.1-2) ...
No schema files found: doing nothing.
Setting up libao4 (1.1.0-3) ...
Setting up gnustep-gui-common (0.25.0-2) ...
Setting up libflac8:armhf (1.3.1-4) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-2) ...
Setting up libkrb5support0:armhf (1.14.2+dfsg-1) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up liblqr-1-0:armhf (0.4.2-2) ...
Setting up gobjc-5 (5.4.0-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libavahi-common3:armhf (0.6.32-1) ...
Setting up libvorbisenc2:armhf (1.3.5-3) ...
Setting up libxcb1:armhf (1.11.1-1) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libxcb-present0:armhf (1.11.1-1) ...
Setting up libfontconfig1:armhf (2.11.0-6.4) ...
Setting up libxcb-dri2-0:armhf (1.11.1-1) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libxcb-dri3-0:armhf (1.11.1-1) ...
Setting up libk5crypto3:armhf (1.14.2+dfsg-1) ...
Setting up libxcb-glx0:armhf (1.11.1-1) ...
Setting up libxcb-randr0:armhf (1.11.1-1) ...
Setting up libxcb-xfixes0:armhf (1.11.1-1) ...
Setting up libxcb-render0:armhf (1.11.1-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libgnutls30:armhf (3.4.14-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up gobjc (4:5.3.1-3) ...
Setting up libxcb-sync1:armhf (1.11.1-1) ...
Setting up libsndfile1:armhf (1.0.25-10) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libx11-xcb1:armhf (2:1.6.3-1) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up gnustep-make (2.6.8-1) ...
Setting up libxcb-shm0:armhf (1.11.1-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxcb-shape0:armhf (1.11.1-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libavahi-client3:armhf (0.6.32-1) ...
Setting up libkrb5-3:armhf (1.14.2+dfsg-1) ...
Setting up fontconfig (2.11.0-6.4) ...
Regenerating fonts cache... done.
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxfixes3:armhf (1:5.0.2-1) ...
Setting up po-debconf (1.0.19) ...
Setting up libmagickcore-6.q16-2:armhf (8:6.8.9.9-7.2) ...
Setting up libxmu6:armhf (2:1.1.2-2) ...
Setting up libgssapi-krb5-2:armhf (1.14.2+dfsg-1) ...
Setting up libgnustep-base1.24 (1.24.9-2) ...
Setting up libxcursor1:armhf (1:1.1.14-1+b1) ...
Setting up libpq5:armhf (9.5.3-1) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1) ...
Setting up libcups2:armhf (2.1.4-4) ...
Setting up libecpg6:armhf (9.5.3-1) ...
Setting up libcairo2:armhf (1.14.6-1+b1) ...
Setting up gnustep-base-runtime (1.24.9-2) ...
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libgnustep-base-dev (1.24.9-2) ...
Setting up libxdamage1:armhf (1:1.1.4-2+b1) ...
Setting up mknfonts.tool (0.5-11+b1) ...
Setting up libmagickwand-6.q16-2:armhf (8:6.8.9.9-7.2) ...
Setting up libgl1-mesa-glx:armhf (11.2.2-1) ...
Setting up libgnustep-gui0.24 (0.24.0-3.1) ...
Setting up libperformance0.5 (0.5.0-1) ...
Setting up imagemagick-6.q16 (8:6.8.9.9-7.2) ...
Setting up libsqlclient1.7 (1.7.3-2) ...
Setting up libsqlclient-dev (1.7.3-2) ...
Setting up gnustep-gui-runtime (0.24.0-3.1) ...
Setting up imagemagick (8:6.8.9.9-7.2) ...
update-alternatives: using /usr/bin/compare-im6 to provide /usr/bin/compare (compare) in auto mode
update-alternatives: using /usr/bin/animate-im6 to provide /usr/bin/animate (animate) in auto mode
update-alternatives: using /usr/bin/convert-im6 to provide /usr/bin/convert (convert) in auto mode
update-alternatives: using /usr/bin/composite-im6 to provide /usr/bin/composite (composite) in auto mode
update-alternatives: using /usr/bin/conjure-im6 to provide /usr/bin/conjure (conjure) in auto mode
update-alternatives: using /usr/bin/import-im6 to provide /usr/bin/import (import) in auto mode
update-alternatives: using /usr/bin/identify-im6 to provide /usr/bin/identify (identify) in auto mode
update-alternatives: using /usr/bin/stream-im6 to provide /usr/bin/stream (stream) in auto mode
update-alternatives: using /usr/bin/display-im6 to provide /usr/bin/display (display) in auto mode
update-alternatives: using /usr/bin/montage-im6 to provide /usr/bin/montage (montage) in auto mode
update-alternatives: using /usr/bin/mogrify-im6 to provide /usr/bin/mogrify (mogrify) in auto mode
Setting up gnustep-back-common (0.24.0-4) ...
Generating GNUstep nfont descriptions... done.
Setting up gnustep-back0.24-cairo (0.24.0-4) ...
update-alternatives: using /usr/lib/GNUstep/Bundles/libgnustep-cairo-024.bundle to provide /usr/lib/GNUstep/Bundles/libgnustep-back-024.bundle (gnustep-back-024) in auto mode
Setting up libgnustep-gui-dev (0.24.0-3.1) ...
Setting up gnustep-back0.24 (0.24.0-4) ...
Setting up libgnustep-dl2-0d (0.12.0-14) ...
Setting up libsteptalk0 (0.10.0-6) ...
Setting up libsteptalk-dev (0.10.0-6) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160709) ...
Setting up sbuild-build-depends-adun.app-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Processing triggers for systemd (230-5) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.5.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.23-1+rpi1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20160104 console-setup_1.146 console-setup-linux_1.146 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160709 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fontconfig_2.11.0-6.4 fontconfig-config_2.11.0-6.4 fonts-dejavu-core_2.35-1 fonts-freefont-ttf_20120503-4 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gnustep-back-common_0.24.0-4 gnustep-back0.24_0.24.0-4 gnustep-back0.24-cairo_0.24.0-4 gnustep-base-common_1.24.9-2 gnustep-base-runtime_1.24.9-2 gnustep-common_2.6.8-1 gnustep-gui-common_0.25.0-2 gnustep-gui-runtime_0.24.0-3.1 gnustep-make_2.6.8-1 gobjc_4:5.3.1-3 gobjc-5_5.4.0-4 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hicolor-icon-theme_0.15-1 hostname_3.18 ifupdown_0.8.13 imagemagick_8:6.8.9.9-7.2 imagemagick-6.q16_8:6.8.9.9-7.2 imagemagick-common_8:6.8.9.9-7.2 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 iproute2_4.3.0-1 kbd_2.0.3-2 keyboard-configuration_1.146 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libao-common_1.1.0-3 libao4_1.1.0-3 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre2 libarchive-zip-perl_1.57-1 libasan2_5.4.0-4 libasound2_1.1.1-2 libasound2-data_1.1.1-2 libaspell15_0.60.7~20110707-3 libatm1_1:2.5.1-1.6 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libavahi-client3_0.6.32-1 libavahi-common-data_0.6.32-1 libavahi-common3_0.6.32-1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-1+rpi1 libc-dev-bin_2.23-1+rpi1 libc6_2.23-1+rpi1 libc6-dev_2.23-1+rpi1 libcairo2_1.14.6-1+b1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcups2_2.1.4-4 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libecpg6_9.5.3-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfftw3-double3_3.3.4-2+rvt+b1 libfile-stripnondeterminism-perl_0.019-1 libflac8_1.3.1-4 libflite1_2.0.0-release-1 libfontconfig1_2.11.0-6.4 libfreetype6_2.6.3-3+b1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libgif7_5.1.4-0.3 libgl1-mesa-glx_11.2.2-1 libglapi-mesa_11.2.2-1 libglib2.0-0_2.48.1-2 libgmp10_2:6.1.1+dfsg-1 libgnustep-base-dev_1.24.9-2 libgnustep-base1.24_1.24.9-2 libgnustep-dl2-0d_0.12.0-14 libgnustep-gui-dev_0.24.0-3.1 libgnustep-gui0.24_0.24.0-3.1 libgnutls30_3.4.14-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.14.2+dfsg-1 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.5.0-1 libk5crypto3_1.14.2+dfsg-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkrb5-3_1.14.2+dfsg-1 libkrb5support0_1.14.2+dfsg-1 liblcms2-2_2.7-1 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblocale-gettext-perl_1.07-3 liblqr-1-0_0.4.2-2 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmagickcore-6.q16-2_8:6.8.9.9-7.2 libmagickwand-6.q16-2_8:6.8.9.9-7.2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmysqlclient18_5.6.30-1 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libnettle6_3.2-1 libobjc-5-dev_5.4.0-4 libobjc4_6.1.1-1+rpi1 libogg0_1.3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperformance0.5_0.5.0-1 libperl5.22_5.22.2-2 libpgtypes3_9.5.3-1 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libpng16-16_1.6.23-1 libpq5_9.5.3-1 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28-5 libsndfile1_1.0.25-10 libsqlclient-dev_1.7.3-2 libsqlclient1.7_1.7.3-2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsteptalk-dev_0.10.0-6 libsteptalk0_0.10.0-6 libsystemd0_230-5 libtasn1-6_4.8-1 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libvorbis0a_1.3.5-3 libvorbisenc2_1.3.5-3 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libx11-xcb1_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.11.1-1 libxcb-dri3-0_1.11.1-1 libxcb-glx0_1.11.1-1 libxcb-present0_1.11.1-1 libxcb-randr0_1.11.1-1 libxcb-render0_1.11.1-1 libxcb-shape0_1.11.1-1 libxcb-shm0_1.11.1-1 libxcb-sync1_1.11.1-1 libxcb-xfixes0_1.11.1-1 libxcb1_1.11.1-1 libxcursor1_1:1.1.14-1+b1 libxdamage1_1:1.1.4-2+b1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.2-1 libxml2_2.9.3+dfsg1-1.2 libxmu6_2:1.1.2-2 libxrender1_1:0.9.9-2 libxshmfence1_1.2-1 libxslt1.1_1.1.28-4 libxt6_1:1.1.5-1 libxxf86vm1_1:1.1.4-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mknfonts.tool_0.5-11+b1 mount_2.28-5 multiarch-support_2.23-1+rpi1 mysql-common_5.6.30-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 netbase_5.3 openssl_1.0.2h-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 po-debconf_1.0.19 procps_2:3.3.11-3 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-adun.app-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016f-1 ucf_3.0036 udev_230-5 util-linux_2.28-5 x11-common_1:7.7+16 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Jul  4 12:16:43 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./adun.app_0.81-9.dsc
dpkg-source: info: extracting adun.app in adun.app-0.81
dpkg-source: info: unpacking adun.app_0.81.orig.tar.gz
dpkg-source: info: unpacking adun.app_0.81-9.debian.tar.xz
dpkg-source: info: applying 05_no-plugin-script.patch
dpkg-source: info: applying 15_link-properly.patch
dpkg-source: info: applying 20_paths.patch
dpkg-source: info: applying fix-implicit-pointer.patch
dpkg-source: info: applying gcc-warnings.patch
dpkg-source: info: applying enable-scripting-extension.patch
dpkg-source: info: applying enable-sql-extension.patch
dpkg-source: info: applying gcc-6.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-bda16593-cfe2-472e-8827-dc95c5034282
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package adun.app
dpkg-buildpackage: info: source version 0.81-9
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build adun.app-0.81
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
	make -j1 distclean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
This is gnustep-make 2.6.8. Type 'make print-gnustep-make-help' for help.
rm -rf ./*~ ./obj
Making clean in Kernel/ ...
rm -rf ./*~ ./obj
Making clean in Base ...
rm -rf ./*~ ./obj
Making clean in AdunKernel ...
rm -rf ./*~ ./obj
Making clean in subprojects of framework AdunKernel...
rm -rf ./*~ ./obj
rm -rf ./*~ ./obj
Making clean in subprojects of subproject CoreAdditions...
rm -rf ./*~ ./obj
Making clean for framework AdunKernel...
rm -rf ./Resources/AdunCore
Making clean in MolTalk/ ...
rm -rf ./*~ ./obj
Making clean for framework MolTalk...
Making clean in UL/ ...
rm -rf ./*~ ./obj
Making clean in XMLLib ...
rm -rf ./*~ ./obj
Making clean in ULFramework ...
rm -rf ./*~ ./obj
Making clean for framework ULFramework...
Making clean in AdunServer ...
rm -rf ./*~ ./obj
Making clean in Extensions/ULApplicationScripting ...
rm -rf ./*~ ./obj
(cd .; \
rm -rf   ULApplicationScripting.bundle)
Making clean in Extensions/ULSQLDatabaseBackend ...
rm -rf ./*~ ./obj
(cd .; \
rm -rf   ULSQLDatabaseBackend.bundle)
(cd .; \
rm -rf    *.app)
Making distclean in Kernel/ ...
Making distclean in Base ...
make[3]: Nothing to be done for 'distclean'.
Making distclean in AdunKernel ...
Making distclean in subprojects of framework AdunKernel...
make[4]: Nothing to be done for 'distclean'.
Making distclean in subprojects of subproject CoreAdditions...
make[5]: Nothing to be done for 'distclean'.
Making distclean for framework AdunKernel...
make[4]: Nothing to be done for 'internal-framework-distclean'.
Making distclean in MolTalk/ ...
Making distclean for framework MolTalk...
make[3]: Nothing to be done for 'internal-framework-distclean'.
Making distclean in UL/ ...
Making distclean in XMLLib ...
make[3]: Nothing to be done for 'distclean'.
Making distclean in ULFramework ...
Making distclean for framework ULFramework...
make[4]: Nothing to be done for 'internal-framework-distclean'.
Making distclean in AdunServer ...
make[3]: Nothing to be done for 'distclean'.
Making distclean in Extensions/ULApplicationScripting ...
make[3]: Nothing to be done for 'distclean'.
Making distclean in Extensions/ULSQLDatabaseBackend ...
make[3]: Nothing to be done for 'distclean'.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean adun.xpm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
MAKELEVEL=0 /usr/bin/make GNUSTEP_MAKE_PARALLEL_BUILDING=no  \
  messages=yes CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" FCFLAGS="-g -O2 -fstack-protector-strong" FFLAGS="-g -O2 -fstack-protector-strong" GCJFLAGS="-g -O2 -fstack-protector-strong" LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app" OBJCFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" OBJCXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" 
make: Entering directory '/<<PKGBUILDDIR>>'
This is gnustep-make 2.6.8. Type 'make print-gnustep-make-help' for help.
Making all in Kernel/ ...
make[1]: Entering directory '/<<PKGBUILDDIR>>/Kernel'
Making all in Base ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/Kernel/Base'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for library libadun_base...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libadun_base.obj/
gcc AdHarmonicBond.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdHarmonicBond.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdHarmonicBond.c:30:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdEnzymixBond.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdEnzymixBond.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdEnzymixBond.c:29:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdEnzymixAngle.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdEnzymixAngle.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdEnzymixAngle.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdHarmonicAngle.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdHarmonicAngle.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdHarmonicAngle.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdFourierTorsion.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdFourierTorsion.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdFourierTorsion.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdFourierTorsion.c: In function 'AdFourierTorsionEnergy':
AdFourierTorsion.c:45:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable]
  double  n2_n1, n1_n2, period, phase, holder, tor_cnst;
                 ^
AdFourierTorsion.c:45:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable]
  double  n2_n1, n1_n2, period, phase, holder, tor_cnst;
          ^
AdFourierTorsion.c: In function 'AdCalculateTorsionAngle':
AdFourierTorsion.c:550:16: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable]
  double n2_n1, n1_n2;
                ^
AdFourierTorsion.c:550:9: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable]
  double n2_n1, n1_n2;
         ^
gcc AdHarmonicImproperTorsion.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdHarmonicImproperTorsion.c:25:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdHarmonicImproperTorsion.c: In function 'AdHarmonicImproperTorsionEnergy':
AdHarmonicImproperTorsion.c:100:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable]
  double  n2_n1, n1_n2, equilibriumAngle, tor_cnst;
                 ^
AdHarmonicImproperTorsion.c:100:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable]
  double  n2_n1, n1_n2, equilibriumAngle, tor_cnst;
          ^
gcc AdCoulombAndLennardJonesA.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdCoulombAndLennardJonesA.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdCoulombAndLennardJonesA.c: In function 'AdGRFCoulombAndLennardJonesAEnergy':
AdCoulombAndLennardJonesA.c:497:10: warning: unused parameter 'b1' [-Wunused-parameter]
   double b1,
          ^
gcc AdCoulombAndLennardJonesB.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o
In file included from ../Base/AdForceFieldFunctions.h:33:0,
                 from AdCoulombAndLennardJonesB.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdCoulombAndLennardJonesB.c: In function 'AdGRFCoulombAndLennardJonesBEnergy':
AdCoulombAndLennardJonesB.c:351:10: warning: unused parameter 'b1' [-Wunused-parameter]
   double b1,
          ^
gcc AdLinkedList.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdLinkedList.c.o
In file included from AdLinkedList.c:23:0:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdLinkedList.c:53:76: warning: unused parameter 'index' [-Wunused-parameter]
 int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                            ^
gcc AdMatrix.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdMatrix.c.o
AdMatrix.c: In function 'AdSparseMatrixRowLength':
AdMatrix.c:638:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(rowIndex = matrix->no_rows - 1)
  ^
gcc AdGeneralizedBornFunctions.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o
In file included from AdGeneralizedBornFunctions.h:31:0,
                 from AdGeneralizedBornFunctions.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusDerivative':
AdGeneralizedBornFunctions.c:223:33: warning: unused variable 'forceMagnitude' [-Wunused-variable]
  double numerator, denominator, forceMagnitude, preFactor, f;
                                 ^
AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusCoefficient':
AdGeneralizedBornFunctions.c:262:33: warning: unused variable 'forceMagnitude' [-Wunused-variable]
  double numerator, denominator, forceMagnitude, preFactor, f;
                                 ^
gcc AdQuaternion.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdQuaternion.c.o
AdQuaternion.c:24:21: warning: missing braces around initializer [-Wmissing-braces]
 static Vector3D x = {0.0, 1, 0, 0};
                     ^
AdQuaternion.c:24:21: note: (near initialization for 'x')
AdQuaternion.c:25:21: warning: missing braces around initializer [-Wmissing-braces]
 static Vector3D y = {0.0, 0, 1, 0};
                     ^
AdQuaternion.c:25:21: note: (near initialization for 'y')
AdQuaternion.c:26:21: warning: missing braces around initializer [-Wmissing-braces]
 static Vector3D z = {0.0, 0, 0, 1};
                     ^
AdQuaternion.c:26:21: note: (near initialization for 'z')
gcc AdQuadratureFunctions.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdQuadratureFunctions.c.o
AdQuadratureFunctions.c: In function 'AdGenerateGaussLegendrePoints':
AdQuadratureFunctions.c:93:18: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  unsigned int i, count;
                  ^
gcc AdSorter.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdSorter.c.o
gcc AdVector.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdVector.c.o
gcc AdVolumeFunctions.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdVolumeFunctions.c.o
In file included from AdVolumeFunctions.h:32:0,
                 from AdVolumeFunctions.c:23:
../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction':
AdVolumeFunctions.c:235:11: warning: variable 'matrix' set but not used [-Wunused-but-set-variable]
  double** matrix;
           ^
AdVolumeFunctions.c:234:43: warning: unused variable 'checkVal' [-Wunused-variable]
  double retVal, value, smoothingBoundary, checkVal;
                                           ^
AdVolumeFunctions.c:234:24: warning: unused variable 'smoothingBoundary' [-Wunused-variable]
  double retVal, value, smoothingBoundary, checkVal;
                        ^
AdVolumeFunctions.c:233:9: warning: unused variable 'j' [-Wunused-variable]
  int i, j, index;
         ^
AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction2':
AdVolumeFunctions.c:310:36: warning: unused variable 'checkVal' [-Wunused-variable]
  double retVal, smoothingBoundary, checkVal;
                                    ^
AdVolumeFunctions.c:310:17: warning: unused variable 'smoothingBoundary' [-Wunused-variable]
  double retVal, smoothingBoundary, checkVal;
                 ^
AdVolumeFunctions.c:309:9: warning: unused variable 'j' [-Wunused-variable]
  int i, j, index, count;
         ^
AdVolumeFunctions.c: In function 'AdVolumeFunctionAtomDerivative':
AdVolumeFunctions.c:430:9: warning: unused variable 'value' [-Wunused-variable]
  double value, length, radius;
         ^
AdVolumeFunctions.c: In function 'AdVolumeFunctionPositionDerivative':
AdVolumeFunctions.c:569:9: warning: unused variable 'value' [-Wunused-variable]
  double value, length, radius;
         ^
AdVolumeFunctions.c: In function 'AdAVEFunctionPositionDerivative':
AdVolumeFunctions.c:147:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
gcc AdBaseFunctions.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libadun_base.obj/AdBaseFunctions.c.o
gcc  -shared -Wl,-soname,libadun_base.so.0  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./obj/libadun_base.so.0.0.1 obj/libadun_base.obj/AdHarmonicBond.c.o obj/libadun_base.obj/AdEnzymixBond.c.o obj/libadun_base.obj/AdEnzymixAngle.c.o obj/libadun_base.obj/AdHarmonicAngle.c.o obj/libadun_base.obj/AdFourierTorsion.c.o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o obj/libadun_base.obj/AdLinkedList.c.o obj/libadun_base.obj/AdMatrix.c.o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o obj/libadun_base.obj/AdQuaternion.c.o obj/libadun_base.obj/AdQuadratureFunctions.c.o obj/libadun_base.obj/AdSorter.c.o obj/libadun_base.obj/AdVector.c.o obj/libadun_base.obj/AdVolumeFunctions.c.o obj/libadun_base.obj/AdBaseFunctions.c.o   -L/usr/local/lib    -L/usr/local/lib -L/usr/lib   -lgsl -lm   && (cd ./obj; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; )
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/Base'
Making all in AdunKernel ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
Making build-headers in subprojects of framework AdunKernel...
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
Making build-headers for subproject Framework...
/usr/share/GNUstep/Makefiles/mkinstalldirs ../AdunKernel.framework/Versions/0/Headers
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making build-headers in subprojects of subproject CoreAdditions...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making build-headers for subproject CoreCommands...
/usr/bin/install -c -p  -m 644 AdStatusCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdStatusCommand.h
/usr/bin/install -c -p  -m 644 AdEndSimulationCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdEndSimulationCommand.h
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making build-headers for subproject CoreAdditions...
make[4]: Nothing to be done for 'internal-subproject-build-headers'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making build-headers for framework AdunKernel...
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdFrameworkFunctions.h AdunKernel.framework/Versions/0/Headers/AdFrameworkFunctions.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunDefinitions.h AdunKernel.framework/Versions/0/Headers/AdunDefinitions.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdDataSources.h AdunKernel.framework/Versions/0/Headers/AdDataSources.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdGridDelegate.h AdunKernel.framework/Versions/0/Headers/AdGridDelegate.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdServerInterface.h AdunKernel.framework/Versions/0/Headers/AdServerInterface.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdIndexSetConversions.h AdunKernel.framework/Versions/0/Headers/AdIndexSetConversions.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdMemento.h AdunKernel.framework/Versions/0/Headers/AdMemento.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdMatrixModification.h AdunKernel.framework/Versions/0/Headers/AdMatrixModification.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunTimer.h AdunKernel.framework/Versions/0/Headers/AdunTimer.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunModelObject.h AdunKernel.framework/Versions/0/Headers/AdunModelObject.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMatrixStructureCoder.h AdunKernel.framework/Versions/0/Headers/AdunMatrixStructureCoder.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunDataMatrix.h AdunKernel.framework/Versions/0/Headers/AdunDataMatrix.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunDataSet.h AdunKernel.framework/Versions/0/Headers/AdunDataSet.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunDataSource.h AdunKernel.framework/Versions/0/Headers/AdunDataSource.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunContainerDataSource.h AdunKernel.framework/Versions/0/Headers/AdunContainerDataSource.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunElementSelection.h AdunKernel.framework/Versions/0/Headers/AdunElementSelection.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunGrid.h AdunKernel.framework/Versions/0/Headers/AdunGrid.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSphericalBox.h AdunKernel.framework/Versions/0/Headers/AdunSphericalBox.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunEllipsoidBox.h AdunKernel.framework/Versions/0/Headers/AdunEllipsoidBox.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunCuboidBox.h AdunKernel.framework/Versions/0/Headers/AdunCuboidBox.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMoleculeCavity.h AdunKernel.framework/Versions/0/Headers/AdunMoleculeCavity.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunCellListHandler.h AdunKernel.framework/Versions/0/Headers/AdunCellListHandler.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSimpleListHandler.h AdunKernel.framework/Versions/0/Headers/AdunSimpleListHandler.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunLinkedList.h AdunKernel.framework/Versions/0/Headers/AdunLinkedList.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunListHandler.h AdunKernel.framework/Versions/0/Headers/AdunListHandler.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunDynamics.h AdunKernel.framework/Versions/0/Headers/AdunDynamics.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunInteractionSystem.h AdunKernel.framework/Versions/0/Headers/AdunInteractionSystem.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSystem.h AdunKernel.framework/Versions/0/Headers/AdunSystem.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSystemCollection.h AdunKernel.framework/Versions/0/Headers/AdunSystemCollection.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdForceFieldTerm.h AdunKernel.framework/Versions/0/Headers/AdForceFieldTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunHarmonicConstraintTerm.h AdunKernel.framework/Versions/0/Headers/AdunHarmonicConstraintTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSCAAS.h AdunKernel.framework/Versions/0/Headers/AdunSCAAS.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunNonbondedTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunPureNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunPureNonbondedTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunGRFNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunGRFNonbondedTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunShiftedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunShiftedNonbondedTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunMultithreadedNonbondedTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSmoothedGBTerm.h AdunKernel.framework/Versions/0/Headers/AdunSmoothedGBTerm.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunForceField.h AdunKernel.framework/Versions/0/Headers/AdunForceField.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMolecularMechanicsForceField.h AdunKernel.framework/Versions/0/Headers/AdunMolecularMechanicsForceField.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunEnzymixForceField.h AdunKernel.framework/Versions/0/Headers/AdunEnzymixForceField.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunAmberForceField.h AdunKernel.framework/Versions/0/Headers/AdunAmberForceField.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunCharmmForceField.h AdunKernel.framework/Versions/0/Headers/AdunCharmmForceField.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunForceFieldCollection.h AdunKernel.framework/Versions/0/Headers/AdunForceFieldCollection.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunConfigurationGenerator.h AdunKernel.framework/Versions/0/Headers/AdunConfigurationGenerator.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSimulator.h AdunKernel.framework/Versions/0/Headers/AdunSimulator.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunLangevinThermostat.h AdunKernel.framework/Versions/0/Headers/AdunLangevinThermostat.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunBerendsenThermostat.h AdunKernel.framework/Versions/0/Headers/AdunBerendsenThermostat.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMinimiser.h AdunKernel.framework/Versions/0/Headers/AdunMinimiser.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunMemoryManager.h AdunKernel.framework/Versions/0/Headers/AdunMemoryManager.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdCoreCommand.h AdunKernel.framework/Versions/0/Headers/AdCoreCommand.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdCoreAdditions.h AdunKernel.framework/Versions/0/Headers/AdCoreAdditions.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdCommandInterface.h AdunKernel.framework/Versions/0/Headers/AdCommandInterface.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdController.h AdunKernel.framework/Versions/0/Headers/AdController.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunIOManager.h AdunKernel.framework/Versions/0/Headers/AdunIOManager.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunSimulationData.h AdunKernel.framework/Versions/0/Headers/AdunSimulationData.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunTrajectory.h AdunKernel.framework/Versions/0/Headers/AdunTrajectory.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunFileSystemSimulationStorage.h AdunKernel.framework/Versions/0/Headers/AdunFileSystemSimulationStorage.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunController.h AdunKernel.framework/Versions/0/Headers/AdunController.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunTemplateProcessor.h AdunKernel.framework/Versions/0/Headers/AdunTemplateProcessor.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunCheckpointManager.h AdunKernel.framework/Versions/0/Headers/AdunCheckpointManager.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunCore.h AdunKernel.framework/Versions/0/Headers/AdunCore.h
/usr/bin/install -c -p  -m 644 Headers/AdunKernel/AdunKernel.h AdunKernel.framework/Versions/0/Headers/AdunKernel.h
/usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \
touch derived_src/.stamp
/usr/share/GNUstep/Makefiles/mkinstalldirs AdunKernel.framework/Versions/0/Resources
cd ./AdunKernel.framework/Versions; \
rm -f Current; \
ln -s 0 Current
cd ./AdunKernel.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "AdunKernel" ]; then \
    rm -f ./AdunKernel; \
    ln -s ../AdunKernel.framework/Headers \
                    ./AdunKernel; \
  fi
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all in subprojects of framework AdunKernel...
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for subproject Framework...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/Framework.obj/
gcc AdFrameworkFunctions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdFrameworkFunctions.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from AdFrameworkFunctions.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdIndexSetConversions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdIndexSetConversions.m.o
gcc AdunTimer.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunTimer.m.o
gcc AdunModelObject.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunModelObject.m.o
AdunModelObject.m: In function '-[AdModelObject addInputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]':
AdunModelObject.m:232:1: warning: unused parameter 'objectName' [-Wunused-parameter]
 {
 ^
AdunModelObject.m:232:1: warning: unused parameter 'schema' [-Wunused-parameter]
AdunModelObject.m:232:1: warning: unused parameter 'databaseName' [-Wunused-parameter]
AdunModelObject.m: In function '-[AdModelObject addOutputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]':
AdunModelObject.m:324:1: warning: unused parameter 'objectName' [-Wunused-parameter]
 {
 ^
AdunModelObject.m:324:1: warning: unused parameter 'schema' [-Wunused-parameter]
AdunModelObject.m:324:1: warning: unused parameter 'databaseName' [-Wunused-parameter]
gcc AdunMatrixStructureCoder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMatrixStructureCoder.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from AdunMatrixStructureCoder.m:26:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunDataMatrix.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunDataMatrix.m.o
AdunDataMatrix.m: In function '+[AdDataMatrix initialize]':
AdunDataMatrix.m:377:5: warning: @interface of class 'NSDoubleNumber' not found
     [NSDoubleNumber class], @"double", 
     ^
AdunDataMatrix.m:378:5: warning: @interface of class 'NSIntNumber' not found
     [NSIntNumber class], @"int", nil];
     ^
AdunDataMatrix.m: In function '-[AdDataMatrix _initWithCoderPre0:7:]':
AdunDataMatrix.m:1266:6: warning: variable 'matrixElements' set but not used [-Wunused-but-set-variable]
  int matrixElements;
      ^
AdunDataMatrix.m: In function '-[AdMutableDataMatrix extendMatrixWithColumnValues:]':
AdunDataMatrix.m:2149:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [keyEnum nextObject])
  ^
gcc AdunDataSet.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunDataSet.m.o
gcc AdunDataSource.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunDataSource.m.o
AdunDataSource.m: In function '-[AdDataSource initWithDataSource:]':
AdunDataSource.m:239:3: warning: 'AdDataSource' may not respond to '-setNonbondedPairs:'
   [dataSource indexSetArrayForCategory: @"Nonbonded"]]; 
   ^
AdunDataSource.m:239:3: warning: (Messages without a matching method signature
AdunDataSource.m:239:3: warning: will be assumed to return 'id' and accept
AdunDataSource.m:239:3: warning: '...' as arguments.)
AdunDataSource.m: In function '-[AdDataSource elementPairsNotInInteractionsOfCategory:]':
AdunDataSource.m:286:1: warning: unused parameter 'aString' [-Wunused-parameter]
 {
 ^
AdunDataSource.m: In function '-[AdDataSource groupsForInteraction:containingElement:]':
AdunDataSource.m:348:1: warning: unused parameter 'interaction' [-Wunused-parameter]
 {
 ^
AdunDataSource.m:348:1: warning: unused parameter 'elementIndex' [-Wunused-parameter]
AdunDataSource.m: In function '-[AdDataSource constraintForInteraction:]':
AdunDataSource.m:382:1: warning: unused parameter 'interaction' [-Wunused-parameter]
 {
 ^
AdunDataSource.m: In function '-[AdDataSource indexSetArrayForCategory:]':
AdunDataSource.m:387:1: warning: unused parameter 'category' [-Wunused-parameter]
 {  
 ^
AdunDataSource.m: In function '-[AdMutableDataSource(BiomolecularSystemExtensions) _residueForElement:]':
AdunDataSource.m:1256:16: warning: variable 'arrayEnum' set but not used [-Wunused-but-set-variable]
  NSEnumerator* arrayEnum;
                ^
gcc AdunContainerDataSource.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunContainerDataSource.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunContainerDataSource.h:32,
                 from AdunContainerDataSource.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunContainerDataSource.m: In function '-[AdContainerDataSource indexSetArrayForCategory:]':
AdunContainerDataSource.m:727:1: warning: unused parameter 'category' [-Wunused-parameter]
 {
 ^
AdunContainerDataSource.m: At top level:
AdunContainerDataSource.m:813:1: warning: incomplete implementation of class 'AdContainerDataSource'
 @end
 ^
AdunContainerDataSource.m:813:1: warning: method definition for '-constraintForInteraction:' not found
AdunContainerDataSource.m:813:1: warning: method definition for '-groupsForInteraction:containingElement:' not found
AdunContainerDataSource.m:813:1: warning: method definition for '-indexesOfElementsWithValues:forProperty:' not found
AdunContainerDataSource.m:813:1: warning: class 'AdContainerDataSource' does not fully implement the 'AdSystemDataSource' protocol
AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) insertSystem:]':
AdunContainerDataSource.m:871:16: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable]
  AdDataMatrix* coordinates;
                ^
AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) removeSystem:]':
AdunContainerDataSource.m:923:35: warning: variable 'configuration' set but not used [-Wunused-but-set-variable]
  AdDataMatrix* newConf, *matrix, *configuration;
                                   ^
gcc AdunElementSelection.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunElementSelection.m.o
AdunElementSelection.m: In function '-[AdElementSelection setSelectionString:]':
AdunElementSelection.m:173:32: warning: variable 'commaSet' set but not used [-Wunused-but-set-variable]
  NSCharacterSet* categorySet, *commaSet;
                                ^
AdunElementSelection.m: In function '-[AdElementSelection _rowsInMatrix:matchingSpecifiers:categoryColumn:subcategoryColumn:restrictToRows:]':
AdunElementSelection.m:275:1: warning: unused parameter 'subcategoryColumn' [-Wunused-parameter]
 {
 ^
AdunElementSelection.m: In function '-[AdElementSelection matchingGroupsInDataSource:]':
AdunElementSelection.m:373:11: warning: variable 'groupSpecifiers' set but not used [-Wunused-but-set-variable]
  NSArray* groupSpecifiers;
           ^
gcc AdunGrid.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunGrid.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunCuboidBox.h:26,
                 from AdunGrid.m:26:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunGrid.m: In function '-[AdGrid initWithDensity:cavity:]':
AdunGrid.m:216:1: warning: unused parameter 'density' [-Wunused-parameter]
 {
 ^
AdunGrid.m:216:1: warning: unused parameter 'cavity' [-Wunused-parameter]
AdunGrid.m: In function '-[AdGrid initWithDivisions:cavity:]':
AdunGrid.m:222:1: warning: unused parameter 'divisions' [-Wunused-parameter]
 {
 ^
AdunGrid.m:222:1: warning: unused parameter 'cavity' [-Wunused-parameter]
gcc AdunSphericalBox.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSphericalBox.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunSphericalBox.h:5,
                 from AdunSphericalBox.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunEllipsoidBox.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunEllipsoidBox.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunEllipsoidBox.h:5,
                 from AdunEllipsoidBox.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunCuboidBox.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunCuboidBox.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunCuboidBox.h:26,
                 from AdunCuboidBox.m:23:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunMoleculeCavity.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMoleculeCavity.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from AdunMoleculeCavity.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunMoleculeCavity.m: In function '-[AdMoleculeCavity _calculateCavityExtremes]':
AdunMoleculeCavity.m:63:17: warning: 'max[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double min[3], max[3];
                 ^
AdunMoleculeCavity.m:63:9: warning: 'min[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double min[3], max[3];
         ^
AdunMoleculeCavity.m:63:17: warning: 'max[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double min[3], max[3];
                 ^
AdunMoleculeCavity.m:63:9: warning: 'min[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double min[3], max[3];
         ^
AdunMoleculeCavity.m:63:17: warning: 'max[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double min[3], max[3];
                 ^
gcc AdunCellListHandler.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunCellListHandler.m.o
In file included from ../Headers/AdunKernel/AdunCellListHandler.h:34:0,
                 from AdunCellListHandler.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunCellListHandler.m: In function '-[AdCellListHandler _handleSystemContentsChange:]':
AdunCellListHandler.m:320:1: warning: unused parameter 'aNotification' [-Wunused-parameter]
 {
 ^
AdunCellListHandler.m: In function '-[AdCellListHandler createList]':
AdunCellListHandler.m:391:17: warning: variable 'cell' set but not used [-Wunused-but-set-variable]
  int atomIndex, cell, holder;
                 ^
gcc AdunSimpleListHandler.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSimpleListHandler.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSimpleListHandler.h:29,
                 from AdunSimpleListHandler.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSimpleListHandler.m: In function '-[AdSimpleListHandler _handleSystemContentsChange:]':
AdunSimpleListHandler.m:93:1: warning: unused parameter 'aNotification' [-Wunused-parameter]
 {
 ^
gcc AdunLinkedList.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunLinkedList.m.o
In file included from ../Headers/AdunKernel/AdunLinkedList.h:29:0,
                 from AdunLinkedList.m:23:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunLinkedList.m: In function '-[AdLinkedList _reinsertElement:]':
AdunLinkedList.m:122:7: warning: variable 'firstElement' set but not used [-Wunused-but-set-variable]
  BOOL firstElement, lastElement;
       ^
gcc AdunListHandler.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunListHandler.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from AdunListHandler.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunListHandler.m: In function '-[AdListHandler initWithSystem:allowedPairs:cutoff:]':
AdunListHandler.m:27:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunListHandler.m:27:1: warning: unused parameter 'anArray' [-Wunused-parameter]
AdunListHandler.m:27:1: warning: unused parameter 'aDouble' [-Wunused-parameter]
AdunListHandler.m: In function '-[AdListHandler setCutoff:]':
AdunListHandler.m:44:1: warning: unused parameter 'aValue' [-Wunused-parameter]
 {
 ^
AdunListHandler.m: In function '-[AdListHandler setAllowedPairs:]':
AdunListHandler.m:57:1: warning: unused parameter 'anArray' [-Wunused-parameter]
 {
 ^
AdunListHandler.m: In function '-[AdListHandler setDelegate:]':
AdunListHandler.m:84:1: warning: unused parameter 'delegate' [-Wunused-parameter]
 {
 ^
AdunListHandler.m: In function '-[AdListHandler setSystem:]':
AdunListHandler.m:97:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
gcc AdunDynamics.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunDynamics.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from AdunDynamics.m:25:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunDynamics.m: In function '-[AdDynamics object:willBeginWritingToMatrix:]':
AdunDynamics.m:439:1: warning: unused parameter 'object' [-Wunused-parameter]
 {
 ^
AdunDynamics.m: In function '-[AdDynamics object:didFinishWritingToMatrix:]':
AdunDynamics.m:453:1: warning: unused parameter 'object' [-Wunused-parameter]
 {
 ^
gcc AdunInteractionSystem.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunInteractionSystem.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunInteractionSystem.h:28,
                 from AdunInteractionSystem.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunInteractionSystem.m: In function '-[AdInteractionSystem indexSetArrayForCategory:]':
AdunInteractionSystem.m:495:1: warning: unused parameter 'category' [-Wunused-parameter]
 {
 ^
gcc AdunSystem.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSystem.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from AdunSystem.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSystem.m: In function '-[AdSystem validateMemento:]':
AdunSystem.m:313:1: warning: unused parameter 'aMemento' [-Wunused-parameter]
 {
 ^
gcc AdunSystemCollection.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSystemCollection.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from AdunSystemCollection.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunHarmonicConstraintTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunHarmonicConstraintTerm.h:29,
                 from AdunHarmonicConstraintTerm.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:contrainingElementsMatchingSelectionString:]':
AdunHarmonicConstraintTerm.m:48:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'forceConstant' [-Wunused-parameter]
AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'selectionString' [-Wunused-parameter]
AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:container:constraintType:]':
AdunHarmonicConstraintTerm.m:132:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:constrainingElements:]':
AdunHarmonicConstraintTerm.m:141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setExternalForceMatrix:]':
AdunHarmonicConstraintTerm.m:234:1: warning: unused parameter 'matrix' [-Wunused-parameter]
 {
 ^
AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setSystem:]':
AdunHarmonicConstraintTerm.m:249:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
gcc AdunSCAAS.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSCAAS.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSCAAS.h:37,
                 from AdunSCAAS.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSCAAS.m: In function '-[AdSCAAS _applyPolarisationConstraint]':
AdunSCAAS.m:518:35: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable]
  double** velocities, **forces, **coordinates;
                                   ^
AdunSCAAS.m:518:11: warning: variable 'velocities' set but not used [-Wunused-but-set-variable]
  double** velocities, **forces, **coordinates;
           ^
AdunSCAAS.m: In function '-[AdSCAAS setExternalForceMatrix:]':
AdunSCAAS.m:637:1: warning: unused parameter 'matrix' [-Wunused-parameter]
 {
 ^
gcc AdunNonbondedTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunNonbondedTerm.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunNonbondedTerm.h:28,
                 from AdunNonbondedTerm.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:]':
AdunNonbondedTerm.m:31:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:cutoff:updateInterval:nonbondedPairs:externalForceMatrix:]':
AdunNonbondedTerm.m:41:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m:41:1: warning: unused parameter 'aDouble' [-Wunused-parameter]
AdunNonbondedTerm.m:41:1: warning: unused parameter 'anInt' [-Wunused-parameter]
AdunNonbondedTerm.m:41:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter]
AdunNonbondedTerm.m:41:1: warning: unused parameter 'matrix' [-Wunused-parameter]
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm handlerDidUpdateList:]':
AdunNonbondedTerm.m:82:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm electrostaticEnergy]':
AdunNonbondedTerm.m:89:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesEnergy]':
AdunNonbondedTerm.m:94:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm energy]':
AdunNonbondedTerm.m:99:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesType]':
AdunNonbondedTerm.m:104:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm permittivity]':
AdunNonbondedTerm.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setPermittivity:]':
AdunNonbondedTerm.m:112:1: warning: unused parameter 'aDouble' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm cutoff]':
AdunNonbondedTerm.m:119:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setCutoff:]':
AdunNonbondedTerm.m:122:1: warning: unused parameter 'aDouble' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm updateInterval]':
AdunNonbondedTerm.m:129:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setUpdateInterval:]':
AdunNonbondedTerm.m:132:1: warning: unused parameter 'anInt' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setExternalForceMatrix:]':
AdunNonbondedTerm.m:137:1: warning: unused parameter 'matrix' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm forces]':
AdunNonbondedTerm.m:144:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm usesExternalForceMatrix]':
AdunNonbondedTerm.m:149:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setSystem:]':
AdunNonbondedTerm.m:152:1: warning: unused parameter 'anObject' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm system]':
AdunNonbondedTerm.m:159:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateEnergy]':
AdunNonbondedTerm.m:164:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateForces]':
AdunNonbondedTerm.m:169:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setNonbondedPairs:]':
AdunNonbondedTerm.m:172:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter]
 {
 ^
AdunNonbondedTerm.m: In function '-[AdNonbondedTerm nonbondedPairs]':
AdunNonbondedTerm.m:179:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
gcc AdunPureNonbondedTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunPureNonbondedTerm.m.o
In file included from ../../Base/AdForceFieldFunctions.h:33:0,
                 from ../Headers/AdunKernel/AdunPureNonbondedTerm.h:26,
                 from AdunPureNonbondedTerm.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidUpdateList:]':
AdunPureNonbondedTerm.m:488:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidInvalidateList:]':
AdunPureNonbondedTerm.m:493:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidHandleContentChange:]':
AdunPureNonbondedTerm.m:498:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm copyWithZone:]':
AdunPureNonbondedTerm.m:812:1: warning: unused parameter 'aZone' [-Wunused-parameter]
 {
 ^
gcc AdunGRFNonbondedTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunGRFNonbondedTerm.m.o
In file included from ../../Base/AdForceFieldFunctions.h:33:0,
                 from ../Headers/AdunKernel/AdunGRFNonbondedTerm.h:26,
                 from AdunGRFNonbondedTerm.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidUpdateList:]':
AdunGRFNonbondedTerm.m:521:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidInvalidateList:]':
AdunGRFNonbondedTerm.m:526:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidHandleContentChange:]':
AdunGRFNonbondedTerm.m:531:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm copyWithZone:]':
AdunGRFNonbondedTerm.m:848:1: warning: unused parameter 'aZone' [-Wunused-parameter]
 {
 ^
gcc AdunShiftedNonbondedTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o
In file included from ../../Base/AdForceFieldFunctions.h:33:0,
                 from ../Headers/AdunKernel/AdunShiftedNonbondedTerm.h:26,
                 from AdunShiftedNonbondedTerm.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidUpdateList:]':
AdunShiftedNonbondedTerm.m:495:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidInvalidateList:]':
AdunShiftedNonbondedTerm.m:500:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidHandleContentChange:]':
AdunShiftedNonbondedTerm.m:505:1: warning: unused parameter 'handler' [-Wunused-parameter]
 {
 ^
AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm copyWithZone:]':
AdunShiftedNonbondedTerm.m:795:1: warning: unused parameter 'aZone' [-Wunused-parameter]
 {
 ^
gcc AdunMultithreadedNonbondedTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunNonbondedTerm.h:28,
                 from ../Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h:24,
                 from AdunMultithreadedNonbondedTerm.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm _dividePairs:]':
AdunMultithreadedNonbondedTerm.m:130:7: warning: unused variable 'forward' [-Wunused-variable]
  BOOL forward;
       ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm evaluateForces]':
AdunMultithreadedNonbondedTerm.m:295:5: warning: unused variable 'threadedObj' [-Wunused-variable]
  id threadedObj;
     ^
AdunMultithreadedNonbondedTerm.m:293:15: warning: unused variable 'finishedThreads' [-Wunused-variable]
  int i, j, k, finishedThreads = 0;
               ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm updateTerms]':
AdunMultithreadedNonbondedTerm.m:327:5: warning: unused variable 'threadedObj' [-Wunused-variable]
  id threadedObj;
     ^
AdunMultithreadedNonbondedTerm.m:326:12: warning: unused variable 'forces1' [-Wunused-variable]
  AdMatrix* forces1;
            ^
AdunMultithreadedNonbondedTerm.m:325:15: warning: unused variable 'finishedThreads' [-Wunused-variable]
  int i, j, k, finishedThreads = 0;
               ^
AdunMultithreadedNonbondedTerm.m:325:12: warning: unused variable 'k' [-Wunused-variable]
  int i, j, k, finishedThreads = 0;
            ^
AdunMultithreadedNonbondedTerm.m:325:9: warning: unused variable 'j' [-Wunused-variable]
  int i, j, k, finishedThreads = 0;
         ^
AdunMultithreadedNonbondedTerm.m:325:6: warning: unused variable 'i' [-Wunused-variable]
  int i, j, k, finishedThreads = 0;
      ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdNonbondedWorkerThreadManager init]':
AdunMultithreadedNonbondedTerm.m:411:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
AdunMultithreadedNonbondedTerm.m:406:5: warning: unused variable 'proxy' [-Wunused-variable]
  id proxy;
     ^
AdunMultithreadedNonbondedTerm.m:404:21: warning: unused variable 'receivePort' [-Wunused-variable]
  NSPort *sendPort, *receivePort;
                     ^
AdunMultithreadedNonbondedTerm.m:404:10: warning: unused variable 'sendPort' [-Wunused-variable]
  NSPort *sendPort, *receivePort;
          ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread initWithThreadManager:]':
AdunMultithreadedNonbondedTerm.m:576:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread handlePortMessage:]':
AdunMultithreadedNonbondedTerm.m:636:1: warning: unused parameter 'portMessage' [-Wunused-parameter]
 {
 ^
gcc AdunSmoothedGBTerm.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSmoothedGBTerm.m.o
In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0,
                 from AdunSmoothedGBTerm.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm initWithSystem:nonbondedTerm:smoothingLength:solventPermittivity:tensionCoefficient:]':
AdunSmoothedGBTerm.m:72:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
AdunSmoothedGBTerm.m:78:25: warning: operation on 'self->totalPairESTPotential' may be undefined [-Wsequence-point]
   totalPairESTPotential = totalPairESTPotential = totalNonpolarPotential = 0;
                         ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm _handleSystemContentsChange:]':
AdunSmoothedGBTerm.m:181:1: warning: unused parameter 'aNotification' [-Wunused-parameter]
 {
 ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm calculateBornRadii]':
AdunSmoothedGBTerm.m:243:20: warning: unused variable 'end' [-Wunused-variable]
  struct tms start, end;
                    ^
AdunSmoothedGBTerm.m:243:13: warning: unused variable 'start' [-Wunused-variable]
  struct tms start, end;
             ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) evaluateForces]':
AdunSmoothedGBTerm.m:300:29: warning: unused variable 'separation' [-Wunused-variable]
  double valueOne, valueTwo, separation;
                             ^
AdunSmoothedGBTerm.m:300:19: warning: unused variable 'valueTwo' [-Wunused-variable]
  double valueOne, valueTwo, separation;
                   ^
AdunSmoothedGBTerm.m:300:9: warning: unused variable 'valueOne' [-Wunused-variable]
  double valueOne, valueTwo, separation;
         ^
AdunSmoothedGBTerm.m:298:15: warning: unused variable 'atomTwo' [-Wunused-variable]
  int atomOne, atomTwo;
               ^
AdunSmoothedGBTerm.m:298:6: warning: unused variable 'atomOne' [-Wunused-variable]
  int atomOne, atomTwo;
      ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setExternalForceMatrix:]':
AdunSmoothedGBTerm.m:415:1: warning: unused parameter 'matrix' [-Wunused-parameter]
 {
 ^
AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setSystem:]':
AdunSmoothedGBTerm.m:425:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
gcc AdGBSWTermIntegrationMethods.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o
In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0,
                 from AdGBSWTermIntegrationMethods.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdGBSWTermIntegrationMethods.m: In function '-[AdSmoothedGBTerm(LookupTableMethods) _createLookupTable]':
AdGBSWTermIntegrationMethods.m:270:18: warning: unused variable 'gridCutSquared' [-Wunused-variable]
  double gridCut, gridCutSquared, overlapCut;
                  ^
AdGBSWTermIntegrationMethods.m:267:17: warning: unused variable 'atomIndex' [-Wunused-variable]
  int gridIndex, atomIndex, numberGridPoints;
                 ^
gcc AdGBSWTermBornRadiiMethods.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o
In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0,
                 from AdGBSWTermBornRadiiMethods.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _calculateOptimisedAtomicRadii:]':
AdGBSWTermBornRadiiMethods.m:180:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(residue = [residueEnum nextObject])
  ^
AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _initBornRadiiVariables]':
AdGBSWTermBornRadiiMethods.m:216:22: warning: unused variable 'paramsTwo' [-Wunused-variable]
  double* paramsOne, *paramsTwo;
                      ^
AdGBSWTermBornRadiiMethods.m:216:10: warning: unused variable 'paramsOne' [-Wunused-variable]
  double* paramsOne, *paramsTwo;
          ^
AdGBSWTermBornRadiiMethods.m:215:6: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusDerivative) _calculateDerivativesWithRespectToAtom:]':
AdGBSWTermBornRadiiMethods.m:571:42: warning: unused variable 'index' [-Wunused-variable]
  int gridPointIndex, numberOfNeighbours, index;
                                          ^
AdGBSWTermBornRadiiMethods.m: In function 'AdPrivateVEF':
AdGBSWTermBornRadiiMethods.m:890:28: warning: unused variable 'checkVal' [-Wunused-variable]
  double smoothingBoundary, checkVal;
                            ^
AdGBSWTermBornRadiiMethods.m:890:9: warning: unused variable 'smoothingBoundary' [-Wunused-variable]
  double smoothingBoundary, checkVal;
         ^
AdGBSWTermBornRadiiMethods.m:889:9: warning: unused variable 'j' [-Wunused-variable]
  int i, j, index, count;
         ^
gcc AdunForceField.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunForceField.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunForceField.h:30,
                 from AdunForceField.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunForceField.m: In function '-[AdForceField initWithSystem:]':
AdunForceField.m:27:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField evaluateForcesDueToElements:]':
AdunForceField.m:40:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField forces]':
AdunForceField.m:53:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField totalEnergy]':
AdunForceField.m:69:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField evaluateEnergiesUsingInteractionsInvolvingElements:]':
AdunForceField.m:80:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField system]':
AdunForceField.m:93:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField setSystem:]':
AdunForceField.m:96:1: warning: unused parameter 'object' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField arrayOfEnergiesForTerms:notFoundMarker:]':
AdunForceField.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m:104:1: warning: unused parameter 'terms' [-Wunused-parameter]
 {
 ^
AdunForceField.m:104:1: warning: unused parameter 'anObject' [-Wunused-parameter]
AdunForceField.m: In function '-[AdForceField dictionaryOfEnergiesForTerms:]':
AdunForceField.m:117:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m:112:1: warning: unused parameter 'array' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField availableTerms]':
AdunForceField.m:125:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField activatedTerms]':
AdunForceField.m:133:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField deactivatedTerms]':
AdunForceField.m:141:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunForceField.m: In function '-[AdForceField addCustomTerm:withName:]':
AdunForceField.m:144:1: warning: unused parameter 'object' [-Wunused-parameter]
 {
 ^
AdunForceField.m:144:1: warning: unused parameter 'name' [-Wunused-parameter]
AdunForceField.m: In function '-[AdForceField addCustomTerms:]':
AdunForceField.m:152:1: warning: unused parameter 'aDict' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField removeCustomTermWithName:]':
AdunForceField.m:160:1: warning: unused parameter 'name' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField deactivateTerm:]':
AdunForceField.m:168:1: warning: unused parameter 'termName' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField deactivateTermsWithNames:]':
AdunForceField.m:176:1: warning: unused parameter 'names' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField activateTerm:]':
AdunForceField.m:184:1: warning: unused parameter 'termName' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField activateTermsWithNames:]':
AdunForceField.m:192:1: warning: unused parameter 'names' [-Wunused-parameter]
 {
 ^
AdunForceField.m: In function '-[AdForceField accelerations]':
AdunForceField.m:205:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
gcc AdunMolecularMechanicsForceField.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o
In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0,
                 from AdunMolecularMechanicsForceField.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunMolecularMechanicsForceField.m: In function '+[AdMolecularMechanicsForceField classForForceField:]':
AdunMolecularMechanicsForceField.m:135:3: warning: @interface of class 'AdEnzymixForceField' not found
   return [AdEnzymixForceField class];
   ^
AdunMolecularMechanicsForceField.m:140:3: warning: @interface of class 'AdEnzymixForceField' not found
   return [AdEnzymixForceField class];
   ^
AdunMolecularMechanicsForceField.m:142:3: warning: @interface of class 'AdCharmmForceField' not found
   return [AdCharmmForceField class];
   ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField initWithSystem:nonbondedTerm:customTerms:]':
AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'anObject' [-Wunused-parameter]
AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'aDict' [-Wunused-parameter]
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateForcesDueToElements:]':
AdunMolecularMechanicsForceField.m:230:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter]
 {
 ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateEnergiesUsingInteractionsInvolvingElements:]':
AdunMolecularMechanicsForceField.m:242:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter]
 {
 ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateFiniteDifferenceForcesForTerm:]':
AdunMolecularMechanicsForceField.m:249:12: warning: unused variable 'coordinates' [-Wunused-variable]
  AdMatrix* coordinates;
            ^
AdunMolecularMechanicsForceField.m:266:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunMolecularMechanicsForceField.m:248:1: warning: unused parameter 'term' [-Wunused-parameter]
 {
 ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField arrayOfEnergiesForTerms:notFoundMarker:]':
AdunMolecularMechanicsForceField.m:503:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(termName = [notFoundEnum nextObject])
  ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allTerms]':
AdunMolecularMechanicsForceField.m:544:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(termName = [nameEnum nextObject])
  ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allEnergies]':
AdunMolecularMechanicsForceField.m:563:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(termName = [nameEnum nextObject])
  ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField description]':
AdunMolecularMechanicsForceField.m:692:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(term = [termEnum nextObject])
   ^
AdunMolecularMechanicsForceField.m:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(term = [termEnum nextObject])
   ^
AdunMolecularMechanicsForceField.m:715:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(term = [termEnum nextObject])
   ^
AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField(PrivateInternals) _handleSystemContentsChange:]':
AdunMolecularMechanicsForceField.m:944:1: warning: unused parameter 'aNotification' [-Wunused-parameter]
 {
 ^
gcc AdunEnzymixForceField.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunEnzymixForceField.m.o
In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0,
                 from ../Headers/AdunKernel/AdunEnzymixForceField.h:27,
                 from AdunEnzymixForceField.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunEnzymixForceField.m: At top level:
AdunEnzymixForceField.m:358:1: warning: incomplete implementation of class 'AdEnzymixForceField'
 @end
 ^
AdunEnzymixForceField.m:358:1: warning: method definition for '-evaluateForcesDueToElements:' not found
gcc AdunAmberForceField.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunAmberForceField.m.o
In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0,
                 from ../Headers/AdunKernel/AdunAmberForceField.h:25,
                 from AdunAmberForceField.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunAmberForceField.m: At top level:
AdunAmberForceField.m:342:1: warning: incomplete implementation of class 'AdAmberForceField'
 @end
 ^
AdunAmberForceField.m:342:1: warning: method definition for '-evaluateForcesDueToElements:' not found
gcc AdunCharmmForceField.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunCharmmForceField.m.o
In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0,
                 from ../Headers/AdunKernel/AdunCharmmForceField.h:25,
                 from AdunCharmmForceField.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunCharmmForceField.m: At top level:
AdunCharmmForceField.m:546:1: warning: incomplete implementation of class 'AdCharmmForceField'
 @end
 ^
AdunCharmmForceField.m:546:1: warning: method definition for '-evaluateForcesDueToElements:' not found
gcc AdunForceFieldCollection.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunForceFieldCollection.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunForceField.h:30,
                 from ../Headers/AdunKernel/AdunForceFieldCollection.h:25,
                 from AdunForceFieldCollection.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunForceFieldCollection.m: In function '-[AdForceFieldCollection forceFieldsForSystems:]':
AdunForceFieldCollection.m:151:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(system = [systemEnum nextObject])
  ^
AdunForceFieldCollection.m:147:16: warning: unused variable 'forceField' [-Wunused-variable]
  AdForceField* forceField;
                ^
gcc AdunConfigurationGenerator.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunConfigurationGenerator.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from AdunConfigurationGenerator.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator production:]':
AdunConfigurationGenerator.m:128:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunConfigurationGenerator.m:125:1: warning: unused parameter 'error' [-Wunused-parameter]
 {
 ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator restartFrom:error:]':
AdunConfigurationGenerator.m:134:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunConfigurationGenerator.m:131:1: warning: unused parameter 'step' [-Wunused-parameter]
 {
 ^
AdunConfigurationGenerator.m:131:1: warning: unused parameter 'error' [-Wunused-parameter]
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator numberOfSteps]':
AdunConfigurationGenerator.m:146:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator setNumberOfSteps:]':
AdunConfigurationGenerator.m:149:1: warning: unused parameter 'aNumber' [-Wunused-parameter]
 {
 ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator currentStep]':
AdunConfigurationGenerator.m:158:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator systems]':
AdunConfigurationGenerator.m:165:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator forceFields]':
AdunConfigurationGenerator.m:172:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
gcc AdunSimulator.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunSimulator.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../Headers/AdunKernel/AdunSimulator.h:26,
                 from AdunSimulator.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSimulator.m: In function '-[AdSimulator description]':
AdunSimulator.m:154:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(component = [componentEnum nextObject])
   ^
AdunSimulator.m: In function '-[AdSimulator _simulateFrom:to:]':
AdunSimulator.m:168:12: warning: variable 'name' set but not used [-Wunused-but-set-variable]
  NSString* name;
            ^
AdunSimulator.m: In function '-[AdSimulator production:]':
AdunSimulator.m:398:2: warning: 'startDate' may be used uninitialized in this function [-Wmaybe-uninitialized]
  GSPrintf(stdout, @"\nFinish date %@. Seconds since start %.3lf", finishDate, -1*[startDate timeIntervalSinceNow]);
  ^
gcc AdunMinimiser.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMinimiser.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../Headers/AdunKernel/AdunMinimiser.h:27,
                 from AdunMinimiser.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunMinimiser.m: In function '-[AdMinimiser dealloc]':
AdunMinimiser.m:210:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [keyEnum nextObject])
  ^
AdunMinimiser.m: In function '-[AdMinimiser production:]':
AdunMinimiser.m:227:1: warning: unused parameter 'error' [-Wunused-parameter]
 {
 ^
AdunMinimiser.m: In function '-[AdMinimiser restartFrom:error:]':
AdunMinimiser.m:354:1: warning: unused parameter 'step' [-Wunused-parameter]
 {
 ^
AdunMinimiser.m:354:1: warning: unused parameter 'error' [-Wunused-parameter]
AdunMinimiser.m: In function '-[AdMinimiser setConstraints:forSystem:]':
AdunMinimiser.m:499:11: warning: unused variable 'pointer' [-Wunused-variable]
  NSValue *pointer;
           ^
AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyOfConfiguration:usingParameters:]':
AdunMinimiser.m:656:1: warning: unused parameter 'params' [-Wunused-parameter]
 {
 ^
AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyAndGradientOfConfiguration:usingParameters:energyBuffer:gradientBuffer:]':
AdunMinimiser.m:741:9: warning: unused variable 'value' [-Wunused-variable]
  double value, energy;
         ^
AdunMinimiser.m:738:1: warning: unused parameter 'params' [-Wunused-parameter]
 {
 ^
gcc AdunBerendsenThermostat.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunBerendsenThermostat.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../Headers/AdunKernel/AdunSimulator.h:26,
                 from ../Headers/AdunKernel/AdunBerendsenThermostat.h:3,
                 from AdunBerendsenThermostat.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat _removeTranslationalDOF]':
AdunBerendsenThermostat.m:14:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(system = [systemEnum nextObject])
  ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulator:willBeginProductionWithSystems:forceFields:]':
AdunBerendsenThermostat.m:136:9: warning: unused variable 'difference' [-Wunused-variable]
  double difference;
         ^
AdunBerendsenThermostat.m:135:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter]
 {
 ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformFirstVelocityUpdateForSystem:]':
AdunBerendsenThermostat.m:278:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformPositionUpdateForSystem:]':
AdunBerendsenThermostat.m:283:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidPerformPositionUpdateForSystem:]':
AdunBerendsenThermostat.m:288:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]':
AdunBerendsenThermostat.m:293:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidFinishProduction:]':
AdunBerendsenThermostat.m:298:1: warning: unused parameter 'aSimulator' [-Wunused-parameter]
 {
 ^
gcc AdunLangevinThermostat.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunLangevinThermostat.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../Headers/AdunKernel/AdunSimulator.h:26,
                 from ../Headers/AdunKernel/AdunLangevinThermostat.h:30,
                 from AdunLangevinThermostat.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _destroySystemForceMatricesAndMassArrays]':
AdunLangevinThermostat.m:119:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(valueObject = [matrixEnum nextObject])
  ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _removeTranslationalDOF]':
AdunLangevinThermostat.m:140:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(system = [systemEnum nextObject])
  ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulator:willBeginProductionWithSystems:forceFields:]':
AdunLangevinThermostat.m:231:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter]
 {
 ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidFinishProduction:]':
AdunLangevinThermostat.m:250:1: warning: unused parameter 'aSimulator' [-Wunused-parameter]
 {
 ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformPositionUpdateForSystem:]':
AdunLangevinThermostat.m:287:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidPerformPositionUpdateForSystem:]':
AdunLangevinThermostat.m:292:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]':
AdunLangevinThermostat.m:297:1: warning: unused parameter 'aSystem' [-Wunused-parameter]
 {
 ^
gcc AdunMemoryManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/Framework.obj/AdunMemoryManager.m.o
AdunMemoryManager.m: In function '-[AdMemoryManager freeDoubleMatrix:withRows:]':
AdunMemoryManager.m:284:1: warning: unused parameter 'no_rows' [-Wunused-parameter]
 {
 ^
gcc -nostdlib -r  -rdynamic     -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./obj/subproject.o obj/Framework.obj/AdFrameworkFunctions.m.o obj/Framework.obj/AdIndexSetConversions.m.o obj/Framework.obj/AdunTimer.m.o obj/Framework.obj/AdunModelObject.m.o obj/Framework.obj/AdunMatrixStructureCoder.m.o obj/Framework.obj/AdunDataMatrix.m.o obj/Framework.obj/AdunDataSet.m.o obj/Framework.obj/AdunDataSource.m.o obj/Framework.obj/AdunContainerDataSource.m.o obj/Framework.obj/AdunElementSelection.m.o obj/Framework.obj/AdunGrid.m.o obj/Framework.obj/AdunSphericalBox.m.o obj/Framework.obj/AdunEllipsoidBox.m.o obj/Framework.obj/AdunCuboidBox.m.o obj/Framework.obj/AdunMoleculeCavity.m.o obj/Framework.obj/AdunCellListHandler.m.o obj/Framework.obj/AdunSimpleListHandler.m.o obj/Framework.obj/AdunLinkedList.m.o obj/Framework.obj/AdunListHandler.m.o obj/Framework.obj/AdunDynamics.m.o obj/Framework.obj/AdunInteractionSystem.m.o obj/Framework.obj/AdunSystem.m.o obj/Framework.obj/AdunSystemCollection.m.o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o obj/Framework.obj/AdunSCAAS.m.o obj/Framework.obj/AdunNonbondedTerm.m.o obj/Framework.obj/AdunPureNonbondedTerm.m.o obj/Framework.obj/AdunGRFNonbondedTerm.m.o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o obj/Framework.obj/AdunSmoothedGBTerm.m.o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o obj/Framework.obj/AdunForceField.m.o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o obj/Framework.obj/AdunEnzymixForceField.m.o obj/Framework.obj/AdunAmberForceField.m.o obj/Framework.obj/AdunCharmmForceField.m.o obj/Framework.obj/AdunForceFieldCollection.m.o obj/Framework.obj/AdunConfigurationGenerator.m.o obj/Framework.obj/AdunSimulator.m.o obj/Framework.obj/AdunMinimiser.m.o obj/Framework.obj/AdunBerendsenThermostat.m.o obj/Framework.obj/AdunLangevinThermostat.m.o obj/Framework.obj/AdunMemoryManager.m.o ;
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all in subprojects of subproject CoreAdditions...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for subproject CoreCommands...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreCommands.obj/
gcc AdStatusCommand.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreCommands.obj/AdStatusCommand.m.o
In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../../Headers/AdunKernel/AdunSystem.h:29,
                 from ../../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../../Headers/AdunKernel/AdunCore.h:28,
                 from ../Commands/AdStatusCommand.h:25,
                 from AdStatusCommand.m:22:
../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdStatusCommand.m: In function '-[AdCore(AdStatusCommand) status:]':
AdStatusCommand.m:27:1: warning: unused parameter 'options' [-Wunused-parameter]
 {
 ^
gcc AdEndSimulationCommand.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreCommands.obj/AdEndSimulationCommand.m.o
In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../../Headers/AdunKernel/AdunSystem.h:29,
                 from ../../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../../Headers/AdunKernel/AdunCore.h:28,
                 from ../Commands/AdEndSimulationCommand.h:25,
                 from AdEndSimulationCommand.m:23:
../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdEndSimulationCommand.m: In function '-[AdCore(AdEndSimulationCommand) endSimulation:]':
AdEndSimulationCommand.m:28:1: warning: unused parameter 'options' [-Wunused-parameter]
 {
 ^
gcc -nostdlib -r  -rdynamic     -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./obj/subproject.o obj/CoreCommands.obj/AdStatusCommand.m.o obj/CoreCommands.obj/AdEndSimulationCommand.m.o ;
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making all for subproject CoreAdditions...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreAdditions.obj/
gcc AdunTemplateProcessor.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunTemplateProcessor.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunKernel.h:25,
                 from ../Headers/AdunKernel/AdunTemplateProcessor.h:25,
                 from AdunTemplateProcessor.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
gcc AdunController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunController.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunKernel.h:25,
                 from ../Headers/AdunKernel/AdunController.h:26,
                 from AdunController.m:23:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunController.m: In function '-[AdController runController]':
AdunController.m:319:23: warning: unused variable 'dict' [-Wunused-variable]
  NSMutableDictionary* dict;
                       ^
AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) stopSimulation:]':
AdunController.m:507:1: warning: unused parameter 'core' [-Wunused-parameter]
 {
 ^
AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) terminateSimulation:]':
AdunController.m:513:1: warning: unused parameter 'core' [-Wunused-parameter]
 {
 ^
gcc AdunIOManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunIOManager.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunIOManager.h:32,
                 from AdunIOManager.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunIOManager.m: In function '-[AdIOManager processCommandLine:]':
AdunIOManager.m:328:30: warning: variable 'invalidArgs' set but not used [-Wunused-but-set-variable]
  NSMutableArray* arguments, *invalidArgs;
                              ^
AdunIOManager.m: In function '-[AdIOManager loadData:]':
AdunIOManager.m:699:33: warning: unused variable 'readModeStorage' [-Wunused-variable]
  AdFileSystemSimulationStorage* readModeStorage;
                                 ^
AdunIOManager.m:698:27: warning: unused variable 'dataDirectory' [-Wunused-variable]
  NSString* templateFile, *dataDirectory;
                           ^
AdunIOManager.m:698:12: warning: unused variable 'templateFile' [-Wunused-variable]
  NSString* templateFile, *dataDirectory;
            ^
AdunIOManager.m: In function '-[AdIOManager closeAllStreams]':
AdunIOManager.m:1215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(name = [enumerator nextObject])
  ^
AdunIOManager.m: In function '-[AdIOManager(SimulationDataLoading) _loadRestartData:]':
AdunIOManager.m:1361:16: warning: unused variable 'systemEnum' [-Wunused-variable]
  NSEnumerator* systemEnum;
                ^
AdunIOManager.m:1358:6: warning: variable 'numberOfFrames' set but not used [-Wunused-but-set-variable]
  int numberOfFrames, numberOfSystems, numberOfExternalObjects;
      ^
AdunIOManager.m: In function '-[AdIOManager _createLogFilesForNewRun:]':
AdunIOManager.m:519:2: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
  freopen([errorFile cString], "w", stderr);
  ^
AdunIOManager.m:520:2: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
  freopen([logFile cString], "w", stdout);
  ^
AdunIOManager.m: In function '-[AdIOManager _setupLogFilesForContinuationRun:]':
AdunIOManager.m:600:2: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
  freopen([errorFile cString], "a", stderr);
  ^
AdunIOManager.m:601:2: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
  freopen([logFile cString], "a", stdout);
  ^
AdunIOManager.m: In function '-[AdIOManager _createSimulationOutputFiles:]':
AdunIOManager.m:867:5: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
     freopen([newLocation cString], "w", stdout);
     ^
AdunIOManager.m:894:5: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
     freopen([newLocation cString], "w", stderr);
     ^
gcc AdunFileSystemSimulationStorage.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunFileSystemSimulationStorage.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunFileSystemSimulationStorage.h:25,
                 from AdunFileSystemSimulationStorage.m:1:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunFileSystemSimulationStorage.m: In function '-[AdFileSystemSimulationStorage _checkStorage]':
AdunFileSystemSimulationStorage.m:283:7: warning: unused variable 'isDirectory' [-Wunused-variable]
  BOOL isDirectory;
       ^
gcc AdunSimulationData.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunSimulationData.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSimulationData.h:31,
                 from AdunSimulationData.m:23:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunSimulationData.m: In function '-[AdSimulationData numberOfFramesForSystem:]':
AdunSimulationData.m:482:1: warning: unused parameter 'system' [-Wunused-parameter]
 {
 ^
AdunSimulationData.m: In function '-[AdSimulationDataWriter initWithDataStorage:systems:forceFields:iterationHeader:]':
AdunSimulationData.m:573:22: warning: variable 'storedSystemCollection' set but not used [-Wunused-but-set-variable]
  AdSystemCollection* storedSystemCollection; //!< Used fo AdSimulationStorageAppendMode
                      ^
AdunSimulationData.m: In function '-[AdSimulationDataWriter _addEnergyCheckpoint]':
AdunSimulationData.m:818:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(term = [termEnum nextObject])
    ^
AdunSimulationData.m:826:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(term = [termEnum nextObject])
    ^
gcc AdunTrajectory.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunTrajectory.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunTrajectory.h:31,
                 from AdunTrajectory.m:23:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunTrajectory.m: In function '-[AdTrajectory(DataLoadingMethods) setDataStorage:]':
AdunTrajectory.m:146:12: warning: unused variable 'dataId' [-Wunused-variable]
  NSString* dataId;
            ^
AdunTrajectory.m:145:9: warning: unused variable 'size' [-Wunused-variable]
  double size;
         ^
AdunTrajectory.m: In function '-[AdMutableTrajectory initWithLocation:systems:forceFields:iterationHeader:error:]':
AdunTrajectory.m:587:22: warning: variable 'storedSystemCollection' set but not used [-Wunused-but-set-variable]
  AdSystemCollection* storedSystemCollection; //!< Used fo AdSimulationStorageAppendMode
                      ^
AdunTrajectory.m:586:16: warning: unused variable 'dataReader' [-Wunused-variable]
  AdTrajectory* dataReader;
                ^
AdunTrajectory.m:585:33: warning: unused variable 'tempStorage' [-Wunused-variable]
  AdFileSystemSimulationStorage* tempStorage; //!< Used for AdSimulationStorageAppendMode
                                 ^
AdunTrajectory.m: In function '-[AdMutableTrajectory _addEnergyCheckpoint]':
AdunTrajectory.m:860:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(term = [termEnum nextObject])
    ^
AdunTrajectory.m:868:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(term = [termEnum nextObject])
    ^
AdunTrajectory.m: At top level:
AdunTrajectory.m:1268:1: warning: incomplete implementation of class 'AdMutableTrajectory'
 @end 
 ^
AdunTrajectory.m:1268:1: warning: method definition for '-updateSystems' not found
gcc AdunCheckpointManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunCheckpointManager.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from ../Headers/AdunKernel/AdunFileSystemSimulationStorage.h:25,
                 from ../Headers/AdunKernel/AdunCheckpointManager.h:24,
                 from AdunCheckpointManager.m:22:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunCheckpointManager.m: In function '-[AdCheckpointManager(PrivateInternals) handleProductionStart:]':
AdunCheckpointManager.m:398:1: warning: unused parameter 'notification' [-Wunused-parameter]
 {
 ^
gcc AdunCore.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/CoreAdditions.obj/AdunCore.m.o
In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0,
                 from ../Headers/AdunKernel/AdunSystem.h:29,
                 from ../Headers/AdunKernel/AdunSystemCollection.h:25,
                 from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28,
                 from ../Headers/AdunKernel/AdunCore.h:28,
                 from AdunCore.m:24:
../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
AdunCore.m: In function '-[AdCore main:]':
AdunCore.m:408:1: warning: unused parameter 'dict' [-Wunused-parameter]
 {
 ^
AdunCore.m: In function '-[AdCore flushEnergies:]':
AdunCore.m:519:1: warning: unused parameter 'aDict' [-Wunused-parameter]
 {
 ^
AdunCore.m: In function '-[AdCore controllerResults:]':
AdunCore.m:525:1: warning: unused parameter 'options' [-Wunused-parameter]
 {
 ^
AdunCore.m: In function '-[AdCore(AdCoreInteractionModeExtensions) simulationFinished:]':
AdunCore.m:647:1: warning: unused parameter 'aNotification' [-Wunused-parameter]
 {
 ^
gcc -nostdlib -r  -rdynamic     -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./obj/subproject.o obj/CoreAdditions.obj/AdunTemplateProcessor.m.o obj/CoreAdditions.obj/AdunController.m.o obj/CoreAdditions.obj/AdunIOManager.m.o obj/CoreAdditions.obj/AdunFileSystemSimulationStorage.m.o obj/CoreAdditions.obj/AdunSimulationData.m.o obj/CoreAdditions.obj/AdunTrajectory.m.o obj/CoreAdditions.obj/AdunCheckpointManager.m.o obj/CoreAdditions.obj/AdunCore.m.o Commands/obj/subproject.o ;
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making all for framework AdunKernel...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunKernel.obj/
classes=""; \
for object_file in   ./Framework//obj/subproject.o  ./CoreAdditions//obj/subproject.o __dummy__; do \
  if [ "$object_file" != "__dummy__" ]; then \
    sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \
    classes="$classes $sym"; \
  fi; \
done; \
classlist=""; \
classarray=""; \
for f in $classes __dummy__ ; do \
  if [ "$f" != "__dummy__" ]; then \
    if [ "$classlist" = "" ]; then \
      classlist="@\"$f\""; \
      classarray="(\"$f\""; \
    else \
      classlist="$classlist, @\"$f\""; \
      classarray="$classarray, \"$f\""; \
    fi; \
  fi; \
done; \
if [ "$classlist" = "" ]; then \
  classlist="NULL"; \
  classarray="()"; \
else \
  classlist="$classlist, NULL"; \
  classarray="$classarray)"; \
fi; \
echo "$classarray" > ./derived_src/AdunKernel-class-list; \
echo "#include <Foundation/NSObject.h>" > derived_src/NSFramework_AdunKernel.m; \
echo "#include <Foundation/NSString.h>" > derived_src/NSFramework_AdunKernel.m; \
echo "@interface NSFramework_AdunKernel : NSObject" >> derived_src/NSFramework_AdunKernel.m; \
echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_AdunKernel.m; \
echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_AdunKernel.m; \
echo "@end" >> derived_src/NSFramework_AdunKernel.m; \
echo "@implementation NSFramework_AdunKernel" >> derived_src/NSFramework_AdunKernel.m; \
echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_AdunKernel.m; \
echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_AdunKernel.m; \
echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_AdunKernel.m;\
echo "@end" >> derived_src/NSFramework_AdunKernel.m
gcc derived_src/NSFramework_AdunKernel.m -c -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2  -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1  -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1  -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread  -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -std=gnu89 -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I/usr/local/include -I./Headers -I.   -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep   -o obj/AdunKernel.obj/NSFramework_AdunKernel.o
\
gcc  -shared -Wl,-soname,libAdunKernel.so.0  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 obj/AdunKernel.obj/NSFramework_AdunKernel.o Framework//obj/subproject.o CoreAdditions//obj/subproject.o   -L/usr/local/lib -L../Base/./obj -L/usr/local/lib    -L/usr/local/lib -L/usr/lib   -ladun_base -lgsl -lgslcblas -lm -lgnustep-base -lobjc  && (cd ./AdunKernel.framework/Versions/0/.; rm -f libAdunKernel.so; if [ "libAdunKernel.so.0" != "libAdunKernel.so.0.13" ]; then rm -f libAdunKernel.so.0; ln -s libAdunKernel.so.0.13 libAdunKernel.so.0; fi; ln -s libAdunKernel.so.0 libAdunKernel.so; ) || rm -f ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 ; \
(cd ./AdunKernel.framework/Versions/0/.; \
  rm -f AdunKernel; \
  ln -s libAdunKernel.so AdunKernel) \

for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./AdunKernel.framework/Versions/0/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
for subproject in Framework/ CoreAdditions/; do \
  if [ -d $subproject/Resources/Subproject ]; then \
    for f in $subproject/Resources/Subproject/*; do \
      if [ $f != $subproject'/Resources/Subproject/*' ]; then \
        cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \
      fi; \
    done; \
  fi; \
done
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"AdunKernel\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"AdunKernel\";"; \
  echo "  Classes = "; \
  cat ./derived_src/AdunKernel-class-list; \
  echo "  ;"; \
  echo "}") >AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist
if [ -r "AdunKernel-Info.plist" ]; then \
   plmerge AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist AdunKernel-Info.plist; \
 fi
cd ./AdunKernel.framework/.; \
rm -f AdunKernel libAdunKernel.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./AdunKernel short` \
        AdunKernel; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libAdunKernel.so short` \
        libAdunKernel.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
/usr/share/GNUstep/Makefiles/mkinstalldirs Resources
Making all for tool AdunCore...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunCore.obj/
gcc main.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -IComponents/ -IFramework/ -IAdunKernel/Headers -I/usr/local/include -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/AdunCore.obj/main.m.o
In file included from AdunKernel/Headers/AdunKernel/AdunListHandler.h:26:0,
                 from AdunKernel/Headers/AdunKernel/AdunSystem.h:29,
                 from AdunKernel/Headers/AdunKernel/AdFrameworkFunctions.h:6,
                 from AdunKernel/Headers/AdunKernel/AdunKernel.h:25,
                 from AdunKernel/Headers/AdunKernel/AdunController.h:26,
                 from main.m:12:
./Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd':
./Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter]
 extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index)
                                                                                          ^
main.m: In function 'registerDefaults':
main.m:185:33: warning: unused parameter 'error' [-Wunused-parameter]
 BOOL registerDefaults(NSError** error)
                                 ^
main.m: In function 'main':
main.m:222:14: warning: unused variable 'fileName' [-Wunused-variable]
  id results, fileName;
              ^
main.m:222:5: warning: unused variable 'results' [-Wunused-variable]
  id results, fileName;
     ^
main.m:213:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char** argv)
              ^
main.m:213:27: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char** argv)
                           ^
gcc  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -fgnu-runtime -o obj/AdunCore \
	./obj/AdunCore.obj/main.m.o \
	  -L/usr/local/lib -LBase/./obj -LAdunKernel/AdunKernel.framework/Versions/Current -L/opt/intel/lib     -L/usr/local/lib -L/usr/lib   -lAdunKernel -ladun_base  -lgnustep-base    -lobjc   -lm
/usr/share/GNUstep/Makefiles/mkinstalldirs Resources/AdunCore
make[1]: Leaving directory '/<<PKGBUILDDIR>>/Kernel'
Making all in MolTalk/ ...
make[1]: Entering directory '/<<PKGBUILDDIR>>/MolTalk'
Making build-headers for framework MolTalk...
/usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Headers
/usr/bin/install -c -p  -m 644 MolTalk.h MolTalk.framework/Versions/3/Headers/MolTalk.h
/usr/bin/install -c -p  -m 644 MTAtom.h MolTalk.framework/Versions/3/Headers/MTAtom.h
/usr/bin/install -c -p  -m 644 MTAlPos.h MolTalk.framework/Versions/3/Headers/MTAlPos.h
/usr/bin/install -c -p  -m 644 MTChain.h MolTalk.framework/Versions/3/Headers/MTChain.h
/usr/bin/install -c -p  -m 644 MTCoordinates.h MolTalk.framework/Versions/3/Headers/MTCoordinates.h
/usr/bin/install -c -p  -m 644 MTResidue.h MolTalk.framework/Versions/3/Headers/MTResidue.h
/usr/bin/install -c -p  -m 644 MTSelection.h MolTalk.framework/Versions/3/Headers/MTSelection.h
/usr/bin/install -c -p  -m 644 MTStructure.h MolTalk.framework/Versions/3/Headers/MTStructure.h
/usr/bin/install -c -p  -m 644 MTString.h MolTalk.framework/Versions/3/Headers/MTString.h
/usr/bin/install -c -p  -m 644 MTStream.h MolTalk.framework/Versions/3/Headers/MTStream.h
/usr/bin/install -c -p  -m 644 MTFileStream.h MolTalk.framework/Versions/3/Headers/MTFileStream.h
/usr/bin/install -c -p  -m 644 MTCompressedFileStream.h MolTalk.framework/Versions/3/Headers/MTCompressedFileStream.h
/usr/bin/install -c -p  -m 644 MTMatrix53.h MolTalk.framework/Versions/3/Headers/MTMatrix53.h
/usr/bin/install -c -p  -m 644 MTMatrix44.h MolTalk.framework/Versions/3/Headers/MTMatrix44.h
/usr/bin/install -c -p  -m 644 MTMatrix.h MolTalk.framework/Versions/3/Headers/MTMatrix.h
/usr/bin/install -c -p  -m 644 MTVector.h MolTalk.framework/Versions/3/Headers/MTVector.h
/usr/bin/install -c -p  -m 644 MTPairwiseStrxAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseStrxAlignment.h
/usr/bin/install -c -p  -m 644 MTPairwiseSequenceAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseSequenceAlignment.h
/usr/bin/install -c -p  -m 644 MTSubstitutionMatrix.h MolTalk.framework/Versions/3/Headers/MTSubstitutionMatrix.h
/usr/bin/install -c -p  -m 644 MTStructureFactory.h MolTalk.framework/Versions/3/Headers/MTStructureFactory.h
/usr/bin/install -c -p  -m 644 MTChainFactory.h MolTalk.framework/Versions/3/Headers/MTChainFactory.h
/usr/bin/install -c -p  -m 644 MTResidueFactory.h MolTalk.framework/Versions/3/Headers/MTResidueFactory.h
/usr/bin/install -c -p  -m 644 MTAtomFactory.h MolTalk.framework/Versions/3/Headers/MTAtomFactory.h
/usr/bin/install -c -p  -m 644 MTQuaternion.h MolTalk.framework/Versions/3/Headers/MTQuaternion.h
/usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \
touch derived_src/.stamp
/usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Resources
cd ./MolTalk.framework/Versions; \
rm -f Current; \
ln -s 3 Current
cd ./MolTalk.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "MolTalk" ]; then \
    rm -f ./MolTalk; \
    ln -s ../MolTalk.framework/Headers \
                    ./MolTalk; \
  fi
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for framework MolTalk...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/MolTalk.obj/
gcc MolTalk.c -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu89-inline -D none -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MolTalk.c.o
gcc MTAtom.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTAtom.m.o
gcc MTAlPos.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTAlPos.m.o
gcc MTChain.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTChain.m.o
MTChain.m: In function '-[MTChain removeResidue:]':
MTChain.m:488:12: warning: unused variable 'p_num' [-Wunused-variable]
  NSString *p_num = [p_res key];
            ^
MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]':
MTChain.m:633:15: warning: variable 'seq2' set but not used [-Wunused-but-set-variable]
  char *seq1, *seq2;
               ^
MTChain.m:633:8: warning: variable 'seq1' set but not used [-Wunused-but-set-variable]
  char *seq1, *seq2;
        ^
MTChain.m: In function '-[MTChain deepCopy]':
MTChain.m:922:13: warning: unused variable 'prevres' [-Wunused-variable]
  MTResidue *prevres;
             ^
MTChain.m: In function '-[MTChain deepCopyCA]':
MTChain.m:997:13: warning: unused variable 'prevres' [-Wunused-variable]
  MTResidue *prevres;
             ^
MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]':
MTChain.m:727:10: warning: 'z1' may be used uninitialized in this function [-Wmaybe-uninitialized]
     tval =  z1 - [calpha z];
          ^
MTChain.m:725:10: warning: 'y1' may be used uninitialized in this function [-Wmaybe-uninitialized]
     tval =  y1 - [calpha y];
          ^
MTChain.m:723:10: warning: 'x1' may be used uninitialized in this function [-Wmaybe-uninitialized]
     tval =  x1 - [calpha x];
          ^
gcc privateMTChain.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/privateMTChain.m.o
gcc MTCoordinates.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTCoordinates.m.o
gcc MTResidue.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTResidue.m.o
MTResidue.m: In function '-[MTResidue compare:]':
MTResidue.m:156:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
gcc privateMTResidue.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/privateMTResidue.m.o
gcc MTSelection.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTSelection.m.o
gcc privateMTSelection.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/privateMTSelection.m.o
gcc MTStructure.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTStructure.m.o
In file included from /usr/include/GNUstep/Foundation/NSObjCRuntime.h:40:0,
                 from /usr/include/GNUstep/Foundation/NSObject.h:30,
                 from /usr/include/GNUstep/Foundation/FoundationErrors.h:29,
                 from /usr/include/GNUstep/Foundation/Foundation.h:33,
                 from MTStructure.h:27,
                 from MTStructure.m:28:
MTStructure.m: In function '-[MTStructure writePDBToStream:asModel:]':
MTStructure.m:447:26: warning: unused variable 'poolinner' [-Wunused-variable]
  CREATE_AUTORELEASE_POOL(poolinner);
                          ^
/usr/include/GNUstep/GNUstepBase/GNUstep.h:192:22: note: in definition of macro 'CREATE_AUTORELEASE_POOL'
   NSAutoreleasePool *X = [NSAutoreleasePool new]
                      ^
gcc privateMTStructure.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/privateMTStructure.m.o
privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeaderTo:]':
privateMTStructure.m:230:55: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                                 snprintf(tbuffer, 10, "% 4u    ", [[residue number] intValue]);
                                                       ^
privateMTStructure.m:230:55: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m: In function '-[MTStructure(Private) writePDBConectResidue:to:]':
privateMTStructure.m:414:48: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                                 sprintf(buffer,"CONECT% 5u",[[atom number] intValue]);
                                                ^
privateMTStructure.m:417:52: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                         snprintf(buffer+(i*5)+11,6,"% 5u",[[atom2 number] intValue]);
                                                    ^
privateMTStructure.m:417:52: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m: In function '-[MTStructure(Private) writePDBChain:to:fromSerial:]':
privateMTStructure.m:470:39: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                 snprintf(tbuffer, 10, "% 4u    ", [[lastres number] intValue]); /* residue number */
                                       ^
privateMTStructure.m:470:39: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m:472:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                 snprintf(buffer+6,6,"% 5u",*serial); buffer[11]=' '; *serial = *serial + 1;
                                     ^
privateMTStructure.m:472:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m: In function '-[MTStructure(Private) writePDBResidue:inChain:to:fromSerial:]':
privateMTStructure.m:534:31: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
         snprintf(tbuffer, 10, "% 4u    ", [[residue number] intValue]); /* residue number */
                               ^
privateMTStructure.m:534:31: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m:549:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                 snprintf(buffer+6,6,"% 5u",*serial); *serial = *serial + 1;
                                     ^
privateMTStructure.m:549:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeterogen:inChain:to:fromSerial:]':
privateMTStructure.m:635:31: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
         snprintf(tbuffer, 10, "% 4u    ", [[residue number] intValue]); /* residue number */
                               ^
privateMTStructure.m:635:31: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m:650:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
                 snprintf(buffer+6,6,"% 5u",*serial); *serial = *serial + 1;
                                     ^
privateMTStructure.m:650:37: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=]
privateMTStructure.m: In function '-[MTStructure(Private) backTransformation]':
privateMTStructure.m:803:16: warning: unused variable 'tSINB' [-Wunused-variable]
         double tSINB = sin(abeta);
                ^
privateMTStructure.m:802:16: warning: unused variable 'tSINA' [-Wunused-variable]
         double tSINA = sin(aalpha);
                ^
gcc MTString.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTString.m.o
gcc MTStream.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTStream.m.o
gcc MTFileStream.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTFileStream.m.o
MTFileStream.m: In function '+[MTFileStream isFileCompressed:]':
MTFileStream.m:324:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(buffer,1,2,t_file);
   ^
gcc MTCompressedFileStream.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTCompressedFileStream.m.o
gcc MTMatrix53.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTMatrix53.m.o
gcc MTMatrix44.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTMatrix44.m.o
gcc MTMatrix.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTMatrix.m.o
gcc privateMTMatrix.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/privateMTMatrix.m.o
gcc MTVector.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTVector.m.o
gcc MTPDBParser.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTPDBParser.m.o
MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]':
MTPDBParser.m:523:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable]
  double x,y,z,occ,bfact;
               ^
MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]':
MTPDBParser.m:711:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable]
  double x,y,z,occ,bfact;
               ^
MTPDBParser.m: In function '-[MTPDBParser(Private) readModres:]':
MTPDBParser.m:1416:12: warning: variable 'hname' set but not used [-Wunused-but-set-variable]
  NSString *hname; /* hetero name */
            ^
MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]':
MTPDBParser.m:638:4: warning: 'segid[3u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
    [t_residue setSegid: [NSString stringWithFormat:@"%c%c%c%c", segid[0],segid[1],segid[2],segid[3] ]];
    ^
MTPDBParser.m:638:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
MTPDBParser.m:638:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
MTPDBParser.m:638:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]':
MTPDBParser.m:831:4: warning: 'segid[3u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
    [t_residue setSegid: [NSString stringWithFormat:@"%c%c%c%c", segid[0],segid[1],segid[2],segid[3] ]];
    ^
MTPDBParser.m:831:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
MTPDBParser.m:831:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
MTPDBParser.m:831:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc MTPairwiseStrxAlignment.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o
MTPairwiseStrxAlignment.m: In function '-[MTPairwiseStrxAlignment optimize]':
MTPairwiseStrxAlignment.m:244:17: warning: variable 'preverr' set but not used [-Wunused-but-set-variable]
  double sumerr, preverr,t;
                 ^
MTPairwiseStrxAlignment.m:236:6: warning: variable 'maxaligned' set but not used [-Wunused-but-set-variable]
  int maxaligned=0;
      ^
In file included from MTPairwiseStrxAlignment.m:41:0:
MTPairwiseStrxAlignment.m: At top level:
blosum45.h:2:14: warning: 'substitutionMatrixBlosum45' defined but not used [-Wunused-variable]
 static float substitutionMatrixBlosum45[] =  {
              ^
In file included from MTPairwiseStrxAlignment.m:42:0:
blosum62.h:1:14: warning: 'substitutionMatrixBlosum62' defined but not used [-Wunused-variable]
 static float substitutionMatrixBlosum62[] =  {
              ^
In file included from MTPairwiseStrxAlignment.m:43:0:
blosum80.h:1:14: warning: 'substitutionMatrixBlosum80' defined but not used [-Wunused-variable]
 static float substitutionMatrixBlosum80[] =  {
              ^
gcc MTPairwiseSequenceAlignment.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o
MTPairwiseSequenceAlignment.m: In function '-[MTPairwiseSequenceAlignment writeFastaToStream:]':
MTPairwiseSequenceAlignment.m:932:3: warning: 'strx' may be used uninitialized in this function [-Wmaybe-uninitialized]
   [str writeString: [NSString stringWithFormat:@">%@ %c/#%d (%d)\n",[strx pdbcode],[ch code],[ch code],aacount]];
   ^
MTPairwiseSequenceAlignment.m:932:3: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc MTSubstitutionMatrix.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTSubstitutionMatrix.m.o
gcc MTStructureFactory.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTStructureFactory.m.o
gcc MTChainFactory.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTChainFactory.m.o
gcc MTResidueFactory.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTResidueFactory.m.o
gcc NSScanner+additions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/NSScanner+additions.m.o
gcc MTAtomFactory.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTAtomFactory.m.o
gcc MTQuaternion.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/MolTalk.obj/MTQuaternion.m.o
classes=""; \
for object_file in ./obj/MolTalk.obj/MTAtom.m.o ./obj/MolTalk.obj/MTAlPos.m.o ./obj/MolTalk.obj/MTChain.m.o ./obj/MolTalk.obj/privateMTChain.m.o ./obj/MolTalk.obj/MTCoordinates.m.o ./obj/MolTalk.obj/MTResidue.m.o ./obj/MolTalk.obj/privateMTResidue.m.o ./obj/MolTalk.obj/MTSelection.m.o ./obj/MolTalk.obj/privateMTSelection.m.o ./obj/MolTalk.obj/MTStructure.m.o ./obj/MolTalk.obj/privateMTStructure.m.o ./obj/MolTalk.obj/MTString.m.o ./obj/MolTalk.obj/MTStream.m.o ./obj/MolTalk.obj/MTFileStream.m.o ./obj/MolTalk.obj/MTCompressedFileStream.m.o ./obj/MolTalk.obj/MTMatrix53.m.o ./obj/MolTalk.obj/MTMatrix44.m.o ./obj/MolTalk.obj/MTMatrix.m.o ./obj/MolTalk.obj/privateMTMatrix.m.o ./obj/MolTalk.obj/MTVector.m.o ./obj/MolTalk.obj/MTPDBParser.m.o ./obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o ./obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o ./obj/MolTalk.obj/MTSubstitutionMatrix.m.o ./obj/MolTalk.obj/MTStructureFactory.m.o ./obj/MolTalk.obj/MTChainFactory.m.o ./obj/MolTalk.obj/MTResidueFactory.m.o ./obj/MolTalk.obj/NSScanner+additions.m.o ./obj/MolTalk.obj/MTAtomFactory.m.o ./obj/MolTalk.obj/MTQuaternion.m.o  __dummy__; do \
  if [ "$object_file" != "__dummy__" ]; then \
    sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \
    classes="$classes $sym"; \
  fi; \
done; \
classlist=""; \
classarray=""; \
for f in $classes __dummy__ ; do \
  if [ "$f" != "__dummy__" ]; then \
    if [ "$classlist" = "" ]; then \
      classlist="@\"$f\""; \
      classarray="(\"$f\""; \
    else \
      classlist="$classlist, @\"$f\""; \
      classarray="$classarray, \"$f\""; \
    fi; \
  fi; \
done; \
if [ "$classlist" = "" ]; then \
  classlist="NULL"; \
  classarray="()"; \
else \
  classlist="$classlist, NULL"; \
  classarray="$classarray)"; \
fi; \
echo "$classarray" > ./derived_src/MolTalk-class-list; \
echo "#include <Foundation/NSObject.h>" > derived_src/NSFramework_MolTalk.m; \
echo "#include <Foundation/NSString.h>" > derived_src/NSFramework_MolTalk.m; \
echo "@interface NSFramework_MolTalk : NSObject" >> derived_src/NSFramework_MolTalk.m; \
echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_MolTalk.m; \
echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_MolTalk.m; \
echo "@end" >> derived_src/NSFramework_MolTalk.m; \
echo "@implementation NSFramework_MolTalk" >> derived_src/NSFramework_MolTalk.m; \
echo "+ (NSString *)frameworkVersion { return @\"3\"; }" >> derived_src/NSFramework_MolTalk.m; \
echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_MolTalk.m; \
echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_MolTalk.m;\
echo "@end" >> derived_src/NSFramework_MolTalk.m
gcc derived_src/NSFramework_MolTalk.m -c -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DMT_VERSION=\"3.0.1\"  -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1  -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1  -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread  -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -DUNSAFEENV -D none  -fconstant-string-class=NSConstantString     -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep   -o obj/MolTalk.obj/NSFramework_MolTalk.o
\
gcc  -shared -Wl,-soname,libMolTalk.so.3  -rdynamic       -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 obj/MolTalk.obj/NSFramework_MolTalk.o obj/MolTalk.obj/MolTalk.c.o obj/MolTalk.obj/MTAtom.m.o obj/MolTalk.obj/MTAlPos.m.o obj/MolTalk.obj/MTChain.m.o obj/MolTalk.obj/privateMTChain.m.o obj/MolTalk.obj/MTCoordinates.m.o obj/MolTalk.obj/MTResidue.m.o obj/MolTalk.obj/privateMTResidue.m.o obj/MolTalk.obj/MTSelection.m.o obj/MolTalk.obj/privateMTSelection.m.o obj/MolTalk.obj/MTStructure.m.o obj/MolTalk.obj/privateMTStructure.m.o obj/MolTalk.obj/MTString.m.o obj/MolTalk.obj/MTStream.m.o obj/MolTalk.obj/MTFileStream.m.o obj/MolTalk.obj/MTCompressedFileStream.m.o obj/MolTalk.obj/MTMatrix53.m.o obj/MolTalk.obj/MTMatrix44.m.o obj/MolTalk.obj/MTMatrix.m.o obj/MolTalk.obj/privateMTMatrix.m.o obj/MolTalk.obj/MTVector.m.o obj/MolTalk.obj/MTPDBParser.m.o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o obj/MolTalk.obj/MTSubstitutionMatrix.m.o obj/MolTalk.obj/MTStructureFactory.m.o obj/MolTalk.obj/MTChainFactory.m.o obj/MolTalk.obj/MTResidueFactory.m.o obj/MolTalk.obj/NSScanner+additions.m.o obj/MolTalk.obj/MTAtomFactory.m.o obj/MolTalk.obj/MTQuaternion.m.o       -L/usr/local/lib -L/usr/lib   -lm -lgnustep-base -lobjc   && (cd ./MolTalk.framework/Versions/3/.; rm -f libMolTalk.so; if [ "libMolTalk.so.3" != "libMolTalk.so.3.0.1" ]; then rm -f libMolTalk.so.3; ln -s libMolTalk.so.3.0.1 libMolTalk.so.3; fi; ln -s libMolTalk.so.3 libMolTalk.so; ) || rm -f ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 ; \
(cd ./MolTalk.framework/Versions/3/.; \
  rm -f MolTalk; \
  ln -s libMolTalk.so MolTalk) \

for f in Resources/ScriptingInfo.plist; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./MolTalk.framework/Versions/3/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"MolTalk\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"MolTalk\";"; \
  echo "  Classes = "; \
  cat ./derived_src/MolTalk-class-list; \
  echo "  ;"; \
  echo "}") >MolTalk.framework/Versions/3/Resources/Info-gnustep.plist
if [ -r "MolTalk-Info.plist" ]; then \
   plmerge MolTalk.framework/Versions/3/Resources/Info-gnustep.plist MolTalk-Info.plist; \
 fi
cd ./MolTalk.framework/.; \
rm -f MolTalk libMolTalk.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./MolTalk short` \
        MolTalk; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libMolTalk.so short` \
        libMolTalk.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>/MolTalk'
Making all in UL/ ...
make[1]: Entering directory '/<<PKGBUILDDIR>>/UL'
Making all in XMLLib ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/UL/XMLLib'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for library libXMLLib...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libXMLLib.obj/
gcc XMLDocumentRoot.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/XMLDocumentRoot.m.o
gcc XMLNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/XMLNode.m.o
gcc ULParameterNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULParameterNode.m.o
gcc ULTopologyNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULTopologyNode.m.o
gcc ULClassNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULClassNode.m.o
gcc ULInteractionNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULInteractionNode.m.o
gcc ULParameterTree.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULParameterTree.m.o
gcc ULMolecularLibraryNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o
gcc ULMoleculeClassNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULMoleculeClassNode.m.o
gcc ULMoleculeNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULMoleculeNode.m.o
gcc ULConnectivityNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULConnectivityNode.m.o
gcc ULAtomListNode.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULAtomListNode.m.o
gcc ULMolecularLibraryTree.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o
gcc  -shared -Wl,-soname,libXMLLib.so.0  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./obj/libXMLLib.so.0.1 obj/libXMLLib.obj/XMLDocumentRoot.m.o obj/libXMLLib.obj/XMLNode.m.o obj/libXMLLib.obj/ULParameterNode.m.o obj/libXMLLib.obj/ULTopologyNode.m.o obj/libXMLLib.obj/ULClassNode.m.o obj/libXMLLib.obj/ULInteractionNode.m.o obj/libXMLLib.obj/ULParameterTree.m.o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o obj/libXMLLib.obj/ULMoleculeClassNode.m.o obj/libXMLLib.obj/ULMoleculeNode.m.o obj/libXMLLib.obj/ULConnectivityNode.m.o obj/libXMLLib.obj/ULAtomListNode.m.o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o   -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current    -L/usr/local/lib -L/usr/lib   -lAdunKernel -lgnustep-base -lobjc   && (cd ./obj; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; )
make[2]: Leaving directory '/<<PKGBUILDDIR>>/UL/XMLLib'
Making all in ULFramework ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making build-headers for framework ULFramework...
/usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Headers
/usr/bin/install -c -p  -m 644 ULFrameworkFunctions.h ULFramework.framework/Versions/0/Headers/ULFrameworkFunctions.h
/usr/bin/install -c -p  -m 644 ULFrameworkDefinitions.h ULFramework.framework/Versions/0/Headers/ULFrameworkDefinitions.h
/usr/bin/install -c -p  -m 644 PDBConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/PDBConfigurationBuilder.h
/usr/bin/install -c -p  -m 644 ULConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/ULConfigurationBuilder.h
/usr/bin/install -c -p  -m 644 ULDatabaseIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseIndex.h
/usr/bin/install -c -p  -m 644 ULDatabaseSimulationIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseSimulationIndex.h
/usr/bin/install -c -p  -m 644 ULDatabaseInterface.h ULFramework.framework/Versions/0/Headers/ULDatabaseInterface.h
/usr/bin/install -c -p  -m 644 ULFileSystemDatabaseBackend.h ULFramework.framework/Versions/0/Headers/ULFileSystemDatabaseBackend.h
/usr/bin/install -c -p  -m 644 ULInteractionsBuilder.h ULFramework.framework/Versions/0/Headers/ULInteractionsBuilder.h
/usr/bin/install -c -p  -m 644 ULIOManager.h ULFramework.framework/Versions/0/Headers/ULIOManager.h
/usr/bin/install -c -p  -m 644 ULMerger.h ULFramework.framework/Versions/0/Headers/ULMerger.h
/usr/bin/install -c -p  -m 644 ULProcess.h ULFramework.framework/Versions/0/Headers/ULProcess.h
/usr/bin/install -c -p  -m 644 ULProcessManager.h ULFramework.framework/Versions/0/Headers/ULProcessManager.h
/usr/bin/install -c -p  -m 644 ULServerManager.h ULFramework.framework/Versions/0/Headers/ULServerManager.h
/usr/bin/install -c -p  -m 644 ULAnalysisManager.h ULFramework.framework/Versions/0/Headers/ULAnalysisManager.h
/usr/bin/install -c -p  -m 644 ULSimpleMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULSimpleMergerDelegate.h
/usr/bin/install -c -p  -m 644 ULSystem.h ULFramework.framework/Versions/0/Headers/ULSystem.h
/usr/bin/install -c -p  -m 644 ULSystemBuilder.h ULFramework.framework/Versions/0/Headers/ULSystemBuilder.h
/usr/bin/install -c -p  -m 644 ULSystemController.h ULFramework.framework/Versions/0/Headers/ULSystemController.h
/usr/bin/install -c -p  -m 644 ULTopologyFrameBuilder.h ULFramework.framework/Versions/0/Headers/ULTopologyFrameBuilder.h
/usr/bin/install -c -p  -m 644 ULConfigurationPlugin.h ULFramework.framework/Versions/0/Headers/ULConfigurationPlugin.h
/usr/bin/install -c -p  -m 644 ULMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULMergerDelegate.h
/usr/bin/install -c -p  -m 644 ULServerInterface.h ULFramework.framework/Versions/0/Headers/ULServerInterface.h
/usr/bin/install -c -p  -m 644 ULMenuExtensions.h ULFramework.framework/Versions/0/Headers/ULMenuExtensions.h
/usr/bin/install -c -p  -m 644 ULTemplate.h ULFramework.framework/Versions/0/Headers/ULTemplate.h
/usr/bin/install -c -p  -m 644 ULAnalysisPlugin.h ULFramework.framework/Versions/0/Headers/ULAnalysisPlugin.h
/usr/bin/install -c -p  -m 644 ULFramework.h ULFramework.framework/Versions/0/Headers/ULFramework.h
/usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \
touch derived_src/.stamp
/usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Resources
cd ./ULFramework.framework/Versions; \
rm -f Current; \
ln -s 0 Current
cd ./ULFramework.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "ULFramework" ]; then \
    rm -f ./ULFramework; \
    ln -s ../ULFramework.framework/Headers \
                    ./ULFramework; \
  fi
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for framework ULFramework...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/ULFramework.obj/
gcc ULFrameworkFunctions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULFrameworkFunctions.m.o
gcc PDBConfigurationBuilder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/PDBConfigurationBuilder.m.o
PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]':
PDBConfigurationBuilder.m:167:14: warning: variable 'residueName' set but not used [-Wunused-but-set-variable]
  id residue, residueName, residueDescription, atom;
              ^
PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder initWithMoleculeAtPath:]':
PDBConfigurationBuilder.m:435:12: warning: unused variable 'temp' [-Wunused-variable]
  NSString* temp;
            ^
PDBConfigurationBuilder.m:433:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable]
  NSString* pathExtension;
            ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier init]':
PDBConfigurationBuilder.m:866:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForEnzymix:]':
PDBConfigurationBuilder.m:931:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:934:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(residue = [residueEnum nextObject])
   ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeEnzymixStructureModifications:]':
PDBConfigurationBuilder.m:960:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:963:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(residue = [residueEnum nextObject])
   ^
PDBConfigurationBuilder.m:957:10: warning: unused variable 'atom' [-Wunused-variable]
  MTAtom* atom;
          ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _renumberHeterogensAndSolvent:]':
PDBConfigurationBuilder.m:987:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:1019:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(residue = [residueEnum nextObject])
    ^
PDBConfigurationBuilder.m:1021:5: warning: 'MTResidue' may not respond to '-setNumber:'
     [residue setNumber: [NSNumber numberWithInt: residueNumber]];
     ^
PDBConfigurationBuilder.m:1021:5: warning: (Messages without a matching method signature
PDBConfigurationBuilder.m:1021:5: warning: will be assumed to return 'id' and accept
PDBConfigurationBuilder.m:1021:5: warning: '...' as arguments.)
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _addCharmmTermini:]':
PDBConfigurationBuilder.m:1056:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:1076:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(atomName = [atomNameEnum nextObject])
   ^
PDBConfigurationBuilder.m:1106:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(residue = [residueEnum nextObject])
    ^
PDBConfigurationBuilder.m:1109:5: warning: 'MTResidue' may not respond to '-setNumber:'
     [residue setNumber: [NSNumber numberWithInt: residueNumber + 1]];
     ^
PDBConfigurationBuilder.m:1119:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(atom = [atomEnum nextObject])
   ^
PDBConfigurationBuilder.m:1141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:1157:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(atomName = [atomNameEnum nextObject])
   ^
PDBConfigurationBuilder.m:1186:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(atom = [atomEnum nextObject])
   ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForCharmm:]':
PDBConfigurationBuilder.m:1222:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:1225:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(residue = [residueEnum nextObject])
   ^
PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeCharmmStructureModifications:]':
PDBConfigurationBuilder.m:1263:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(chain = [chainEnum nextObject])
  ^
PDBConfigurationBuilder.m:1266:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(residue = [residueEnum nextObject])
   ^
PDBConfigurationBuilder.m:1260:10: warning: unused variable 'atom' [-Wunused-variable]
  MTAtom* atom;
          ^
PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _structureObjectForPDB:]':
PDBConfigurationBuilder.m:64:9: warning: 'molStruct' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return molStruct;
         ^
PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]':
PDBConfigurationBuilder.m:224:8: warning: 'residueEnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
   while((residue = [residueEnum nextObject]))
        ^
gcc ULConfigurationBuilder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULConfigurationBuilder.m.o
ULConfigurationBuilder.m: In function '+[ULConfigurationBuilder builderForMoleculeAtPath:]':
ULConfigurationBuilder.m:32:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable]
  NSString* pathExtension;
            ^
gcc ULDatabaseIndex.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULDatabaseIndex.m.o
ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeObjectsWithIds:error:]':
ULDatabaseIndex.m:378:9: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return retval;
         ^
ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeOutputReferenceToObjectWithId:fromObjectWithId:]':
ULDatabaseIndex.m:396:4: warning: 'ident' may be used uninitialized in this function [-Wmaybe-uninitialized]
    ident]];
    ^
In file included from /usr/include/GNUstep/Foundation/NSDebug.h:39:0,
                 from /usr/include/GNUstep/Foundation/Foundation.h:36,
                 from ../ULFramework/ULDatabaseIndex.h:28,
                 from ULDatabaseIndex.m:25:
ULDatabaseIndex.m: In function '-[ULDatabaseIndex initWithCoder:]':
/usr/include/GNUstep/GNUstepBase/NSDebug+GNUstepBase.h:114:5: warning: 'date' may be used uninitialized in this function [-Wmaybe-uninitialized]
     NSLog(format , ## args); } while (0)
     ^
ULDatabaseIndex.m:551:19: note: 'date' was declared here
  id lastSaveDate, date;
                   ^
In file included from /usr/include/GNUstep/Foundation/NSDebug.h:39:0,
                 from /usr/include/GNUstep/Foundation/Foundation.h:36,
                 from ../ULFramework/ULDatabaseIndex.h:28,
                 from ULDatabaseIndex.m:25:
/usr/include/GNUstep/GNUstepBase/NSDebug+GNUstepBase.h:114:5: warning: 'lastSaveDate' may be used uninitialized in this function [-Wmaybe-uninitialized]
     NSLog(format , ## args); } while (0)
     ^
ULDatabaseIndex.m:551:5: note: 'lastSaveDate' was declared here
  id lastSaveDate, date;
     ^
gcc ULDatabaseSimulationIndex.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o
gcc ULDatabaseInterface.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULDatabaseInterface.m.o
gcc ULFileSystemDatabaseBackend.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o
ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend _saveIndex:ofClass:]':
ULFileSystemDatabaseBackend.m:113:2: warning: 'file' may be used uninitialized in this function [-Wmaybe-uninitialized]
  [data writeToFile: file atomically: NO];
  ^
ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend updateMetadataForObject:inSchema:error:]':
ULFileSystemDatabaseBackend.m:889:9: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return retval;
         ^
ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectOfClass:withID:fromSchema:error:]':
ULFileSystemDatabaseBackend.m:1036:9: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return retval;
         ^
ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectsOfClass:withIDs:fromSchema:error:]':
ULFileSystemDatabaseBackend.m:1077:5: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if(retval)
     ^
gcc ULInteractionsBuilder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULInteractionsBuilder.m.o
gcc ULIOManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULIOManager.m.o
ULIOManager.m: In function '-[ULIOManager _importQuickStartFiles]':
ULIOManager.m:64:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(file = [contentsEnum nextObject])
  ^
ULIOManager.m: In function '-[NSFileManager(ULExtensions) createDirectoryAtPath:attributes:error:]':
ULIOManager.m:389:12: warning: variable 'containingDir' set but not used [-Wunused-but-set-variable]
  NSString* containingDir;
            ^
gcc ULMerger.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULMerger.m.o
ULMerger.m: In function '-[ULMerger mergeTopologyFrame:withConfiguration:error:userInfo:]':
ULMerger.m:159:49: warning: variable 'indexes' set but not used [-Wunused-but-set-variable]
  NSMutableArray* confAtomList, *frameAtomList, *indexes;
                                                 ^
gcc ULProcess.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULProcess.m.o
ULProcess.m: In function '-[ULProcess setSimulationData:]':
ULProcess.m:220:12: warning: variable 'ident' set but not used [-Wunused-but-set-variable]
  NSString* ident;
            ^
gcc ULProcessManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULProcessManager.m.o
ULProcessManager.m: In function '-[ULProcessManager optionsForCommand:process:]':
ULProcessManager.m:810:9: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return [proxy optionsForCommand: name
         ^
ULProcessManager.m: In function '-[ULProcessManager validCommandsForProcess:]':
ULProcessManager.m:825:9: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return [proxy validCommandsForProcess: process];
         ^
ULProcessManager.m: In function '-[ULProcessManager execute:error:process:]':
ULProcessManager.m:797:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return result;
         ^
ULProcessManager.m:758:14: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized]
   connection = [proxy connectionForProxy];
              ^
gcc ULServerManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULServerManager.m.o
ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _handleConnectionDidDie:]':
ULServerManager.m:84:23: warning: unused variable 'errorInfo' [-Wunused-variable]
  NSMutableDictionary* errorInfo;
                       ^
ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _removeConnectionToHost:]':
ULServerManager.m:292:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(proxy = [proxyEnum nextObject])
  ^
ULServerManager.m:265:5: warning: variable 'server' set but not used [-Wunused-but-set-variable]
  id server, proxy;
     ^
ULServerManager.m: In function '-[ULServerManager init]':
ULServerManager.m:338:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULServerManager.m:351:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(host = [hostsEnum nextObject])
   ^
ULServerManager.m: In function '-[ULServerManager dealloc]':
ULServerManager.m:378:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(host = [connectedHostsEnum nextObject])
  ^
ULServerManager.m: In function '-[ULServerManager checkPortTimeoutException:]':
ULServerManager.m:506:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(connection = [connectionEnum nextObject])
  ^
gcc ULAnalysisManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULAnalysisManager.m.o
ULAnalysisManager.m: In function '-[ULAnalysisManager _addPluginsInDirectory:]':
ULAnalysisManager.m:83:66: warning: unused variable 'resourceFilename' [-Wunused-variable]
  NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename;
                                                                  ^
ULAnalysisManager.m:83:48: warning: unused variable 'pluginOutputDir' [-Wunused-variable]
  NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename;
                                                ^
ULAnalysisManager.m:83:35: warning: unused variable 'pluginName' [-Wunused-variable]
  NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename;
                                   ^
ULAnalysisManager.m:82:32: warning: unused variable 'pluginEnum' [-Wunused-variable]
  NSEnumerator *pluginDirEnum, *pluginEnum;
                                ^
ULAnalysisManager.m:142:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
ULAnalysisManager.m: In function '-[ULAnalysisManager locationOfPlugin:]':
ULAnalysisManager.m:581:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(directory = [pluginDirEnum nextObject])
  ^
gcc ULSimpleMergerDelegate.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o
gcc ULSystem.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULSystem.m.o
gcc ULSystemBuilder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULSystemBuilder.m.o
ULSystemBuilder.m: In function '+[ULSystemBuilder initialize]':
ULSystemBuilder.m:32:5: warning: unused variable 'debugLevels' [-Wunused-variable]
  id debugLevels;
     ^
gcc ULSystemController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULSystemController.m.o
gcc ULMenuExtensions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULMenuExtensions.m.o
gcc ULTemplate.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULTemplate.m.o
ULTemplate.m: In function '-[ULTemplate validateTemplate:]':
ULTemplate.m:593:11: warning: variable 'names' set but not used [-Wunused-but-set-variable]
  NSArray* names;
           ^
ULTemplate.m: In function '-[ULTemplate(PrivateObjectAdditions) _addObjectTemplate:withName:toSection:]':
ULTemplate.m:168:5: warning: 'className' may be used uninitialized in this function [-Wmaybe-uninitialized]
     [template objectForKey: className]];
     ^
gcc ULTopologyFrameBuilder.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o
gcc ULURLDownload.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULFramework.obj/ULURLDownload.m.o
classes=""; \
for object_file in ./obj/ULFramework.obj/ULFrameworkFunctions.m.o ./obj/ULFramework.obj/PDBConfigurationBuilder.m.o ./obj/ULFramework.obj/ULConfigurationBuilder.m.o ./obj/ULFramework.obj/ULDatabaseIndex.m.o ./obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o ./obj/ULFramework.obj/ULDatabaseInterface.m.o ./obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o ./obj/ULFramework.obj/ULInteractionsBuilder.m.o ./obj/ULFramework.obj/ULIOManager.m.o ./obj/ULFramework.obj/ULMerger.m.o ./obj/ULFramework.obj/ULProcess.m.o ./obj/ULFramework.obj/ULProcessManager.m.o ./obj/ULFramework.obj/ULServerManager.m.o ./obj/ULFramework.obj/ULAnalysisManager.m.o ./obj/ULFramework.obj/ULSimpleMergerDelegate.m.o ./obj/ULFramework.obj/ULSystem.m.o ./obj/ULFramework.obj/ULSystemBuilder.m.o ./obj/ULFramework.obj/ULSystemController.m.o ./obj/ULFramework.obj/ULMenuExtensions.m.o ./obj/ULFramework.obj/ULTemplate.m.o ./obj/ULFramework.obj/ULTopologyFrameBuilder.m.o ./obj/ULFramework.obj/ULURLDownload.m.o  __dummy__; do \
  if [ "$object_file" != "__dummy__" ]; then \
    sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \
    classes="$classes $sym"; \
  fi; \
done; \
classlist=""; \
classarray=""; \
for f in $classes __dummy__ ; do \
  if [ "$f" != "__dummy__" ]; then \
    if [ "$classlist" = "" ]; then \
      classlist="@\"$f\""; \
      classarray="(\"$f\""; \
    else \
      classlist="$classlist, @\"$f\""; \
      classarray="$classarray, \"$f\""; \
    fi; \
  fi; \
done; \
if [ "$classlist" = "" ]; then \
  classlist="NULL"; \
  classarray="()"; \
else \
  classlist="$classlist, NULL"; \
  classarray="$classarray)"; \
fi; \
echo "$classarray" > ./derived_src/ULFramework-class-list; \
echo "#include <Foundation/NSObject.h>" > derived_src/NSFramework_ULFramework.m; \
echo "#include <Foundation/NSString.h>" > derived_src/NSFramework_ULFramework.m; \
echo "@interface NSFramework_ULFramework : NSObject" >> derived_src/NSFramework_ULFramework.m; \
echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_ULFramework.m; \
echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_ULFramework.m; \
echo "@end" >> derived_src/NSFramework_ULFramework.m; \
echo "@implementation NSFramework_ULFramework" >> derived_src/NSFramework_ULFramework.m; \
echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_ULFramework.m; \
echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_ULFramework.m; \
echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_ULFramework.m;\
echo "@end" >> derived_src/NSFramework_ULFramework.m
gcc derived_src/NSFramework_ULFramework.m -c -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2   -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1  -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1  -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread  -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime   -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL/XMLLib -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I../   -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep   -o obj/ULFramework.obj/NSFramework_ULFramework.o
\
gcc  -shared -Wl,-soname,libULFramework.so.0  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 obj/ULFramework.obj/NSFramework_ULFramework.o obj/ULFramework.obj/ULFrameworkFunctions.m.o obj/ULFramework.obj/PDBConfigurationBuilder.m.o obj/ULFramework.obj/ULConfigurationBuilder.m.o obj/ULFramework.obj/ULDatabaseIndex.m.o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o obj/ULFramework.obj/ULDatabaseInterface.m.o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o obj/ULFramework.obj/ULInteractionsBuilder.m.o obj/ULFramework.obj/ULIOManager.m.o obj/ULFramework.obj/ULMerger.m.o obj/ULFramework.obj/ULProcess.m.o obj/ULFramework.obj/ULProcessManager.m.o obj/ULFramework.obj/ULServerManager.m.o obj/ULFramework.obj/ULAnalysisManager.m.o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o obj/ULFramework.obj/ULSystem.m.o obj/ULFramework.obj/ULSystemBuilder.m.o obj/ULFramework.obj/ULSystemController.m.o obj/ULFramework.obj/ULMenuExtensions.m.o obj/ULFramework.obj/ULTemplate.m.o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o obj/ULFramework.obj/ULURLDownload.m.o   -L../XMLLib/obj -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L/<<PKGBUILDDIR>>/MolTalk/MolTalk.framework/Versions/Current    -L/usr/local/lib -L/usr/lib   -lAdunKernel -lMolTalk -lXMLLib -lgsl -lgslcblas -lm -lgnustep-base -lobjc  && (cd ./ULFramework.framework/Versions/0/.; rm -f libULFramework.so; if [ "libULFramework.so.0" != "libULFramework.so.0.6" ]; then rm -f libULFramework.so.0; ln -s libULFramework.so.0.6 libULFramework.so.0; fi; ln -s libULFramework.so.0 libULFramework.so; ) || rm -f ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 ; \
(cd ./ULFramework.framework/Versions/0/.; \
  rm -f ULFramework; \
  ln -s libULFramework.so ULFramework) \

for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./ULFramework.framework/Versions/0/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"ULFramework\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"ULFramework\";"; \
  echo "  Classes = "; \
  cat ./derived_src/ULFramework-class-list; \
  echo "  ;"; \
  echo "}") >ULFramework.framework/Versions/0/Resources/Info-gnustep.plist
if [ -r "ULFramework-Info.plist" ]; then \
   plmerge ULFramework.framework/Versions/0/Resources/Info-gnustep.plist ULFramework-Info.plist; \
 fi
cd ./ULFramework.framework/.; \
rm -f ULFramework libULFramework.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./ULFramework short` \
        ULFramework; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libULFramework.so short` \
        libULFramework.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making all in AdunServer ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/UL/AdunServer'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for tool AdunServer...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunServer.obj/
gcc AdServer.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I/<<PKGBUILDDIR>>/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/AdunServer.obj/AdServer.m.o
AdServer.m: In function '-[AdServer(RemoteSimulationManagement) startSimulation:]':
AdServer.m:323:18: warning: unused variable 'arguments' [-Wunused-variable]
  NSMutableArray* arguments;
                  ^
AdServer.m:321:11: warning: unused variable 'error' [-Wunused-variable]
  NSError* error = nil;
           ^
AdServer.m: In function '-[AdServer(RemoteSimulationManagement) reconnectProcess:]':
AdServer.m:424:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(message = [messageEnum nextObject])
  ^
AdServer.m: In function '-[AdServer _redirectOutput]':
AdServer.m:161:2: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
  freopen([logFile cString], "w", stderr);
  ^
gcc main.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I/<<PKGBUILDDIR>>/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/AdunServer.obj/main.m.o
main.m: In function 'main':
main.m:32:5: warning: variable 'server' set but not used [-Wunused-but-set-variable]
  id server;
     ^
gcc  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -fgnu-runtime -o obj/AdunServer \
	./obj/AdunServer.obj/AdServer.m.o ./obj/AdunServer.obj/main.m.o \
	  -L/<<PKGBUILDDIR>>/MolTalk/MolTalk.framework/Versions/Current -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current/ -L/<<PKGBUILDDIR>>/Kernel/Base/obj -L../ULFramework/ULFramework.framework/Versions/Current -L../XMLLib/obj     -L/usr/local/lib -L/usr/lib   -lXMLLib -lULFramework -ladun_base -lAdunKernel -lMolTalk  -lgnustep-base    -lobjc   -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/UL/AdunServer'
Making all in Extensions/ULApplicationScripting ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for bundle ULApplicationScripting...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/ULApplicationScripting.obj/
/usr/share/GNUstep/Makefiles/mkinstalldirs ULApplicationScripting.bundle/.
gcc STTranscript.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULApplicationScripting.obj/STTranscript.m.o
gcc ULScriptManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULApplicationScripting.obj/ULScriptManager.m.o
ULScriptManager.m: In function '-[ULScriptManager runScriptWithName:arguments:error:]':
ULScriptManager.m:204:4: warning: 'STConversation' may not respond to '+conversationWithEnvironment:language:'
    language: [scriptFile language]];
    ^
ULScriptManager.m:204:4: warning: (Messages without a matching method signature
ULScriptManager.m:204:4: warning: will be assumed to return 'id' and accept
ULScriptManager.m:204:4: warning: '...' as arguments.)
ULScriptManager.m:200:5: warning: variable 'result' set but not used [-Wunused-but-set-variable]
  id result;
     ^
gcc -shared  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./ULApplicationScripting.bundle/./ULApplicationScripting ./obj/ULApplicationScripting.obj/STTranscript.m.o ./obj/ULApplicationScripting.obj/ULScriptManager.m.o   -L/<<PKGBUILDDIR>>/UL/ULFramework/ULFramework.framework/Versions/Current -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current    -L/usr/local/lib -L/usr/lib   -lAdunKernel -lULFramework -lStepTalk   -lgnustep-gui    -lgnustep-base    -lobjc   -lm
/usr/share/GNUstep/Makefiles/mkinstalldirs ULApplicationScripting.bundle/Resources
for f in Resources/ScriptManager.gorm Resources/Scripts; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./ULApplicationScripting.bundle/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
echo "OLD_GNUSTEP_STAMP_ASTRING = _ULScriptManager-" > ./ULApplicationScripting.bundle/stamp.make
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"ULApplicationScripting\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"ULScriptManager\";"; \
  echo "}") >ULApplicationScripting.bundle/Resources/Info-gnustep.plist
if [ -r "ULApplicationScripting-Info.plist" ]; then \
  plmerge ULApplicationScripting.bundle/Resources/Info-gnustep.plist ULApplicationScripting-Info.plist; \
fi
make[2]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
Making all in Extensions/ULSQLDatabaseBackend ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for bundle ULSQLDatabaseBackend...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/ULSQLDatabaseBackend.obj/
/usr/share/GNUstep/Makefiles/mkinstalldirs ULSQLDatabaseBackend.bundle/.
gcc ULSQLDatabaseBackend.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/UL -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/ULSQLDatabaseBackend.obj/ULSQLDatabaseBackend.m.o
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend initWithClientName:database:serverType:user:password:host:]':
ULSQLDatabaseBackend.m:51:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend metadataForObjectWithId:ofClass:inSchema:]':
ULSQLDatabaseBackend.m:218:12: warning: unused variable 'tableName' [-Wunused-variable]
  NSString* tableName;
            ^
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend unarchiveObjectWithID:ofClass:fromSchema:]':
ULSQLDatabaseBackend.m:341:12: warning: unused variable 'tableName' [-Wunused-variable]
  NSString* tableName;
            ^
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend removeObjectOfClass:withID:fromSchema:]':
ULSQLDatabaseBackend.m:422:12: warning: unused variable 'tableName' [-Wunused-variable]
  NSString* tableName;
            ^
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend availableObjectsOfClass:inSchema:]':
ULSQLDatabaseBackend.m:513:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(entry = [resultEnum nextObject])
   ^
ULSQLDatabaseBackend.m:490:12: warning: unused variable 'tableName' [-Wunused-variable]
  NSString* tableName;
            ^
ULSQLDatabaseBackend.m: At top level:
ULSQLDatabaseBackend.m:590:1: warning: incomplete implementation of class 'ULSQLDatabaseBackend'
 @end
 ^
ULSQLDatabaseBackend.m:590:1: warning: method definition for '-columnMapForClass:' not found
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend metadataForObjectWithId:ofClass:inSchema:]':
ULSQLDatabaseBackend.m:258:2: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
  metadata = [NSMutableDictionary dictionaryWithObjects: [result objectAtIndex: 0]
  ^
ULSQLDatabaseBackend.m: In function '-[ULSQLDatabaseBackend unarchiveObjectWithID:ofClass:fromSchema:]':
ULSQLDatabaseBackend.m:380:2: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
  data = [[result objectAtIndex:0] objectForKey: [dict objectForKey: @"DataCol"]]; 
  ^
gcc -shared  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -o ./ULSQLDatabaseBackend.bundle/./ULSQLDatabaseBackend ./obj/ULSQLDatabaseBackend.obj/ULSQLDatabaseBackend.m.o   -L/<<PKGBUILDDIR>>/UL/ULFramework/ULFramework.framework/Versions/Current -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current    -L/usr/local/lib -L/usr/lib   -lSQLClient -lAdunKernel -lULFramework   -lgnustep-gui    -lgnustep-base    -lobjc   -lm
/usr/share/GNUstep/Makefiles/mkinstalldirs ULSQLDatabaseBackend.bundle/Resources
echo "OLD_GNUSTEP_STAMP_ASTRING = _ULSQLDatabaseBackend-" > ./ULSQLDatabaseBackend.bundle/stamp.make
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"ULSQLDatabaseBackend\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"ULSQLDatabaseBackend\";"; \
  echo "}") >ULSQLDatabaseBackend.bundle/Resources/Info-gnustep.plist
if [ -r "" ]; then \
  plmerge ULSQLDatabaseBackend.bundle/Resources/Info-gnustep.plist ; \
fi
make[2]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
Making all for app UL...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/UL.obj/
/usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/.
gcc ViewController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ViewController.m.o
ViewController.m: In function '-[ViewController init]':
ViewController.m:158:5: warning: unused variable 'icon' [-Wunused-variable]
  id icon;
     ^
ViewController.m: In function '-[ViewController awakeFromNib]':
ViewController.m:248:20: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable]
  id item, columns, ioManager;
                    ^
ViewController.m:248:11: warning: unused variable 'columns' [-Wunused-variable]
  id item, columns, ioManager;
           ^
ViewController.m:248:5: warning: unused variable 'item' [-Wunused-variable]
  id item, columns, ioManager;
     ^
ViewController.m:246:10: warning: unused variable 'mainMenu' [-Wunused-variable]
  NSMenu* mainMenu;
          ^
ViewController.m: In function '-[ViewController applicationDidFinishLaunching:]':
ViewController.m:338:23: warning: unused variable 'userInfo' [-Wunused-variable]
  NSMutableDictionary* userInfo;
                       ^
ViewController.m: In function '-[ViewController application:openFile:]':
ViewController.m:393:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
ViewController.m: In function '-[ViewController handleProcessReconnectionError:]':
ViewController.m:496:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(process = [processEnum nextObject])
  ^
ViewController.m: In function '-[ViewController validateSimulationCommand:]':
ViewController.m:629:5: warning: unused variable 'selectedItem' [-Wunused-variable]
  id selectedItem; 
     ^
ViewController.m: In function '-[ViewController validateMenuItem:]':
ViewController.m:665:5: warning: unused variable 'object' [-Wunused-variable]
  id object, objectType;
     ^
ViewController.m: In function '-[ViewController _displayFileLinux:]':
ViewController.m:747:10: warning: variable 'task' set but not used [-Wunused-but-set-variable]
  NSTask* task;
          ^
ViewController.m: In function '-[ViewController _displayFileOSX:]':
ViewController.m:771:10: warning: variable 'task' set but not used [-Wunused-but-set-variable]
  NSTask* task;
          ^
ViewController.m: In function '-[ViewController _viewLog:]':
ViewController.m:797:12: warning: unused variable 'string' [-Wunused-variable]
  NSString* string;
            ^
ViewController.m: In function '-[ViewController init]':
ViewController.m:188:3: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
   freopen([logFile cString], "w", stderr);
   ^
gcc ULSimulationCreator.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULSimulationCreator.m.o
ULSimulationCreator.m: In function '-[ULSimulationCreator _checkInputData]':
ULSimulationCreator.m:36:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(name = [externalNamesEnum nextObject])
  ^
ULSimulationCreator.m: In function '-[ULSimulationCreator _checkTemplateReferences]':
ULSimulationCreator.m:99:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(type = [externalTypeEnum nextObject])
   ^
ULSimulationCreator.m: In function '-[ULSimulationCreator init]':
ULSimulationCreator.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULSimulationCreator.m: In function '-[ULSimulationCreator tableView:objectValueForTableColumn:row:]':
ULSimulationCreator.m:379:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(type = [inputTypesEnum nextObject])
   ^
ULSimulationCreator.m:362:19: warning: unused variable 'string' [-Wunused-variable]
  NSString* name, *string;
                   ^
ULSimulationCreator.m:396:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
gcc ULPasteboard.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULPasteboard.m.o
ULPasteboard.m: In function '-[ULPasteboard init]':
ULPasteboard.m:20:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULPasteboard.m: In function '-[ULPasteboard availableTypeFromArray:]':
ULPasteboard.m:54:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(type = [arrayEnum nextObject])
  ^
gcc ULStatusTable.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULStatusTable.m.o
ULStatusTable.m: In function '-[ULStatusTable init]':
ULStatusTable.m:53:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULStatusTable.m: In function '-[ULStatusTable awakeFromNib]':
ULStatusTable.m:65:12: warning: unused variable 'welcomeString' [-Wunused-variable]
  NSString* welcomeString;
            ^
ULStatusTable.m: In function '-[ULStatusTable _tryExportProcess:toFile:overwrite:]':
ULStatusTable.m:128:2: warning: no '-exportProcess:toFile:overwrite:error:' method found
  if(![processManager exportProcess: process toFile: filename overwrite: flag error: &error])
  ^
ULStatusTable.m:128:2: warning: (Messages without a matching method signature
ULStatusTable.m:128:2: warning: will be assumed to return 'id' and accept
ULStatusTable.m:128:2: warning: '...' as arguments.)
ULStatusTable.m: In function '-[ULStatusTable tableView:objectValueForTableColumn:row:]':
ULStatusTable.m:344:5: warning: unused variable 'key' [-Wunused-variable]
  id key, process;
     ^
gcc ULViewControllerSimulationCommands.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULViewControllerSimulationCommands.m.o
ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) halt:]':
ULViewControllerSimulationCommands.m:7:6: warning: unused variable 'row' [-Wunused-variable]
  int row;
      ^
ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) restart:]':
ULViewControllerSimulationCommands.m:26:6: warning: unused variable 'row' [-Wunused-variable]
  int row;
      ^
ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) terminateProcess:]':
ULViewControllerSimulationCommands.m:44:6: warning: unused variable 'row' [-Wunused-variable]
  int row;
      ^
ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) start:]':
ULViewControllerSimulationCommands.m:62:6: warning: unused variable 'row' [-Wunused-variable]
  int row;
      ^
ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) execute:]':
ULViewControllerSimulationCommands.m:91:6: warning: unused variable 'row' [-Wunused-variable]
  int row;
      ^
gcc ULPropertiesPanel.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULPropertiesPanel.m.o
ULPropertiesPanel.m: In function '-[ULPropertiesPanel awakeFromNib]':
ULPropertiesPanel.m:98:5: warning: unused variable 'item' [-Wunused-variable]
  id item;
     ^
ULPropertiesPanel.m: In function '-[ULPropertiesPanel _displayAnnotations:]':
ULPropertiesPanel.m:289:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(annotation = [annotationEnum nextObject])
   ^
gcc ULOutlineViewDelegate.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULOutlineViewDelegate.m.o
ULOutlineViewDelegate.m: In function '+[ULOutlineViewWrapper wrapperForObject:parent:identifier:]':
ULOutlineViewDelegate.m:68:4: warning: @interface of class 'ULSelectionWrapper' not found
    return [[[ULSelectionWrapper alloc] 
    ^
ULOutlineViewDelegate.m:75:5: warning: @interface of class 'ULNodeWrapper' not found
     return [[[ULNodeWrapper alloc] 
     ^
ULOutlineViewDelegate.m:82:3: warning: @interface of class 'ULOptionsLeaf' not found
   return [[[ULOptionsLeaf alloc] 
   ^
ULOutlineViewDelegate.m: In function '-[ULNodeWrapper _setChildren]':
ULOutlineViewDelegate.m:172:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [anEnum nextObject])
  ^
ULOutlineViewDelegate.m: In function '-[ULNodeWrapper childForIdentifier:]':
ULOutlineViewDelegate.m:214:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(child = [childEnum nextObject])
  ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]':
ULOutlineViewDelegate.m:260:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [anEnum nextObject])
  ^
ULOutlineViewDelegate.m:271:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [anEnum nextObject])
  ^
ULOutlineViewDelegate.m:285:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
     while(selectedValue = [selectionEnum nextObject])
     ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForDictionary]':
ULOutlineViewDelegate.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [anEnum nextObject])
  ^
ULOutlineViewDelegate.m:341:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
     while(selectedValue = [selectionEnum nextObject])
     ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]':
ULOutlineViewDelegate.m:375:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(key = [anEnum nextObject])
   ^
ULOutlineViewDelegate.m:399:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(object = [anEnum nextObject])
   ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper initWithObject:parent:identifier:]':
ULOutlineViewDelegate.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithProperties:allowEditing:]':
ULOutlineViewDelegate.m:530:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithOptions:outlineColumnIdentifier:]':
ULOutlineViewDelegate.m:554:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineView:setObjectValue:forTableColumn:byItem:]':
ULOutlineViewDelegate.m:634:3: warning: 'NSXMLNode' may not respond to '-setValue:forChild:'
   [[item parent] setValue: object forChild: item];
   ^
ULOutlineViewDelegate.m:634:3: warning: (Messages without a matching method signature
ULOutlineViewDelegate.m:634:3: warning: will be assumed to return 'id' and accept
ULOutlineViewDelegate.m:634:3: warning: '...' as arguments.)
ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineViewSelectionDidChange:]':
ULOutlineViewDelegate.m:645:19: warning: unused variable 'i' [-Wunused-variable]
  int selectedRow, i;
                   ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]':
ULOutlineViewDelegate.m:263:4: warning: 'choiceArray' may be used uninitialized in this function [-Wmaybe-uninitialized]
    for(i=0; i<[choiceArray count]; i++)
    ^
ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]':
ULOutlineViewDelegate.m:390:2: warning: 'optionsType' may be used uninitialized in this function [-Wmaybe-uninitialized]
  if([optionsType isEqual:  @"Dict"])
  ^
gcc ULSystemViewController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULSystemViewController.m.o
ULSystemViewController.m: In function '-[ULSystemViewController init]':
ULSystemViewController.m:40:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULSystemViewController.m: In function '-[ULSystemViewController _insertString:fontType:]':
ULSystemViewController.m:102:29: warning: unused variable 'boldString' [-Wunused-variable]
  NSMutableAttributedString* boldString;
                             ^
ULSystemViewController.m: In function '-[ULSystemViewController handleNotification:]':
ULSystemViewController.m:122:10: warning: unused variable 'range' [-Wunused-variable]
  NSRange range;
          ^
ULSystemViewController.m: In function '-[ULSystemViewController open:]':
ULSystemViewController.m:251:10: warning: unused variable 'range' [-Wunused-variable]
  NSRange range;
          ^
ULSystemViewController.m: In function '-[ULSystemViewController createSystem:]':
ULSystemViewController.m:565:6: warning: unused variable 'choice' [-Wunused-variable]
  int choice;
      ^
ULSystemViewController.m:562:12: warning: unused variable 'output' [-Wunused-variable]
  NSString* output;
            ^
ULSystemViewController.m:561:12: warning: unused variable 'filePath' [-Wunused-variable]
  NSString* filePath;
            ^
ULSystemViewController.m:559:7: warning: unused variable 'cancel' [-Wunused-variable]
  BOOL cancel = NO;
       ^
ULSystemViewController.m: In function '-[ULSystemViewController(PDBDownloadAdditions) downloadFinished]':
ULSystemViewController.m:884:10: warning: unused variable 'data' [-Wunused-variable]
  NSData* data;
          ^
gcc ULDatabaseBrowser.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULDatabaseBrowser.m.o
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowserPath init]':
ULDatabaseBrowser.m:30:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser init]':
ULDatabaseBrowser.m:133:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser awakeFromNib]':
ULDatabaseBrowser.m:241:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(error = [errorEnum nextObject])
  ^
ULDatabaseBrowser.m:167:25: warning: unused variable 'client' [-Wunused-variable]
  id lastColumn, schema, client, delete;
                         ^
ULDatabaseBrowser.m:167:17: warning: unused variable 'schema' [-Wunused-variable]
  id lastColumn, schema, client, delete;
                 ^
ULDatabaseBrowser.m:166:17: warning: unused variable 'column' [-Wunused-variable]
  NSTableColumn* column;
                 ^
ULDatabaseBrowser.m:165:16: warning: unused variable 'userInfo' [-Wunused-variable]
  NSDictionary* userInfo;
                ^
ULDatabaseBrowser.m:164:16: warning: unused variable 'columnEnum' [-Wunused-variable]
  NSEnumerator* columnEnum;
                ^
ULDatabaseBrowser.m:163:41: warning: unused variable 'schemaEnum' [-Wunused-variable]
  NSEnumerator* errorEnum, *clientEnum, *schemaEnum;
                                         ^
ULDatabaseBrowser.m:163:28: warning: unused variable 'clientEnum' [-Wunused-variable]
  NSEnumerator* errorEnum, *clientEnum, *schemaEnum;
                            ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser _remove:]':
ULDatabaseBrowser.m:393:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(copy = [copyEnum nextObject])
   ^
ULDatabaseBrowser.m:435:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
     while(ref = [refEnum nextObject])
     ^
ULDatabaseBrowser.m:546:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(error = [errorEnum nextObject])
  ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser import:]':
ULDatabaseBrowser.m:864:7: warning: unused variable 'retVal' [-Wunused-variable]
  BOOL retVal;
       ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser objectsForType:]':
ULDatabaseBrowser.m:1043:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(item = [selectionEnum nextObject])
  ^
ULDatabaseBrowser.m:1059:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(error = [errorEnum nextObject])
  ^
ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser _remove:]':
ULDatabaseBrowser.m:556:4: warning: 'lastRow' may be used uninitialized in this function [-Wmaybe-uninitialized]
  if(lastRow >= [browserView numberOfRows])
    ^
gcc ULDatabaseBrowserDataDisplay.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o
ULDatabaseBrowserDataDisplay.m: In function '-[ULDatabaseBrowser(ULDatabaseBrowserDataDisplay) outlineView:child:ofItem:]':
ULDatabaseBrowserDataDisplay.m:73:2: warning: 'object' may be used uninitialized in this function [-Wmaybe-uninitialized]
  [path setItem: object forLevel: itemLevel + 1];
  ^
gcc ULAnalyser.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULAnalyser.m.o
ULAnalyser.m: In function '-[ULAnalyser awakeFromNib]':
ULAnalyser.m:119:11: warning: unused variable 'plugins' [-Wunused-variable]
  NSArray* plugins, *columns;
           ^
ULAnalyser.m:118:15: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable]
  ULIOManager* ioManager; 
               ^
ULAnalyser.m: In function '-[ULAnalyser open:]':
ULAnalyser.m:213:10: warning: unused variable 'endRange' [-Wunused-variable]
  NSRange endRange;
          ^
ULAnalyser.m: In function '-[ULAnalyser _threadedLoadSimulation:]':
ULAnalyser.m:418:5: warning: unused variable 'holder' [-Wunused-variable]
  id holder;
     ^
ULAnalyser.m: In function '-[ULAnalyser _flushProcessEnergies:]':
ULAnalyser.m:496:5: warning: variable 'result' set but not used [-Wunused-but-set-variable]
  id result;
     ^
ULAnalyser.m: In function '-[ULAnalyser _loadObject:ofType:]':
ULAnalyser.m:590:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(dataSet = [dataEnum nextObject])
    ^
ULAnalyser.m: In function '-[ULAnalyser load:]':
ULAnalyser.m:605:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(type = [availableTypeEnum nextObject])
  ^
ULAnalyser.m:611:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    while(object = [objectEnum nextObject])
    ^
ULAnalyser.m: In function '-[ULAnalyser remove:]':
ULAnalyser.m:625:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(object = [selectedObjectsEnum nextObject])
  ^
ULAnalyser.m: In function '-[ULAnalyser save:]':
ULAnalyser.m:709:3: warning: multiple methods named '-result' found
   if([[ULPropertiesPanel propertiesPanel] result])
   ^
In file included from /usr/include/GNUstep/Foundation/Foundation.h:79:0,
                 from /usr/include/GNUstep/AppKit/AppKit.h:40,
                 from ULAnalyser.h:24,
                 from ULAnalyser.m:23:
/usr/include/GNUstep/Foundation/NSInvocationOperation.h:51:1: note: using '-(id)result'
 - (id) result;
 ^
/usr/include/GNUstep/Foundation/NSInvocationOperation.h:51:1: note: also found '-(id)result'
In file included from ULStatusTable.h:26:0,
                 from ViewController.h:36,
                 from ULAnalyser.h:32,
                 from ULAnalyser.m:23:
ULPropertiesPanel.h:82:1: note: also found '-(BOOL)result'
 - (BOOL) result; 
 ^
ULAnalyser.m:681:30: warning: unused variable 'inputObjectsEnum' [-Wunused-variable]
  NSEnumerator* resultsEnum, *inputObjectsEnum;
                              ^
ULAnalyser.m:681:16: warning: unused variable 'resultsEnum' [-Wunused-variable]
  NSEnumerator* resultsEnum, *inputObjectsEnum;
                ^
ULAnalyser.m:680:17: warning: unused variable 'inputObject' [-Wunused-variable]
  AdModelObject *inputObject;
                 ^
ULAnalyser.m:679:5: warning: unused variable 'dataSet' [-Wunused-variable]
  id dataSet, databaseInterface;
     ^
ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSets:]':
ULAnalyser.m:1055:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(dataSet = [dataSetEnum nextObject])
  ^
ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSet:]':
ULAnalyser.m:1073:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(set = [dataSetEnum nextObject])
   ^
ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) setAvailableDataSets:]':
ULAnalyser.m:1138:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(dataSet = [arrayEnum nextObject])
  ^
ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) dataSetDidChange:]':
ULAnalyser.m:1183:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(dataSet = [dataSetEnum nextObject])
  ^
gcc ULAnalyserPluginExtensions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULAnalyserPluginExtensions.m.o
ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) _displayPluginFiles:]':
ULAnalyserPluginExtensions.m:47:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(fileData = [dataEnum nextObject])
  ^
ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) applyCurrentPlugin:]':
ULAnalyserPluginExtensions.m:263:2: warning: statement with no effect [-Wunused-value]
  pluginError == nil;
  ^
gcc ULAnalyserGnuplotExtensions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULAnalyserGnuplotExtensions.m.o
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) setupGnuplotInterface]':
ULAnalyserGnuplotExtensions.m:145:15: warning: unused variable 'ioManager' [-Wunused-variable]
  ULIOManager* ioManager = [ULIOManager appIOManager];
               ^
ULAnalyserGnuplotExtensions.m:144:17: warning: unused variable 'fileManager' [-Wunused-variable]
  NSFileManager* fileManager;
                 ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) writeMatrixString:]':
ULAnalyserGnuplotExtensions.m:290:16: warning: unused variable 'fileHandle' [-Wunused-variable]
  NSFileHandle* fileHandle;
                ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _outputFileForMatrix:inDataSet:columnOrder:]':
ULAnalyserGnuplotExtensions.m:333:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(row = [rowEnum nextObject])
  ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) createGnuplotFilesForDataSet:]':
ULAnalyserGnuplotExtensions.m:370:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(matrix = [matrixEnum nextObject])
  ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSet:]':
ULAnalyserGnuplotExtensions.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(matrix = [matrixEnum nextObject])
  ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSets:]':
ULAnalyserGnuplotExtensions.m:418:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(dataSet = [arrayEnum nextObject])
  ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) textView:doCommandBySelector:]':
ULAnalyserGnuplotExtensions.m:440:21: warning: unused variable 'errorString' [-Wunused-variable]
  NSString* string, *errorString, *currentMatrixName;
                     ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _previousStringFromHistory]':
ULAnalyserGnuplotExtensions.m:258:9: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return string;
         ^
ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _nextStringFromHistory]':
ULAnalyserGnuplotExtensions.m:280:9: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return string;
         ^
gcc ULAnalyserDataSetView.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULAnalyserDataSetView.m.o
ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView init]':
ULAnalyserDataSetView.m:9:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULAnalyserDataSetView.m:7:11: warning: unused variable 'error' [-Wunused-variable]
  NSError* error = nil;
           ^
ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView awakeFromNib]':
ULAnalyserDataSetView.m:58:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(column = [columnEnum nextObject]) 
  ^
ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView orderedColumnHeaders]':
ULAnalyserDataSetView.m:89:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(column = [columnEnum nextObject])
  ^
ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView _displayCurrentDataSetTable]':
ULAnalyserDataSetView.m:100:10: warning: unused variable 'range' [-Wunused-variable]
  NSRange range;
          ^
ULAnalyserDataSetView.m:99:5: warning: unused variable 'subsystem' [-Wunused-variable]
  id subsystem, newColumn, columns;
     ^
ULAnalyserDataSetView.m:98:55: warning: unused variable 'diff' [-Wunused-variable]
  int currentNumberOfColumns, requiredNumberOfColumns, diff;
                                                       ^
ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView displayData]':
ULAnalyserDataSetView.m:181:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(table = [dataSetTablesEnum nextObject])
  ^
gcc ULProgressPanel.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULProgressPanel.m.o
ULProgressPanel.m: In function '-[ULProgressPanel initWithTitle:message:progressInfo:]':
ULProgressPanel.m:48:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULProgressPanel.m: In function '-[ULProgressPanel runProgressPanel:]':
ULProgressPanel.m:128:11: warning: unused variable 'updateEvent' [-Wunused-variable]
  NSEvent* updateEvent;
           ^
ULProgressPanel.m: In function '-[ULProgressPanel _incrementFromNotification:]':
ULProgressPanel.m:216:14: warning: 'currentStep' may be used uninitialized in this function [-Wmaybe-uninitialized]
  percent =  ((double)currentStep)/totalSteps*100;
              ^
gcc ULExportPanel.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULExportPanel.m.o
ULExportPanel.m: In function '-[ULExportPanel init]':
ULExportPanel.m:43:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
gcc ULTemplateViewController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULTemplateViewController.m.o
ULTemplateViewController.m: In function '-[ULTemplateViewController _clearSectionMenus]':
ULTemplateViewController.m:38:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(sectionMenu = [sectionEnum nextObject])
  ^
ULTemplateViewController.m: In function '-[ULTemplateViewController _addComponentWithName:toSectionMenu:]':
ULTemplateViewController.m:56:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(key = [keyEnum nextObject])
  ^
ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateView]':
ULTemplateViewController.m:63:12: warning: variable 'holder' set but not used [-Wunused-but-set-variable]
  NSString* holder;
            ^
ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateWithMenuValues]':
ULTemplateViewController.m:90:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(sectionMenu = [sectionEnum nextObject])
  ^
ULTemplateViewController.m:93:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(componentName = [componentEnum nextObject])
   ^
ULTemplateViewController.m: In function '-[ULTemplateViewController init]':
ULTemplateViewController.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULTemplateViewController.m: In function '-[ULTemplateViewController _outlineViewSelectionDidChange:]':
ULTemplateViewController.m:227:6: warning: 'NSXMLNode' may not respond to '-identifier'
      [[item parent] identifier]];
      ^
ULTemplateViewController.m:227:6: warning: (Messages without a matching method signature
ULTemplateViewController.m:227:6: warning: will be assumed to return 'id' and accept
ULTemplateViewController.m:227:6: warning: '...' as arguments.)
ULTemplateViewController.m: In function '-[ULTemplateViewController awakeFromNib]':
ULTemplateViewController.m:253:12: warning: unused variable 'description' [-Wunused-variable]
  NSString* description;
            ^
ULTemplateViewController.m: In function '-[ULTemplateViewController displayTemplate:]':
ULTemplateViewController.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(section = [sectionEnum nextObject])
  ^
ULTemplateViewController.m:327:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while(name = [templateNameEnum nextObject])
   ^
gcc ULConverter.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULConverter.m.o
gcc ULExportController.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULExportController.m.o
ULExportController.m: In function '-[ULExportController init]':
ULExportController.m:52:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULExportController.m: In function '-[ULExportController _exportObjectAsBinaryArchive:toFile:]':
ULExportController.m:122:6: warning: unused variable 'selectedRow' [-Wunused-variable]
  int selectedRow;
      ^
ULExportController.m: In function '-[ULExportController export:]':
ULExportController.m:183:39: warning: variable 'extension' set but not used [-Wunused-but-set-variable]
  NSString* filename, *format, *type, *extension;
                                       ^
ULExportController.m:180:14: warning: unused variable 'index' [-Wunused-variable]
  int result, index;
              ^
ULExportController.m: In function '-[ULExportController exportObject:toFile:format:]':
ULExportController.m:249:6: warning: unused variable 'selector' [-Wunused-variable]
  SEL selector;
      ^
ULExportController.m: In function '-[ULExportController exportCurrentPasteboardObjectAs:]':
ULExportController.m:327:35: warning: variable 'extension' set but not used [-Wunused-but-set-variable]
  NSString* className, *filename, *extension;
                                   ^
ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) _saveAttributeFile:]':
ULExportController.m:423:11: warning: unused variable 'error' [-Wunused-variable]
  NSError* error = nil;
           ^
ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) createAttributeFile:]':
ULExportController.m:516:5: warning: unused variable 'attribute' [-Wunused-variable]
  id attribute, residueColumn;
     ^
ULExportController.m:514:16: warning: unused variable 'attributeEnum' [-Wunused-variable]
  NSEnumerator* attributeEnum;
                ^
ULExportController.m:512:49: warning: variable 'atomColName' set but not used [-Wunused-but-set-variable]
  NSString* name, *matrixName, *residueColName, *atomColName, *version;
                                                 ^
ULExportController.m: In function '-[ULExportController exportObject:toFile:as:]':
ULExportController.m:244:2: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized]
  [self exportObject: anObject toFile: filename format: format];
  ^
gcc ULPreferences.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULPreferences.m.o
ULPreferences.m: In function '-[ULPreferences initWithModelViewController:]':
ULPreferences.m:50:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if(self = [super init])
  ^
ULPreferences.m: In function '-[ULPreferences _convertStringToArray:]':
ULPreferences.m:195:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  while(value = [valueEnum nextObject])
  ^
ULPreferences.m: In function '-[ULPreferences setDefault:]':
ULPreferences.m:257:4: warning: 'domainName' may be used uninitialized in this function [-Wmaybe-uninitialized]
    inPersistentDomainForName: domainName];
    ^
ULPreferences.m:247:2: warning: 'defaultName' may be used uninitialized in this function [-Wmaybe-uninitialized]
  if([defaultName isEqual: @"GSAppKitUserBundles"])
  ^
gcc ULDatabaseManager.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULDatabaseManager.m.o
gcc ULInterfaceFunctions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULInterfaceFunctions.m.o
gcc ULOutlineViewAdditions.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/ULOutlineViewAdditions.m.o
gcc main.m -c \
      -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fgnu-runtime -fconstant-string-class=NSConstantString -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/Kernel -I/<<PKGBUILDDIR>>/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \
       -o obj/UL.obj/main.m.o
gcc  -rdynamic      -Wl,-z,relro -Wl,-z,now -Wl,--no-undefined -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread  -fexceptions -fgnu-runtime -o UL.app/./UL \
./obj/UL.obj/ViewController.m.o ./obj/UL.obj/ULSimulationCreator.m.o ./obj/UL.obj/ULPasteboard.m.o ./obj/UL.obj/ULStatusTable.m.o ./obj/UL.obj/ULViewControllerSimulationCommands.m.o ./obj/UL.obj/ULPropertiesPanel.m.o ./obj/UL.obj/ULOutlineViewDelegate.m.o ./obj/UL.obj/ULSystemViewController.m.o ./obj/UL.obj/ULDatabaseBrowser.m.o ./obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o ./obj/UL.obj/ULAnalyser.m.o ./obj/UL.obj/ULAnalyserPluginExtensions.m.o ./obj/UL.obj/ULAnalyserGnuplotExtensions.m.o ./obj/UL.obj/ULAnalyserDataSetView.m.o ./obj/UL.obj/ULProgressPanel.m.o ./obj/UL.obj/ULExportPanel.m.o ./obj/UL.obj/ULTemplateViewController.m.o ./obj/UL.obj/ULConverter.m.o ./obj/UL.obj/ULExportController.m.o ./obj/UL.obj/ULPreferences.m.o ./obj/UL.obj/ULDatabaseManager.m.o ./obj/UL.obj/ULInterfaceFunctions.m.o ./obj/UL.obj/ULOutlineViewAdditions.m.o ./obj/UL.obj/main.m.o   -L/opt/intel/lib  -L/usr/local/lib    -L/<<PKGBUILDDIR>>/MolTalk/MolTalk.framework/Versions/Current -L/<<PKGBUILDDIR>>/Kernel/Base/obj -L/<<PKGBUILDDIR>>/Kernel/AdunKernel/AdunKernel.framework/Versions/Current  -L./XMLLib/obj -L. -L./ULFramework/ULFramework.framework/Versions/Current   -L/usr/local/lib -L/usr/lib   -lXMLLib -lULFramework -lAdunKernel -lMolTalk -ladun_base  -lgnustep-gui    -lgnustep-base    -lobjc   -lm
/usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/Resources
echo "OLD_GNUSTEP_STAMP_ASTRING = _NSApplication---" > ./UL.app/stamp.make
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"UL\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  GSMainMarkupFile = \"\";"; \
  if [ "" != "" ]; then \
    echo "  NSIcon = \"\";"; \
  fi; \
  echo "  NSPrincipalClass = \"NSApplication\";"; \
  echo "}") >UL.app/Resources/Info-gnustep.plist
if [ -r "" ]; then \
   plmerge UL.app/Resources/Info-gnustep.plist ""; \
  fi
pl2link UL.app/Resources/Info-gnustep.plist ./UL.app/Resources/UL.desktop; \
                 chmod a+x ./UL.app/Resources/UL.desktop
for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./UL.app/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>/UL'
make: Leaving directory '/<<PKGBUILDDIR>>'
convert UL/Resources/icon.tiff -resize 32x32 adun.xpm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
	make -j1 check
make[1]: Entering directory '/<<PKGBUILDDIR>>'
This is gnustep-make 2.6.8. Type 'make print-gnustep-make-help' for help.
Making check in Kernel/ ...
Making check in Base ...
Making check for library libadun_base...
make[4]: Nothing to be done for 'internal-library-check'.
Making check in AdunKernel ...
Making check in subprojects of framework AdunKernel...
make[4]: Nothing to be done for 'check'.
make[4]: Nothing to be done for 'check'.
Making check for framework AdunKernel...
make[4]: Nothing to be done for 'internal-framework-check'.
Making check in MolTalk/ ...
Making check for framework MolTalk...
make[3]: Nothing to be done for 'internal-framework-check'.
Making check in UL/ ...
Making check in XMLLib ...
Making check for library libXMLLib...
make[4]: Nothing to be done for 'internal-library-check'.
Making check in ULFramework ...
Making check for framework ULFramework...
make[4]: Nothing to be done for 'internal-framework-check'.
Making check in AdunServer ...
make[3]: Nothing to be done for 'check'.
Making check in Extensions/ULApplicationScripting ...
make[3]: Nothing to be done for 'check'.
Making check in Extensions/ULSQLDatabaseBackend ...
make[3]: Nothing to be done for 'check'.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make install messages=yes DESTDIR=/<<PKGBUILDDIR>>/debian/tmp \
  GNUSTEP_SYSTEM_LIBRARIES=/usr/lib/adun.app \
  GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
make[2]: Entering directory '/<<PKGBUILDDIR>>'
This is gnustep-make 2.6.8. Type 'make print-gnustep-make-help' for help.
Making all in Kernel/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel'
Making all in Base ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/Base'
Making all for library libadun_base...
make[7]: Nothing to be done for 'internal-library-compile'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/Base'
Making all in AdunKernel ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
Making build-headers in subprojects of framework AdunKernel...
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
Making build-headers for subproject Framework...
make[6]: Nothing to be done for 'internal-subproject-build-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making build-headers in subprojects of subproject CoreAdditions...
make[6]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making build-headers for subproject CoreCommands...
make[7]: Nothing to be done for 'internal-subproject-build-headers'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making build-headers for subproject CoreAdditions...
make[6]: Nothing to be done for 'internal-subproject-build-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making build-headers for framework AdunKernel...
cd ./AdunKernel.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "AdunKernel" ]; then \
    rm -f ./AdunKernel; \
    ln -s ../AdunKernel.framework/Headers \
                    ./AdunKernel; \
  fi
Making all in subprojects of framework AdunKernel...
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
Making all for subproject Framework...
make[7]: Nothing to be done for 'internal-subproject-compile'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making all in subprojects of subproject CoreAdditions...
make[6]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making all for subproject CoreCommands...
make[8]: Nothing to be done for 'internal-subproject-compile'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making all for subproject CoreAdditions...
make[7]: Nothing to be done for 'internal-subproject-compile'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making all for framework AdunKernel...
make[6]: Nothing to be done for 'internal-framework-compile'.
for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./AdunKernel.framework/Versions/0/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
for subproject in Framework/ CoreAdditions/; do \
  if [ -d $subproject/Resources/Subproject ]; then \
    for f in $subproject/Resources/Subproject/*; do \
      if [ $f != $subproject'/Resources/Subproject/*' ]; then \
        cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \
      fi; \
    done; \
  fi; \
done
cd ./AdunKernel.framework/.; \
rm -f AdunKernel libAdunKernel.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./AdunKernel short` \
        AdunKernel; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libAdunKernel.so short` \
        libAdunKernel.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
Making all for tool AdunCore...
make[6]: Nothing to be done for 'internal-tool-compile'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel'
Making all in MolTalk/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/MolTalk'
Making build-headers for framework MolTalk...
cd ./MolTalk.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "MolTalk" ]; then \
    rm -f ./MolTalk; \
    ln -s ../MolTalk.framework/Headers \
                    ./MolTalk; \
  fi
Making all for framework MolTalk...
make[5]: Nothing to be done for 'internal-framework-compile'.
for f in Resources/ScriptingInfo.plist; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./MolTalk.framework/Versions/3/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
cd ./MolTalk.framework/.; \
rm -f MolTalk libMolTalk.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./MolTalk short` \
        MolTalk; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libMolTalk.so short` \
        libMolTalk.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/MolTalk'
Making all in UL/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/UL'
Making all in XMLLib ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/XMLLib'
Making all for library libXMLLib...
make[7]: Nothing to be done for 'internal-library-compile'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/XMLLib'
Making all in ULFramework ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making build-headers for framework ULFramework...
cd ./ULFramework.framework; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "ULFramework" ]; then \
    rm -f ./ULFramework; \
    ln -s ../ULFramework.framework/Headers \
                    ./ULFramework; \
  fi
Making all for framework ULFramework...
make[6]: Nothing to be done for 'internal-framework-compile'.
for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./ULFramework.framework/Versions/0/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
cd ./ULFramework.framework/.; \
rm -f ULFramework libULFramework.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./ULFramework short` \
        ULFramework; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libULFramework.so short` \
        libULFramework.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making all in AdunServer ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/AdunServer'
Making all for tool AdunServer...
make[7]: Nothing to be done for 'internal-tool-compile'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/AdunServer'
Making all in Extensions/ULApplicationScripting ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
Making all for bundle ULApplicationScripting...
make[7]: Nothing to be done for 'internal-bundle-compile'.
for f in Resources/ScriptManager.gorm Resources/Scripts; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./ULApplicationScripting.bundle/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
Making all in Extensions/ULSQLDatabaseBackend ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
Making all for bundle ULSQLDatabaseBackend...
make[7]: Nothing to be done for 'internal-bundle-compile'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
Making all for app UL...
make[6]: Nothing to be done for 'internal-app-compile'.
pl2link UL.app/Resources/Info-gnustep.plist ./UL.app/Resources/UL.desktop; \
                 chmod a+x ./UL.app/Resources/UL.desktop
for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./UL.app/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/UL'
Making install in Kernel/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/Kernel'
Making install in Base ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/Base'
Making install for library libadun_base...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.
if [ -f ./obj/libadun_base.so.0.0.1 ]; then \
  /usr/bin/install -c -p  ./obj/libadun_base.so.0.0.1 \
                     /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. ; \
  (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; ) \
fi
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep//Base
for file in AdForceFieldFunctions.h AdGeneralizedBornFunctions.h AdMatrix.h AdQuaternion.h AdSorter.h AdVector.h AdQuadratureFunctions.h AdVolumeFunctions.h AdBaseFunctions.h AdLinkedList.h  __done; do \
  if [ $file != __done ]; then \
    /usr/bin/install -c -p  -m 644 ./$file \
          /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep//Base/$file; \
  fi; \
done
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/Base'
Making install in AdunKernel ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep/Framework/Protocols
Making install in subprojects of framework AdunKernel...
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
Making install for subproject Framework...
make[6]: Nothing to be done for 'internal-subproject-install'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/Framework'
make[5]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making install in subprojects of subproject CoreAdditions...
make[6]: Entering directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making install for subproject CoreCommands...
make[7]: Nothing to be done for 'internal-subproject-install'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions/Commands'
Making install for subproject CoreAdditions...
make[6]: Nothing to be done for 'internal-subproject-install'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel/CoreAdditions'
Making install for framework AdunKernel...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks
(cd .; \
  tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list \
    AdunKernel.framework) \
    | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks; tar xf -)
cd /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep; \
rm -f AdunKernel; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Headers short` AdunKernel; \

cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.; \
rm -f libAdunKernel.so; \
rm -f libAdunKernel.so.0; \
rm -f libAdunKernel.so.0.13; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so short` libAdunKernel.so; \
if test -r "/<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/./libAdunKernel.so.0"; then \
  ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/./libAdunKernel.so.0 short` libAdunKernel.so.0; \
fi; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 short` libAdunKernel.so.0.13
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Kernel/AdunKernel'
Making install for tool AdunCore...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/bin/.
/usr/bin/install -c -p  -m 0755 \
	./obj/AdunCore \
	/<<PKGBUILDDIR>>/debian/tmp//usr/bin/.
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Tools/Resources
rm -rf /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Tools/Resources/AdunCore; \
        /usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Tools/Resources; \
(cd ./Resources; \
    tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list AdunCore) \
 | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Tools/Resources; tar xf -)
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Kernel'
Making install in MolTalk/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/MolTalk'
Making install for framework MolTalk...
(cd .; \
  tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list \
    MolTalk.framework) \
    | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks; tar xf -)
cd /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep; \
rm -f MolTalk; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/MolTalk.framework/Headers short` MolTalk; \

cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.; \
rm -f libMolTalk.so; \
rm -f libMolTalk.so.3; \
rm -f libMolTalk.so.3.0.1; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so short` libMolTalk.so; \
if test -r "/<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/./libMolTalk.so.3"; then \
  ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/./libMolTalk.so.3 short` libMolTalk.so.3; \
fi; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 short` libMolTalk.so.3.0.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/MolTalk'
Making install in UL/ ...
make[3]: Entering directory '/<<PKGBUILDDIR>>/UL'
Making install in XMLLib ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/XMLLib'
Making install for library libXMLLib...
if [ -f ./obj/libXMLLib.so.0.1 ]; then \
  /usr/bin/install -c -p  ./obj/libXMLLib.so.0.1 \
                     /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. ; \
  (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; ) \
fi
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep//XMLLib
for file in XMLDocumentRoot.h XMLNode.h XMLLib.h ULParameterNode.h ULTopologyNode.h ULClassNode.h ULInteractionNode.h ULParameterTree.h ULMolecularLibraryNode.h ULMoleculeClassNode.h ULMoleculeNode.h ULConnectivityNode.h ULAtomListNode.h ULMolecularLibraryTree.h __done; do \
  if [ $file != __done ]; then \
    /usr/bin/install -c -p  -m 644 ./$file \
          /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep//XMLLib/$file; \
  fi; \
done
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/XMLLib'
Making install in ULFramework ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making install for framework ULFramework...
(cd .; \
  tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list \
    ULFramework.framework) \
    | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks; tar xf -)
cd /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep; \
rm -f ULFramework; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/ULFramework.framework/Headers short` ULFramework; \

cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/.; \
rm -f libULFramework.so; \
rm -f libULFramework.so.0; \
rm -f libULFramework.so.0.6; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so short` libULFramework.so; \
if test -r "/<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/./libULFramework.so.0"; then \
  ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/./libULFramework.so.0 short` libULFramework.so.0; \
fi; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/lib/adun.app/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/./libULFramework.so.0.6 short` libULFramework.so.0.6
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/ULFramework'
Making install in AdunServer ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/AdunServer'
Making install for tool AdunServer...
/usr/bin/install -c -p  -m 0755 \
	./obj/AdunServer \
	/<<PKGBUILDDIR>>/debian/tmp//usr/bin/.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/AdunServer'
Making install in Extensions/ULApplicationScripting ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
Making install for bundle ULApplicationScripting...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep/ULApplicationScripting
for file in ULScriptManager.h STTranscript.h  __done; do \
  if [ $file != __done ]; then \
    /usr/bin/install -c -p  -m 644 ./$file \
          /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep/ULApplicationScripting/$file; \
  fi; \
done
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles
rm -rf /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles/ULApplicationScripting.bundle; \
        /usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles; \
(cd ./.; \
    tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list ULApplicationScripting.bundle) \
 | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles; tar xf -)
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULApplicationScripting'
Making install in Extensions/ULSQLDatabaseBackend ...
make[4]: Entering directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
Making install for bundle ULSQLDatabaseBackend...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep/ULSQLDatabaseBackend
for file in ULSQLDatabaseBackend.h  __done; do \
  if [ $file != __done ]; then \
    /usr/bin/install -c -p  -m 644 ./$file \
          /<<PKGBUILDDIR>>/debian/tmp//usr/include/GNUstep/ULSQLDatabaseBackend/$file; \
  fi; \
done
rm -rf /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles/ULSQLDatabaseBackend.bundle; \
        /usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles; \
(cd ./.; \
    tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list ULSQLDatabaseBackend.bundle) \
 | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Bundles; tar xf -)
make[4]: Leaving directory '/<<PKGBUILDDIR>>/UL/Extensions/ULSQLDatabaseBackend'
Making install for app UL...
/usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Applications
rm -rf /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Applications/UL.app; \
        /usr/share/GNUstep/Makefiles/mkinstalldirs /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Applications; \
(cd ./.; \
    tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list UL.app) \
 | (cd /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Applications; tar xf -)
\
  cd /<<PKGBUILDDIR>>/debian/tmp//usr/bin/.; \
  rm -f UL; \
  ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /<<PKGBUILDDIR>>/debian/tmp//usr/bin/. /<<PKGBUILDDIR>>/debian/tmp//usr/lib/GNUstep/Applications/UL.app/./UL short` \
          UL
make[3]: Leaving directory '/<<PKGBUILDDIR>>/UL'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/GNUstep
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/GNUstep/Applications/UL.app/Resources \
   /<<PKGBUILDDIR>>/debian/tmp/usr/share/GNUstep/UL.app
rm -r /<<PKGBUILDDIR>>/debian/tmp/usr/include/GNUstep/Framework \
      /<<PKGBUILDDIR>>/debian/tmp/usr/lib/GNUstep/Tools
rm /<<PKGBUILDDIR>>/debian/tmp/usr/share/GNUstep/UL.app/*.desktop
find /<<PKGBUILDDIR>>/debian/tmp/usr/share/GNUstep/UL.app -type f -exec chmod -x '{}' \;
chmod -x /<<PKGBUILDDIR>>/debian/tmp/usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources/ForceFields/Enzymix/*.ffml
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gnustep
dh_link usr/share/GNUstep/UL.app \
  /usr/lib/GNUstep/Applications/UL.app/Resources
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   debian/rules override_dh_strip
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_strip --dbg-package=adun.app-dbg
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -n
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/adun.app/usr/lib/GNUstep/Bundles/ULSQLDatabaseBackend.bundle/ULSQLDatabaseBackend debian/adun.app/usr/lib/GNUstep/Bundles/ULApplicationScripting.bundle/ULApplicationScripting debian/adun.app/usr/lib/GNUstep/Applications/UL.app/UL were not linked against libpthread.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/adun-core/usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'adun.app' in '../adun.app_0.81-9_armhf.deb'.
dpkg-deb: building package 'adun.app-dbg' in '../adun.app-dbg_0.81-9_armhf.deb'.
dpkg-deb: building package 'adun-core' in '../adun-core_0.81-9_armhf.deb'.
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../adun.app_0.81-9_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build adun.app-0.81
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160721-1053

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


adun.app_0.81-9_armhf.changes:
------------------------------

Format: 1.8
Date: Mon, 04 Jul 2016 10:00:50 +0000
Source: adun.app
Binary: adun.app adun-core adun.app-dbg
Architecture: armhf
Version: 0.81-9
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Gert Wollny <gw.fossdev@gmail.com>
Description:
 adun-core  - Molecular Simulator
 adun.app   - Molecular Simulator for GNUstep (GUI)
 adun.app-dbg - Molecular Simulator for GNUstep (debugging symbols)
Closes: 811709
Changes:
 adun.app (0.81-9) unstable; urgency=medium
 .
   [ Gert Wollny ]
   * Team upload.
   * d/p/gcc-6: Add patch to fix compilation with gcc-6, Closes: #811709
   * cme fix dpkg-control
   * d/control: Change browse URL to https
 .
   [ Andreas Tille ]
   * hardening=+bindnow
Checksums-Sha1:
 84fd85f0ba9f23a3c849accf38c641a9b1a11040 622564 adun-core_0.81-9_armhf.deb
 b5a20d2869d436e2b6ed817b3d266f23daad7635 1565852 adun.app-dbg_0.81-9_armhf.deb
 ff3fb3927018d0b405f834973fac738255faa859 473100 adun.app_0.81-9_armhf.deb
Checksums-Sha256:
 3bf94c7e438bdf41f229f53c42ab1ac5290271ac6a159ce2ef3778e9c2a826ea 622564 adun-core_0.81-9_armhf.deb
 14c2880499950016bae169672ca82bdb32306b43bc724b6563ebe524c854291a 1565852 adun.app-dbg_0.81-9_armhf.deb
 dae38ad88607723d7d749c6906df8157f07be5286389e784da7bccf7f6c0d040 473100 adun.app_0.81-9_armhf.deb
Files:
 3525c556779ba9794755367ca5610838 622564 science optional adun-core_0.81-9_armhf.deb
 ab534405d11b97cf244bca68d46fa111 1565852 debug extra adun.app-dbg_0.81-9_armhf.deb
 3a2d2b140fd5dd896ed0a9beb08230a1 473100 science optional adun.app_0.81-9_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


adun-core_0.81-9_armhf.deb
--------------------------

 new debian package, version 2.0.
 size 622564 bytes: control archive=6092 bytes.
     855 bytes,    20 lines      control              
   18931 bytes,   174 lines      md5sums              
     123 bytes,     5 lines      shlibs               
 Package: adun-core
 Source: adun.app
 Version: 0.81-9
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4649
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgnustep-base1.24 (>= 1.24.7), libgsl2, libobjc4 (>= 4.2.1), gnustep-fslayout-fhs
 Breaks: adun.app (<< 0.81-7)
 Replaces: adun.app (<< 0.81-7)
 Section: science
 Priority: optional
 Homepage: http://diana.imim.es/Adun
 Description: Molecular Simulator
  Adun is a biomolecular simulator that also includes data management and
  analysis capabilities.  It was developed at the Computational Biophysics
  and Biochemistry Laboratory, a part of the Research Unit on Biomedical
  Informatics of the UPF.
  .
  This package contains the AdunCore program and the Adun server.  If
  you want the graphical UI frontend, install the adun.app package.

drwxr-xr-x root/root         0 2016-07-21 10:52 ./
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/bin/
-rwxr-xr-x root/root     20912 2016-07-21 10:52 ./usr/bin/AdunCore
-rwxr-xr-x root/root     32976 2016-07-21 10:52 ./usr/bin/AdunServer
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/include/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/AdunKernel -> ../../lib/GNUstep/Frameworks/AdunKernel.framework/Headers
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/include/GNUstep/Base/
-rw-r--r-- root/root       998 2008-11-24 16:01 ./usr/include/GNUstep/Base/AdBaseFunctions.h
-rw-r--r-- root/root     10840 2009-03-03 10:56 ./usr/include/GNUstep/Base/AdForceFieldFunctions.h
-rw-r--r-- root/root      6041 2009-03-21 13:18 ./usr/include/GNUstep/Base/AdGeneralizedBornFunctions.h
-rw-r--r-- root/root      6433 2008-11-24 15:56 ./usr/include/GNUstep/Base/AdLinkedList.h
-rw-r--r-- root/root      6040 2009-03-21 13:18 ./usr/include/GNUstep/Base/AdMatrix.h
-rw-r--r-- root/root      2695 2008-03-14 13:26 ./usr/include/GNUstep/Base/AdQuadratureFunctions.h
-rw-r--r-- root/root      2066 2007-04-24 15:14 ./usr/include/GNUstep/Base/AdQuaternion.h
-rw-r--r-- root/root      1178 2008-01-12 00:00 ./usr/include/GNUstep/Base/AdSorter.h
-rw-r--r-- root/root      7470 2008-11-24 15:36 ./usr/include/GNUstep/Base/AdVector.h
-rw-r--r-- root/root     10542 2008-11-24 16:41 ./usr/include/GNUstep/Base/AdVolumeFunctions.h
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Headers -> Versions/0
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/
drwxr-xr-x root/root         0 2016-07-21 10:42 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/
-rw-r--r-- root/root      2829 2006-12-15 15:08 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdCommandInterface.h
-rw-r--r-- root/root      4970 2007-05-02 11:48 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdController.h
-rw-r--r-- root/root      3024 2009-01-16 14:52 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdCoreAdditions.h
-rw-r--r-- root/root      1901 2006-12-15 15:08 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdCoreCommand.h
-rw-r--r-- root/root      4710 2007-06-18 17:50 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdDataSources.h
-rw-r--r-- root/root      1119 2006-12-15 14:22 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdEndSimulationCommand.h
-rw-r--r-- root/root      3921 2008-07-11 13:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdForceFieldTerm.h
-rw-r--r-- root/root      5935 2009-03-21 13:58 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdFrameworkFunctions.h
-rw-r--r-- root/root      2167 2008-03-19 22:13 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdGridDelegate.h
-rw-r--r-- root/root      1696 2007-06-13 12:34 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdIndexSetConversions.h
-rw-r--r-- root/root      2704 2009-03-02 14:11 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdMatrixModification.h
-rw-r--r-- root/root      1836 2006-12-15 14:41 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdMemento.h
-rw-r--r-- root/root      3041 2007-04-26 12:46 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdServerInterface.h
-rw-r--r-- root/root      1075 2006-12-15 14:22 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdStatusCommand.h
-rw-r--r-- root/root      2644 2007-04-24 15:09 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunAmberForceField.h
-rw-r--r-- root/root      3621 2008-11-11 18:26 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunBerendsenThermostat.h
-rw-r--r-- root/root      4310 2006-12-15 15:16 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunCellListHandler.h
-rw-r--r-- root/root      2857 2008-03-22 13:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunCharmmForceField.h
-rw-r--r-- root/root     10649 2008-08-08 10:28 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunCheckpointManager.h
-rw-r--r-- root/root      4323 2007-07-02 10:56 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunConfigurationGenerator.h
-rw-r--r-- root/root      7880 2007-08-29 12:05 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunContainerDataSource.h
-rw-r--r-- root/root      5598 2008-10-03 11:49 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunController.h
-rw-r--r-- root/root      7604 2008-08-20 09:37 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunCore.h
-rw-r--r-- root/root      3311 2008-03-19 22:14 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunCuboidBox.h
-rw-r--r-- root/root     22611 2008-10-24 14:24 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunDataMatrix.h
-rw-r--r-- root/root      4534 2008-10-10 16:16 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunDataSet.h
-rw-r--r-- root/root     12373 2007-06-18 17:50 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunDataSource.h
-rw-r--r-- root/root      5210 2009-03-03 10:48 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunDefinitions.h
-rw-r--r-- root/root      6315 2009-03-02 12:12 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunDynamics.h
-rw-r--r-- root/root      4098 2008-07-31 11:58 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunElementSelection.h
-rw-r--r-- root/root      2691 2007-03-16 12:26 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunEllipsoidBox.h
-rw-r--r-- root/root      2449 2007-04-24 15:09 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunEnzymixForceField.h
-rw-r--r-- root/root     10250 2016-07-21 10:41 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunFileSystemSimulationStorage.h
-rw-r--r-- root/root      6710 2008-07-11 13:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunForceField.h
-rw-r--r-- root/root      5324 2008-07-16 12:52 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunForceFieldCollection.h
-rw-r--r-- root/root      6327 2009-01-16 14:51 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunGRFNonbondedTerm.h
-rw-r--r-- root/root      7151 2008-07-11 13:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunGrid.h
-rw-r--r-- root/root      3994 2008-12-11 11:17 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunHarmonicConstraintTerm.h
-rw-r--r-- root/root      9894 2008-08-29 12:50 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunIOManager.h
-rw-r--r-- root/root      8190 2008-07-11 14:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunInteractionSystem.h
-rw-r--r-- root/root      7428 2009-03-21 13:40 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunKernel.h
-rw-r--r-- root/root      5602 2008-07-25 13:31 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunLangevinThermostat.h
-rw-r--r-- root/root      3400 2007-07-31 14:37 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunLinkedList.h
-rw-r--r-- root/root      8082 2007-03-16 12:46 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunListHandler.h
-rw-r--r-- root/root      2173 2008-07-11 13:35 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMatrixStructureCoder.h
-rw-r--r-- root/root      3594 2007-07-10 21:57 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMemoryManager.h
-rw-r--r-- root/root      8227 2008-05-29 09:55 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMinimiser.h
-rw-r--r-- root/root     15015 2009-03-21 13:40 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunModelObject.h
-rw-r--r-- root/root     10710 2008-10-24 15:27 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMolecularMechanicsForceField.h
-rw-r--r-- root/root      6412 2008-04-03 18:14 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMoleculeCavity.h
-rw-r--r-- root/root      1423 2007-11-08 11:15 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunMultithreadedNonbondedTerm.h
-rw-r--r-- root/root      5827 2008-07-11 13:36 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunNonbondedTerm.h
-rw-r--r-- root/root      5894 2008-12-10 10:24 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunPureNonbondedTerm.h
-rw-r--r-- root/root      6591 2008-07-11 13:37 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSCAAS.h
-rw-r--r-- root/root      5311 2008-03-19 16:01 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunShiftedNonbondedTerm.h
-rw-r--r-- root/root      2070 2006-12-15 15:16 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSimpleListHandler.h
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-rw-r--r-- root/root     10050 2007-07-02 10:56 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSimulator.h
-rw-r--r-- root/root      9357 2008-06-28 11:44 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSmoothedGBTerm.h
-rw-r--r-- root/root      1833 2007-03-16 12:26 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSphericalBox.h
-rw-r--r-- root/root     17204 2008-11-13 16:40 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunSystem.h
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-rw-r--r-- root/root     11854 2008-11-24 16:10 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunTrajectory.h
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/MolTalk.framework/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/MolTalk.framework/Headers -> Versions/3
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/MolTalk.framework/Versions/
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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/ULFramework.framework/
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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/Frameworks/ULFramework.framework/Versions/
drwxr-xr-x root/root         0 2016-07-21 10:47 ./usr/include/GNUstep/Frameworks/ULFramework.framework/Versions/0/
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/include/GNUstep/MolTalk -> ../../lib/GNUstep/Frameworks/MolTalk.framework/Headers
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/include/GNUstep/ULSQLDatabaseBackend/
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/lib/
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/lib/GNUstep/Frameworks/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/AdunKernel -> Versions/Current/AdunKernel
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Headers -> Versions/Current/Headers
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunKernel -> libAdunKernel.so
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Headers -> ../../../../../../include/GNUstep/Frameworks/AdunKernel.framework/Versions/0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Resources -> ../../../../../../share/GNUstep/Frameworks/AdunKernel.framework/Versions/0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so -> libAdunKernel.so.0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0 -> libAdunKernel.so.0.13
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current -> 0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/libAdunKernel.so -> Versions/Current/libAdunKernel.so
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Headers -> Versions/Current/Headers
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/MolTalk -> Versions/Current/MolTalk
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/MolTalk -> libMolTalk.so
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/Resources -> ../../../../../../share/GNUstep/Frameworks/MolTalk.framework/Versions/3
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so -> libMolTalk.so.3
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3 -> libMolTalk.so.3.0.1
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current -> 3
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/libMolTalk.so -> Versions/Current/libMolTalk.so
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/ULFramework -> Versions/Current/ULFramework
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources -> ../../../../../../share/GNUstep/Frameworks/ULFramework.framework/Versions/0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/ULFramework -> libULFramework.so
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0 -> libULFramework.so.0.6
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current -> 0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/libULFramework.so -> Versions/Current/libULFramework.so
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libAdunKernel.so -> ../GNUstep/Frameworks/AdunKernel.framework/Versions/Current/libAdunKernel.so
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libAdunKernel.so.0 -> ../GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libAdunKernel.so.0.13 -> ../GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libMolTalk.so -> ../GNUstep/Frameworks/MolTalk.framework/Versions/Current/libMolTalk.so
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libMolTalk.so.3 -> ../GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libMolTalk.so.3.0.1 -> ../GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libULFramework.so -> ../GNUstep/Frameworks/ULFramework.framework/Versions/Current/libULFramework.so
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libULFramework.so.0 -> ../GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libULFramework.so.0.6 -> ../GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libXMLLib.so -> libXMLLib.so.0
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lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/adun.app/libadun_base.so -> libadun_base.so.0
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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/GNUstep/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/GNUstep/Frameworks/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/GNUstep/Frameworks/AdunKernel.framework/
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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/GNUstep/Frameworks/MolTalk.framework/Versions/
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/doc/adun-core/
-rw-r--r-- root/root      3849 2016-07-04 12:00 ./usr/share/doc/adun-core/changelog.Debian.gz
-rw-r--r-- root/root      4696 2015-09-10 09:41 ./usr/share/doc/adun-core/copyright
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/man/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/man/man1/
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adun.app-dbg_0.81-9_armhf.deb
-----------------------------

 new debian package, version 2.0.
 size 1565852 bytes: control archive=1139 bytes.
     676 bytes,    16 lines      control              
    1212 bytes,    12 lines      md5sums              
 Package: adun.app-dbg
 Source: adun.app
 Version: 0.81-9
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2302
 Depends: adun-core (= 0.81-9) | adun.app (= 0.81-9), gnustep-fslayout-fhs
 Section: debug
 Priority: extra
 Homepage: http://diana.imim.es/Adun
 Description: Molecular Simulator for GNUstep (debugging symbols)
  Adun is a biomolecular simulator that also includes data management and
  analysis capabilities.
  .
  This package contains the detached debugging symbols.
 Build-Ids: 31cc23252091b6cf084bf33e0f692165e93abd86 4e926ddfc8cabe5c84037b2dd2bd566fb5dc5bcf d4f5d8b6da541280b2fe988d24513c390972e652

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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/doc/adun.app-dbg/
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-rw-r--r-- root/root      4696 2015-09-10 09:41 ./usr/share/doc/adun.app-dbg/copyright


adun.app_0.81-9_armhf.deb
-------------------------

 new debian package, version 2.0.
 size 473100 bytes: control archive=2784 bytes.
     890 bytes,    17 lines      control              
    6622 bytes,    76 lines      md5sums              
 Package: adun.app
 Version: 0.81-9
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2252
 Depends: adun-core (= 0.81-9), gnustep-back0.24 (>= 0.24.0), gnustep-gui-runtime (>= 0.24.0), libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgnustep-base1.24 (>= 1.24.7), libgnustep-gui0.24 (>= 0.24.0), libobjc4 (>= 4.2.1), libsqlclient1.7, libsteptalk0 (>= 0.10.0), steptalk, gnustep-fslayout-fhs
 Recommends: gnuplot
 Section: science
 Priority: optional
 Homepage: http://diana.imim.es/Adun
 Description: Molecular Simulator for GNUstep (GUI)
  Adun is a biomolecular simulator that also includes data management and
  analysis capabilities.  It was developed at the Computational Biophysics
  and Biochemistry Laboratory, a part of the Research Unit on Biomedical
  Informatics of the UPF.
  .
  This package contains UL, the Adun GUI frontend.

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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/bin/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/bin/UL -> ../lib/GNUstep/Applications/UL.app/UL
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/lib/
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/lib/GNUstep/
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/lib/GNUstep/Applications/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Applications/UL.app/
lrwxrwxrwx root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Applications/UL.app/Resources -> ../../../../share/GNUstep/UL.app
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drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/lib/GNUstep/Bundles/ULApplicationScripting.bundle/
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/share/GNUstep/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/GNUstep/UL.app/
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drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/share/applications/
-rw-r--r-- root/root       223 2014-07-30 14:59 ./usr/share/applications/UL.desktop
drwxr-xr-x root/root         0 2016-07-21 10:51 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-07-21 10:52 ./usr/share/doc/adun.app/
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-rw-r--r-- root/root      3849 2016-07-04 12:00 ./usr/share/doc/adun.app/changelog.Debian.gz
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 68196
Build-Time: 680
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 776
Job: adun.app_0.81-9
Machine Architecture: armhf
Package: adun.app
Package-Time: 1572
Source-Version: 0.81-9
Space: 68196
Status: successful
Version: 0.81-9
--------------------------------------------------------------------------------
Finished at 20160721-1053
Build needed 00:26:12, 68196k disc space